####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS037_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS037_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 35 12 - 46 1.71 1.71 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 35 12 - 46 1.71 1.71 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 28 14 - 41 1.00 1.88 LCS_AVERAGE: 69.55 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 4 35 35 3 4 12 21 29 31 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT F 13 F 13 4 35 35 3 4 12 13 15 31 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT H 14 H 14 28 35 35 12 25 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT Y 15 Y 15 28 35 35 12 25 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT T 16 T 16 28 35 35 13 25 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT V 17 V 17 28 35 35 12 25 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT T 18 T 18 28 35 35 12 25 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT D 19 D 19 28 35 35 13 25 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT I 20 I 20 28 35 35 13 25 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT K 21 K 21 28 35 35 13 25 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT D 22 D 22 28 35 35 13 25 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT L 23 L 23 28 35 35 13 25 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT T 24 T 24 28 35 35 13 25 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT K 25 K 25 28 35 35 12 25 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT L 26 L 26 28 35 35 11 25 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT G 27 G 27 28 35 35 13 25 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT A 28 A 28 28 35 35 12 25 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT I 29 I 29 28 35 35 13 25 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT Y 30 Y 30 28 35 35 13 25 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT D 31 D 31 28 35 35 13 25 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT K 32 K 32 28 35 35 3 20 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT T 33 T 33 28 35 35 5 15 21 28 31 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT K 34 K 34 28 35 35 5 20 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT K 35 K 35 28 35 35 13 25 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT Y 36 Y 36 28 35 35 5 25 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT W 37 W 37 28 35 35 6 25 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT V 38 V 38 28 35 35 11 25 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT Y 39 Y 39 28 35 35 13 25 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT Q 40 Q 40 28 35 35 6 18 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT G 41 G 41 28 35 35 5 16 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT K 42 K 42 12 35 35 5 25 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT P 43 P 43 12 35 35 5 16 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT V 44 V 44 12 35 35 7 25 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT M 45 M 45 12 35 35 5 6 22 26 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT P 46 P 46 12 35 35 5 10 22 26 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_AVERAGE LCS_A: 89.85 ( 69.55 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 13 25 28 30 32 33 33 35 35 35 35 35 35 35 35 35 35 35 35 35 GDT PERCENT_AT 37.14 71.43 80.00 85.71 91.43 94.29 94.29 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.39 0.63 0.76 0.93 1.16 1.26 1.26 1.71 1.71 1.71 1.71 1.71 1.71 1.71 1.71 1.71 1.71 1.71 1.71 1.71 GDT RMS_ALL_AT 1.74 1.73 1.76 1.80 1.77 1.80 1.80 1.71 1.71 1.71 1.71 1.71 1.71 1.71 1.71 1.71 1.71 1.71 1.71 1.71 # Checking swapping # possible swapping detected: F 13 F 13 # possible swapping detected: Y 15 Y 15 # possible swapping detected: Y 36 Y 36 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 4.224 0 0.110 1.291 4.681 40.476 42.952 LGA F 13 F 13 4.647 0 0.208 1.097 11.633 40.833 16.797 LGA H 14 H 14 1.210 0 0.628 0.995 8.221 81.429 45.762 LGA Y 15 Y 15 0.919 0 0.051 0.656 3.790 88.214 69.286 LGA T 16 T 16 0.179 0 0.096 0.192 1.075 100.000 93.333 LGA V 17 V 17 0.450 0 0.038 0.142 1.120 100.000 94.626 LGA T 18 T 18 0.694 0 0.039 0.165 1.531 90.476 85.374 LGA D 19 D 19 0.602 0 0.058 0.178 1.432 95.238 89.464 LGA I 20 I 20 0.208 0 0.026 0.059 0.612 100.000 98.810 LGA K 21 K 21 0.273 0 0.028 1.128 4.954 100.000 77.566 LGA D 22 D 22 0.343 0 0.037 0.111 0.603 97.619 96.429 LGA L 23 L 23 0.510 0 0.038 0.102 0.804 90.476 91.667 LGA T 24 T 24 0.463 0 0.048 1.149 2.928 95.238 84.762 LGA K 25 K 25 0.638 0 0.116 0.906 2.431 90.476 82.751 LGA L 26 L 26 0.658 0 0.085 1.406 2.772 95.238 82.321 LGA G 27 G 27 0.401 0 0.035 0.035 0.816 95.238 95.238 LGA A 28 A 28 0.574 0 0.072 0.095 0.709 92.857 92.381 LGA I 29 I 29 0.311 0 0.190 1.162 3.545 95.357 78.988 LGA Y 30 Y 30 0.358 0 0.061 0.286 1.131 97.619 92.937 LGA D 31 D 31 0.771 0 0.127 0.134 1.647 83.810 82.619 LGA K 32 K 32 2.375 0 0.118 0.689 5.701 62.976 52.698 LGA T 33 T 33 3.524 0 0.081 0.716 6.239 50.119 43.537 LGA K 34 K 34 2.655 0 0.033 0.766 4.173 65.000 57.619 LGA K 35 K 35 0.798 0 0.153 0.832 5.555 88.214 75.450 LGA Y 36 Y 36 0.905 0 0.106 1.411 9.549 88.214 52.222 LGA W 37 W 37 0.773 0 0.127 0.176 1.356 88.214 89.864 LGA V 38 V 38 0.436 0 0.159 0.196 0.906 95.238 94.558 LGA Y 39 Y 39 0.436 0 0.116 0.229 1.900 95.238 86.944 LGA Q 40 Q 40 1.867 0 0.098 0.809 6.150 69.048 55.503 LGA G 41 G 41 1.956 0 0.090 0.090 1.956 72.857 72.857 LGA K 42 K 42 1.388 0 0.178 0.655 3.240 85.952 73.439 LGA P 43 P 43 1.561 0 0.081 0.336 2.577 77.143 71.905 LGA V 44 V 44 0.938 0 0.070 0.085 1.941 88.214 82.857 LGA M 45 M 45 2.653 0 0.069 1.035 7.687 57.619 39.048 LGA P 46 P 46 2.997 0 0.122 0.453 5.159 46.310 57.687 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 1.705 1.710 2.859 82.884 74.293 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 35 1.71 89.286 94.010 1.939 LGA_LOCAL RMSD: 1.705 Number of atoms: 35 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.705 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 1.705 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.047871 * X + -0.827810 * Y + 0.558962 * Z + -41.177406 Y_new = -0.873931 * X + 0.236272 * Y + 0.424759 * Z + -41.483509 Z_new = -0.483687 * X + -0.508828 * Y + -0.712139 * Z + 34.923569 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.516075 0.504862 -2.521197 [DEG: -86.8647 28.9265 -144.4540 ] ZXZ: 2.220608 2.363336 -2.381519 [DEG: 127.2314 135.4092 -136.4510 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS037_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS037_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 35 1.71 94.010 1.71 REMARK ---------------------------------------------------------- MOLECULE T0548TS037_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REFINED REMARK PARENT N/A ATOM 87 N HIS 12 -43.247 -28.068 37.024 1.00 0.00 N ATOM 88 CA HIS 12 -42.199 -27.172 37.514 1.00 0.00 C ATOM 89 C HIS 12 -42.086 -25.895 36.634 1.00 0.00 C ATOM 90 O HIS 12 -41.852 -25.985 35.437 1.00 0.00 O ATOM 91 CB HIS 12 -40.849 -27.963 37.542 1.00 0.00 C ATOM 92 CG HIS 12 -39.772 -27.183 38.259 1.00 0.00 C ATOM 93 ND1 HIS 12 -39.144 -26.077 37.724 1.00 0.00 N ATOM 94 CD2 HIS 12 -39.203 -27.388 39.470 1.00 0.00 C ATOM 95 CE1 HIS 12 -38.238 -25.633 38.576 1.00 0.00 C ATOM 96 NE2 HIS 12 -38.252 -26.411 39.643 1.00 0.00 N ATOM 97 N PHE 13 -41.962 -24.778 37.300 1.00 0.00 N ATOM 98 CA PHE 13 -41.762 -23.515 36.613 1.00 0.00 C ATOM 99 C PHE 13 -40.237 -23.205 36.585 1.00 0.00 C ATOM 100 O PHE 13 -39.672 -22.648 37.533 1.00 0.00 O ATOM 101 CB PHE 13 -42.610 -22.455 37.372 1.00 0.00 C ATOM 102 CG PHE 13 -42.632 -21.143 36.573 1.00 0.00 C ATOM 103 CD1 PHE 13 -43.302 -21.081 35.361 1.00 0.00 C ATOM 104 CD2 PHE 13 -42.034 -19.991 37.060 1.00 0.00 C ATOM 105 CE1 PHE 13 -43.373 -19.896 34.653 1.00 0.00 C ATOM 106 CE2 PHE 13 -42.104 -18.805 36.356 1.00 0.00 C ATOM 107 CZ PHE 13 -42.775 -18.759 35.151 1.00 0.00 C ATOM 108 N HIS 14 -39.683 -23.403 35.375 1.00 0.00 N ATOM 109 CA HIS 14 -38.234 -23.186 35.118 1.00 0.00 C ATOM 110 C HIS 14 -37.857 -21.703 34.792 1.00 0.00 C ATOM 111 O HIS 14 -36.661 -21.422 34.738 1.00 0.00 O ATOM 112 CB HIS 14 -37.886 -24.132 33.977 1.00 0.00 C ATOM 113 CG HIS 14 -37.843 -25.570 34.306 1.00 0.00 C ATOM 114 ND1 HIS 14 -36.840 -26.165 35.040 1.00 0.00 N ATOM 115 CD2 HIS 14 -38.733 -26.549 34.020 1.00 0.00 C ATOM 116 CE1 HIS 14 -37.114 -27.451 35.192 1.00 0.00 C ATOM 117 NE2 HIS 14 -38.257 -27.707 34.583 1.00 0.00 N ATOM 118 N TYR 15 -38.788 -20.777 34.603 1.00 0.00 N ATOM 119 CA TYR 15 -38.505 -19.425 34.288 1.00 0.00 C ATOM 120 C TYR 15 -38.526 -18.476 35.495 1.00 0.00 C ATOM 121 O TYR 15 -39.408 -18.586 36.350 1.00 0.00 O ATOM 122 CB TYR 15 -39.540 -18.890 33.266 1.00 0.00 C ATOM 123 CG TYR 15 -39.360 -19.484 31.870 1.00 0.00 C ATOM 124 CD1 TYR 15 -40.249 -20.428 31.379 1.00 0.00 C ATOM 125 CD2 TYR 15 -38.307 -19.090 31.058 1.00 0.00 C ATOM 126 CE1 TYR 15 -40.096 -20.969 30.117 1.00 0.00 C ATOM 127 CE2 TYR 15 -38.144 -19.624 29.793 1.00 0.00 C ATOM 128 CZ TYR 15 -39.041 -20.564 29.327 1.00 0.00 C ATOM 129 OH TYR 15 -38.883 -21.096 28.068 1.00 0.00 H ATOM 130 N THR 16 -37.697 -17.457 35.447 1.00 0.00 N ATOM 131 CA THR 16 -37.665 -16.459 36.438 1.00 0.00 C ATOM 132 C THR 16 -38.371 -15.150 35.992 1.00 0.00 C ATOM 133 O THR 16 -39.124 -15.200 35.007 1.00 0.00 O ATOM 134 CB THR 16 -36.272 -16.120 36.876 1.00 0.00 C ATOM 135 OG1 THR 16 -35.509 -15.374 35.827 1.00 0.00 O ATOM 136 CG2 THR 16 -35.377 -17.322 37.287 1.00 0.00 C ATOM 137 N VAL 17 -38.656 -14.272 36.966 1.00 0.00 N ATOM 138 CA VAL 17 -39.237 -12.941 36.730 1.00 0.00 C ATOM 139 C VAL 17 -38.533 -12.282 35.474 1.00 0.00 C ATOM 140 O VAL 17 -39.255 -11.850 34.562 1.00 0.00 O ATOM 141 CB VAL 17 -39.255 -12.049 37.926 1.00 0.00 C ATOM 142 CG1 VAL 17 -39.672 -10.591 37.575 1.00 0.00 C ATOM 143 CG2 VAL 17 -39.943 -12.608 39.163 1.00 0.00 C ATOM 144 N THR 18 -37.205 -12.055 35.450 1.00 0.00 N ATOM 145 CA THR 18 -36.525 -11.544 34.224 1.00 0.00 C ATOM 146 C THR 18 -36.998 -12.365 32.974 1.00 0.00 C ATOM 147 O THR 18 -37.293 -11.687 31.960 1.00 0.00 O ATOM 148 CB THR 18 -35.018 -11.494 34.627 1.00 0.00 C ATOM 149 OG1 THR 18 -34.711 -10.713 35.863 1.00 0.00 O ATOM 150 CG2 THR 18 -34.082 -10.962 33.553 1.00 0.00 C ATOM 151 N ASP 19 -37.008 -13.698 32.997 1.00 0.00 N ATOM 152 CA ASP 19 -37.497 -14.460 31.900 1.00 0.00 C ATOM 153 C ASP 19 -38.997 -14.052 31.619 1.00 0.00 C ATOM 154 O ASP 19 -39.312 -13.937 30.436 1.00 0.00 O ATOM 155 CB ASP 19 -37.403 -15.952 32.168 1.00 0.00 C ATOM 156 CG ASP 19 -35.983 -16.454 32.357 1.00 0.00 C ATOM 157 OD1 ASP 19 -35.140 -16.098 31.568 1.00 0.00 O ATOM 158 OD2 ASP 19 -35.717 -17.054 33.370 1.00 0.00 O ATOM 159 N ILE 20 -39.906 -13.959 32.638 1.00 0.00 N ATOM 160 CA ILE 20 -41.309 -13.503 32.381 1.00 0.00 C ATOM 161 C ILE 20 -41.323 -12.179 31.613 1.00 0.00 C ATOM 162 O ILE 20 -42.131 -12.066 30.703 1.00 0.00 O ATOM 163 CB ILE 20 -42.062 -13.394 33.741 1.00 0.00 C ATOM 164 CG1 ILE 20 -42.225 -14.735 34.390 1.00 0.00 C ATOM 165 CG2 ILE 20 -43.428 -12.735 33.466 1.00 0.00 C ATOM 166 CD1 ILE 20 -42.653 -14.652 35.837 1.00 0.00 C ATOM 167 N LYS 21 -40.596 -11.123 32.043 1.00 0.00 N ATOM 168 CA LYS 21 -40.472 -9.850 31.386 1.00 0.00 C ATOM 169 C LYS 21 -40.054 -10.031 29.905 1.00 0.00 C ATOM 170 O LYS 21 -40.655 -9.372 29.085 1.00 0.00 O ATOM 171 CB LYS 21 -39.483 -8.984 32.172 1.00 0.00 C ATOM 172 CG LYS 21 -39.953 -8.510 33.508 1.00 0.00 C ATOM 173 CD LYS 21 -38.898 -7.663 34.205 1.00 0.00 C ATOM 174 CE LYS 21 -39.385 -7.179 35.563 1.00 0.00 C ATOM 175 NZ LYS 21 -38.354 -6.368 36.267 1.00 0.00 N ATOM 176 N ASP 22 -38.919 -10.652 29.598 1.00 0.00 N ATOM 177 CA ASP 22 -38.442 -10.971 28.254 1.00 0.00 C ATOM 178 C ASP 22 -39.580 -11.688 27.467 1.00 0.00 C ATOM 179 O ASP 22 -39.648 -11.433 26.282 1.00 0.00 O ATOM 180 CB ASP 22 -37.180 -11.826 28.381 1.00 0.00 C ATOM 181 CG ASP 22 -35.954 -11.099 28.830 1.00 0.00 C ATOM 182 OD1 ASP 22 -35.986 -9.891 28.877 1.00 0.00 O ATOM 183 OD2 ASP 22 -35.046 -11.744 29.297 1.00 0.00 O ATOM 184 N LEU 23 -40.197 -12.790 27.978 1.00 0.00 N ATOM 185 CA LEU 23 -41.304 -13.483 27.368 1.00 0.00 C ATOM 186 C LEU 23 -42.461 -12.483 27.052 1.00 0.00 C ATOM 187 O LEU 23 -43.000 -12.618 25.955 1.00 0.00 O ATOM 188 CB LEU 23 -41.719 -14.649 28.275 1.00 0.00 C ATOM 189 CG LEU 23 -40.785 -15.811 28.357 1.00 0.00 C ATOM 190 CD1 LEU 23 -41.185 -16.723 29.510 1.00 0.00 C ATOM 191 CD2 LEU 23 -40.780 -16.575 27.042 1.00 0.00 C ATOM 192 N THR 24 -43.025 -11.725 28.026 1.00 0.00 N ATOM 193 CA THR 24 -44.035 -10.720 27.697 1.00 0.00 C ATOM 194 C THR 24 -43.544 -9.780 26.525 1.00 0.00 C ATOM 195 O THR 24 -44.383 -9.308 25.739 1.00 0.00 O ATOM 196 CB THR 24 -44.490 -9.784 28.845 1.00 0.00 C ATOM 197 OG1 THR 24 -45.105 -10.536 29.921 1.00 0.00 O ATOM 198 CG2 THR 24 -45.527 -8.758 28.276 1.00 0.00 C ATOM 199 N LYS 25 -42.274 -9.285 26.585 1.00 0.00 N ATOM 200 CA LYS 25 -41.695 -8.484 25.591 1.00 0.00 C ATOM 201 C LYS 25 -41.872 -9.164 24.187 1.00 0.00 C ATOM 202 O LYS 25 -42.192 -8.412 23.249 1.00 0.00 O ATOM 203 CB LYS 25 -40.243 -8.190 25.932 1.00 0.00 C ATOM 204 CG LYS 25 -40.014 -7.251 27.065 1.00 0.00 C ATOM 205 CD LYS 25 -38.533 -7.060 27.349 1.00 0.00 C ATOM 206 CE LYS 25 -38.311 -6.146 28.545 1.00 0.00 C ATOM 207 NZ LYS 25 -36.864 -5.960 28.843 1.00 0.00 N ATOM 208 N LEU 26 -41.461 -10.445 23.985 1.00 0.00 N ATOM 209 CA LEU 26 -41.709 -11.139 22.716 1.00 0.00 C ATOM 210 C LEU 26 -43.248 -11.311 22.441 1.00 0.00 C ATOM 211 O LEU 26 -43.603 -11.211 21.274 1.00 0.00 O ATOM 212 CB LEU 26 -41.043 -12.527 22.754 1.00 0.00 C ATOM 213 CG LEU 26 -39.510 -12.498 22.676 1.00 0.00 C ATOM 214 CD1 LEU 26 -38.952 -13.895 22.912 1.00 0.00 C ATOM 215 CD2 LEU 26 -39.070 -11.963 21.321 1.00 0.00 C ATOM 216 N GLY 27 -44.141 -11.364 23.450 1.00 0.00 N ATOM 217 CA GLY 27 -45.552 -11.518 23.335 1.00 0.00 C ATOM 218 C GLY 27 -46.066 -12.978 23.633 1.00 0.00 C ATOM 219 O GLY 27 -47.212 -13.279 23.278 1.00 0.00 O ATOM 220 N ALA 28 -45.268 -13.858 24.298 1.00 0.00 N ATOM 221 CA ALA 28 -45.641 -15.204 24.689 1.00 0.00 C ATOM 222 C ALA 28 -46.797 -15.176 25.730 1.00 0.00 C ATOM 223 O ALA 28 -46.863 -14.304 26.605 1.00 0.00 O ATOM 224 CB ALA 28 -44.385 -15.854 25.268 1.00 0.00 C ATOM 225 N ILE 29 -47.745 -16.074 25.549 1.00 0.00 N ATOM 226 CA ILE 29 -48.854 -16.246 26.453 1.00 0.00 C ATOM 227 C ILE 29 -48.649 -17.556 27.272 1.00 0.00 C ATOM 228 O ILE 29 -48.790 -18.654 26.727 1.00 0.00 O ATOM 229 CB ILE 29 -50.174 -16.300 25.674 1.00 0.00 C ATOM 230 CG1 ILE 29 -50.421 -15.007 24.931 1.00 0.00 C ATOM 231 CG2 ILE 29 -51.330 -16.588 26.655 1.00 0.00 C ATOM 232 CD1 ILE 29 -51.595 -15.057 23.980 1.00 0.00 C ATOM 233 N TYR 30 -48.716 -17.417 28.613 1.00 0.00 N ATOM 234 CA TYR 30 -48.506 -18.522 29.540 1.00 0.00 C ATOM 235 C TYR 30 -49.722 -19.525 29.454 1.00 0.00 C ATOM 236 O TYR 30 -50.852 -19.151 29.841 1.00 0.00 O ATOM 237 CB TYR 30 -48.420 -17.973 30.983 1.00 0.00 C ATOM 238 CG TYR 30 -48.094 -19.050 32.004 1.00 0.00 C ATOM 239 CD1 TYR 30 -46.804 -19.532 32.159 1.00 0.00 C ATOM 240 CD2 TYR 30 -49.091 -19.570 32.817 1.00 0.00 C ATOM 241 CE1 TYR 30 -46.511 -20.505 33.095 1.00 0.00 C ATOM 242 CE2 TYR 30 -48.810 -20.542 33.757 1.00 0.00 C ATOM 243 CZ TYR 30 -47.517 -21.007 33.894 1.00 0.00 C ATOM 244 OH TYR 30 -47.233 -21.974 34.829 1.00 0.00 H ATOM 245 N ASP 31 -49.410 -20.793 29.046 1.00 0.00 N ATOM 246 CA ASP 31 -50.454 -21.782 28.889 1.00 0.00 C ATOM 247 C ASP 31 -50.435 -22.864 29.990 1.00 0.00 C ATOM 248 O ASP 31 -49.370 -23.426 30.188 1.00 0.00 O ATOM 249 CB ASP 31 -50.277 -22.422 27.478 1.00 0.00 C ATOM 250 CG ASP 31 -51.399 -23.437 27.151 1.00 0.00 C ATOM 251 OD1 ASP 31 -52.266 -23.642 27.968 1.00 0.00 O ATOM 252 OD2 ASP 31 -51.451 -23.864 26.023 1.00 0.00 O ATOM 253 N LYS 32 -51.360 -22.674 30.940 1.00 0.00 N ATOM 254 CA LYS 32 -51.568 -23.662 32.035 1.00 0.00 C ATOM 255 C LYS 32 -51.509 -25.158 31.530 1.00 0.00 C ATOM 256 O LYS 32 -51.017 -25.979 32.327 1.00 0.00 O ATOM 257 CB LYS 32 -52.895 -23.373 32.725 1.00 0.00 C ATOM 258 CG LYS 32 -52.934 -22.101 33.538 1.00 0.00 C ATOM 259 CD LYS 32 -54.291 -21.897 34.194 1.00 0.00 C ATOM 260 CE LYS 32 -54.317 -20.629 35.036 1.00 0.00 C ATOM 261 NZ LYS 32 -55.645 -20.406 35.669 1.00 0.00 N ATOM 262 N THR 33 -52.203 -25.529 30.417 1.00 0.00 N ATOM 263 CA THR 33 -52.069 -26.907 29.948 1.00 0.00 C ATOM 264 C THR 33 -50.556 -27.273 29.906 1.00 0.00 C ATOM 265 O THR 33 -50.258 -28.409 30.285 1.00 0.00 O ATOM 266 CB THR 33 -52.872 -27.151 28.619 1.00 0.00 C ATOM 267 OG1 THR 33 -54.309 -26.923 28.813 1.00 0.00 O ATOM 268 CG2 THR 33 -52.670 -28.633 28.143 1.00 0.00 C ATOM 269 N LYS 34 -49.639 -26.438 29.336 1.00 0.00 N ATOM 270 CA LYS 34 -48.221 -26.825 29.401 1.00 0.00 C ATOM 271 C LYS 34 -47.471 -26.231 30.652 1.00 0.00 C ATOM 272 O LYS 34 -46.348 -26.689 30.863 1.00 0.00 O ATOM 273 CB LYS 34 -47.554 -26.307 28.132 1.00 0.00 C ATOM 274 CG LYS 34 -48.124 -26.863 26.832 1.00 0.00 C ATOM 275 CD LYS 34 -47.901 -28.362 26.708 1.00 0.00 C ATOM 276 CE LYS 34 -48.461 -28.900 25.399 1.00 0.00 C ATOM 277 NZ LYS 34 -48.198 -30.355 25.237 1.00 0.00 N ATOM 278 N LYS 35 -48.120 -25.471 31.543 1.00 0.00 N ATOM 279 CA LYS 35 -47.374 -24.845 32.653 1.00 0.00 C ATOM 280 C LYS 35 -46.121 -24.069 32.087 1.00 0.00 C ATOM 281 O LYS 35 -45.198 -23.833 32.888 1.00 0.00 O ATOM 282 CB LYS 35 -46.989 -25.838 33.763 1.00 0.00 C ATOM 283 CG LYS 35 -48.136 -26.660 34.263 1.00 0.00 C ATOM 284 CD LYS 35 -49.174 -25.784 34.949 1.00 0.00 C ATOM 285 CE LYS 35 -50.295 -26.619 35.550 1.00 0.00 C ATOM 286 NZ LYS 35 -51.350 -25.772 36.168 1.00 0.00 N ATOM 287 N TYR 36 -46.231 -23.388 30.902 1.00 0.00 N ATOM 288 CA TYR 36 -45.162 -22.575 30.342 1.00 0.00 C ATOM 289 C TYR 36 -45.768 -21.639 29.313 1.00 0.00 C ATOM 290 O TYR 36 -46.532 -22.059 28.434 1.00 0.00 O ATOM 291 CB TYR 36 -44.183 -23.519 29.648 1.00 0.00 C ATOM 292 CG TYR 36 -43.460 -24.474 30.531 1.00 0.00 C ATOM 293 CD1 TYR 36 -43.780 -25.840 30.548 1.00 0.00 C ATOM 294 CD2 TYR 36 -42.455 -24.030 31.385 1.00 0.00 C ATOM 295 CE1 TYR 36 -43.095 -26.705 31.391 1.00 0.00 C ATOM 296 CE2 TYR 36 -41.769 -24.882 32.253 1.00 0.00 C ATOM 297 CZ TYR 36 -42.111 -26.236 32.258 1.00 0.00 C ATOM 298 OH TYR 36 -41.444 -27.060 33.104 1.00 0.00 H ATOM 299 N TRP 37 -45.068 -20.506 29.126 1.00 0.00 N ATOM 300 CA TRP 37 -45.366 -19.483 28.130 1.00 0.00 C ATOM 301 C TRP 37 -45.210 -20.070 26.697 1.00 0.00 C ATOM 302 O TRP 37 -44.131 -20.558 26.324 1.00 0.00 O ATOM 303 CB TRP 37 -44.356 -18.374 28.369 1.00 0.00 C ATOM 304 CG TRP 37 -44.581 -17.586 29.615 1.00 0.00 C ATOM 305 CD1 TRP 37 -44.093 -17.915 30.843 1.00 0.00 C ATOM 306 CD2 TRP 37 -45.341 -16.385 29.792 1.00 0.00 C ATOM 307 NE1 TRP 37 -44.500 -16.994 31.777 1.00 0.00 N ATOM 308 CE2 TRP 37 -45.267 -16.042 31.154 1.00 0.00 C ATOM 309 CE3 TRP 37 -46.075 -15.562 28.929 1.00 0.00 C ATOM 310 CZ2 TRP 37 -45.898 -14.923 31.675 1.00 0.00 C ATOM 311 CZ3 TRP 37 -46.706 -14.439 29.450 1.00 0.00 C ATOM 312 CH2 TRP 37 -46.620 -14.128 30.783 1.00 0.00 H ATOM 313 N VAL 38 -46.177 -19.748 25.859 1.00 0.00 N ATOM 314 CA VAL 38 -46.254 -20.213 24.489 1.00 0.00 C ATOM 315 C VAL 38 -46.050 -19.039 23.537 1.00 0.00 C ATOM 316 O VAL 38 -46.951 -18.219 23.337 1.00 0.00 O ATOM 317 CB VAL 38 -47.638 -20.854 24.224 1.00 0.00 C ATOM 318 CG1 VAL 38 -47.784 -21.237 22.715 1.00 0.00 C ATOM 319 CG2 VAL 38 -47.773 -22.153 25.049 1.00 0.00 C ATOM 320 N TYR 39 -45.035 -19.224 22.705 1.00 0.00 N ATOM 321 CA TYR 39 -44.589 -18.246 21.745 1.00 0.00 C ATOM 322 C TYR 39 -44.925 -18.673 20.320 1.00 0.00 C ATOM 323 O TYR 39 -44.328 -19.606 19.793 1.00 0.00 O ATOM 324 CB TYR 39 -43.083 -17.993 21.961 1.00 0.00 C ATOM 325 CG TYR 39 -42.527 -16.970 20.961 1.00 0.00 C ATOM 326 CD1 TYR 39 -42.823 -15.622 21.101 1.00 0.00 C ATOM 327 CD2 TYR 39 -41.699 -17.355 19.917 1.00 0.00 C ATOM 328 CE1 TYR 39 -42.312 -14.683 20.226 1.00 0.00 C ATOM 329 CE2 TYR 39 -41.181 -16.425 19.038 1.00 0.00 C ATOM 330 CZ TYR 39 -41.491 -15.089 19.195 1.00 0.00 C ATOM 331 OH TYR 39 -40.978 -14.159 18.321 1.00 0.00 H ATOM 332 N GLN 40 -45.754 -17.818 19.678 1.00 0.00 N ATOM 333 CA GLN 40 -46.309 -18.073 18.324 1.00 0.00 C ATOM 334 C GLN 40 -46.978 -19.509 18.194 1.00 0.00 C ATOM 335 O GLN 40 -47.060 -20.032 17.090 1.00 0.00 O ATOM 336 CB GLN 40 -45.179 -17.917 17.261 1.00 0.00 C ATOM 337 CG GLN 40 -44.626 -16.529 17.166 1.00 0.00 C ATOM 338 CD GLN 40 -45.653 -15.518 16.693 1.00 0.00 C ATOM 339 OE1 GLN 40 -46.416 -15.776 15.758 1.00 0.00 O ATOM 340 NE2 GLN 40 -45.676 -14.356 17.336 1.00 0.00 N ATOM 341 N GLY 41 -47.752 -19.942 19.223 1.00 0.00 N ATOM 342 CA GLY 41 -48.455 -21.239 19.292 1.00 0.00 C ATOM 343 C GLY 41 -47.583 -22.485 19.615 1.00 0.00 C ATOM 344 O GLY 41 -48.006 -23.564 19.206 1.00 0.00 O ATOM 345 N LYS 42 -46.300 -22.317 19.924 1.00 0.00 N ATOM 346 CA LYS 42 -45.423 -23.434 20.255 1.00 0.00 C ATOM 347 C LYS 42 -44.854 -23.189 21.644 1.00 0.00 C ATOM 348 O LYS 42 -43.990 -22.272 21.732 1.00 0.00 O ATOM 349 CB LYS 42 -44.308 -23.403 19.209 1.00 0.00 C ATOM 350 CG LYS 42 -44.739 -23.772 17.800 1.00 0.00 C ATOM 351 CD LYS 42 -43.558 -23.861 16.845 1.00 0.00 C ATOM 352 CE LYS 42 -44.011 -24.205 15.434 1.00 0.00 C ATOM 353 NZ LYS 42 -42.860 -24.361 14.503 1.00 0.00 N ATOM 354 N PRO 43 -45.338 -23.721 22.821 1.00 0.00 N ATOM 355 CA PRO 43 -44.653 -23.336 24.024 1.00 0.00 C ATOM 356 C PRO 43 -43.131 -23.431 23.910 1.00 0.00 C ATOM 357 O PRO 43 -42.579 -24.450 23.431 1.00 0.00 O ATOM 358 CB PRO 43 -45.232 -24.261 25.157 1.00 0.00 C ATOM 359 CG PRO 43 -45.529 -25.498 24.368 1.00 0.00 C ATOM 360 CD PRO 43 -46.167 -24.925 23.127 1.00 0.00 C ATOM 361 N VAL 44 -42.519 -22.536 24.597 1.00 0.00 N ATOM 362 CA VAL 44 -41.119 -22.411 24.678 1.00 0.00 C ATOM 363 C VAL 44 -40.596 -23.323 25.795 1.00 0.00 C ATOM 364 O VAL 44 -40.904 -23.075 26.969 1.00 0.00 O ATOM 365 CB VAL 44 -40.701 -20.960 24.865 1.00 0.00 C ATOM 366 CG1 VAL 44 -39.157 -20.873 24.939 1.00 0.00 C ATOM 367 CG2 VAL 44 -41.229 -20.071 23.793 1.00 0.00 C ATOM 368 N MET 45 -39.624 -24.187 25.489 1.00 0.00 N ATOM 369 CA MET 45 -39.157 -25.158 26.484 1.00 0.00 C ATOM 370 C MET 45 -37.844 -24.574 27.134 1.00 0.00 C ATOM 371 O MET 45 -36.862 -24.630 26.345 1.00 0.00 O ATOM 372 CB MET 45 -38.948 -26.488 25.804 1.00 0.00 C ATOM 373 CG MET 45 -40.164 -27.110 25.205 1.00 0.00 C ATOM 374 SD MET 45 -41.338 -27.704 26.440 1.00 0.00 S ATOM 375 CE MET 45 -42.435 -26.296 26.567 1.00 0.00 C ATOM 376 N PRO 46 -37.879 -23.887 28.320 1.00 0.00 N ATOM 377 CA PRO 46 -36.595 -23.609 28.881 1.00 0.00 C ATOM 378 C PRO 46 -35.549 -24.714 28.926 1.00 0.00 C ATOM 379 O PRO 46 -35.914 -25.825 29.225 1.00 0.00 O ATOM 380 CB PRO 46 -36.821 -22.992 30.281 1.00 0.00 C ATOM 381 CG PRO 46 -38.047 -23.861 30.673 1.00 0.00 C ATOM 382 CD PRO 46 -38.903 -23.789 29.424 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 23.69 86.8 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 16.44 91.2 34 100.0 34 ARMSMC SURFACE . . . . . . . . 25.40 83.9 56 100.0 56 ARMSMC BURIED . . . . . . . . 13.02 100.0 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 66.57 56.2 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 69.86 51.7 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 65.79 64.7 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 72.35 48.1 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 9.86 100.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 71.65 56.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 68.21 57.1 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 36.99 92.3 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 74.70 54.5 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 43.12 66.7 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 69.70 75.0 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 73.78 71.4 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 83.42 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 69.70 75.0 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 51.76 83.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 51.76 83.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 89.37 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 51.76 83.3 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.71 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.71 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.0487 CRMSCA SECONDARY STRUCTURE . . 0.55 17 100.0 17 CRMSCA SURFACE . . . . . . . . 1.84 29 100.0 29 CRMSCA BURIED . . . . . . . . 0.72 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.78 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 0.66 85 100.0 85 CRMSMC SURFACE . . . . . . . . 1.93 143 100.0 143 CRMSMC BURIED . . . . . . . . 0.78 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 3.61 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 3.51 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 2.30 84 100.0 84 CRMSSC SURFACE . . . . . . . . 3.92 127 100.0 127 CRMSSC BURIED . . . . . . . . 1.63 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.87 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 1.76 152 100.0 152 CRMSALL SURFACE . . . . . . . . 3.11 243 100.0 243 CRMSALL BURIED . . . . . . . . 1.31 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.248 1.000 0.500 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 0.519 1.000 0.500 17 100.0 17 ERRCA SURFACE . . . . . . . . 1.364 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 0.692 1.000 0.500 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.301 1.000 0.500 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 0.584 1.000 0.500 85 100.0 85 ERRMC SURFACE . . . . . . . . 1.419 1.000 0.500 143 100.0 143 ERRMC BURIED . . . . . . . . 0.735 1.000 0.500 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.654 1.000 0.500 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 2.543 1.000 0.500 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 1.570 1.000 0.500 84 100.0 84 ERRSC SURFACE . . . . . . . . 2.965 1.000 0.500 127 100.0 127 ERRSC BURIED . . . . . . . . 1.293 1.000 0.500 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.991 1.000 0.500 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 1.121 1.000 0.500 152 100.0 152 ERRALL SURFACE . . . . . . . . 2.200 1.000 0.500 243 100.0 243 ERRALL BURIED . . . . . . . . 1.033 1.000 0.500 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 23 28 32 35 35 35 35 DISTCA CA (P) 65.71 80.00 91.43 100.00 100.00 35 DISTCA CA (RMS) 0.59 0.87 1.25 1.71 1.71 DISTCA ALL (N) 131 196 234 273 293 296 296 DISTALL ALL (P) 44.26 66.22 79.05 92.23 98.99 296 DISTALL ALL (RMS) 0.60 0.97 1.38 1.96 2.66 DISTALL END of the results output