####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS028_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS028_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 12 - 36 4.06 12.77 LCS_AVERAGE: 63.27 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 15 - 30 1.86 13.13 LONGEST_CONTINUOUS_SEGMENT: 16 16 - 31 1.52 13.70 LCS_AVERAGE: 30.29 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 16 - 30 0.82 13.68 LCS_AVERAGE: 24.98 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 3 3 25 0 3 3 3 4 4 9 12 13 14 17 24 24 24 24 24 25 25 25 25 LCS_GDT F 13 F 13 3 3 25 3 3 3 7 10 13 16 17 21 21 23 24 24 24 24 24 25 25 25 25 LCS_GDT H 14 H 14 3 9 25 3 4 5 7 10 13 16 17 21 21 23 24 24 24 24 24 25 25 25 25 LCS_GDT Y 15 Y 15 3 16 25 3 4 5 7 10 13 16 18 21 21 23 24 24 24 24 24 25 25 25 25 LCS_GDT T 16 T 16 15 16 25 9 13 15 15 15 15 16 18 21 21 23 24 24 24 24 24 25 25 25 25 LCS_GDT V 17 V 17 15 16 25 9 13 15 15 15 15 16 18 21 21 23 24 24 24 24 24 25 25 25 25 LCS_GDT T 18 T 18 15 16 25 9 13 15 15 15 15 16 18 21 21 23 24 24 24 24 24 25 25 25 25 LCS_GDT D 19 D 19 15 16 25 9 13 15 15 15 15 16 18 21 21 23 24 24 24 24 24 25 25 25 25 LCS_GDT I 20 I 20 15 16 25 9 13 15 15 15 15 16 18 21 21 23 24 24 24 24 24 25 25 25 25 LCS_GDT K 21 K 21 15 16 25 9 13 15 15 15 15 16 18 21 21 23 24 24 24 24 24 25 25 25 25 LCS_GDT D 22 D 22 15 16 25 9 13 15 15 15 15 16 18 21 21 23 24 24 24 24 24 25 25 25 25 LCS_GDT L 23 L 23 15 16 25 9 13 15 15 15 15 16 18 21 21 23 24 24 24 24 24 25 25 25 25 LCS_GDT T 24 T 24 15 16 25 9 13 15 15 15 15 16 18 21 21 23 24 24 24 24 24 25 25 25 25 LCS_GDT K 25 K 25 15 16 25 9 13 15 15 15 15 16 18 21 21 23 24 24 24 24 24 25 25 25 25 LCS_GDT L 26 L 26 15 16 25 5 13 15 15 15 15 16 18 21 21 23 24 24 24 24 24 25 25 25 25 LCS_GDT G 27 G 27 15 16 25 5 13 15 15 15 15 16 18 21 21 23 24 24 24 24 24 25 25 25 25 LCS_GDT A 28 A 28 15 16 25 5 13 15 15 15 15 16 18 21 21 23 24 24 24 24 24 25 25 25 25 LCS_GDT I 29 I 29 15 16 25 3 10 15 15 15 15 16 18 21 21 23 24 24 24 24 24 25 25 25 25 LCS_GDT Y 30 Y 30 15 16 25 4 9 15 15 15 15 16 18 21 21 23 24 24 24 24 24 25 25 25 25 LCS_GDT D 31 D 31 5 16 25 4 5 5 5 6 10 16 18 21 21 23 24 24 24 24 24 25 25 25 25 LCS_GDT K 32 K 32 5 6 25 4 5 5 5 5 8 16 17 19 21 23 24 24 24 24 24 25 25 25 25 LCS_GDT T 33 T 33 5 6 25 4 5 5 5 6 7 9 12 15 20 23 24 24 24 24 24 25 25 25 25 LCS_GDT K 34 K 34 4 5 25 3 4 7 10 11 14 16 18 21 21 23 24 24 24 24 24 25 25 25 25 LCS_GDT K 35 K 35 4 5 25 3 4 5 5 10 13 16 17 21 21 23 24 24 24 24 24 25 25 25 25 LCS_GDT Y 36 Y 36 4 5 25 3 4 5 5 6 7 7 7 9 11 11 12 13 16 22 23 25 25 25 25 LCS_GDT W 37 W 37 4 5 15 0 3 4 5 6 7 7 7 9 11 11 12 13 14 15 17 18 19 21 22 LCS_GDT V 38 V 38 4 4 15 0 3 4 4 4 5 6 6 9 11 11 12 13 14 15 17 18 19 21 22 LCS_GDT Y 39 Y 39 3 6 15 1 3 3 4 5 6 7 8 8 9 10 12 13 14 15 17 18 19 21 22 LCS_GDT Q 40 Q 40 3 6 15 3 3 3 4 5 6 6 8 8 8 9 10 13 14 15 17 18 19 21 22 LCS_GDT G 41 G 41 3 6 15 3 3 3 4 6 6 7 8 8 10 11 12 13 14 14 17 18 19 21 22 LCS_GDT K 42 K 42 5 6 15 5 5 5 5 6 6 7 8 9 11 11 12 13 14 15 17 18 19 21 22 LCS_GDT P 43 P 43 5 6 15 5 5 5 5 6 6 7 8 9 11 11 12 13 14 15 17 18 19 21 22 LCS_GDT V 44 V 44 5 6 15 5 5 5 5 6 6 7 8 9 11 11 12 13 14 15 17 18 19 21 22 LCS_GDT M 45 M 45 5 6 15 5 5 5 5 6 7 7 8 9 11 11 12 12 14 14 17 18 19 19 19 LCS_GDT P 46 P 46 5 6 15 5 5 5 5 6 7 7 8 9 11 11 12 12 14 14 17 17 19 19 19 LCS_AVERAGE LCS_A: 39.51 ( 24.98 30.29 63.27 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 13 15 15 15 15 16 18 21 21 23 24 24 24 24 24 25 25 25 25 GDT PERCENT_AT 25.71 37.14 42.86 42.86 42.86 42.86 45.71 51.43 60.00 60.00 65.71 68.57 68.57 68.57 68.57 68.57 71.43 71.43 71.43 71.43 GDT RMS_LOCAL 0.31 0.61 0.82 0.82 0.82 0.82 2.36 2.41 2.96 2.96 3.37 3.54 3.54 3.54 3.54 3.54 4.06 4.06 4.06 4.06 GDT RMS_ALL_AT 13.32 13.32 13.68 13.68 13.68 13.68 12.04 13.13 12.47 12.47 12.99 13.07 13.07 13.07 13.07 13.07 12.77 12.77 12.77 12.77 # Checking swapping # possible swapping detected: F 13 F 13 # possible swapping detected: Y 30 Y 30 # possible swapping detected: D 31 D 31 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 8.525 0 0.598 1.329 10.870 5.357 4.143 LGA F 13 F 13 6.859 0 0.590 1.297 11.357 12.500 5.065 LGA H 14 H 14 6.433 0 0.604 1.391 6.956 17.262 18.714 LGA Y 15 Y 15 4.895 0 0.342 0.639 16.931 43.095 15.635 LGA T 16 T 16 2.231 0 0.588 0.603 6.351 72.976 50.952 LGA V 17 V 17 1.456 0 0.048 1.259 3.808 81.548 73.605 LGA T 18 T 18 1.690 0 0.021 1.069 4.459 77.143 69.048 LGA D 19 D 19 1.117 0 0.094 1.089 5.031 81.429 69.405 LGA I 20 I 20 0.946 0 0.046 0.064 1.067 85.952 88.214 LGA K 21 K 21 1.015 0 0.065 0.916 2.792 83.690 77.090 LGA D 22 D 22 1.374 0 0.065 0.915 3.820 85.952 70.060 LGA L 23 L 23 0.758 0 0.062 0.286 2.354 95.238 87.381 LGA T 24 T 24 0.699 0 0.030 1.221 3.613 90.476 79.932 LGA K 25 K 25 1.168 0 0.086 1.071 3.019 85.952 77.143 LGA L 26 L 26 0.944 0 0.115 1.425 3.565 86.071 79.048 LGA G 27 G 27 1.471 0 0.046 0.046 2.427 77.381 77.381 LGA A 28 A 28 2.069 0 0.064 0.095 2.232 68.810 68.000 LGA I 29 I 29 3.305 0 0.608 1.169 6.542 42.381 41.488 LGA Y 30 Y 30 3.044 0 0.157 1.274 13.213 50.357 22.103 LGA D 31 D 31 3.921 0 0.075 1.019 8.912 52.143 30.595 LGA K 32 K 32 6.237 0 0.579 1.165 13.043 15.952 7.407 LGA T 33 T 33 7.516 0 0.659 0.891 11.406 19.286 11.633 LGA K 34 K 34 4.485 0 0.656 0.544 5.966 31.786 26.032 LGA K 35 K 35 4.874 0 0.693 1.174 7.769 21.429 27.831 LGA Y 36 Y 36 10.961 0 0.136 1.369 15.534 0.714 0.238 LGA W 37 W 37 17.306 0 0.543 1.324 25.480 0.000 0.000 LGA V 38 V 38 22.357 0 0.557 0.524 25.280 0.000 0.000 LGA Y 39 Y 39 25.023 0 0.196 1.229 35.846 0.000 0.000 LGA Q 40 Q 40 26.093 0 0.493 0.605 30.645 0.000 0.000 LGA G 41 G 41 22.874 0 0.255 0.255 23.964 0.000 0.000 LGA K 42 K 42 23.742 0 0.273 0.664 29.822 0.000 0.000 LGA P 43 P 43 23.263 0 0.080 0.324 24.061 0.000 0.000 LGA V 44 V 44 23.028 0 0.056 0.091 23.996 0.000 0.000 LGA M 45 M 45 24.636 0 0.120 0.261 28.707 0.000 0.000 LGA P 46 P 46 25.554 0 0.197 0.221 28.783 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 9.950 10.014 11.295 39.568 33.661 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 18 2.41 50.000 46.494 0.718 LGA_LOCAL RMSD: 2.408 Number of atoms: 18 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 13.125 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 9.950 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.079053 * X + 0.994187 * Y + 0.073088 * Z + -50.556583 Y_new = -0.954008 * X + -0.096718 * Y + 0.283751 * Z + -43.936615 Z_new = 0.289171 * X + -0.047295 * Y + 0.956109 * Z + -6.059345 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.653472 -0.293360 -0.049426 [DEG: -94.7370 -16.8083 -2.8319 ] ZXZ: 2.889494 0.297376 1.732916 [DEG: 165.5558 17.0384 99.2887 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS028_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS028_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 18 2.41 46.494 9.95 REMARK ---------------------------------------------------------- MOLECULE T0548TS028_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT 3gnp_A ATOM 87 N HIS 12 -35.864 -22.856 35.875 1.00 96.89 N ATOM 88 CA HIS 12 -37.052 -22.123 35.552 1.00 96.89 C ATOM 89 ND1 HIS 12 -37.097 -22.021 32.257 1.00 96.89 N ATOM 90 CG HIS 12 -37.246 -23.007 33.209 1.00 96.89 C ATOM 91 CB HIS 12 -37.951 -22.832 34.526 1.00 96.89 C ATOM 92 NE2 HIS 12 -36.071 -23.828 31.467 1.00 96.89 N ATOM 93 CD2 HIS 12 -36.616 -24.102 32.710 1.00 96.89 C ATOM 94 CE1 HIS 12 -36.386 -22.568 31.236 1.00 96.89 C ATOM 95 C HIS 12 -37.810 -21.947 36.822 1.00 96.89 C ATOM 96 O HIS 12 -38.436 -20.915 37.054 1.00 96.89 O ATOM 97 N PHE 13 -37.758 -22.971 37.691 1.00150.98 N ATOM 98 CA PHE 13 -38.423 -22.838 38.947 1.00150.98 C ATOM 99 CB PHE 13 -38.214 -24.031 39.900 1.00150.98 C ATOM 100 CG PHE 13 -39.255 -25.059 39.636 1.00150.98 C ATOM 101 CD1 PHE 13 -40.460 -24.935 40.284 1.00150.98 C ATOM 102 CD2 PHE 13 -39.058 -26.125 38.782 1.00150.98 C ATOM 103 CE1 PHE 13 -41.471 -25.842 40.085 1.00150.98 C ATOM 104 CE2 PHE 13 -40.071 -27.038 38.581 1.00150.98 C ATOM 105 CZ PHE 13 -41.277 -26.903 39.232 1.00150.98 C ATOM 106 C PHE 13 -37.860 -21.650 39.645 1.00150.98 C ATOM 107 O PHE 13 -38.598 -20.848 40.212 1.00150.98 O ATOM 108 N HIS 14 -36.526 -21.521 39.668 1.00 87.63 N ATOM 109 CA HIS 14 -35.955 -20.427 40.392 1.00 87.63 C ATOM 110 ND1 HIS 14 -34.403 -23.096 41.445 1.00 87.63 N ATOM 111 CG HIS 14 -34.338 -21.755 41.741 1.00 87.63 C ATOM 112 CB HIS 14 -34.471 -20.660 40.719 1.00 87.63 C ATOM 113 NE2 HIS 14 -34.121 -22.950 43.644 1.00 87.63 N ATOM 114 CD2 HIS 14 -34.164 -21.683 43.091 1.00 87.63 C ATOM 115 CE1 HIS 14 -34.268 -23.767 42.616 1.00 87.63 C ATOM 116 C HIS 14 -36.176 -19.090 39.730 1.00 87.63 C ATOM 117 O HIS 14 -36.525 -18.128 40.414 1.00 87.63 O ATOM 118 N TYR 15 -35.996 -18.962 38.397 1.00176.84 N ATOM 119 CA TYR 15 -36.148 -17.634 37.857 1.00176.84 C ATOM 120 CB TYR 15 -34.866 -17.141 37.169 1.00176.84 C ATOM 121 CG TYR 15 -33.812 -17.156 38.219 1.00176.84 C ATOM 122 CD1 TYR 15 -33.221 -18.344 38.582 1.00176.84 C ATOM 123 CD2 TYR 15 -33.420 -15.993 38.839 1.00176.84 C ATOM 124 CE1 TYR 15 -32.248 -18.372 39.551 1.00176.84 C ATOM 125 CE2 TYR 15 -32.444 -16.015 39.809 1.00176.84 C ATOM 126 CZ TYR 15 -31.860 -17.208 40.171 1.00176.84 C ATOM 127 OH TYR 15 -30.860 -17.252 41.167 1.00176.84 O ATOM 128 C TYR 15 -37.234 -17.614 36.825 1.00176.84 C ATOM 129 O TYR 15 -36.972 -17.466 35.630 1.00176.84 O ATOM 130 N THR 16 -38.500 -17.728 37.265 1.00111.13 N ATOM 131 CA THR 16 -39.607 -17.718 36.357 1.00111.13 C ATOM 132 CB THR 16 -40.902 -18.124 37.010 1.00111.13 C ATOM 133 OG1 THR 16 -41.240 -17.213 38.046 1.00111.13 O ATOM 134 CG2 THR 16 -40.768 -19.554 37.574 1.00111.13 C ATOM 135 C THR 16 -39.793 -16.336 35.824 1.00111.13 C ATOM 136 O THR 16 -40.089 -16.140 34.646 1.00111.13 O ATOM 137 N VAL 17 -39.599 -15.337 36.705 1.00102.75 N ATOM 138 CA VAL 17 -39.848 -13.968 36.375 1.00102.75 C ATOM 139 CB VAL 17 -39.600 -13.051 37.528 1.00102.75 C ATOM 140 CG1 VAL 17 -40.588 -13.419 38.650 1.00102.75 C ATOM 141 CG2 VAL 17 -38.122 -13.177 37.927 1.00102.75 C ATOM 142 C VAL 17 -38.949 -13.574 35.259 1.00102.75 C ATOM 143 O VAL 17 -39.354 -12.836 34.363 1.00102.75 O ATOM 144 N THR 18 -37.696 -14.054 35.275 1.00106.75 N ATOM 145 CA THR 18 -36.819 -13.635 34.229 1.00106.75 C ATOM 146 CB THR 18 -35.413 -14.156 34.381 1.00106.75 C ATOM 147 OG1 THR 18 -34.559 -13.513 33.449 1.00106.75 O ATOM 148 CG2 THR 18 -35.379 -15.674 34.149 1.00106.75 C ATOM 149 C THR 18 -37.380 -14.085 32.909 1.00106.75 C ATOM 150 O THR 18 -37.427 -13.302 31.960 1.00106.75 O ATOM 151 N ASP 19 -37.834 -15.350 32.803 1.00128.02 N ATOM 152 CA ASP 19 -38.352 -15.833 31.550 1.00128.02 C ATOM 153 CB ASP 19 -38.443 -17.375 31.443 1.00128.02 C ATOM 154 CG ASP 19 -39.317 -17.923 32.554 1.00128.02 C ATOM 155 OD1 ASP 19 -40.555 -18.020 32.343 1.00128.02 O ATOM 156 OD2 ASP 19 -38.752 -18.242 33.634 1.00128.02 O ATOM 157 C ASP 19 -39.677 -15.207 31.207 1.00128.02 C ATOM 158 O ASP 19 -39.974 -14.988 30.034 1.00128.02 O ATOM 159 N ILE 20 -40.510 -14.901 32.225 1.00 55.00 N ATOM 160 CA ILE 20 -41.817 -14.350 32.001 1.00 55.00 C ATOM 161 CB ILE 20 -42.579 -14.121 33.277 1.00 55.00 C ATOM 162 CG2 ILE 20 -43.824 -13.277 32.959 1.00 55.00 C ATOM 163 CG1 ILE 20 -42.898 -15.464 33.953 1.00 55.00 C ATOM 164 CD1 ILE 20 -43.440 -15.318 35.374 1.00 55.00 C ATOM 165 C ILE 20 -41.669 -13.034 31.322 1.00 55.00 C ATOM 166 O ILE 20 -42.379 -12.741 30.363 1.00 55.00 O ATOM 167 N LYS 21 -40.717 -12.219 31.802 1.00111.60 N ATOM 168 CA LYS 21 -40.483 -10.916 31.263 1.00111.60 C ATOM 169 CB LYS 21 -39.365 -10.189 32.030 1.00111.60 C ATOM 170 CG LYS 21 -39.304 -8.680 31.804 1.00111.60 C ATOM 171 CD LYS 21 -39.040 -8.287 30.356 1.00111.60 C ATOM 172 CE LYS 21 -38.996 -6.775 30.146 1.00111.60 C ATOM 173 NZ LYS 21 -37.701 -6.242 30.615 1.00111.60 N ATOM 174 C LYS 21 -40.058 -11.100 29.846 1.00111.60 C ATOM 175 O LYS 21 -40.379 -10.298 28.973 1.00111.60 O ATOM 176 N ASP 22 -39.302 -12.174 29.573 1.00 67.66 N ATOM 177 CA ASP 22 -38.845 -12.393 28.237 1.00 67.66 C ATOM 178 CB ASP 22 -37.904 -13.601 28.139 1.00 67.66 C ATOM 179 CG ASP 22 -37.167 -13.494 26.814 1.00 67.66 C ATOM 180 OD1 ASP 22 -37.308 -12.440 26.141 1.00 67.66 O ATOM 181 OD2 ASP 22 -36.444 -14.465 26.460 1.00 67.66 O ATOM 182 C ASP 22 -40.023 -12.635 27.340 1.00 67.66 C ATOM 183 O ASP 22 -40.074 -12.114 26.227 1.00 67.66 O ATOM 184 N LEU 23 -41.017 -13.425 27.801 1.00 51.34 N ATOM 185 CA LEU 23 -42.160 -13.726 26.981 1.00 51.34 C ATOM 186 CB LEU 23 -43.119 -14.777 27.579 1.00 51.34 C ATOM 187 CG LEU 23 -42.534 -16.207 27.614 1.00 51.34 C ATOM 188 CD1 LEU 23 -43.571 -17.225 28.122 1.00 51.34 C ATOM 189 CD2 LEU 23 -41.937 -16.610 26.252 1.00 51.34 C ATOM 190 C LEU 23 -42.939 -12.475 26.734 1.00 51.34 C ATOM 191 O LEU 23 -43.475 -12.284 25.642 1.00 51.34 O ATOM 192 N THR 24 -43.028 -11.586 27.745 1.00101.80 N ATOM 193 CA THR 24 -43.821 -10.395 27.597 1.00101.80 C ATOM 194 CB THR 24 -43.918 -9.535 28.837 1.00101.80 C ATOM 195 OG1 THR 24 -44.998 -8.619 28.723 1.00101.80 O ATOM 196 CG2 THR 24 -42.621 -8.740 29.027 1.00101.80 C ATOM 197 C THR 24 -43.237 -9.573 26.495 1.00101.80 C ATOM 198 O THR 24 -43.972 -8.970 25.715 1.00101.80 O ATOM 199 N LYS 25 -41.894 -9.543 26.380 1.00 97.50 N ATOM 200 CA LYS 25 -41.307 -8.750 25.336 1.00 97.50 C ATOM 201 CB LYS 25 -39.768 -8.790 25.259 1.00 97.50 C ATOM 202 CG LYS 25 -39.090 -7.756 26.161 1.00 97.50 C ATOM 203 CD LYS 25 -39.543 -6.317 25.874 1.00 97.50 C ATOM 204 CE LYS 25 -38.878 -5.233 26.730 1.00 97.50 C ATOM 205 NZ LYS 25 -39.215 -3.898 26.182 1.00 97.50 N ATOM 206 C LYS 25 -41.828 -9.241 24.026 1.00 97.50 C ATOM 207 O LYS 25 -42.054 -8.450 23.111 1.00 97.50 O ATOM 208 N LEU 26 -42.022 -10.567 23.897 1.00 34.75 N ATOM 209 CA LEU 26 -42.567 -11.130 22.692 1.00 34.75 C ATOM 210 CB LEU 26 -42.703 -12.664 22.737 1.00 34.75 C ATOM 211 CG LEU 26 -41.375 -13.427 22.915 1.00 34.75 C ATOM 212 CD1 LEU 26 -41.619 -14.945 22.937 1.00 34.75 C ATOM 213 CD2 LEU 26 -40.311 -12.993 21.889 1.00 34.75 C ATOM 214 C LEU 26 -43.960 -10.597 22.545 1.00 34.75 C ATOM 215 O LEU 26 -44.395 -10.258 21.445 1.00 34.75 O ATOM 216 N GLY 27 -44.691 -10.484 23.672 1.00 24.53 N ATOM 217 CA GLY 27 -46.046 -10.018 23.623 1.00 24.53 C ATOM 218 C GLY 27 -46.960 -11.196 23.517 1.00 24.53 C ATOM 219 O GLY 27 -48.096 -11.054 23.064 1.00 24.53 O ATOM 220 N ALA 28 -46.484 -12.392 23.921 1.00 36.90 N ATOM 221 CA ALA 28 -47.312 -13.562 23.842 1.00 36.90 C ATOM 222 CB ALA 28 -46.565 -14.881 24.105 1.00 36.90 C ATOM 223 C ALA 28 -48.417 -13.452 24.845 1.00 36.90 C ATOM 224 O ALA 28 -48.228 -12.969 25.961 1.00 36.90 O ATOM 225 N ILE 29 -49.627 -13.876 24.428 1.00141.03 N ATOM 226 CA ILE 29 -50.797 -13.856 25.252 1.00141.03 C ATOM 227 CB ILE 29 -52.067 -14.084 24.497 1.00141.03 C ATOM 228 CG2 ILE 29 -51.937 -15.367 23.656 1.00141.03 C ATOM 229 CG1 ILE 29 -53.231 -14.068 25.497 1.00141.03 C ATOM 230 CD1 ILE 29 -53.387 -12.733 26.225 1.00141.03 C ATOM 231 C ILE 29 -50.739 -14.863 26.353 1.00141.03 C ATOM 232 O ILE 29 -51.126 -14.564 27.480 1.00141.03 O ATOM 233 N TYR 30 -50.272 -16.095 26.071 1.00116.35 N ATOM 234 CA TYR 30 -50.333 -17.061 27.133 1.00116.35 C ATOM 235 CB TYR 30 -51.405 -18.146 26.948 1.00116.35 C ATOM 236 CG TYR 30 -52.726 -17.467 26.891 1.00116.35 C ATOM 237 CD1 TYR 30 -53.276 -16.904 28.019 1.00116.35 C ATOM 238 CD2 TYR 30 -53.395 -17.362 25.694 1.00116.35 C ATOM 239 CE1 TYR 30 -54.496 -16.275 27.956 1.00116.35 C ATOM 240 CE2 TYR 30 -54.616 -16.738 25.627 1.00116.35 C ATOM 241 CZ TYR 30 -55.165 -16.188 26.758 1.00116.35 C ATOM 242 OH TYR 30 -56.418 -15.543 26.696 1.00116.35 O ATOM 243 C TYR 30 -49.027 -17.769 27.284 1.00116.35 C ATOM 244 O TYR 30 -48.166 -17.732 26.406 1.00116.35 O ATOM 245 N ASP 31 -48.869 -18.424 28.457 1.00 72.96 N ATOM 246 CA ASP 31 -47.682 -19.124 28.853 1.00 72.96 C ATOM 247 CB ASP 31 -47.118 -18.536 30.165 1.00 72.96 C ATOM 248 CG ASP 31 -45.801 -19.200 30.552 1.00 72.96 C ATOM 249 OD1 ASP 31 -45.136 -19.779 29.654 1.00 72.96 O ATOM 250 OD2 ASP 31 -45.443 -19.136 31.760 1.00 72.96 O ATOM 251 C ASP 31 -48.073 -20.531 29.152 1.00 72.96 C ATOM 252 O ASP 31 -48.768 -20.783 30.136 1.00 72.96 O ATOM 253 N LYS 32 -47.641 -21.493 28.312 1.00142.41 N ATOM 254 CA LYS 32 -47.990 -22.851 28.594 1.00142.41 C ATOM 255 CB LYS 32 -48.282 -23.711 27.353 1.00142.41 C ATOM 256 CG LYS 32 -47.098 -23.835 26.399 1.00142.41 C ATOM 257 CD LYS 32 -47.371 -24.743 25.199 1.00142.41 C ATOM 258 CE LYS 32 -48.131 -24.047 24.065 1.00142.41 C ATOM 259 NZ LYS 32 -49.560 -23.887 24.421 1.00142.41 N ATOM 260 C LYS 32 -46.846 -23.452 29.325 1.00142.41 C ATOM 261 O LYS 32 -45.714 -23.517 28.846 1.00142.41 O ATOM 262 N THR 33 -47.151 -23.899 30.547 1.00127.25 N ATOM 263 CA THR 33 -46.182 -24.503 31.391 1.00127.25 C ATOM 264 CB THR 33 -45.797 -23.633 32.557 1.00127.25 C ATOM 265 OG1 THR 33 -46.944 -23.334 33.338 1.00127.25 O ATOM 266 CG2 THR 33 -45.162 -22.332 32.028 1.00127.25 C ATOM 267 C THR 33 -46.856 -25.727 31.887 1.00127.25 C ATOM 268 O THR 33 -47.918 -26.095 31.382 1.00127.25 O ATOM 269 N LYS 34 -46.257 -26.429 32.859 1.00133.64 N ATOM 270 CA LYS 34 -46.950 -27.614 33.248 1.00133.64 C ATOM 271 CB LYS 34 -46.283 -28.852 32.652 1.00133.64 C ATOM 272 CG LYS 34 -47.189 -30.073 32.536 1.00133.64 C ATOM 273 CD LYS 34 -48.156 -29.975 31.360 1.00133.64 C ATOM 274 CE LYS 34 -48.789 -31.309 30.980 1.00133.64 C ATOM 275 NZ LYS 34 -49.263 -31.232 29.583 1.00133.64 N ATOM 276 C LYS 34 -46.873 -27.747 34.731 1.00133.64 C ATOM 277 O LYS 34 -45.793 -27.662 35.312 1.00133.64 O ATOM 278 N LYS 35 -48.024 -27.937 35.405 1.00172.33 N ATOM 279 CA LYS 35 -47.887 -28.200 36.800 1.00172.33 C ATOM 280 CB LYS 35 -49.116 -27.832 37.654 1.00172.33 C ATOM 281 CG LYS 35 -50.298 -28.798 37.549 1.00172.33 C ATOM 282 CD LYS 35 -51.448 -28.433 38.491 1.00172.33 C ATOM 283 CE LYS 35 -51.021 -27.570 39.680 1.00172.33 C ATOM 284 NZ LYS 35 -50.897 -26.157 39.251 1.00172.33 N ATOM 285 C LYS 35 -47.661 -29.671 36.866 1.00172.33 C ATOM 286 O LYS 35 -48.349 -30.433 36.190 1.00172.33 O ATOM 287 N TYR 36 -46.668 -30.101 37.670 1.00119.71 N ATOM 288 CA TYR 36 -46.342 -31.495 37.736 1.00119.71 C ATOM 289 CB TYR 36 -45.115 -31.765 38.623 1.00119.71 C ATOM 290 CG TYR 36 -44.525 -33.090 38.280 1.00119.71 C ATOM 291 CD1 TYR 36 -43.600 -33.164 37.265 1.00119.71 C ATOM 292 CD2 TYR 36 -44.864 -34.241 38.956 1.00119.71 C ATOM 293 CE1 TYR 36 -43.022 -34.360 36.920 1.00119.71 C ATOM 294 CE2 TYR 36 -44.290 -35.445 38.616 1.00119.71 C ATOM 295 CZ TYR 36 -43.367 -35.503 37.596 1.00119.71 C ATOM 296 OH TYR 36 -42.771 -36.731 37.238 1.00119.71 O ATOM 297 C TYR 36 -47.518 -32.125 38.389 1.00119.71 C ATOM 298 O TYR 36 -47.930 -31.703 39.459 1.00119.71 O ATOM 299 N TRP 37 -48.110 -33.154 37.760 1.00 77.92 N ATOM 300 CA TRP 37 -49.278 -33.733 38.343 1.00 77.92 C ATOM 301 CB TRP 37 -49.807 -34.902 37.494 1.00 77.92 C ATOM 302 CG TRP 37 -51.091 -35.528 37.978 1.00 77.92 C ATOM 303 CD2 TRP 37 -51.951 -36.298 37.124 1.00 77.92 C ATOM 304 CD1 TRP 37 -51.692 -35.497 39.206 1.00 77.92 C ATOM 305 NE1 TRP 37 -52.872 -36.202 39.163 1.00 77.92 N ATOM 306 CE2 TRP 37 -53.045 -36.703 37.889 1.00 77.92 C ATOM 307 CE3 TRP 37 -51.834 -36.647 35.809 1.00 77.92 C ATOM 308 CZ2 TRP 37 -54.042 -37.462 37.343 1.00 77.92 C ATOM 309 CZ3 TRP 37 -52.843 -37.408 35.261 1.00 77.92 C ATOM 310 CH2 TRP 37 -53.929 -37.809 36.014 1.00 77.92 C ATOM 311 C TRP 37 -48.879 -34.255 39.678 1.00 77.92 C ATOM 312 O TRP 37 -49.480 -33.911 40.696 1.00 77.92 O ATOM 313 N VAL 38 -47.798 -35.058 39.712 1.00 71.51 N ATOM 314 CA VAL 38 -47.379 -35.598 40.969 1.00 71.51 C ATOM 315 CB VAL 38 -46.160 -36.471 40.883 1.00 71.51 C ATOM 316 CG1 VAL 38 -45.700 -36.774 42.322 1.00 71.51 C ATOM 317 CG2 VAL 38 -46.500 -37.742 40.080 1.00 71.51 C ATOM 318 C VAL 38 -47.058 -34.466 41.887 1.00 71.51 C ATOM 319 O VAL 38 -47.604 -34.393 42.984 1.00 71.51 O ATOM 320 N TYR 39 -46.185 -33.523 41.480 1.00271.04 N ATOM 321 CA TYR 39 -45.949 -32.431 42.380 1.00271.04 C ATOM 322 CB TYR 39 -44.455 -32.187 42.673 1.00271.04 C ATOM 323 CG TYR 39 -43.999 -33.333 43.521 1.00271.04 C ATOM 324 CD1 TYR 39 -44.144 -33.289 44.890 1.00271.04 C ATOM 325 CD2 TYR 39 -43.450 -34.463 42.957 1.00271.04 C ATOM 326 CE1 TYR 39 -43.738 -34.342 45.681 1.00271.04 C ATOM 327 CE2 TYR 39 -43.040 -35.518 43.739 1.00271.04 C ATOM 328 CZ TYR 39 -43.183 -35.458 45.105 1.00271.04 C ATOM 329 OH TYR 39 -42.763 -36.546 45.900 1.00271.04 O ATOM 330 C TYR 39 -46.568 -31.218 41.765 1.00271.04 C ATOM 331 O TYR 39 -45.917 -30.481 41.031 1.00271.04 O ATOM 332 N GLN 40 -47.859 -30.965 42.079 1.00221.59 N ATOM 333 CA GLN 40 -48.610 -29.931 41.411 1.00221.59 C ATOM 334 CB GLN 40 -50.138 -30.121 41.458 1.00221.59 C ATOM 335 CG GLN 40 -50.666 -31.187 40.488 1.00221.59 C ATOM 336 CD GLN 40 -52.188 -31.268 40.629 1.00221.59 C ATOM 337 OE1 GLN 40 -52.719 -31.712 41.646 1.00221.59 O ATOM 338 NE2 GLN 40 -52.921 -30.831 39.568 1.00221.59 N ATOM 339 C GLN 40 -48.284 -28.555 41.882 1.00221.59 C ATOM 340 O GLN 40 -47.855 -28.339 43.014 1.00221.59 O ATOM 341 N GLY 41 -48.490 -27.590 40.961 1.00123.01 N ATOM 342 CA GLY 41 -48.226 -26.199 41.185 1.00123.01 C ATOM 343 C GLY 41 -49.128 -25.720 42.259 1.00123.01 C ATOM 344 O GLY 41 -48.734 -24.920 43.101 1.00123.01 O ATOM 345 N LYS 42 -50.387 -26.185 42.213 1.00255.90 N ATOM 346 CA LYS 42 -51.337 -25.856 43.220 1.00255.90 C ATOM 347 CB LYS 42 -52.722 -25.578 42.607 1.00255.90 C ATOM 348 CG LYS 42 -53.565 -24.652 43.480 1.00255.90 C ATOM 349 CD LYS 42 -53.029 -23.218 43.503 1.00255.90 C ATOM 350 CE LYS 42 -53.853 -22.270 42.631 1.00255.90 C ATOM 351 NZ LYS 42 -53.480 -20.862 42.893 1.00255.90 N ATOM 352 C LYS 42 -51.227 -27.063 44.119 1.00255.90 C ATOM 353 O LYS 42 -50.088 -27.514 44.170 1.00255.90 O ATOM 354 N PRO 43 -52.170 -27.637 44.871 1.00105.67 N ATOM 355 CA PRO 43 -51.838 -28.778 45.686 1.00105.67 C ATOM 356 CD PRO 43 -53.607 -27.573 44.644 1.00105.67 C ATOM 357 CB PRO 43 -53.140 -29.231 46.344 1.00105.67 C ATOM 358 CG PRO 43 -54.195 -28.827 45.312 1.00105.67 C ATOM 359 C PRO 43 -51.215 -29.870 44.872 1.00105.67 C ATOM 360 O PRO 43 -51.778 -30.303 43.868 1.00105.67 O ATOM 361 N VAL 44 -50.046 -30.324 45.346 1.00190.15 N ATOM 362 CA VAL 44 -49.222 -31.305 44.724 1.00190.15 C ATOM 363 CB VAL 44 -47.907 -31.373 45.440 1.00190.15 C ATOM 364 CG1 VAL 44 -47.146 -32.644 45.046 1.00190.15 C ATOM 365 CG2 VAL 44 -47.160 -30.066 45.152 1.00190.15 C ATOM 366 C VAL 44 -49.905 -32.606 44.883 1.00190.15 C ATOM 367 O VAL 44 -50.237 -33.000 46.000 1.00190.15 O ATOM 368 N MET 45 -50.157 -33.312 43.761 1.00152.87 N ATOM 369 CA MET 45 -50.830 -34.552 43.953 1.00152.87 C ATOM 370 CB MET 45 -52.116 -34.737 43.133 1.00152.87 C ATOM 371 CG MET 45 -52.755 -36.095 43.431 1.00152.87 C ATOM 372 SD MET 45 -54.191 -36.521 42.404 1.00152.87 S ATOM 373 CE MET 45 -55.372 -35.497 43.327 1.00152.87 C ATOM 374 C MET 45 -49.946 -35.684 43.570 1.00152.87 C ATOM 375 O MET 45 -49.800 -36.060 42.408 1.00152.87 O ATOM 376 N PRO 46 -49.340 -36.196 44.595 1.00177.49 N ATOM 377 CA PRO 46 -48.642 -37.441 44.486 1.00177.49 C ATOM 378 CD PRO 46 -48.668 -35.295 45.520 1.00177.49 C ATOM 379 CB PRO 46 -47.548 -37.429 45.550 1.00177.49 C ATOM 380 CG PRO 46 -47.311 -35.937 45.827 1.00177.49 C ATOM 381 C PRO 46 -49.755 -38.370 44.832 1.00177.49 C ATOM 382 O PRO 46 -50.914 -37.984 44.678 1.00177.49 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 77.83 52.9 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 54.58 67.6 34 100.0 34 ARMSMC SURFACE . . . . . . . . 78.75 50.0 56 100.0 56 ARMSMC BURIED . . . . . . . . 73.37 66.7 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 88.36 43.8 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 89.27 41.4 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 97.76 35.3 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 94.09 37.0 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 46.46 80.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 83.38 36.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 72.73 38.1 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 77.22 38.5 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 84.93 36.4 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 70.93 33.3 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 84.10 37.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 87.67 42.9 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 82.44 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 84.10 37.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 59.77 66.7 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 59.77 66.7 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 18.31 100.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 59.77 66.7 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.95 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.95 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.2843 CRMSCA SECONDARY STRUCTURE . . 8.16 17 100.0 17 CRMSCA SURFACE . . . . . . . . 9.91 29 100.0 29 CRMSCA BURIED . . . . . . . . 10.14 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 10.08 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 8.30 85 100.0 85 CRMSMC SURFACE . . . . . . . . 10.01 143 100.0 143 CRMSMC BURIED . . . . . . . . 10.41 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 12.42 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 12.37 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 12.02 84 100.0 84 CRMSSC SURFACE . . . . . . . . 11.89 127 100.0 127 CRMSSC BURIED . . . . . . . . 14.49 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 11.35 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 10.50 152 100.0 152 CRMSALL SURFACE . . . . . . . . 11.02 243 100.0 243 CRMSALL BURIED . . . . . . . . 12.74 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 111.408 0.834 0.851 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 94.357 0.845 0.860 17 100.0 17 ERRCA SURFACE . . . . . . . . 115.586 0.846 0.862 29 100.0 29 ERRCA BURIED . . . . . . . . 91.212 0.772 0.801 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 111.865 0.835 0.852 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 94.216 0.842 0.858 85 100.0 85 ERRMC SURFACE . . . . . . . . 116.244 0.848 0.863 143 100.0 143 ERRMC BURIED . . . . . . . . 90.996 0.772 0.800 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 118.501 0.826 0.844 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 122.349 0.834 0.850 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 99.455 0.808 0.830 84 100.0 84 ERRSC SURFACE . . . . . . . . 123.303 0.845 0.859 127 100.0 127 ERRSC BURIED . . . . . . . . 97.473 0.741 0.776 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 115.132 0.829 0.847 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 97.117 0.823 0.842 152 100.0 152 ERRALL SURFACE . . . . . . . . 119.605 0.845 0.860 243 100.0 243 ERRALL BURIED . . . . . . . . 94.621 0.756 0.788 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 3 8 20 35 35 DISTCA CA (P) 0.00 0.00 8.57 22.86 57.14 35 DISTCA CA (RMS) 0.00 0.00 2.15 3.40 6.59 DISTCA ALL (N) 0 11 26 50 147 296 296 DISTALL ALL (P) 0.00 3.72 8.78 16.89 49.66 296 DISTALL ALL (RMS) 0.00 1.69 2.14 3.08 6.59 DISTALL END of the results output