####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 33 ( 275), selected 33 , name T0548TS026_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 33 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS026_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 14 - 35 4.45 11.04 LONGEST_CONTINUOUS_SEGMENT: 22 15 - 36 4.80 10.50 LCS_AVERAGE: 57.66 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 14 - 30 1.72 13.95 LCS_AVERAGE: 38.18 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 14 - 28 0.98 14.80 LONGEST_CONTINUOUS_SEGMENT: 15 15 - 29 0.79 14.94 LCS_AVERAGE: 28.66 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 33 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 14 H 14 15 17 22 3 4 9 14 16 16 16 18 18 19 19 19 20 20 20 21 21 23 24 25 LCS_GDT Y 15 Y 15 15 17 22 3 13 14 15 16 17 17 18 19 19 19 19 20 20 21 23 24 25 25 26 LCS_GDT T 16 T 16 15 17 22 12 13 14 15 16 17 17 18 19 19 19 19 21 23 23 23 24 25 25 26 LCS_GDT V 17 V 17 15 17 22 12 13 14 15 16 17 17 18 19 19 19 19 21 23 23 23 24 25 25 26 LCS_GDT T 18 T 18 15 17 22 12 13 14 15 16 17 17 18 19 19 19 19 21 23 23 23 24 25 25 26 LCS_GDT D 19 D 19 15 17 22 12 13 14 15 16 17 17 18 19 19 19 19 21 23 23 23 24 25 25 26 LCS_GDT I 20 I 20 15 17 22 12 13 14 15 16 17 17 18 19 19 19 19 21 23 23 23 24 25 25 26 LCS_GDT K 21 K 21 15 17 22 12 13 14 15 16 17 17 18 19 19 19 19 21 23 23 23 24 25 25 26 LCS_GDT D 22 D 22 15 17 22 12 13 14 15 16 17 17 18 19 19 19 19 21 23 23 23 24 25 25 26 LCS_GDT L 23 L 23 15 17 22 12 13 14 15 16 17 17 18 19 19 19 19 21 23 23 23 24 25 25 26 LCS_GDT T 24 T 24 15 17 22 12 13 14 15 16 17 17 18 19 19 19 19 21 23 23 23 24 25 25 26 LCS_GDT K 25 K 25 15 17 22 12 13 14 15 16 17 17 18 19 19 19 19 21 23 23 23 24 25 25 26 LCS_GDT L 26 L 26 15 17 22 12 13 14 15 16 17 17 18 19 19 19 19 21 23 23 23 24 25 25 26 LCS_GDT G 27 G 27 15 17 22 12 13 14 15 16 17 17 18 19 19 19 19 21 23 23 23 24 25 25 26 LCS_GDT A 28 A 28 15 17 22 10 13 14 15 16 17 17 18 19 19 19 19 21 23 23 23 24 25 25 26 LCS_GDT I 29 I 29 15 17 22 3 5 7 15 16 17 17 18 19 19 19 19 21 23 23 23 24 25 25 26 LCS_GDT Y 30 Y 30 5 17 22 3 5 5 6 14 17 17 18 19 19 19 19 21 23 23 23 24 25 25 26 LCS_GDT D 31 D 31 5 8 22 3 5 5 6 7 13 16 18 19 19 19 19 21 23 23 23 24 25 25 26 LCS_GDT K 32 K 32 5 8 22 3 5 5 8 14 17 17 18 19 19 19 19 20 20 21 23 24 25 25 26 LCS_GDT T 33 T 33 4 8 22 3 4 5 6 7 11 15 16 19 19 19 19 21 23 23 23 24 25 25 26 LCS_GDT K 34 K 34 4 8 22 4 4 5 8 9 9 10 11 14 15 18 19 21 23 23 23 24 25 25 26 LCS_GDT K 35 K 35 3 10 22 3 4 4 10 11 11 12 12 14 15 15 18 21 23 23 23 24 25 25 26 LCS_GDT Y 36 Y 36 4 10 22 3 3 4 6 9 11 12 12 12 12 14 16 20 23 23 23 24 25 25 26 LCS_GDT W 37 W 37 4 10 16 3 3 5 6 11 11 12 12 12 12 13 13 13 15 19 20 23 24 25 26 LCS_GDT V 38 V 38 4 10 16 3 4 8 10 11 11 12 12 12 12 14 14 17 19 20 21 23 23 25 26 LCS_GDT Y 39 Y 39 4 10 16 3 4 5 10 11 11 12 12 12 12 14 14 17 18 19 20 22 23 25 25 LCS_GDT Q 40 Q 40 7 10 16 4 7 8 10 11 11 12 12 12 12 14 14 17 19 19 20 22 23 25 25 LCS_GDT G 41 G 41 7 10 16 4 7 8 10 11 11 12 12 12 12 14 14 17 19 20 21 22 23 25 25 LCS_GDT K 42 K 42 7 10 16 4 7 8 10 11 11 12 12 12 12 14 14 17 19 20 21 22 23 25 25 LCS_GDT P 43 P 43 7 10 16 4 7 8 10 11 11 12 12 15 15 15 16 17 20 21 22 24 25 25 26 LCS_GDT V 44 V 44 7 10 16 3 7 8 10 11 11 12 14 15 15 15 18 20 23 23 23 24 25 25 26 LCS_GDT M 45 M 45 7 10 16 3 7 8 10 11 11 12 14 15 15 18 19 21 23 23 23 24 25 25 26 LCS_GDT P 46 P 46 7 10 16 3 7 8 10 11 11 12 12 12 12 13 16 21 23 23 23 24 25 25 26 LCS_AVERAGE LCS_A: 41.50 ( 28.66 38.18 57.66 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 13 14 15 16 17 17 18 19 19 19 19 21 23 23 23 24 25 25 26 GDT PERCENT_AT 34.29 37.14 40.00 42.86 45.71 48.57 48.57 51.43 54.29 54.29 54.29 54.29 60.00 65.71 65.71 65.71 68.57 71.43 71.43 74.29 GDT RMS_LOCAL 0.37 0.40 0.59 0.79 1.09 1.95 1.95 2.12 2.80 2.43 2.43 2.43 4.42 4.91 4.91 4.75 5.13 5.33 5.33 5.67 GDT RMS_ALL_AT 15.31 15.51 15.15 14.94 14.68 12.95 12.95 13.07 11.69 12.53 12.53 12.53 10.14 9.69 9.69 10.38 9.82 9.85 9.85 9.56 # Checking swapping # possible swapping detected: Y 15 Y 15 # possible swapping detected: Y 30 Y 30 # possible swapping detected: D 31 D 31 # possible swapping detected: Y 39 Y 39 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 14 H 14 3.598 0 0.588 0.486 8.529 47.262 33.476 LGA Y 15 Y 15 1.938 0 0.078 0.722 4.762 72.976 57.063 LGA T 16 T 16 1.348 0 0.064 1.053 2.791 79.286 75.510 LGA V 17 V 17 1.306 0 0.019 1.023 2.628 81.429 75.510 LGA T 18 T 18 1.070 0 0.041 1.019 3.546 88.214 78.639 LGA D 19 D 19 0.828 0 0.039 0.970 3.100 95.238 79.226 LGA I 20 I 20 1.564 0 0.030 0.089 3.082 77.262 67.262 LGA K 21 K 21 2.069 0 0.051 1.250 8.983 70.952 44.339 LGA D 22 D 22 1.188 0 0.059 0.919 3.370 83.690 73.512 LGA L 23 L 23 0.569 0 0.029 0.206 1.559 90.476 87.143 LGA T 24 T 24 1.499 0 0.033 1.139 3.931 77.143 73.605 LGA K 25 K 25 1.890 0 0.111 0.656 3.577 68.929 65.132 LGA L 26 L 26 1.088 0 0.068 1.420 3.849 81.429 72.679 LGA G 27 G 27 1.135 0 0.096 0.096 1.135 83.690 83.690 LGA A 28 A 28 1.699 0 0.559 0.559 4.179 66.310 67.619 LGA I 29 I 29 2.147 0 0.044 1.227 6.504 59.405 44.107 LGA Y 30 Y 30 3.772 0 0.137 1.315 15.962 56.071 21.508 LGA D 31 D 31 6.203 0 0.294 1.380 11.741 17.500 8.929 LGA K 32 K 32 4.471 0 0.045 1.486 8.769 21.786 33.862 LGA T 33 T 33 10.943 0 0.632 0.937 14.523 1.190 0.680 LGA K 34 K 34 14.787 0 0.203 1.180 20.151 0.000 0.000 LGA K 35 K 35 18.044 0 0.653 0.872 26.537 0.000 0.000 LGA Y 36 Y 36 18.709 0 0.255 1.329 24.754 0.000 0.000 LGA W 37 W 37 18.191 0 0.207 1.091 19.922 0.000 0.000 LGA V 38 V 38 19.713 0 0.040 1.211 21.688 0.000 0.000 LGA Y 39 Y 39 25.014 0 0.579 0.523 34.204 0.000 0.000 LGA Q 40 Q 40 28.084 0 0.358 1.129 32.398 0.000 0.000 LGA G 41 G 41 27.432 0 0.094 0.094 27.789 0.000 0.000 LGA K 42 K 42 24.487 0 0.117 0.786 34.478 0.000 0.000 LGA P 43 P 43 18.499 0 0.040 0.125 22.540 0.000 0.000 LGA V 44 V 44 16.166 0 0.103 1.145 18.091 0.000 0.000 LGA M 45 M 45 14.592 0 0.087 1.305 16.390 0.000 0.000 LGA P 46 P 46 14.301 0 0.092 0.108 15.321 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 33 132 132 100.00 275 275 100.00 35 SUMMARY(RMSD_GDC): 8.459 8.287 10.327 37.721 32.671 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 33 35 4.0 18 2.12 49.286 46.989 0.813 LGA_LOCAL RMSD: 2.115 Number of atoms: 18 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 13.073 Number of assigned atoms: 33 Std_ASGN_ATOMS RMSD: 8.459 Standard rmsd on all 33 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.112364 * X + 0.766785 * Y + 0.631993 * Z + -104.232666 Y_new = 0.288472 * X + 0.583457 * Y + -0.759185 * Z + -10.865186 Z_new = -0.950872 * X + 0.267617 * Y + -0.155637 * Z + 36.613247 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.199363 1.256042 2.097549 [DEG: 68.7184 71.9659 120.1807 ] ZXZ: 0.694224 1.727068 -1.296449 [DEG: 39.7761 98.9537 -74.2811 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS026_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS026_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 33 35 4.0 18 2.12 46.989 8.46 REMARK ---------------------------------------------------------- MOLECULE T0548TS026_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT 1JBG_A ATOM 1 N HIS 14 -37.436 -22.679 38.501 1.00 67.09 N ATOM 2 CA HIS 14 -36.287 -22.782 37.574 1.00 67.09 C ATOM 3 ND1 HIS 14 -35.110 -24.132 34.645 1.00 67.09 N ATOM 4 CG HIS 14 -35.094 -24.366 35.999 1.00 67.09 C ATOM 5 CB HIS 14 -36.279 -24.163 36.895 1.00 67.09 C ATOM 6 NE2 HIS 14 -33.052 -24.811 35.140 1.00 67.09 N ATOM 7 CD2 HIS 14 -33.826 -24.781 36.288 1.00 67.09 C ATOM 8 CE1 HIS 14 -33.868 -24.411 34.180 1.00 67.09 C ATOM 9 C HIS 14 -36.350 -21.707 36.543 1.00 67.09 C ATOM 10 O HIS 14 -35.352 -21.038 36.280 1.00 67.09 O ATOM 11 N TYR 15 -37.536 -21.493 35.937 1.00 61.61 N ATOM 12 CA TYR 15 -37.632 -20.449 34.960 1.00 61.61 C ATOM 13 CB TYR 15 -38.931 -20.463 34.130 1.00 61.61 C ATOM 14 CG TYR 15 -38.852 -21.654 33.240 1.00 61.61 C ATOM 15 CD1 TYR 15 -38.210 -21.559 32.026 1.00 61.61 C ATOM 16 CD2 TYR 15 -39.395 -22.861 33.613 1.00 61.61 C ATOM 17 CE1 TYR 15 -38.119 -22.647 31.192 1.00 61.61 C ATOM 18 CE2 TYR 15 -39.307 -23.955 32.781 1.00 61.61 C ATOM 19 CZ TYR 15 -38.669 -23.849 31.570 1.00 61.61 C ATOM 20 OH TYR 15 -38.576 -24.970 30.718 1.00 61.61 O ATOM 21 C TYR 15 -37.548 -19.156 35.697 1.00 61.61 C ATOM 22 O TYR 15 -38.222 -18.960 36.708 1.00 61.61 O ATOM 23 N THR 16 -36.692 -18.242 35.211 1.00 92.42 N ATOM 24 CA THR 16 -36.508 -17.001 35.904 1.00 92.42 C ATOM 25 CB THR 16 -35.254 -16.273 35.527 1.00 92.42 C ATOM 26 OG1 THR 16 -35.068 -15.153 36.379 1.00 92.42 O ATOM 27 CG2 THR 16 -35.374 -15.817 34.068 1.00 92.42 C ATOM 28 C THR 16 -37.658 -16.096 35.625 1.00 92.42 C ATOM 29 O THR 16 -38.322 -16.189 34.593 1.00 92.42 O ATOM 30 N VAL 17 -37.919 -15.190 36.591 1.00 88.52 N ATOM 31 CA VAL 17 -38.990 -14.238 36.541 1.00 88.52 C ATOM 32 CB VAL 17 -39.071 -13.408 37.791 1.00 88.52 C ATOM 33 CG1 VAL 17 -37.693 -12.781 38.075 1.00 88.52 C ATOM 34 CG2 VAL 17 -40.167 -12.349 37.586 1.00 88.52 C ATOM 35 C VAL 17 -38.788 -13.290 35.403 1.00 88.52 C ATOM 36 O VAL 17 -39.708 -13.028 34.629 1.00 88.52 O ATOM 37 N THR 18 -37.559 -12.770 35.257 1.00 90.48 N ATOM 38 CA THR 18 -37.311 -11.782 34.253 1.00 90.48 C ATOM 39 CB THR 18 -35.913 -11.240 34.286 1.00 90.48 C ATOM 40 OG1 THR 18 -34.972 -12.281 34.069 1.00 90.48 O ATOM 41 CG2 THR 18 -35.677 -10.567 35.648 1.00 90.48 C ATOM 42 C THR 18 -37.552 -12.384 32.916 1.00 90.48 C ATOM 43 O THR 18 -38.125 -11.742 32.038 1.00 90.48 O ATOM 44 N ASP 19 -37.126 -13.647 32.724 1.00 76.58 N ATOM 45 CA ASP 19 -37.288 -14.286 31.452 1.00 76.58 C ATOM 46 CB ASP 19 -36.749 -15.731 31.462 1.00 76.58 C ATOM 47 CG ASP 19 -36.819 -16.371 30.076 1.00 76.58 C ATOM 48 OD1 ASP 19 -37.781 -16.111 29.305 1.00 76.58 O ATOM 49 OD2 ASP 19 -35.883 -17.156 29.775 1.00 76.58 O ATOM 50 C ASP 19 -38.749 -14.356 31.153 1.00 76.58 C ATOM 51 O ASP 19 -39.188 -13.998 30.061 1.00 76.58 O ATOM 52 N ILE 20 -39.549 -14.789 32.138 1.00 47.63 N ATOM 53 CA ILE 20 -40.950 -14.980 31.914 1.00 47.63 C ATOM 54 CB ILE 20 -41.654 -15.560 33.100 1.00 47.63 C ATOM 55 CG2 ILE 20 -43.168 -15.383 32.900 1.00 47.63 C ATOM 56 CG1 ILE 20 -41.191 -17.016 33.296 1.00 47.63 C ATOM 57 CD1 ILE 20 -41.641 -17.647 34.612 1.00 47.63 C ATOM 58 C ILE 20 -41.588 -13.681 31.553 1.00 47.63 C ATOM 59 O ILE 20 -42.471 -13.629 30.698 1.00 47.63 O ATOM 60 N LYS 21 -41.175 -12.588 32.209 1.00108.80 N ATOM 61 CA LYS 21 -41.770 -11.325 31.901 1.00108.80 C ATOM 62 CB LYS 21 -41.243 -10.193 32.792 1.00108.80 C ATOM 63 CG LYS 21 -41.550 -10.448 34.268 1.00108.80 C ATOM 64 CD LYS 21 -43.037 -10.653 34.564 1.00108.80 C ATOM 65 CE LYS 21 -43.306 -11.140 35.989 1.00108.80 C ATOM 66 NZ LYS 21 -43.142 -10.021 36.942 1.00108.80 N ATOM 67 C LYS 21 -41.444 -11.008 30.479 1.00108.80 C ATOM 68 O LYS 21 -42.264 -10.464 29.741 1.00108.80 O ATOM 69 N ASP 22 -40.230 -11.372 30.045 1.00 63.48 N ATOM 70 CA ASP 22 -39.824 -11.039 28.716 1.00 63.48 C ATOM 71 CB ASP 22 -38.391 -11.506 28.410 1.00 63.48 C ATOM 72 CG ASP 22 -37.889 -10.705 27.220 1.00 63.48 C ATOM 73 OD1 ASP 22 -38.699 -9.930 26.646 1.00 63.48 O ATOM 74 OD2 ASP 22 -36.686 -10.850 26.871 1.00 63.48 O ATOM 75 C ASP 22 -40.769 -11.698 27.756 1.00 63.48 C ATOM 76 O ASP 22 -41.145 -11.102 26.748 1.00 63.48 O ATOM 77 N LEU 23 -41.196 -12.944 28.048 1.00 50.94 N ATOM 78 CA LEU 23 -42.087 -13.644 27.166 1.00 50.94 C ATOM 79 CB LEU 23 -42.384 -15.086 27.612 1.00 50.94 C ATOM 80 CG LEU 23 -41.202 -16.045 27.390 1.00 50.94 C ATOM 81 CD1 LEU 23 -41.553 -17.465 27.855 1.00 50.94 C ATOM 82 CD2 LEU 23 -40.711 -16.002 25.932 1.00 50.94 C ATOM 83 C LEU 23 -43.397 -12.928 27.054 1.00 50.94 C ATOM 84 O LEU 23 -43.924 -12.771 25.956 1.00 50.94 O ATOM 85 N THR 24 -43.962 -12.452 28.177 1.00 93.91 N ATOM 86 CA THR 24 -45.244 -11.814 28.067 1.00 93.91 C ATOM 87 CB THR 24 -45.845 -11.396 29.382 1.00 93.91 C ATOM 88 OG1 THR 24 -47.154 -10.896 29.162 1.00 93.91 O ATOM 89 CG2 THR 24 -44.979 -10.311 30.035 1.00 93.91 C ATOM 90 C THR 24 -45.110 -10.602 27.200 1.00 93.91 C ATOM 91 O THR 24 -45.979 -10.330 26.374 1.00 93.91 O ATOM 92 N LYS 25 -44.007 -9.842 27.344 1.00106.53 N ATOM 93 CA LYS 25 -43.865 -8.651 26.557 1.00106.53 C ATOM 94 CB LYS 25 -42.565 -7.879 26.842 1.00106.53 C ATOM 95 CG LYS 25 -42.508 -6.528 26.121 1.00106.53 C ATOM 96 CD LYS 25 -41.288 -5.677 26.480 1.00106.53 C ATOM 97 CE LYS 25 -40.264 -5.576 25.345 1.00106.53 C ATOM 98 NZ LYS 25 -39.781 -6.922 24.961 1.00106.53 N ATOM 99 C LYS 25 -43.829 -9.028 25.109 1.00106.53 C ATOM 100 O LYS 25 -44.438 -8.367 24.270 1.00106.53 O ATOM 101 N LEU 26 -43.105 -10.117 24.799 1.00 58.25 N ATOM 102 CA LEU 26 -42.927 -10.627 23.470 1.00 58.25 C ATOM 103 CB LEU 26 -41.978 -11.836 23.445 1.00 58.25 C ATOM 104 CG LEU 26 -40.531 -11.486 23.829 1.00 58.25 C ATOM 105 CD1 LEU 26 -39.654 -12.746 23.876 1.00 58.25 C ATOM 106 CD2 LEU 26 -39.952 -10.405 22.898 1.00 58.25 C ATOM 107 C LEU 26 -44.247 -11.087 22.949 1.00 58.25 C ATOM 108 O LEU 26 -44.511 -11.018 21.751 1.00 58.25 O ATOM 109 N GLY 27 -45.116 -11.597 23.837 1.00 24.87 N ATOM 110 CA GLY 27 -46.371 -12.097 23.366 1.00 24.87 C ATOM 111 C GLY 27 -46.105 -13.522 23.055 1.00 24.87 C ATOM 112 O GLY 27 -46.943 -14.231 22.500 1.00 24.87 O ATOM 113 N ALA 28 -44.887 -13.967 23.416 1.00 43.01 N ATOM 114 CA ALA 28 -44.509 -15.321 23.174 1.00 43.01 C ATOM 115 CB ALA 28 -43.088 -15.632 23.674 1.00 43.01 C ATOM 116 C ALA 28 -45.453 -16.170 23.938 1.00 43.01 C ATOM 117 O ALA 28 -46.021 -17.121 23.405 1.00 43.01 O ATOM 118 N ILE 29 -45.652 -15.823 25.221 1.00105.99 N ATOM 119 CA ILE 29 -46.603 -16.533 26.009 1.00105.99 C ATOM 120 CB ILE 29 -46.014 -17.622 26.849 1.00105.99 C ATOM 121 CG2 ILE 29 -45.127 -16.967 27.919 1.00105.99 C ATOM 122 CG1 ILE 29 -47.132 -18.522 27.400 1.00105.99 C ATOM 123 CD1 ILE 29 -46.627 -19.871 27.903 1.00105.99 C ATOM 124 C ILE 29 -47.265 -15.536 26.899 1.00105.99 C ATOM 125 O ILE 29 -46.634 -14.595 27.382 1.00105.99 O ATOM 126 N TYR 30 -48.574 -15.739 27.136 1.00 62.47 N ATOM 127 CA TYR 30 -49.339 -14.834 27.933 1.00 62.47 C ATOM 128 CB TYR 30 -50.612 -14.296 27.258 1.00 62.47 C ATOM 129 CG TYR 30 -50.267 -13.582 25.996 1.00 62.47 C ATOM 130 CD1 TYR 30 -49.756 -12.304 26.020 1.00 62.47 C ATOM 131 CD2 TYR 30 -50.449 -14.205 24.783 1.00 62.47 C ATOM 132 CE1 TYR 30 -49.443 -11.655 24.847 1.00 62.47 C ATOM 133 CE2 TYR 30 -50.141 -13.563 23.607 1.00 62.47 C ATOM 134 CZ TYR 30 -49.642 -12.284 23.641 1.00 62.47 C ATOM 135 OH TYR 30 -49.324 -11.620 22.438 1.00 62.47 O ATOM 136 C TYR 30 -49.845 -15.600 29.110 1.00 62.47 C ATOM 137 O TYR 30 -50.018 -16.818 29.059 1.00 62.47 O ATOM 138 N ASP 31 -50.103 -14.877 30.211 1.00 48.62 N ATOM 139 CA ASP 31 -50.556 -15.505 31.408 1.00 48.62 C ATOM 140 CB ASP 31 -50.589 -14.543 32.603 1.00 48.62 C ATOM 141 CG ASP 31 -49.143 -14.147 32.862 1.00 48.62 C ATOM 142 OD1 ASP 31 -48.297 -15.067 33.028 1.00 48.62 O ATOM 143 OD2 ASP 31 -48.862 -12.919 32.888 1.00 48.62 O ATOM 144 C ASP 31 -51.938 -16.006 31.153 1.00 48.62 C ATOM 145 O ASP 31 -52.561 -15.664 30.148 1.00 48.62 O ATOM 146 N LYS 32 -52.442 -16.856 32.066 1.00144.20 N ATOM 147 CA LYS 32 -53.724 -17.471 31.891 1.00144.20 C ATOM 148 CB LYS 32 -54.127 -18.349 33.091 1.00144.20 C ATOM 149 CG LYS 32 -55.543 -18.937 33.022 1.00144.20 C ATOM 150 CD LYS 32 -55.750 -19.999 31.942 1.00144.20 C ATOM 151 CE LYS 32 -57.082 -20.747 32.074 1.00144.20 C ATOM 152 NZ LYS 32 -58.215 -19.793 32.082 1.00144.20 N ATOM 153 C LYS 32 -54.760 -16.409 31.769 1.00144.20 C ATOM 154 O LYS 32 -55.565 -16.432 30.840 1.00144.20 O ATOM 155 N THR 33 -54.768 -15.436 32.693 1.00123.98 N ATOM 156 CA THR 33 -55.781 -14.437 32.563 1.00123.98 C ATOM 157 CB THR 33 -56.076 -13.743 33.852 1.00123.98 C ATOM 158 OG1 THR 33 -54.929 -13.052 34.312 1.00123.98 O ATOM 159 CG2 THR 33 -56.479 -14.832 34.862 1.00123.98 C ATOM 160 C THR 33 -55.297 -13.450 31.558 1.00123.98 C ATOM 161 O THR 33 -54.296 -12.767 31.773 1.00123.98 O ATOM 162 N LYS 34 -56.010 -13.369 30.417 1.00158.64 N ATOM 163 CA LYS 34 -55.646 -12.495 29.339 1.00158.64 C ATOM 164 CB LYS 34 -56.621 -12.628 28.148 1.00158.64 C ATOM 165 CG LYS 34 -56.316 -11.799 26.886 1.00158.64 C ATOM 166 CD LYS 34 -56.292 -10.278 27.096 1.00158.64 C ATOM 167 CE LYS 34 -56.489 -9.434 25.837 1.00158.64 C ATOM 168 NZ LYS 34 -57.910 -9.033 25.734 1.00158.64 N ATOM 169 C LYS 34 -55.733 -11.099 29.845 1.00158.64 C ATOM 170 O LYS 34 -54.816 -10.300 29.660 1.00158.64 O ATOM 171 N LYS 35 -56.858 -10.773 30.505 1.00174.35 N ATOM 172 CA LYS 35 -57.024 -9.452 31.018 1.00174.35 C ATOM 173 CB LYS 35 -58.438 -8.854 30.854 1.00174.35 C ATOM 174 CG LYS 35 -58.807 -8.505 29.405 1.00174.35 C ATOM 175 CD LYS 35 -60.280 -8.121 29.220 1.00174.35 C ATOM 176 CE LYS 35 -60.687 -7.850 27.770 1.00174.35 C ATOM 177 NZ LYS 35 -61.020 -9.124 27.091 1.00174.35 N ATOM 178 C LYS 35 -56.705 -9.554 32.463 1.00174.35 C ATOM 179 O LYS 35 -55.766 -10.254 32.840 1.00174.35 O ATOM 180 N TYR 36 -57.447 -8.844 33.325 1.00232.75 N ATOM 181 CA TYR 36 -57.024 -8.922 34.683 1.00232.75 C ATOM 182 CB TYR 36 -56.803 -7.513 35.247 1.00232.75 C ATOM 183 CG TYR 36 -55.955 -7.570 36.464 1.00232.75 C ATOM 184 CD1 TYR 36 -54.589 -7.606 36.327 1.00232.75 C ATOM 185 CD2 TYR 36 -56.508 -7.581 37.724 1.00232.75 C ATOM 186 CE1 TYR 36 -53.776 -7.641 37.430 1.00232.75 C ATOM 187 CE2 TYR 36 -55.700 -7.616 38.834 1.00232.75 C ATOM 188 CZ TYR 36 -54.337 -7.640 38.680 1.00232.75 C ATOM 189 OH TYR 36 -53.504 -7.669 39.808 1.00232.75 O ATOM 190 C TYR 36 -58.100 -9.583 35.497 1.00232.75 C ATOM 191 O TYR 36 -59.011 -8.909 35.976 1.00232.75 O ATOM 192 N TRP 37 -58.046 -10.924 35.672 1.00134.03 N ATOM 193 CA TRP 37 -58.998 -11.509 36.579 1.00134.03 C ATOM 194 CB TRP 37 -60.228 -12.188 35.928 1.00134.03 C ATOM 195 CG TRP 37 -61.109 -11.342 35.025 1.00134.03 C ATOM 196 CD2 TRP 37 -61.195 -11.543 33.605 1.00134.03 C ATOM 197 CD1 TRP 37 -62.006 -10.365 35.333 1.00134.03 C ATOM 198 NE1 TRP 37 -62.626 -9.914 34.186 1.00134.03 N ATOM 199 CE2 TRP 37 -62.140 -10.641 33.117 1.00134.03 C ATOM 200 CE3 TRP 37 -60.552 -12.416 32.771 1.00134.03 C ATOM 201 CZ2 TRP 37 -62.449 -10.592 31.787 1.00134.03 C ATOM 202 CZ3 TRP 37 -60.857 -12.362 31.430 1.00134.03 C ATOM 203 CH2 TRP 37 -61.788 -11.465 30.947 1.00134.03 C ATOM 204 C TRP 37 -58.291 -12.628 37.275 1.00134.03 C ATOM 205 O TRP 37 -58.154 -13.709 36.709 1.00134.03 O ATOM 206 N VAL 38 -57.850 -12.439 38.536 1.00107.42 N ATOM 207 CA VAL 38 -57.138 -13.529 39.134 1.00107.42 C ATOM 208 CB VAL 38 -55.663 -13.353 39.024 1.00107.42 C ATOM 209 CG1 VAL 38 -55.285 -13.417 37.537 1.00107.42 C ATOM 210 CG2 VAL 38 -55.324 -11.999 39.647 1.00107.42 C ATOM 211 C VAL 38 -57.487 -13.623 40.581 1.00107.42 C ATOM 212 O VAL 38 -57.737 -12.624 41.252 1.00107.42 O ATOM 213 N TYR 39 -57.500 -14.866 41.096 1.00 83.36 N ATOM 214 CA TYR 39 -57.847 -15.129 42.461 1.00 83.36 C ATOM 215 CB TYR 39 -57.853 -16.641 42.727 1.00 83.36 C ATOM 216 CG TYR 39 -58.314 -16.888 44.116 1.00 83.36 C ATOM 217 CD1 TYR 39 -57.431 -16.865 45.168 1.00 83.36 C ATOM 218 CD2 TYR 39 -59.642 -17.147 44.357 1.00 83.36 C ATOM 219 CE1 TYR 39 -57.875 -17.099 46.447 1.00 83.36 C ATOM 220 CE2 TYR 39 -60.091 -17.382 45.632 1.00 83.36 C ATOM 221 CZ TYR 39 -59.204 -17.357 46.681 1.00 83.36 C ATOM 222 OH TYR 39 -59.660 -17.597 47.995 1.00 83.36 O ATOM 223 C TYR 39 -56.819 -14.488 43.345 1.00 83.36 C ATOM 224 O TYR 39 -57.154 -13.762 44.281 1.00 83.36 O ATOM 225 N GLN 40 -55.527 -14.718 43.036 1.00117.68 N ATOM 226 CA GLN 40 -54.426 -14.197 43.802 1.00117.68 C ATOM 227 CB GLN 40 -53.047 -14.694 43.326 1.00117.68 C ATOM 228 CG GLN 40 -51.903 -14.283 44.261 1.00117.68 C ATOM 229 CD GLN 40 -52.089 -15.062 45.558 1.00117.68 C ATOM 230 OE1 GLN 40 -52.463 -14.500 46.588 1.00117.68 O ATOM 231 NE2 GLN 40 -51.838 -16.397 45.510 1.00117.68 N ATOM 232 C GLN 40 -54.417 -12.709 43.669 1.00117.68 C ATOM 233 O GLN 40 -54.043 -11.993 44.598 1.00117.68 O ATOM 234 N GLY 41 -54.840 -12.205 42.497 1.00 32.93 N ATOM 235 CA GLY 41 -54.776 -10.795 42.264 1.00 32.93 C ATOM 236 C GLY 41 -53.474 -10.554 41.577 1.00 32.93 C ATOM 237 O GLY 41 -52.960 -9.441 41.571 1.00 32.93 O ATOM 238 N LYS 42 -52.882 -11.611 41.000 1.00 69.08 N ATOM 239 CA LYS 42 -51.623 -11.431 40.349 1.00 69.08 C ATOM 240 CB LYS 42 -50.480 -11.906 41.254 1.00 69.08 C ATOM 241 CG LYS 42 -50.474 -11.105 42.559 1.00 69.08 C ATOM 242 CD LYS 42 -49.766 -11.796 43.722 1.00 69.08 C ATOM 243 CE LYS 42 -49.992 -11.092 45.063 1.00 69.08 C ATOM 244 NZ LYS 42 -49.798 -12.046 46.178 1.00 69.08 N ATOM 245 C LYS 42 -51.655 -12.236 39.089 1.00 69.08 C ATOM 246 O LYS 42 -52.646 -12.899 38.786 1.00 69.08 O ATOM 247 N PRO 43 -50.603 -12.151 38.322 1.00137.65 N ATOM 248 CA PRO 43 -50.516 -12.918 37.110 1.00137.65 C ATOM 249 CD PRO 43 -49.786 -10.951 38.284 1.00137.65 C ATOM 250 CB PRO 43 -49.295 -12.374 36.373 1.00137.65 C ATOM 251 CG PRO 43 -49.180 -10.919 36.871 1.00137.65 C ATOM 252 C PRO 43 -50.394 -14.353 37.507 1.00137.65 C ATOM 253 O PRO 43 -49.768 -14.626 38.529 1.00137.65 O ATOM 254 N VAL 44 -50.982 -15.292 36.740 1.00101.14 N ATOM 255 CA VAL 44 -50.857 -16.671 37.109 1.00101.14 C ATOM 256 CB VAL 44 -52.161 -17.359 37.394 1.00101.14 C ATOM 257 CG1 VAL 44 -52.794 -16.739 38.653 1.00101.14 C ATOM 258 CG2 VAL 44 -53.036 -17.253 36.135 1.00101.14 C ATOM 259 C VAL 44 -50.213 -17.384 35.970 1.00101.14 C ATOM 260 O VAL 44 -50.392 -17.016 34.810 1.00101.14 O ATOM 261 N MET 45 -49.425 -18.430 36.279 1.00 97.44 N ATOM 262 CA MET 45 -48.742 -19.135 35.237 1.00 97.44 C ATOM 263 CB MET 45 -47.535 -19.959 35.716 1.00 97.44 C ATOM 264 CG MET 45 -46.327 -19.122 36.137 1.00 97.44 C ATOM 265 SD MET 45 -45.595 -18.160 34.780 1.00 97.44 S ATOM 266 CE MET 45 -45.600 -19.539 33.598 1.00 97.44 C ATOM 267 C MET 45 -49.690 -20.096 34.619 1.00 97.44 C ATOM 268 O MET 45 -50.493 -20.743 35.291 1.00 97.44 O ATOM 269 N PRO 46 -49.620 -20.159 33.323 1.00134.51 N ATOM 270 CA PRO 46 -50.434 -21.102 32.616 1.00134.51 C ATOM 271 CD PRO 46 -49.361 -18.958 32.543 1.00134.51 C ATOM 272 CB PRO 46 -50.465 -20.627 31.164 1.00134.51 C ATOM 273 CG PRO 46 -50.195 -19.115 31.263 1.00134.51 C ATOM 274 C PRO 46 -49.789 -22.434 32.783 1.00134.51 C ATOM 275 O PRO 46 -48.565 -22.492 32.887 1.00134.51 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 275 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 57.41 73.4 64 94.1 68 ARMSMC SECONDARY STRUCTURE . . 41.67 79.4 34 100.0 34 ARMSMC SURFACE . . . . . . . . 58.31 76.9 52 92.9 56 ARMSMC BURIED . . . . . . . . 53.33 58.3 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 88.32 33.3 30 93.8 32 ARMSSC1 RELIABLE SIDE CHAINS . 84.03 37.0 27 93.1 29 ARMSSC1 SECONDARY STRUCTURE . . 99.29 23.5 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 89.86 28.0 25 92.6 27 ARMSSC1 BURIED . . . . . . . . 80.19 60.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 75.03 52.2 23 92.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 75.20 50.0 20 95.2 21 ARMSSC2 SECONDARY STRUCTURE . . 66.89 53.8 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 70.85 55.0 20 90.9 22 ARMSSC2 BURIED . . . . . . . . 98.46 33.3 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 37.78 75.0 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 20.45 85.7 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 30.96 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 37.78 75.0 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 88.45 33.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 88.45 33.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 89.01 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 88.45 33.3 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.46 (Number of atoms: 33) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.46 33 94.3 35 CRMSCA CRN = ALL/NP . . . . . 0.2563 CRMSCA SECONDARY STRUCTURE . . 6.95 17 100.0 17 CRMSCA SURFACE . . . . . . . . 8.74 27 93.1 29 CRMSCA BURIED . . . . . . . . 7.08 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.47 163 94.2 173 CRMSMC SECONDARY STRUCTURE . . 7.19 85 100.0 85 CRMSMC SURFACE . . . . . . . . 8.72 133 93.0 143 CRMSMC BURIED . . . . . . . . 7.27 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 12.24 143 91.7 156 CRMSSC RELIABLE SIDE CHAINS . 12.21 127 93.4 136 CRMSSC SECONDARY STRUCTURE . . 11.26 84 100.0 84 CRMSSC SURFACE . . . . . . . . 12.44 114 89.8 127 CRMSSC BURIED . . . . . . . . 11.41 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.53 275 92.9 296 CRMSALL SECONDARY STRUCTURE . . 9.59 152 100.0 152 CRMSALL SURFACE . . . . . . . . 10.71 222 91.4 243 CRMSALL BURIED . . . . . . . . 9.71 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 87.547 0.830 0.848 33 94.3 35 ERRCA SECONDARY STRUCTURE . . 85.403 0.859 0.870 17 100.0 17 ERRCA SURFACE . . . . . . . . 90.021 0.829 0.847 27 93.1 29 ERRCA BURIED . . . . . . . . 76.414 0.835 0.850 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 88.356 0.833 0.850 163 94.2 173 ERRMC SECONDARY STRUCTURE . . 85.272 0.857 0.868 85 100.0 85 ERRMC SURFACE . . . . . . . . 91.066 0.833 0.850 133 93.0 143 ERRMC BURIED . . . . . . . . 76.340 0.836 0.851 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 92.359 0.784 0.809 143 91.7 156 ERRSC RELIABLE SIDE CHAINS . 95.043 0.788 0.812 127 93.4 136 ERRSC SECONDARY STRUCTURE . . 89.677 0.790 0.814 84 100.0 84 ERRSC SURFACE . . . . . . . . 94.830 0.784 0.809 114 89.8 127 ERRSC BURIED . . . . . . . . 82.644 0.782 0.806 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 90.141 0.808 0.829 275 92.9 296 ERRALL SECONDARY STRUCTURE . . 87.805 0.822 0.840 152 100.0 152 ERRALL SURFACE . . . . . . . . 92.596 0.808 0.829 222 91.4 243 ERRALL BURIED . . . . . . . . 79.854 0.808 0.827 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 3 11 24 33 35 DISTCA CA (P) 0.00 0.00 8.57 31.43 68.57 35 DISTCA CA (RMS) 0.00 0.00 2.53 3.65 6.16 DISTCA ALL (N) 0 4 17 56 165 275 296 DISTALL ALL (P) 0.00 1.35 5.74 18.92 55.74 296 DISTALL ALL (RMS) 0.00 1.79 2.44 3.61 6.58 DISTALL END of the results output