####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS018_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS018_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 21 - 34 4.59 26.31 LONGEST_CONTINUOUS_SEGMENT: 14 22 - 35 4.68 26.53 LCS_AVERAGE: 34.61 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 25 - 33 1.85 26.20 LCS_AVERAGE: 20.41 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 35 - 40 0.96 34.16 LONGEST_CONTINUOUS_SEGMENT: 6 41 - 46 0.79 47.85 LCS_AVERAGE: 12.82 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 4 7 11 4 4 6 7 7 7 7 7 8 9 9 10 11 11 12 13 15 15 16 16 LCS_GDT F 13 F 13 4 7 11 4 4 6 7 7 7 7 7 8 9 9 10 11 11 12 13 15 15 16 16 LCS_GDT H 14 H 14 4 7 11 4 4 6 7 7 7 7 7 8 9 9 10 11 12 13 14 15 15 16 16 LCS_GDT Y 15 Y 15 4 7 11 4 4 6 7 7 7 7 7 8 9 9 10 11 11 13 14 15 15 16 16 LCS_GDT T 16 T 16 4 7 11 4 4 6 7 7 7 7 7 8 9 9 10 11 12 13 14 15 15 16 16 LCS_GDT V 17 V 17 4 7 11 4 4 6 7 7 7 7 7 8 9 10 10 11 12 13 14 15 15 16 16 LCS_GDT T 18 T 18 3 7 11 3 3 5 7 7 7 7 7 8 9 10 10 11 12 13 14 15 15 16 16 LCS_GDT D 19 D 19 3 3 11 3 3 3 3 4 4 5 5 8 9 10 10 11 12 13 14 15 15 16 16 LCS_GDT I 20 I 20 3 3 11 3 3 3 3 4 4 5 6 7 8 10 10 11 12 13 14 15 15 16 16 LCS_GDT K 21 K 21 3 4 14 3 3 4 4 4 4 5 6 7 9 10 10 11 13 13 14 15 15 16 16 LCS_GDT D 22 D 22 3 4 14 3 3 4 4 4 4 5 6 7 10 11 12 12 13 13 14 15 15 16 16 LCS_GDT L 23 L 23 3 4 14 3 3 4 4 4 4 5 6 7 8 10 12 12 13 13 14 14 14 16 16 LCS_GDT T 24 T 24 3 4 14 3 3 4 4 4 4 6 10 10 11 11 12 12 13 13 14 15 15 16 16 LCS_GDT K 25 K 25 3 9 14 3 3 4 7 9 9 9 10 10 11 11 12 12 13 13 14 15 15 16 16 LCS_GDT L 26 L 26 3 9 14 3 4 4 7 9 9 9 10 10 11 11 12 12 13 13 14 15 15 16 16 LCS_GDT G 27 G 27 5 9 14 5 5 5 7 9 9 9 10 10 11 11 12 12 13 13 14 15 15 16 16 LCS_GDT A 28 A 28 5 9 14 5 5 5 7 9 9 9 10 10 11 11 12 12 13 13 13 14 14 14 15 LCS_GDT I 29 I 29 5 9 14 5 5 5 7 9 9 9 10 10 11 11 12 12 13 13 13 14 14 14 15 LCS_GDT Y 30 Y 30 5 9 14 5 5 5 7 9 9 9 10 10 11 11 12 12 13 13 13 14 14 14 15 LCS_GDT D 31 D 31 5 9 14 3 3 5 5 9 9 9 10 10 11 11 12 12 13 13 13 14 14 14 15 LCS_GDT K 32 K 32 3 9 14 5 5 5 7 9 9 9 10 10 11 11 12 12 13 13 13 14 14 14 14 LCS_GDT T 33 T 33 3 9 14 3 4 4 7 9 9 9 10 10 11 11 12 12 13 13 13 14 14 14 15 LCS_GDT K 34 K 34 3 8 14 3 3 4 6 7 9 9 10 10 11 11 11 12 13 13 13 14 14 14 14 LCS_GDT K 35 K 35 6 8 14 4 5 6 6 6 7 8 9 10 11 11 11 11 12 12 12 12 14 14 14 LCS_GDT Y 36 Y 36 6 8 13 4 5 6 6 7 7 8 8 9 9 9 9 10 10 10 12 12 12 14 14 LCS_GDT W 37 W 37 6 8 11 4 5 6 6 7 7 8 8 9 9 9 9 10 10 10 10 11 12 14 14 LCS_GDT V 38 V 38 6 8 11 4 5 6 6 7 7 8 8 9 9 9 9 10 10 10 10 11 12 14 14 LCS_GDT Y 39 Y 39 6 8 11 3 5 6 6 7 7 8 8 9 9 9 9 10 10 10 10 11 12 14 14 LCS_GDT Q 40 Q 40 6 8 11 3 4 6 7 7 7 8 8 9 9 9 9 10 10 10 10 11 12 14 14 LCS_GDT G 41 G 41 6 7 11 4 5 6 7 7 7 7 8 9 9 9 9 10 10 10 10 11 12 14 14 LCS_GDT K 42 K 42 6 7 11 4 5 6 7 7 7 7 7 7 8 8 9 10 10 10 10 11 12 14 14 LCS_GDT P 43 P 43 6 7 9 4 5 6 7 7 7 7 7 7 8 8 8 8 8 9 9 9 12 14 14 LCS_GDT V 44 V 44 6 7 9 4 5 6 7 7 7 7 7 7 8 8 8 8 8 9 9 11 12 14 14 LCS_GDT M 45 M 45 6 7 9 3 5 6 7 7 7 7 7 7 8 8 8 8 8 9 9 9 12 14 14 LCS_GDT P 46 P 46 6 7 9 3 5 6 7 7 7 7 7 7 8 8 8 8 8 9 9 9 9 14 14 LCS_AVERAGE LCS_A: 22.61 ( 12.82 20.41 34.61 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 5 6 7 9 9 9 10 10 11 11 12 12 13 13 14 15 15 16 16 GDT PERCENT_AT 14.29 14.29 17.14 20.00 25.71 25.71 25.71 28.57 28.57 31.43 31.43 34.29 34.29 37.14 37.14 40.00 42.86 42.86 45.71 45.71 GDT RMS_LOCAL 0.26 0.26 0.79 1.12 1.85 1.85 1.85 2.26 2.26 2.73 2.73 3.55 3.55 3.90 3.90 5.73 6.15 6.15 6.41 6.41 GDT RMS_ALL_AT 29.36 29.36 47.85 47.35 26.20 26.20 26.20 26.13 26.13 26.10 26.10 26.77 26.77 26.60 26.60 32.38 34.85 34.85 34.40 34.40 # Checking swapping # possible swapping detected: Y 15 Y 15 # possible swapping detected: D 19 D 19 # possible swapping detected: D 22 D 22 # possible swapping detected: Y 30 Y 30 # possible swapping detected: D 31 D 31 # possible swapping detected: Y 39 Y 39 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 56.715 0 0.178 1.332 58.898 0.000 0.000 LGA F 13 F 13 49.942 0 0.083 1.421 52.394 0.000 0.000 LGA H 14 H 14 45.756 0 0.137 1.136 47.129 0.000 0.000 LGA Y 15 Y 15 40.015 0 0.074 1.316 42.163 0.000 0.000 LGA T 16 T 16 35.147 0 0.110 1.141 36.803 0.000 0.000 LGA V 17 V 17 29.033 0 0.600 1.508 31.304 0.000 0.000 LGA T 18 T 18 23.770 0 0.605 0.550 25.894 0.000 0.000 LGA D 19 D 19 22.275 0 0.598 1.235 26.691 0.000 0.000 LGA I 20 I 20 19.293 0 0.632 0.758 24.378 0.000 0.000 LGA K 21 K 21 12.088 0 0.585 1.012 14.801 0.119 0.159 LGA D 22 D 22 10.511 0 0.586 1.204 14.267 0.833 0.417 LGA L 23 L 23 9.848 0 0.599 0.914 14.529 1.190 0.595 LGA T 24 T 24 5.844 0 0.651 0.626 9.758 32.024 21.701 LGA K 25 K 25 1.951 0 0.629 1.160 11.094 68.810 36.138 LGA L 26 L 26 0.917 0 0.647 1.355 5.397 78.095 60.000 LGA G 27 G 27 2.247 0 0.672 0.672 2.308 75.357 75.357 LGA A 28 A 28 2.124 0 0.046 0.056 4.544 73.214 64.857 LGA I 29 I 29 1.588 0 0.106 1.207 6.969 69.286 47.024 LGA Y 30 Y 30 1.975 0 0.070 1.188 8.914 67.619 32.302 LGA D 31 D 31 3.058 0 0.471 1.106 8.624 71.429 40.238 LGA K 32 K 32 1.424 0 0.569 1.902 5.688 69.405 55.026 LGA T 33 T 33 1.740 0 0.684 1.360 5.840 84.048 65.374 LGA K 34 K 34 4.027 0 0.598 0.950 11.360 33.452 17.619 LGA K 35 K 35 8.224 0 0.663 1.186 11.739 5.714 3.651 LGA Y 36 Y 36 12.762 0 0.092 1.117 14.967 0.000 0.000 LGA W 37 W 37 17.654 0 0.050 1.222 25.166 0.000 0.000 LGA V 38 V 38 21.011 0 0.071 0.208 23.170 0.000 0.000 LGA Y 39 Y 39 26.315 0 0.076 1.393 36.634 0.000 0.000 LGA Q 40 Q 40 28.054 0 0.570 1.150 32.079 0.000 0.000 LGA G 41 G 41 25.868 0 0.437 0.437 26.882 0.000 0.000 LGA K 42 K 42 29.257 0 0.051 0.795 31.670 0.000 0.000 LGA P 43 P 43 32.539 0 0.066 0.165 34.617 0.000 0.000 LGA V 44 V 44 38.142 0 0.062 1.157 39.907 0.000 0.000 LGA M 45 M 45 42.998 0 0.094 0.167 46.621 0.000 0.000 LGA P 46 P 46 46.769 0 0.082 0.095 49.507 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 22.948 22.992 23.692 20.874 14.870 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 10 2.26 25.714 25.039 0.423 LGA_LOCAL RMSD: 2.264 Number of atoms: 10 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 26.128 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 22.948 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.336180 * X + -0.939779 * Y + 0.061635 * Z + -123.713234 Y_new = 0.847024 * X + 0.330314 * Y + 0.416465 * Z + -98.225899 Z_new = -0.411744 * X + -0.087801 * Y + 0.907060 * Z + 51.200356 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.192969 0.424367 -0.096496 [DEG: 68.3521 24.3144 -5.5288 ] ZXZ: 2.994663 0.434548 -1.780891 [DEG: 171.5815 24.8978 -102.0375 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS018_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS018_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 10 2.26 25.039 22.95 REMARK ---------------------------------------------------------- MOLECULE T0548TS018_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT 3hphA ATOM 87 N HIS 12 -36.474 22.078 8.106 1.00216.66 N ATOM 88 CA HIS 12 -37.465 21.068 8.316 1.00216.66 C ATOM 89 ND1 HIS 12 -39.213 18.247 7.235 1.00216.66 N ATOM 90 CG HIS 12 -39.222 19.622 7.174 1.00216.66 C ATOM 91 CB HIS 12 -38.001 20.474 7.001 1.00216.66 C ATOM 92 NE2 HIS 12 -41.337 18.876 7.412 1.00216.66 N ATOM 93 CD2 HIS 12 -40.528 19.990 7.287 1.00216.66 C ATOM 94 CE1 HIS 12 -40.504 17.854 7.377 1.00216.66 C ATOM 95 C HIS 12 -36.806 19.975 9.085 1.00216.66 C ATOM 96 O HIS 12 -36.046 19.182 8.531 1.00216.66 O ATOM 97 N PHE 13 -37.063 19.908 10.404 1.00234.07 N ATOM 98 CA PHE 13 -36.449 18.862 11.162 1.00234.07 C ATOM 99 CB PHE 13 -35.397 19.391 12.158 1.00234.07 C ATOM 100 CG PHE 13 -34.640 18.248 12.744 1.00234.07 C ATOM 101 CD1 PHE 13 -33.570 17.713 12.065 1.00234.07 C ATOM 102 CD2 PHE 13 -34.986 17.715 13.967 1.00234.07 C ATOM 103 CE1 PHE 13 -32.859 16.664 12.594 1.00234.07 C ATOM 104 CE2 PHE 13 -34.278 16.664 14.504 1.00234.07 C ATOM 105 CZ PHE 13 -33.211 16.139 13.813 1.00234.07 C ATOM 106 C PHE 13 -37.532 18.213 11.953 1.00234.07 C ATOM 107 O PHE 13 -38.203 18.865 12.752 1.00234.07 O ATOM 108 N HIS 14 -37.748 16.902 11.734 1.00273.25 N ATOM 109 CA HIS 14 -38.723 16.242 12.546 1.00273.25 C ATOM 110 ND1 HIS 14 -41.580 14.950 12.976 1.00273.25 N ATOM 111 CG HIS 14 -40.369 14.327 12.761 1.00273.25 C ATOM 112 CB HIS 14 -39.248 14.918 11.958 1.00273.25 C ATOM 113 NE2 HIS 14 -41.680 12.989 14.021 1.00273.25 N ATOM 114 CD2 HIS 14 -40.449 13.130 13.406 1.00273.25 C ATOM 115 CE1 HIS 14 -42.325 14.107 13.737 1.00273.25 C ATOM 116 C HIS 14 -38.020 15.970 13.831 1.00273.25 C ATOM 117 O HIS 14 -36.832 15.649 13.834 1.00273.25 O ATOM 118 N TYR 15 -38.722 16.100 14.970 1.00285.39 N ATOM 119 CA TYR 15 -38.023 15.917 16.206 1.00285.39 C ATOM 120 CB TYR 15 -38.794 16.407 17.442 1.00285.39 C ATOM 121 CG TYR 15 -37.860 16.420 18.604 1.00285.39 C ATOM 122 CD1 TYR 15 -36.931 17.428 18.730 1.00285.39 C ATOM 123 CD2 TYR 15 -37.921 15.450 19.578 1.00285.39 C ATOM 124 CE1 TYR 15 -36.066 17.461 19.801 1.00285.39 C ATOM 125 CE2 TYR 15 -37.059 15.475 20.652 1.00285.39 C ATOM 126 CZ TYR 15 -36.131 16.482 20.765 1.00285.39 C ATOM 127 OH TYR 15 -35.247 16.513 21.866 1.00285.39 O ATOM 128 C TYR 15 -37.773 14.457 16.360 1.00285.39 C ATOM 129 O TYR 15 -38.660 13.632 16.142 1.00285.39 O ATOM 130 N THR 16 -36.528 14.101 16.725 1.00202.28 N ATOM 131 CA THR 16 -36.188 12.719 16.869 1.00202.28 C ATOM 132 CB THR 16 -34.886 12.353 16.212 1.00202.28 C ATOM 133 OG1 THR 16 -34.949 12.626 14.820 1.00202.28 O ATOM 134 CG2 THR 16 -34.597 10.862 16.453 1.00202.28 C ATOM 135 C THR 16 -36.048 12.439 18.325 1.00202.28 C ATOM 136 O THR 16 -35.526 13.255 19.084 1.00202.28 O ATOM 137 N VAL 17 -36.550 11.263 18.748 1.00123.19 N ATOM 138 CA VAL 17 -36.459 10.886 20.123 1.00123.19 C ATOM 139 CB VAL 17 -37.796 10.675 20.770 1.00123.19 C ATOM 140 CG1 VAL 17 -38.578 12.003 20.726 1.00123.19 C ATOM 141 CG2 VAL 17 -38.505 9.501 20.072 1.00123.19 C ATOM 142 C VAL 17 -35.734 9.582 20.162 1.00123.19 C ATOM 143 O VAL 17 -35.796 8.795 19.219 1.00123.19 O ATOM 144 N THR 18 -35.006 9.329 21.264 1.00170.48 N ATOM 145 CA THR 18 -34.284 8.096 21.363 1.00170.48 C ATOM 146 CB THR 18 -33.326 8.056 22.515 1.00170.48 C ATOM 147 OG1 THR 18 -32.361 9.089 22.386 1.00170.48 O ATOM 148 CG2 THR 18 -32.638 6.683 22.536 1.00170.48 C ATOM 149 C THR 18 -35.292 7.024 21.581 1.00170.48 C ATOM 150 O THR 18 -36.307 7.241 22.240 1.00170.48 O ATOM 151 N ASP 19 -35.049 5.831 21.011 1.00170.25 N ATOM 152 CA ASP 19 -35.994 4.775 21.198 1.00170.25 C ATOM 153 CB ASP 19 -35.699 3.526 20.348 1.00170.25 C ATOM 154 CG ASP 19 -35.981 3.883 18.893 1.00170.25 C ATOM 155 OD1 ASP 19 -36.917 4.694 18.659 1.00170.25 O ATOM 156 OD2 ASP 19 -35.269 3.351 18.000 1.00170.25 O ATOM 157 C ASP 19 -35.923 4.406 22.641 1.00170.25 C ATOM 158 O ASP 19 -34.861 4.480 23.259 1.00170.25 O ATOM 159 N ILE 20 -37.075 4.031 23.226 1.00112.39 N ATOM 160 CA ILE 20 -37.085 3.684 24.613 1.00112.39 C ATOM 161 CB ILE 20 -38.046 4.513 25.415 1.00112.39 C ATOM 162 CG2 ILE 20 -38.023 4.002 26.866 1.00112.39 C ATOM 163 CG1 ILE 20 -37.710 6.010 25.277 1.00112.39 C ATOM 164 CD1 ILE 20 -36.318 6.386 25.785 1.00112.39 C ATOM 165 C ILE 20 -37.566 2.277 24.685 1.00112.39 C ATOM 166 O ILE 20 -38.608 1.944 24.125 1.00112.39 O ATOM 167 N LYS 21 -36.811 1.393 25.360 1.00207.57 N ATOM 168 CA LYS 21 -37.292 0.049 25.431 1.00207.57 C ATOM 169 CB LYS 21 -36.296 -0.982 24.869 1.00207.57 C ATOM 170 CG LYS 21 -34.919 -0.952 25.536 1.00207.57 C ATOM 171 CD LYS 21 -34.024 -2.125 25.124 1.00207.57 C ATOM 172 CE LYS 21 -33.416 -1.962 23.728 1.00207.57 C ATOM 173 NZ LYS 21 -32.570 -3.130 23.391 1.00207.57 N ATOM 174 C LYS 21 -37.563 -0.269 26.862 1.00207.57 C ATOM 175 O LYS 21 -36.652 -0.556 27.638 1.00207.57 O ATOM 176 N ASP 22 -38.850 -0.200 27.244 1.00159.51 N ATOM 177 CA ASP 22 -39.243 -0.531 28.578 1.00159.51 C ATOM 178 CB ASP 22 -40.371 0.344 29.135 1.00159.51 C ATOM 179 CG ASP 22 -39.751 1.684 29.499 1.00159.51 C ATOM 180 OD1 ASP 22 -38.499 1.797 29.415 1.00159.51 O ATOM 181 OD2 ASP 22 -40.517 2.610 29.875 1.00159.51 O ATOM 182 C ASP 22 -39.713 -1.942 28.561 1.00159.51 C ATOM 183 O ASP 22 -39.376 -2.706 27.659 1.00159.51 O ATOM 184 N LEU 23 -40.492 -2.335 29.586 1.00240.16 N ATOM 185 CA LEU 23 -40.951 -3.687 29.617 1.00240.16 C ATOM 186 CB LEU 23 -41.744 -4.061 30.883 1.00240.16 C ATOM 187 CG LEU 23 -40.920 -4.014 32.176 1.00240.16 C ATOM 188 CD1 LEU 23 -40.422 -2.590 32.461 1.00240.16 C ATOM 189 CD2 LEU 23 -41.702 -4.618 33.356 1.00240.16 C ATOM 190 C LEU 23 -41.885 -3.876 28.479 1.00240.16 C ATOM 191 O LEU 23 -42.866 -3.151 28.325 1.00240.16 O ATOM 192 N THR 24 -41.573 -4.870 27.635 1.00257.60 N ATOM 193 CA THR 24 -42.456 -5.236 26.579 1.00257.60 C ATOM 194 CB THR 24 -41.951 -4.909 25.203 1.00257.60 C ATOM 195 OG1 THR 24 -40.748 -5.613 24.938 1.00257.60 O ATOM 196 CG2 THR 24 -41.714 -3.391 25.114 1.00257.60 C ATOM 197 C THR 24 -42.553 -6.711 26.686 1.00257.60 C ATOM 198 O THR 24 -41.544 -7.396 26.852 1.00257.60 O ATOM 199 N LYS 25 -43.777 -7.253 26.623 1.00235.79 N ATOM 200 CA LYS 25 -43.858 -8.670 26.743 1.00235.79 C ATOM 201 CB LYS 25 -45.281 -9.143 27.075 1.00235.79 C ATOM 202 CG LYS 25 -45.353 -10.544 27.680 1.00235.79 C ATOM 203 CD LYS 25 -46.694 -10.833 28.362 1.00235.79 C ATOM 204 CE LYS 25 -46.848 -10.166 29.734 1.00235.79 C ATOM 205 NZ LYS 25 -47.024 -8.703 29.581 1.00235.79 N ATOM 206 C LYS 25 -43.459 -9.192 25.405 1.00235.79 C ATOM 207 O LYS 25 -44.138 -8.952 24.408 1.00235.79 O ATOM 208 N LEU 26 -42.321 -9.906 25.340 1.00227.12 N ATOM 209 CA LEU 26 -41.884 -10.383 24.062 1.00227.12 C ATOM 210 CB LEU 26 -40.415 -10.852 24.022 1.00227.12 C ATOM 211 CG LEU 26 -39.374 -9.730 24.209 1.00227.12 C ATOM 212 CD1 LEU 26 -39.473 -9.088 25.602 1.00227.12 C ATOM 213 CD2 LEU 26 -37.953 -10.223 23.888 1.00227.12 C ATOM 214 C LEU 26 -42.726 -11.556 23.700 1.00227.12 C ATOM 215 O LEU 26 -42.867 -12.501 24.473 1.00227.12 O ATOM 216 N GLY 27 -43.342 -11.501 22.506 1.00102.72 N ATOM 217 CA GLY 27 -44.112 -12.610 22.031 1.00102.72 C ATOM 218 C GLY 27 -45.353 -12.718 22.852 1.00102.72 C ATOM 219 O GLY 27 -45.577 -11.935 23.773 1.00102.72 O ATOM 220 N ALA 28 -46.194 -13.716 22.517 1.00186.95 N ATOM 221 CA ALA 28 -47.407 -13.960 23.238 1.00186.95 C ATOM 222 CB ALA 28 -48.424 -14.821 22.469 1.00186.95 C ATOM 223 C ALA 28 -47.035 -14.714 24.466 1.00186.95 C ATOM 224 O ALA 28 -45.995 -15.370 24.506 1.00186.95 O ATOM 225 N ILE 29 -47.869 -14.619 25.517 1.00178.19 N ATOM 226 CA ILE 29 -47.552 -15.342 26.710 1.00178.19 C ATOM 227 CB ILE 29 -47.306 -14.445 27.900 1.00178.19 C ATOM 228 CG2 ILE 29 -48.602 -13.677 28.214 1.00178.19 C ATOM 229 CG1 ILE 29 -46.725 -15.223 29.100 1.00178.19 C ATOM 230 CD1 ILE 29 -47.684 -16.203 29.780 1.00178.19 C ATOM 231 C ILE 29 -48.674 -16.278 27.021 1.00178.19 C ATOM 232 O ILE 29 -49.830 -15.878 27.137 1.00178.19 O ATOM 233 N TYR 30 -48.345 -17.580 27.134 1.00247.60 N ATOM 234 CA TYR 30 -49.310 -18.550 27.556 1.00247.60 C ATOM 235 CB TYR 30 -49.674 -19.588 26.478 1.00247.60 C ATOM 236 CG TYR 30 -50.793 -20.422 27.008 1.00247.60 C ATOM 237 CD1 TYR 30 -52.099 -20.044 26.794 1.00247.60 C ATOM 238 CD2 TYR 30 -50.545 -21.571 27.723 1.00247.60 C ATOM 239 CE1 TYR 30 -53.143 -20.798 27.276 1.00247.60 C ATOM 240 CE2 TYR 30 -51.584 -22.330 28.208 1.00247.60 C ATOM 241 CZ TYR 30 -52.885 -21.945 27.987 1.00247.60 C ATOM 242 OH TYR 30 -53.950 -22.725 28.486 1.00247.60 O ATOM 243 C TYR 30 -48.630 -19.280 28.666 1.00247.60 C ATOM 244 O TYR 30 -47.526 -19.793 28.490 1.00247.60 O ATOM 245 N ASP 31 -49.258 -19.334 29.853 1.00188.63 N ATOM 246 CA ASP 31 -48.590 -19.986 30.938 1.00188.63 C ATOM 247 CB ASP 31 -48.346 -19.070 32.148 1.00188.63 C ATOM 248 CG ASP 31 -47.317 -19.742 33.047 1.00188.63 C ATOM 249 OD1 ASP 31 -46.292 -20.240 32.506 1.00188.63 O ATOM 250 OD2 ASP 31 -47.531 -19.754 34.288 1.00188.63 O ATOM 251 C ASP 31 -49.447 -21.115 31.405 1.00188.63 C ATOM 252 O ASP 31 -49.522 -22.165 30.770 1.00188.63 O ATOM 253 N LYS 32 -50.131 -20.895 32.543 1.00292.23 N ATOM 254 CA LYS 32 -50.936 -21.892 33.181 1.00292.23 C ATOM 255 CB LYS 32 -51.748 -21.297 34.353 1.00292.23 C ATOM 256 CG LYS 32 -52.853 -22.175 34.947 1.00292.23 C ATOM 257 CD LYS 32 -54.101 -22.281 34.065 1.00292.23 C ATOM 258 CE LYS 32 -54.813 -20.938 33.874 1.00292.23 C ATOM 259 NZ LYS 32 -55.933 -21.084 32.915 1.00292.23 N ATOM 260 C LYS 32 -51.854 -22.524 32.187 1.00292.23 C ATOM 261 O LYS 32 -52.618 -21.858 31.491 1.00292.23 O ATOM 262 N THR 33 -51.763 -23.865 32.099 1.00296.42 N ATOM 263 CA THR 33 -52.600 -24.658 31.254 1.00296.42 C ATOM 264 CB THR 33 -52.023 -24.905 29.893 1.00296.42 C ATOM 265 OG1 THR 33 -52.981 -25.546 29.063 1.00296.42 O ATOM 266 CG2 THR 33 -50.771 -25.784 30.043 1.00296.42 C ATOM 267 C THR 33 -52.696 -25.985 31.926 1.00296.42 C ATOM 268 O THR 33 -51.932 -26.270 32.848 1.00296.42 O ATOM 269 N LYS 34 -53.655 -26.829 31.504 1.00244.72 N ATOM 270 CA LYS 34 -53.733 -28.126 32.104 1.00244.72 C ATOM 271 CB LYS 34 -55.040 -28.360 32.879 1.00244.72 C ATOM 272 CG LYS 34 -55.122 -29.740 33.532 1.00244.72 C ATOM 273 CD LYS 34 -56.186 -29.831 34.623 1.00244.72 C ATOM 274 CE LYS 34 -55.716 -29.284 35.973 1.00244.72 C ATOM 275 NZ LYS 34 -55.421 -27.836 35.862 1.00244.72 N ATOM 276 C LYS 34 -53.660 -29.131 31.003 1.00244.72 C ATOM 277 O LYS 34 -54.585 -29.262 30.200 1.00244.72 O ATOM 278 N LYS 35 -52.534 -29.864 30.929 1.00311.07 N ATOM 279 CA LYS 35 -52.391 -30.866 29.917 1.00311.07 C ATOM 280 CB LYS 35 -51.448 -30.449 28.773 1.00311.07 C ATOM 281 CG LYS 35 -51.287 -31.506 27.679 1.00311.07 C ATOM 282 CD LYS 35 -52.559 -31.725 26.858 1.00311.07 C ATOM 283 CE LYS 35 -52.411 -32.777 25.757 1.00311.07 C ATOM 284 NZ LYS 35 -52.102 -34.095 26.357 1.00311.07 N ATOM 285 C LYS 35 -51.796 -32.068 30.574 1.00311.07 C ATOM 286 O LYS 35 -50.807 -31.966 31.298 1.00311.07 O ATOM 287 N TYR 36 -52.401 -33.248 30.345 1.00319.21 N ATOM 288 CA TYR 36 -51.868 -34.433 30.941 1.00319.21 C ATOM 289 CB TYR 36 -52.776 -35.018 32.035 1.00319.21 C ATOM 290 CG TYR 36 -52.093 -36.213 32.604 1.00319.21 C ATOM 291 CD1 TYR 36 -50.934 -36.056 33.328 1.00319.21 C ATOM 292 CD2 TYR 36 -52.618 -37.474 32.446 1.00319.21 C ATOM 293 CE1 TYR 36 -50.286 -37.142 33.864 1.00319.21 C ATOM 294 CE2 TYR 36 -51.975 -38.564 32.983 1.00319.21 C ATOM 295 CZ TYR 36 -50.810 -38.399 33.692 1.00319.21 C ATOM 296 OH TYR 36 -50.149 -39.519 34.242 1.00319.21 O ATOM 297 C TYR 36 -51.711 -35.440 29.848 1.00319.21 C ATOM 298 O TYR 36 -52.540 -35.522 28.942 1.00319.21 O ATOM 299 N TRP 37 -50.618 -36.223 29.901 1.00292.45 N ATOM 300 CA TRP 37 -50.358 -37.188 28.874 1.00292.45 C ATOM 301 CB TRP 37 -48.888 -37.640 28.838 1.00292.45 C ATOM 302 CG TRP 37 -48.535 -38.620 27.743 1.00292.45 C ATOM 303 CD2 TRP 37 -48.027 -38.225 26.461 1.00292.45 C ATOM 304 CD1 TRP 37 -48.577 -39.984 27.737 1.00292.45 C ATOM 305 NE1 TRP 37 -48.124 -40.462 26.528 1.00292.45 N ATOM 306 CE2 TRP 37 -47.783 -39.388 25.734 1.00292.45 C ATOM 307 CE3 TRP 37 -47.777 -36.991 25.935 1.00292.45 C ATOM 308 CZ2 TRP 37 -47.287 -39.332 24.462 1.00292.45 C ATOM 309 CZ3 TRP 37 -47.281 -36.938 24.652 1.00292.45 C ATOM 310 CH2 TRP 37 -47.039 -38.086 23.928 1.00292.45 C ATOM 311 C TRP 37 -51.187 -38.394 29.161 1.00292.45 C ATOM 312 O TRP 37 -51.352 -38.783 30.316 1.00292.45 O ATOM 313 N VAL 38 -51.757 -39.003 28.101 1.00 71.09 N ATOM 314 CA VAL 38 -52.538 -40.187 28.308 1.00 71.09 C ATOM 315 CB VAL 38 -53.998 -39.910 28.519 1.00 71.09 C ATOM 316 CG1 VAL 38 -54.739 -41.248 28.682 1.00 71.09 C ATOM 317 CG2 VAL 38 -54.140 -38.964 29.724 1.00 71.09 C ATOM 318 C VAL 38 -52.426 -41.040 27.086 1.00 71.09 C ATOM 319 O VAL 38 -52.203 -40.543 25.982 1.00 71.09 O ATOM 320 N TYR 39 -52.560 -42.367 27.270 1.00259.53 N ATOM 321 CA TYR 39 -52.538 -43.286 26.172 1.00259.53 C ATOM 322 CB TYR 39 -51.521 -44.426 26.375 1.00259.53 C ATOM 323 CG TYR 39 -51.708 -45.461 25.313 1.00259.53 C ATOM 324 CD1 TYR 39 -51.288 -45.239 24.022 1.00259.53 C ATOM 325 CD2 TYR 39 -52.291 -46.670 25.621 1.00259.53 C ATOM 326 CE1 TYR 39 -51.459 -46.203 23.055 1.00259.53 C ATOM 327 CE2 TYR 39 -52.464 -47.640 24.660 1.00259.53 C ATOM 328 CZ TYR 39 -52.049 -47.403 23.372 1.00259.53 C ATOM 329 OH TYR 39 -52.221 -48.389 22.376 1.00259.53 O ATOM 330 C TYR 39 -53.904 -43.880 26.131 1.00259.53 C ATOM 331 O TYR 39 -54.307 -44.585 27.055 1.00259.53 O ATOM 332 N GLN 40 -54.664 -43.602 25.055 1.00230.58 N ATOM 333 CA GLN 40 -55.997 -44.118 25.023 1.00230.58 C ATOM 334 CB GLN 40 -57.067 -43.130 25.519 1.00230.58 C ATOM 335 CG GLN 40 -56.908 -42.786 27.001 1.00230.58 C ATOM 336 CD GLN 40 -58.015 -41.825 27.408 1.00230.58 C ATOM 337 OE1 GLN 40 -58.178 -41.521 28.588 1.00230.58 O ATOM 338 NE2 GLN 40 -58.799 -41.336 26.409 1.00230.58 N ATOM 339 C GLN 40 -56.355 -44.495 23.627 1.00230.58 C ATOM 340 O GLN 40 -55.595 -44.289 22.680 1.00230.58 O ATOM 341 N GLY 41 -57.551 -45.095 23.495 1.00 96.88 N ATOM 342 CA GLY 41 -58.078 -45.542 22.244 1.00 96.88 C ATOM 343 C GLY 41 -57.906 -47.020 22.233 1.00 96.88 C ATOM 344 O GLY 41 -56.862 -47.537 21.836 1.00 96.88 O ATOM 345 N LYS 42 -58.952 -47.742 22.675 1.00295.24 N ATOM 346 CA LYS 42 -58.889 -49.169 22.704 1.00295.24 C ATOM 347 CB LYS 42 -58.416 -49.723 24.059 1.00295.24 C ATOM 348 CG LYS 42 -58.092 -51.216 24.026 1.00295.24 C ATOM 349 CD LYS 42 -56.856 -51.532 23.182 1.00295.24 C ATOM 350 CE LYS 42 -56.500 -53.020 23.130 1.00295.24 C ATOM 351 NZ LYS 42 -55.292 -53.223 22.300 1.00295.24 N ATOM 352 C LYS 42 -60.286 -49.647 22.502 1.00295.24 C ATOM 353 O LYS 42 -61.234 -49.014 22.963 1.00295.24 O ATOM 354 N PRO 43 -60.449 -50.737 21.811 1.00161.41 N ATOM 355 CA PRO 43 -61.780 -51.242 21.643 1.00161.41 C ATOM 356 CD PRO 43 -59.609 -51.021 20.658 1.00161.41 C ATOM 357 CB PRO 43 -61.704 -52.248 20.501 1.00161.41 C ATOM 358 CG PRO 43 -60.527 -51.733 19.650 1.00161.41 C ATOM 359 C PRO 43 -62.203 -51.816 22.950 1.00161.41 C ATOM 360 O PRO 43 -61.336 -52.241 23.712 1.00161.41 O ATOM 361 N VAL 44 -63.513 -51.835 23.258 1.00108.43 N ATOM 362 CA VAL 44 -63.854 -52.353 24.545 1.00108.43 C ATOM 363 CB VAL 44 -64.377 -51.319 25.499 1.00108.43 C ATOM 364 CG1 VAL 44 -63.260 -50.298 25.765 1.00108.43 C ATOM 365 CG2 VAL 44 -65.669 -50.720 24.919 1.00108.43 C ATOM 366 C VAL 44 -64.911 -53.390 24.401 1.00108.43 C ATOM 367 O VAL 44 -65.827 -53.271 23.589 1.00108.43 O ATOM 368 N MET 45 -64.764 -54.460 25.200 1.00240.59 N ATOM 369 CA MET 45 -65.721 -55.515 25.288 1.00240.59 C ATOM 370 CB MET 45 -65.180 -56.864 24.779 1.00240.59 C ATOM 371 CG MET 45 -66.229 -57.970 24.655 1.00240.59 C ATOM 372 SD MET 45 -65.561 -59.552 24.056 1.00240.59 S ATOM 373 CE MET 45 -65.011 -58.911 22.447 1.00240.59 C ATOM 374 C MET 45 -65.945 -55.652 26.757 1.00240.59 C ATOM 375 O MET 45 -64.985 -55.718 27.523 1.00240.59 O ATOM 376 N PRO 46 -67.169 -55.680 27.191 1.00154.71 N ATOM 377 CA PRO 46 -67.373 -55.783 28.606 1.00154.71 C ATOM 378 CD PRO 46 -68.204 -54.885 26.553 1.00154.71 C ATOM 379 CB PRO 46 -68.834 -55.406 28.844 1.00154.71 C ATOM 380 CG PRO 46 -69.142 -54.434 27.687 1.00154.71 C ATOM 381 C PRO 46 -66.979 -57.135 29.092 1.00154.71 C ATOM 382 O PRO 46 -67.162 -58.113 28.368 1.00154.71 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 86.48 50.0 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 92.83 52.9 34 100.0 34 ARMSMC SURFACE . . . . . . . . 92.05 42.9 56 100.0 56 ARMSMC BURIED . . . . . . . . 53.25 83.3 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 84.82 46.9 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 82.27 48.3 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 72.76 58.8 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 84.22 48.1 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 87.94 40.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 86.49 52.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 82.05 57.1 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 75.31 53.8 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 80.93 59.1 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 119.61 0.0 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 100.65 37.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 85.78 42.9 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 119.32 0.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 100.65 37.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 94.11 33.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 94.11 33.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 117.18 0.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 94.11 33.3 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 22.95 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 22.95 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.6557 CRMSCA SECONDARY STRUCTURE . . 15.57 17 100.0 17 CRMSCA SURFACE . . . . . . . . 23.04 29 100.0 29 CRMSCA BURIED . . . . . . . . 22.48 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 23.09 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 15.68 85 100.0 85 CRMSMC SURFACE . . . . . . . . 23.20 143 100.0 143 CRMSMC BURIED . . . . . . . . 22.52 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 24.34 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 24.09 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 17.91 84 100.0 84 CRMSSC SURFACE . . . . . . . . 23.92 127 100.0 127 CRMSSC BURIED . . . . . . . . 26.06 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 23.71 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 16.94 152 100.0 152 CRMSALL SURFACE . . . . . . . . 23.54 243 100.0 243 CRMSALL BURIED . . . . . . . . 24.50 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 190.645 0.805 0.827 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 188.785 0.845 0.859 17 100.0 17 ERRCA SURFACE . . . . . . . . 193.496 0.813 0.833 29 100.0 29 ERRCA BURIED . . . . . . . . 176.863 0.767 0.800 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 191.819 0.806 0.827 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 188.651 0.844 0.858 85 100.0 85 ERRMC SURFACE . . . . . . . . 194.944 0.814 0.833 143 100.0 143 ERRMC BURIED . . . . . . . . 176.923 0.767 0.800 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 210.828 0.815 0.834 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 216.338 0.824 0.841 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 205.940 0.847 0.860 84 100.0 84 ERRSC SURFACE . . . . . . . . 210.331 0.823 0.840 127 100.0 127 ERRSC BURIED . . . . . . . . 213.003 0.783 0.810 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 201.259 0.810 0.831 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 198.219 0.845 0.859 152 100.0 152 ERRALL SURFACE . . . . . . . . 202.260 0.818 0.836 243 100.0 243 ERRALL BURIED . . . . . . . . 196.669 0.775 0.805 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 0 5 35 35 DISTCA CA (P) 0.00 0.00 0.00 0.00 14.29 35 DISTCA CA (RMS) 0.00 0.00 0.00 0.00 8.05 DISTCA ALL (N) 0 0 0 1 28 296 296 DISTALL ALL (P) 0.00 0.00 0.00 0.34 9.46 296 DISTALL ALL (RMS) 0.00 0.00 0.00 4.97 7.65 DISTALL END of the results output