####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 57 ( 228), selected 57 , name T0548AL396_1-D2 # Molecule2: number of CA atoms 60 ( 491), selected 57 , name T0548-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548AL396_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 57 47 - 106 2.78 2.78 LCS_AVERAGE: 95.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 39 61 - 102 1.97 3.25 LCS_AVERAGE: 57.72 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 83 - 101 0.90 4.13 LONGEST_CONTINUOUS_SEGMENT: 19 84 - 102 0.91 3.45 LCS_AVERAGE: 26.17 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 57 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT D 47 D 47 8 29 57 5 6 29 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT Q 48 Q 48 16 29 57 5 6 8 37 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT F 49 F 49 17 29 57 11 22 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT T 50 T 50 17 29 57 11 18 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT F 51 F 51 17 29 57 11 18 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT E 52 E 52 17 29 57 11 22 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT L 53 L 53 17 29 57 11 22 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT L 54 L 54 17 29 57 11 22 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT D 55 D 55 17 29 57 11 22 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT F 56 F 56 17 29 57 11 22 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT L 57 L 57 17 29 57 11 21 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT H 58 H 58 17 29 57 11 22 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT Q 59 Q 59 17 29 57 11 21 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT L 60 L 60 17 29 57 9 18 29 38 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT T 61 T 61 17 39 57 4 21 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT H 62 H 62 17 39 57 11 22 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT L 63 L 63 17 39 57 11 22 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT S 64 S 64 17 39 57 11 22 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT F 65 F 65 17 39 57 6 22 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT S 66 S 66 15 39 57 6 14 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT K 67 K 67 15 39 57 6 20 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT M 68 M 68 15 39 57 6 13 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT K 69 K 69 15 39 57 6 14 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT A 70 A 70 15 39 57 6 13 25 35 42 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT L 71 L 71 15 39 57 6 13 24 35 41 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT L 72 L 72 15 39 57 6 13 21 34 41 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT E 73 E 73 15 39 57 6 13 22 35 42 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT R 74 R 74 15 39 57 6 13 20 28 41 43 49 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT S 75 S 75 15 39 57 3 7 10 23 34 42 49 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT Y 79 Y 79 3 39 57 5 6 6 10 12 20 46 51 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT Y 80 Y 80 6 39 57 0 6 9 37 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT M 81 M 81 14 39 57 3 9 26 36 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT L 82 L 82 17 39 57 3 9 16 31 38 45 49 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT N 83 N 83 19 39 57 3 9 16 31 38 45 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT R 84 R 84 19 39 57 9 22 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT D 85 D 85 19 39 57 7 22 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT R 86 R 86 19 39 57 9 22 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT T 87 T 87 19 39 57 11 22 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT L 88 L 88 19 39 57 11 22 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT K 89 K 89 19 39 57 11 22 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT N 90 N 90 19 39 57 11 22 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT I 91 I 91 19 39 57 11 22 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT T 92 T 92 19 39 57 8 22 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT E 93 E 93 19 39 57 6 21 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT T 94 T 94 19 39 57 6 21 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT C 95 C 95 19 39 57 6 22 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT K 96 K 96 19 39 57 11 22 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT A 97 A 97 19 39 57 11 22 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT C 98 C 98 19 39 57 11 22 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT A 99 A 99 19 39 57 10 22 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT Q 100 Q 100 19 39 57 5 22 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT V 101 V 101 19 39 57 11 22 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT N 102 N 102 19 39 57 3 14 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT A 103 A 103 3 25 57 3 3 4 24 34 46 50 53 54 54 55 55 56 56 57 57 57 57 57 57 LCS_GDT S 104 S 104 3 12 57 3 3 4 8 15 32 39 48 50 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT K 105 K 105 3 5 57 3 3 4 8 11 15 34 40 49 50 54 55 56 56 57 57 57 57 57 57 LCS_GDT S 106 S 106 3 5 57 0 3 4 6 10 12 21 26 44 47 51 52 55 56 57 57 57 57 57 57 LCS_AVERAGE LCS_A: 59.63 ( 26.17 57.72 95.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 22 31 40 44 48 50 53 54 54 55 55 56 56 57 57 57 57 57 57 GDT PERCENT_AT 18.33 36.67 51.67 66.67 73.33 80.00 83.33 88.33 90.00 90.00 91.67 91.67 93.33 93.33 95.00 95.00 95.00 95.00 95.00 95.00 GDT RMS_LOCAL 0.25 0.63 0.87 1.24 1.38 1.66 1.86 2.09 2.15 2.15 2.33 2.33 2.52 2.52 2.78 2.78 2.78 2.78 2.78 2.78 GDT RMS_ALL_AT 4.22 3.27 3.48 3.05 3.10 2.96 2.93 2.93 2.94 2.94 2.85 2.85 2.80 2.80 2.78 2.78 2.78 2.78 2.78 2.78 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA D 47 D 47 2.201 4 0.042 0.042 2.222 64.762 32.381 LGA Q 48 Q 48 2.487 5 0.170 0.170 2.502 64.881 28.836 LGA F 49 F 49 0.846 7 0.175 0.175 0.945 90.476 32.900 LGA T 50 T 50 1.047 3 0.031 0.031 1.057 85.952 49.116 LGA F 51 F 51 1.195 7 0.023 0.023 1.200 85.952 31.255 LGA E 52 E 52 1.376 5 0.026 0.026 1.456 81.429 36.190 LGA L 53 L 53 1.206 4 0.027 0.027 1.593 81.548 40.774 LGA L 54 L 54 0.958 4 0.033 0.033 1.020 88.214 44.107 LGA D 55 D 55 1.407 4 0.047 0.047 1.830 79.405 39.702 LGA F 56 F 56 2.476 7 0.033 0.033 2.791 62.857 22.857 LGA L 57 L 57 2.391 4 0.112 0.112 2.391 64.762 32.381 LGA H 58 H 58 1.652 6 0.025 0.025 2.134 68.810 27.524 LGA Q 59 Q 59 2.589 5 0.129 0.129 2.800 59.048 26.243 LGA L 60 L 60 3.311 4 0.166 0.166 3.311 55.476 27.738 LGA T 61 T 61 2.308 3 0.259 0.259 2.559 66.905 38.231 LGA H 62 H 62 0.877 6 0.113 0.113 1.387 88.214 35.286 LGA L 63 L 63 1.120 4 0.020 0.020 1.120 88.214 44.107 LGA S 64 S 64 0.995 2 0.095 0.095 1.085 88.214 58.810 LGA F 65 F 65 0.804 7 0.039 0.039 0.944 95.238 34.632 LGA S 66 S 66 1.185 2 0.061 0.061 1.761 81.548 54.365 LGA K 67 K 67 0.513 5 0.094 0.094 1.646 88.452 39.312 LGA M 68 M 68 1.348 4 0.006 0.006 1.968 81.548 40.774 LGA K 69 K 69 1.370 5 0.060 0.060 2.054 75.119 33.386 LGA A 70 A 70 2.277 1 0.043 0.043 2.700 62.976 50.381 LGA L 71 L 71 2.812 4 0.101 0.101 2.812 57.143 28.571 LGA L 72 L 72 2.842 4 0.048 0.048 3.227 55.357 27.679 LGA E 73 E 73 2.755 5 0.024 0.024 3.463 53.571 23.810 LGA R 74 R 74 4.013 7 0.128 0.128 4.384 40.357 14.675 LGA S 75 S 75 4.329 2 0.115 0.115 5.104 32.976 21.984 LGA Y 79 Y 79 4.495 8 0.082 0.082 4.996 38.810 12.937 LGA Y 80 Y 80 2.869 8 0.166 0.166 3.455 61.190 20.397 LGA M 81 M 81 2.665 4 0.241 0.241 2.890 62.976 31.488 LGA L 82 L 82 4.279 4 0.011 0.011 4.279 41.786 20.893 LGA N 83 N 83 3.967 4 0.116 0.116 4.038 48.690 24.345 LGA R 84 R 84 1.944 7 0.098 0.098 2.684 71.071 25.844 LGA D 85 D 85 1.463 4 0.026 0.026 1.683 81.548 40.774 LGA R 86 R 86 0.814 7 0.016 0.016 1.139 90.595 32.944 LGA T 87 T 87 0.727 3 0.054 0.054 0.727 90.476 51.701 LGA L 88 L 88 0.596 4 0.020 0.020 0.704 92.857 46.429 LGA K 89 K 89 0.710 5 0.104 0.104 1.053 88.214 39.206 LGA N 90 N 90 0.744 4 0.034 0.034 1.201 90.595 45.298 LGA I 91 I 91 0.291 4 0.031 0.031 0.855 95.238 47.619 LGA T 92 T 92 1.078 3 0.096 0.096 1.357 83.690 47.823 LGA E 93 E 93 2.328 5 0.022 0.022 2.795 64.881 28.836 LGA T 94 T 94 2.269 3 0.025 0.025 2.269 66.786 38.163 LGA C 95 C 95 1.125 2 0.058 0.058 1.410 81.429 54.286 LGA K 96 K 96 1.384 5 0.102 0.102 1.384 85.952 38.201 LGA A 97 A 97 0.581 1 0.047 0.047 0.770 90.476 72.381 LGA C 98 C 98 0.670 2 0.089 0.089 1.017 88.214 58.810 LGA A 99 A 99 0.948 1 0.037 0.037 1.347 85.952 68.762 LGA Q 100 Q 100 1.666 5 0.218 0.218 2.003 72.976 32.434 LGA V 101 V 101 1.646 3 0.171 0.171 1.687 75.000 42.857 LGA N 102 N 102 1.120 4 0.659 0.659 1.556 81.548 40.774 LGA A 103 A 103 4.316 1 0.671 0.671 6.994 31.667 25.333 LGA S 104 S 104 7.242 2 0.398 0.398 7.341 14.881 9.921 LGA K 105 K 105 8.293 5 0.490 0.490 11.463 2.500 1.111 LGA S 106 S 106 10.852 2 0.564 0.564 10.852 1.905 1.270 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 57 228 228 100.00 468 228 48.72 60 SUMMARY(RMSD_GDC): 2.778 2.730 2.730 66.188 33.647 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 57 60 4.0 53 2.09 71.667 71.689 2.424 LGA_LOCAL RMSD: 2.086 Number of atoms: 53 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.932 Number of assigned atoms: 57 Std_ASGN_ATOMS RMSD: 2.778 Standard rmsd on all 57 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.723891 * X + -0.191131 * Y + 0.662911 * Z + 59.544037 Y_new = -0.593983 * X + 0.316118 * Y + 0.739766 * Z + -28.369045 Z_new = -0.350950 * X + -0.929268 * Y + 0.115307 * Z + 29.030058 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.687142 0.358586 -1.447344 [DEG: -39.3703 20.5454 -82.9267 ] ZXZ: 2.410931 1.455233 -2.780489 [DEG: 138.1362 83.3787 -159.3103 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548AL396_1-D2 REMARK 2: T0548-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548AL396_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 57 60 4.0 53 2.09 71.689 2.78 REMARK ---------------------------------------------------------- MOLECULE T0548AL396_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 3l2t_A ATOM 141 N ASP 47 -35.825 -20.894 30.093 1.00 0.00 N ATOM 142 CA ASP 47 -34.655 -20.015 30.138 1.00 0.00 C ATOM 143 C ASP 47 -33.484 -20.645 30.889 1.00 0.00 C ATOM 144 O ASP 47 -32.354 -20.598 30.420 1.00 0.00 O ATOM 145 N GLN 48 -33.753 -21.253 32.044 1.00 0.00 N ATOM 146 CA GLN 48 -32.680 -21.795 32.885 1.00 0.00 C ATOM 147 C GLN 48 -31.871 -22.914 32.205 1.00 0.00 C ATOM 148 O GLN 48 -30.841 -23.332 32.712 1.00 0.00 O ATOM 149 N PHE 49 -32.341 -23.385 31.057 1.00 0.00 N ATOM 150 CA PHE 49 -31.716 -24.507 30.367 1.00 0.00 C ATOM 151 C PHE 49 -30.899 -24.109 29.138 1.00 0.00 C ATOM 152 O PHE 49 -30.071 -24.875 28.648 1.00 0.00 O ATOM 153 N THR 50 -31.153 -22.907 28.643 1.00 0.00 N ATOM 154 CA THR 50 -30.686 -22.478 27.347 1.00 0.00 C ATOM 155 C THR 50 -29.169 -22.343 27.253 1.00 0.00 C ATOM 156 O THR 50 -28.566 -22.729 26.253 1.00 0.00 O ATOM 157 N PHE 51 -28.546 -21.805 28.293 1.00 0.00 N ATOM 158 CA PHE 51 -27.105 -21.675 28.279 1.00 0.00 C ATOM 159 C PHE 51 -26.479 -23.062 28.149 1.00 0.00 C ATOM 160 O PHE 51 -25.605 -23.258 27.331 1.00 0.00 O ATOM 161 N GLU 52 -26.950 -24.020 28.942 1.00 0.00 N ATOM 162 CA GLU 52 -26.495 -25.427 28.875 1.00 0.00 C ATOM 163 C GLU 52 -26.701 -25.981 27.469 1.00 0.00 C ATOM 164 O GLU 52 -25.839 -26.684 26.958 1.00 0.00 O ATOM 165 N LEU 53 -27.832 -25.642 26.846 1.00 0.00 N ATOM 166 CA LEU 53 -28.141 -26.083 25.483 1.00 0.00 C ATOM 167 C LEU 53 -27.163 -25.513 24.455 1.00 0.00 C ATOM 168 O LEU 53 -26.594 -26.276 23.658 1.00 0.00 O ATOM 169 N LEU 54 -26.958 -24.196 24.496 1.00 0.00 N ATOM 170 CA LEU 54 -26.099 -23.494 23.543 1.00 0.00 C ATOM 171 C LEU 54 -24.680 -24.046 23.639 1.00 0.00 C ATOM 172 O LEU 54 -23.983 -24.193 22.641 1.00 0.00 O ATOM 173 N ASP 55 -24.276 -24.380 24.853 1.00 0.00 N ATOM 174 CA ASP 55 -22.950 -24.867 25.097 1.00 0.00 C ATOM 175 C ASP 55 -22.777 -26.224 24.478 1.00 0.00 C ATOM 176 O ASP 55 -21.724 -26.533 23.939 1.00 0.00 O ATOM 177 N PHE 56 -23.815 -27.044 24.570 1.00 0.00 N ATOM 178 CA PHE 56 -23.741 -28.418 24.093 1.00 0.00 C ATOM 179 C PHE 56 -23.561 -28.405 22.597 1.00 0.00 C ATOM 180 O PHE 56 -22.715 -29.145 22.060 1.00 0.00 O ATOM 181 N LEU 57 -24.353 -27.549 21.944 1.00 0.00 N ATOM 182 CA LEU 57 -24.329 -27.428 20.500 1.00 0.00 C ATOM 183 C LEU 57 -22.961 -26.946 20.130 1.00 0.00 C ATOM 184 O LEU 57 -22.257 -27.608 19.383 1.00 0.00 O ATOM 185 N HIS 58 -22.553 -25.824 20.704 1.00 0.00 N ATOM 186 CA HIS 58 -21.246 -25.278 20.408 1.00 0.00 C ATOM 187 C HIS 58 -20.094 -26.272 20.588 1.00 0.00 C ATOM 188 O HIS 58 -19.172 -26.325 19.772 1.00 0.00 O ATOM 189 N GLN 59 -20.129 -27.064 21.639 1.00 0.00 N ATOM 190 CA GLN 59 -18.965 -27.875 21.923 1.00 0.00 C ATOM 191 C GLN 59 -18.773 -29.067 20.995 1.00 0.00 C ATOM 192 O GLN 59 -17.685 -29.687 21.007 1.00 0.00 O ATOM 193 N LEU 60 -19.810 -29.399 20.201 1.00 0.00 N ATOM 194 CA LEU 60 -19.719 -30.566 19.302 1.00 0.00 C ATOM 195 C LEU 60 -18.504 -30.416 18.432 1.00 0.00 C ATOM 196 O LEU 60 -17.701 -31.328 18.376 1.00 0.00 O ATOM 197 N THR 61 -18.335 -29.245 17.816 1.00 0.00 N ATOM 198 CA THR 61 -17.115 -28.957 17.061 1.00 0.00 C ATOM 199 C THR 61 -16.591 -27.531 17.228 1.00 0.00 C ATOM 200 O THR 61 -15.843 -27.049 16.376 1.00 0.00 O ATOM 201 N HIS 62 -16.985 -26.857 18.311 1.00 0.00 N ATOM 202 CA HIS 62 -16.575 -25.465 18.571 1.00 0.00 C ATOM 203 C HIS 62 -16.814 -24.593 17.362 1.00 0.00 C ATOM 204 O HIS 62 -15.914 -23.861 16.904 1.00 0.00 O ATOM 205 N LEU 63 -18.043 -24.707 16.850 1.00 0.00 N ATOM 206 CA LEU 63 -18.506 -23.931 15.706 1.00 0.00 C ATOM 207 C LEU 63 -18.810 -22.477 16.070 1.00 0.00 C ATOM 208 O LEU 63 -19.185 -22.156 17.217 1.00 0.00 O ATOM 209 N SER 64 -18.642 -21.613 15.073 1.00 0.00 N ATOM 210 CA SER 64 -18.988 -20.190 15.166 1.00 0.00 C ATOM 211 C SER 64 -20.484 -19.921 15.246 1.00 0.00 C ATOM 212 O SER 64 -21.260 -20.808 15.603 1.00 0.00 O ATOM 213 N PHE 65 -20.898 -18.701 14.905 1.00 0.00 N ATOM 214 CA PHE 65 -22.282 -18.284 15.161 1.00 0.00 C ATOM 215 C PHE 65 -23.288 -19.129 14.399 1.00 0.00 C ATOM 216 O PHE 65 -24.044 -19.869 15.011 1.00 0.00 O ATOM 217 N SER 66 -23.279 -19.036 13.069 1.00 0.00 N ATOM 218 CA SER 66 -24.310 -19.675 12.264 1.00 0.00 C ATOM 219 C SER 66 -24.274 -21.203 12.360 1.00 0.00 C ATOM 220 O SER 66 -25.316 -21.869 12.526 1.00 0.00 O ATOM 221 N LYS 67 -23.080 -21.769 12.303 1.00 0.00 N ATOM 222 CA LYS 67 -23.009 -23.219 12.384 1.00 0.00 C ATOM 223 C LYS 67 -23.512 -23.736 13.744 1.00 0.00 C ATOM 224 O LYS 67 -24.084 -24.829 13.820 1.00 0.00 O ATOM 225 N MET 68 -23.340 -22.951 14.803 1.00 0.00 N ATOM 226 CA MET 68 -23.882 -23.340 16.109 1.00 0.00 C ATOM 227 C MET 68 -25.392 -23.163 16.131 1.00 0.00 C ATOM 228 O MET 68 -26.129 -24.057 16.550 1.00 0.00 O ATOM 229 N LYS 69 -25.853 -22.006 15.681 1.00 0.00 N ATOM 230 CA LYS 69 -27.279 -21.786 15.632 1.00 0.00 C ATOM 231 C LYS 69 -28.012 -22.869 14.789 1.00 0.00 C ATOM 232 O LYS 69 -29.069 -23.361 15.186 1.00 0.00 O ATOM 233 N ALA 70 -27.443 -23.247 13.645 1.00 0.00 N ATOM 234 CA ALA 70 -28.074 -24.272 12.803 1.00 0.00 C ATOM 235 C ALA 70 -28.341 -25.602 13.492 1.00 0.00 C ATOM 236 O ALA 70 -29.345 -26.246 13.188 1.00 0.00 O ATOM 237 N LEU 71 -27.464 -26.014 14.410 1.00 0.00 N ATOM 238 CA LEU 71 -27.727 -27.221 15.172 1.00 0.00 C ATOM 239 C LEU 71 -28.893 -26.939 16.071 1.00 0.00 C ATOM 240 O LEU 71 -29.893 -27.641 16.031 1.00 0.00 O ATOM 241 N LEU 72 -28.775 -25.892 16.874 1.00 0.00 N ATOM 242 CA LEU 72 -29.779 -25.599 17.895 1.00 0.00 C ATOM 243 C LEU 72 -31.154 -25.499 17.244 1.00 0.00 C ATOM 244 O LEU 72 -32.134 -26.038 17.757 1.00 0.00 O ATOM 245 N GLU 73 -31.207 -24.852 16.085 1.00 0.00 N ATOM 246 CA GLU 73 -32.455 -24.664 15.368 1.00 0.00 C ATOM 247 C GLU 73 -33.116 -25.992 15.008 1.00 0.00 C ATOM 248 O GLU 73 -34.337 -26.081 14.999 1.00 0.00 O ATOM 249 N ARG 74 -32.337 -27.024 14.718 1.00 0.00 N ATOM 250 CA ARG 74 -32.950 -28.330 14.517 1.00 0.00 C ATOM 251 C ARG 74 -33.990 -28.710 15.558 1.00 0.00 C ATOM 252 O ARG 74 -35.052 -29.210 15.215 1.00 0.00 O ATOM 253 N SER 75 -33.687 -28.453 16.822 1.00 0.00 N ATOM 254 CA SER 75 -34.538 -28.925 17.891 1.00 0.00 C ATOM 255 C SER 75 -35.296 -27.842 18.601 1.00 0.00 C ATOM 256 O SER 75 -36.439 -28.077 19.018 1.00 0.00 O ATOM 257 N TYR 79 -34.688 -26.672 18.763 1.00 0.00 N ATOM 258 CA TYR 79 -35.309 -25.679 19.633 1.00 0.00 C ATOM 259 C TYR 79 -35.708 -24.405 18.975 1.00 0.00 C ATOM 260 O TYR 79 -35.313 -24.123 17.855 1.00 0.00 O ATOM 261 N TYR 80 -36.542 -23.656 19.677 1.00 0.00 N ATOM 262 CA TYR 80 -36.734 -22.252 19.365 1.00 0.00 C ATOM 263 C TYR 80 -36.869 -21.417 20.639 1.00 0.00 C ATOM 264 O TYR 80 -37.372 -21.903 21.650 1.00 0.00 O ATOM 265 N MET 81 -36.374 -20.186 20.587 1.00 0.00 N ATOM 266 CA MET 81 -36.660 -19.194 21.596 1.00 0.00 C ATOM 267 C MET 81 -36.262 -17.805 21.094 1.00 0.00 C ATOM 268 O MET 81 -35.502 -17.694 20.117 1.00 0.00 O ATOM 269 N LEU 82 -36.771 -16.734 21.738 1.00 0.00 N ATOM 270 CA LEU 82 -36.496 -15.375 21.292 1.00 0.00 C ATOM 271 C LEU 82 -35.021 -15.081 21.317 1.00 0.00 C ATOM 272 O LEU 82 -34.361 -15.344 22.333 1.00 0.00 O ATOM 273 N ASN 83 -34.528 -14.560 20.191 1.00 0.00 N ATOM 274 CA ASN 83 -33.162 -14.053 20.059 1.00 0.00 C ATOM 275 C ASN 83 -32.135 -15.122 20.415 1.00 0.00 C ATOM 276 O ASN 83 -31.345 -14.980 21.352 1.00 0.00 O ATOM 277 N ARG 84 -32.170 -16.205 19.656 1.00 0.00 N ATOM 278 CA ARG 84 -31.248 -17.297 19.826 1.00 0.00 C ATOM 279 C ARG 84 -29.815 -16.883 19.608 1.00 0.00 C ATOM 280 O ARG 84 -28.934 -17.204 20.412 1.00 0.00 O ATOM 281 N ASP 85 -29.553 -16.145 18.542 1.00 0.00 N ATOM 282 CA ASP 85 -28.152 -15.800 18.284 1.00 0.00 C ATOM 283 C ASP 85 -27.536 -14.984 19.418 1.00 0.00 C ATOM 284 O ASP 85 -26.351 -15.167 19.705 1.00 0.00 O ATOM 285 N ARG 86 -28.337 -14.142 20.093 1.00 0.00 N ATOM 286 CA ARG 86 -27.817 -13.345 21.224 1.00 0.00 C ATOM 287 C ARG 86 -27.190 -14.282 22.266 1.00 0.00 C ATOM 288 O ARG 86 -26.042 -14.086 22.691 1.00 0.00 O ATOM 289 N THR 87 -27.911 -15.334 22.626 1.00 0.00 N ATOM 290 CA THR 87 -27.344 -16.346 23.504 1.00 0.00 C ATOM 291 C THR 87 -26.178 -17.099 22.865 1.00 0.00 C ATOM 292 O THR 87 -25.242 -17.477 23.577 1.00 0.00 O ATOM 293 N LEU 88 -26.217 -17.323 21.546 1.00 0.00 N ATOM 294 CA LEU 88 -25.114 -18.036 20.904 1.00 0.00 C ATOM 295 C LEU 88 -23.857 -17.191 20.998 1.00 0.00 C ATOM 296 O LEU 88 -22.777 -17.683 21.309 1.00 0.00 O ATOM 297 N LYS 89 -24.007 -15.898 20.763 1.00 0.00 N ATOM 298 CA LYS 89 -22.846 -15.020 20.756 1.00 0.00 C ATOM 299 C LYS 89 -22.302 -14.874 22.159 1.00 0.00 C ATOM 300 O LYS 89 -21.107 -14.778 22.334 1.00 0.00 O ATOM 301 N ASN 90 -23.180 -14.878 23.163 1.00 0.00 N ATOM 302 CA ASN 90 -22.723 -14.762 24.558 1.00 0.00 C ATOM 303 C ASN 90 -21.766 -15.907 24.855 1.00 0.00 C ATOM 304 O ASN 90 -20.729 -15.697 25.497 1.00 0.00 O ATOM 305 N ILE 91 -22.099 -17.099 24.354 1.00 0.00 N ATOM 306 CA ILE 91 -21.236 -18.249 24.517 1.00 0.00 C ATOM 307 C ILE 91 -19.910 -18.078 23.826 1.00 0.00 C ATOM 308 O ILE 91 -18.864 -18.182 24.474 1.00 0.00 O ATOM 309 N THR 92 -19.940 -17.789 22.526 1.00 0.00 N ATOM 310 CA THR 92 -18.720 -17.664 21.742 1.00 0.00 C ATOM 311 C THR 92 -17.691 -16.725 22.357 1.00 0.00 C ATOM 312 O THR 92 -16.498 -16.939 22.172 1.00 0.00 O ATOM 313 N GLU 93 -18.134 -15.709 23.093 1.00 0.00 N ATOM 314 CA GLU 93 -17.220 -14.759 23.709 1.00 0.00 C ATOM 315 C GLU 93 -16.601 -15.281 24.993 1.00 0.00 C ATOM 316 O GLU 93 -15.624 -14.715 25.475 1.00 0.00 O ATOM 317 N THR 94 -17.172 -16.351 25.543 1.00 0.00 N ATOM 318 CA THR 94 -16.663 -16.982 26.772 1.00 0.00 C ATOM 319 C THR 94 -15.930 -18.310 26.537 1.00 0.00 C ATOM 320 O THR 94 -15.504 -18.953 27.509 1.00 0.00 O ATOM 321 N CYS 95 -15.805 -18.744 25.276 1.00 0.00 N ATOM 322 CA CYS 95 -15.107 -19.993 24.976 1.00 0.00 C ATOM 323 C CYS 95 -13.623 -19.702 24.887 1.00 0.00 C ATOM 324 O CYS 95 -13.143 -19.182 23.892 1.00 0.00 O ATOM 325 N LYS 96 -12.886 -20.020 25.938 1.00 0.00 N ATOM 326 CA LYS 96 -11.460 -19.727 25.927 1.00 0.00 C ATOM 327 C LYS 96 -10.812 -20.312 24.654 1.00 0.00 C ATOM 328 O LYS 96 -10.073 -19.611 23.969 1.00 0.00 O ATOM 329 N ALA 97 -11.146 -21.561 24.309 1.00 0.00 N ATOM 330 CA ALA 97 -10.494 -22.262 23.202 1.00 0.00 C ATOM 331 C ALA 97 -10.762 -21.656 21.828 1.00 0.00 C ATOM 332 O ALA 97 -9.841 -21.499 20.995 1.00 0.00 O ATOM 333 N CYS 98 -12.029 -21.346 21.568 1.00 0.00 N ATOM 334 CA CYS 98 -12.340 -20.618 20.342 1.00 0.00 C ATOM 335 C CYS 98 -11.532 -19.324 20.225 1.00 0.00 C ATOM 336 O CYS 98 -10.867 -19.127 19.213 1.00 0.00 O ATOM 337 N ALA 99 -11.517 -18.493 21.272 1.00 0.00 N ATOM 338 CA ALA 99 -10.842 -17.199 21.156 1.00 0.00 C ATOM 339 C ALA 99 -9.342 -17.316 20.914 1.00 0.00 C ATOM 340 O ALA 99 -8.762 -16.510 20.184 1.00 0.00 O ATOM 341 N GLN 100 -8.704 -18.295 21.535 1.00 0.00 N ATOM 342 CA GLN 100 -7.253 -18.386 21.403 1.00 0.00 C ATOM 343 C GLN 100 -6.837 -19.235 20.208 1.00 0.00 C ATOM 344 O GLN 100 -5.649 -19.271 19.879 1.00 0.00 O ATOM 345 N VAL 101 -7.809 -19.889 19.555 1.00 0.00 N ATOM 346 CA VAL 101 -7.499 -20.778 18.419 1.00 0.00 C ATOM 347 C VAL 101 -7.923 -20.259 17.063 1.00 0.00 C ATOM 348 O VAL 101 -7.173 -20.383 16.121 1.00 0.00 O ATOM 349 N ASN 102 -9.111 -19.682 16.981 1.00 0.00 N ATOM 350 CA ASN 102 -9.619 -19.131 15.741 1.00 0.00 C ATOM 351 C ASN 102 -8.759 -18.035 15.116 1.00 0.00 C ATOM 352 O ASN 102 -7.944 -17.412 15.784 1.00 0.00 O ATOM 353 N ALA 103 -8.942 -17.813 13.812 1.00 0.00 N ATOM 354 CA ALA 103 -8.200 -16.813 13.058 1.00 0.00 C ATOM 355 C ALA 103 -8.981 -15.519 13.115 1.00 0.00 C ATOM 356 O ALA 103 -10.199 -15.545 13.413 1.00 0.00 O ATOM 357 N SER 104 -8.294 -14.399 12.841 1.00 0.00 N ATOM 358 CA SER 104 -8.962 -13.121 12.712 1.00 0.00 C ATOM 359 C SER 104 -9.615 -13.063 11.366 1.00 0.00 C ATOM 360 O SER 104 -9.098 -13.609 10.401 1.00 0.00 O ATOM 361 N LYS 105 -10.740 -12.389 11.244 1.00 0.00 N ATOM 362 CA LYS 105 -11.163 -12.114 9.892 1.00 0.00 C ATOM 363 C LYS 105 -11.193 -10.604 9.678 1.00 0.00 C ATOM 364 O LYS 105 -11.929 -10.107 8.844 1.00 0.00 O ATOM 365 N SER 106 -10.368 -9.885 10.423 1.00 0.00 N ATOM 366 CA SER 106 -10.206 -8.452 10.224 1.00 0.00 C ATOM 367 C SER 106 -8.754 -8.069 9.926 1.00 0.00 C ATOM 368 O SER 106 -7.873 -8.334 10.717 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 228 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 32.44 82.7 110 93.2 118 ARMSMC SECONDARY STRUCTURE . . 25.57 85.9 85 98.8 86 ARMSMC SURFACE . . . . . . . . 34.54 80.2 86 91.5 94 ARMSMC BURIED . . . . . . . . 23.44 91.7 24 100.0 24 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 56 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 55 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 40 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 44 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 42 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 27 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 31 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 13 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 14 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 8 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 7 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.78 (Number of atoms: 57) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.78 57 95.0 60 CRMSCA CRN = ALL/NP . . . . . 0.0487 CRMSCA SECONDARY STRUCTURE . . 2.00 43 100.0 43 CRMSCA SURFACE . . . . . . . . 2.98 45 93.8 48 CRMSCA BURIED . . . . . . . . 1.82 12 100.0 12 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.73 228 76.0 300 CRMSMC SECONDARY STRUCTURE . . 2.01 172 80.0 215 CRMSMC SURFACE . . . . . . . . 2.92 180 75.0 240 CRMSMC BURIED . . . . . . . . 1.85 48 80.0 60 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 251 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 207 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 184 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 203 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 48 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.73 228 46.4 491 CRMSALL SECONDARY STRUCTURE . . 2.01 172 48.3 356 CRMSALL SURFACE . . . . . . . . 2.92 180 45.6 395 CRMSALL BURIED . . . . . . . . 1.85 48 50.0 96 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.273 1.000 0.500 57 95.0 60 ERRCA SECONDARY STRUCTURE . . 1.804 1.000 0.500 43 100.0 43 ERRCA SURFACE . . . . . . . . 2.448 1.000 0.500 45 93.8 48 ERRCA BURIED . . . . . . . . 1.616 1.000 0.500 12 100.0 12 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.240 1.000 0.500 228 76.0 300 ERRMC SECONDARY STRUCTURE . . 1.803 1.000 0.500 172 80.0 215 ERRMC SURFACE . . . . . . . . 2.401 1.000 0.500 180 75.0 240 ERRMC BURIED . . . . . . . . 1.635 1.000 0.500 48 80.0 60 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 251 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 207 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 184 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 203 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 48 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.240 1.000 0.500 228 46.4 491 ERRALL SECONDARY STRUCTURE . . 1.803 1.000 0.500 172 48.3 356 ERRALL SURFACE . . . . . . . . 2.401 1.000 0.500 180 45.6 395 ERRALL BURIED . . . . . . . . 1.635 1.000 0.500 48 50.0 96 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 8 30 45 53 57 57 60 DISTCA CA (P) 13.33 50.00 75.00 88.33 95.00 60 DISTCA CA (RMS) 0.73 1.25 1.75 2.23 2.78 DISTCA ALL (N) 45 125 180 214 228 228 491 DISTALL ALL (P) 9.16 25.46 36.66 43.58 46.44 491 DISTALL ALL (RMS) 0.79 1.30 1.73 2.22 2.73 DISTALL END of the results output