####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 24 ( 96), selected 24 , name T0548AL396_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 24 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 12 - 24 4.54 9.69 LONGEST_CONTINUOUS_SEGMENT: 13 17 - 29 4.83 11.85 LCS_AVERAGE: 36.43 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 12 - 18 0.92 10.18 LCS_AVERAGE: 15.48 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 12 - 18 0.92 10.18 LCS_AVERAGE: 14.52 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 24 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 7 7 13 5 6 8 8 8 8 9 9 9 10 11 12 13 15 15 16 16 17 18 18 LCS_GDT F 13 F 13 7 7 13 5 6 8 8 8 8 9 9 9 10 11 12 13 15 15 16 16 17 18 18 LCS_GDT H 14 H 14 7 7 13 5 6 8 8 8 8 9 9 9 10 11 12 13 15 15 16 16 17 18 18 LCS_GDT Y 15 Y 15 7 7 13 4 6 8 8 8 8 9 9 9 10 11 12 13 15 15 16 16 18 20 20 LCS_GDT T 16 T 16 7 7 13 4 6 8 8 8 8 9 9 9 10 11 13 13 15 15 16 18 19 20 20 LCS_GDT V 17 V 17 7 7 13 5 6 8 8 8 8 9 9 11 12 12 13 14 16 17 18 18 19 20 20 LCS_GDT T 18 T 18 7 7 13 3 4 8 8 8 8 9 9 11 12 12 13 14 16 17 18 18 19 20 20 LCS_GDT D 19 D 19 3 5 13 3 3 4 4 4 4 5 6 8 8 11 12 14 16 17 18 18 19 20 20 LCS_GDT I 20 I 20 3 5 13 3 3 4 4 4 4 6 7 9 10 11 12 13 16 17 18 18 19 20 20 LCS_GDT K 21 K 21 3 5 13 5 6 8 8 8 8 9 9 9 10 11 12 13 15 17 18 18 19 20 20 LCS_GDT D 22 D 22 3 5 13 3 3 3 4 5 5 6 9 9 11 12 13 14 16 17 18 18 19 20 20 LCS_GDT L 23 L 23 3 3 13 3 3 3 4 5 6 9 9 11 12 12 13 14 16 17 18 18 19 20 20 LCS_GDT T 24 T 24 3 3 13 0 3 3 4 5 5 5 6 11 12 12 13 14 16 17 18 18 19 20 20 LCS_GDT K 25 K 25 4 4 13 1 4 4 4 4 5 6 8 11 12 12 13 14 16 17 18 18 19 20 20 LCS_GDT L 26 L 26 4 4 13 3 4 4 4 4 5 6 8 11 12 12 13 14 16 17 18 18 19 20 20 LCS_GDT G 27 G 27 4 4 13 3 4 4 4 4 5 5 8 11 12 12 13 14 16 17 18 18 19 20 20 LCS_GDT A 28 A 28 4 4 13 3 4 4 4 4 5 5 6 9 12 12 13 14 16 17 18 18 19 20 20 LCS_GDT I 29 I 29 3 3 13 0 3 3 4 8 8 8 8 11 12 12 13 14 16 17 18 18 19 20 20 LCS_GDT G 41 G 41 6 6 12 4 4 6 6 6 6 6 6 7 8 9 10 11 11 12 15 16 17 19 20 LCS_GDT K 42 K 42 6 6 12 4 5 6 6 6 6 6 6 7 8 9 12 13 15 15 18 18 19 20 20 LCS_GDT P 43 P 43 6 6 12 4 5 6 6 6 6 6 7 7 10 11 13 14 16 17 18 18 19 20 20 LCS_GDT V 44 V 44 6 6 12 4 5 6 6 6 7 8 9 11 12 12 13 14 16 17 18 18 19 20 20 LCS_GDT M 45 M 45 6 6 12 3 5 6 6 6 6 6 8 11 12 12 13 14 16 17 18 18 19 20 20 LCS_GDT P 46 P 46 6 6 12 3 5 6 6 6 6 6 8 11 12 12 13 14 16 17 18 18 19 20 20 LCS_AVERAGE LCS_A: 22.14 ( 14.52 15.48 36.43 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 6 8 8 8 8 9 9 11 12 12 13 14 16 17 18 18 19 20 20 GDT PERCENT_AT 14.29 17.14 22.86 22.86 22.86 22.86 25.71 25.71 31.43 34.29 34.29 37.14 40.00 45.71 48.57 51.43 51.43 54.29 57.14 57.14 GDT RMS_LOCAL 0.26 0.57 0.86 0.86 0.86 0.86 1.77 1.74 3.59 3.76 3.76 4.01 4.32 4.90 5.12 5.43 5.43 5.73 6.21 6.10 GDT RMS_ALL_AT 10.81 10.55 10.33 10.33 10.33 10.33 9.91 11.24 10.35 10.32 10.32 10.48 10.60 10.53 10.68 10.60 10.60 10.41 10.19 10.36 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 0.469 6 0.648 0.648 3.000 86.905 34.762 LGA F 13 F 13 0.484 7 0.044 0.044 1.085 92.976 33.810 LGA H 14 H 14 0.653 6 0.018 0.018 1.326 88.214 35.286 LGA Y 15 Y 15 1.270 8 0.167 0.167 1.799 81.548 27.183 LGA T 16 T 16 1.171 3 0.058 0.058 1.171 85.952 49.116 LGA V 17 V 17 1.108 3 0.587 0.587 3.571 74.167 42.381 LGA T 18 T 18 1.849 3 0.594 0.594 3.676 63.690 36.395 LGA D 19 D 19 8.282 4 0.421 0.421 8.286 7.857 3.929 LGA I 20 I 20 7.083 4 0.282 0.282 7.448 20.714 10.357 LGA K 21 K 21 1.788 5 0.598 0.598 4.192 58.214 25.873 LGA D 22 D 22 3.954 4 0.641 0.641 4.237 49.167 24.583 LGA L 23 L 23 5.804 4 0.568 0.568 9.286 16.190 8.095 LGA T 24 T 24 11.753 3 0.607 0.607 14.837 0.357 0.204 LGA K 25 K 25 16.609 5 0.651 0.651 18.358 0.000 0.000 LGA L 26 L 26 16.537 4 0.662 0.662 18.950 0.000 0.000 LGA G 27 G 27 21.588 0 0.394 0.394 22.078 0.000 0.000 LGA A 28 A 28 18.197 1 0.600 0.600 20.591 0.000 0.000 LGA I 29 I 29 19.296 4 0.213 0.213 19.296 0.000 0.000 LGA G 41 G 41 18.080 0 0.539 0.539 18.080 0.000 0.000 LGA K 42 K 42 12.638 5 0.016 0.016 13.965 0.000 0.000 LGA P 43 P 43 11.759 3 0.050 0.050 12.327 1.071 0.612 LGA V 44 V 44 6.339 3 0.130 0.130 9.403 7.024 4.014 LGA M 45 M 45 11.740 4 0.102 0.102 11.763 0.357 0.179 LGA P 46 P 46 13.969 3 0.117 0.117 16.045 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 24 96 96 100.00 188 96 51.06 35 SUMMARY(RMSD_GDC): 8.938 8.964 8.964 20.983 9.622 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 24 35 4.0 9 1.74 29.286 25.736 0.488 LGA_LOCAL RMSD: 1.743 Number of atoms: 9 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 11.245 Number of assigned atoms: 24 Std_ASGN_ATOMS RMSD: 8.938 Standard rmsd on all 24 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.673485 * X + 0.432044 * Y + -0.599797 * Z + -40.671524 Y_new = 0.334580 * X + -0.901706 * Y + -0.273829 * Z + 14.076371 Z_new = -0.659146 * X + -0.016260 * Y + -0.751839 * Z + -68.319183 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.461075 0.719683 -3.119969 [DEG: 26.4177 41.2348 -178.7610 ] ZXZ: -1.142520 2.421643 -1.595460 [DEG: -65.4616 138.7499 -91.4131 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548AL396_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 24 35 4.0 9 1.74 25.736 8.94 REMARK ---------------------------------------------------------- MOLECULE T0548AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 3l2t_A ATOM 45 N HIS 12 -42.479 -28.293 34.060 1.00 0.00 N ATOM 46 CA HIS 12 -41.165 -28.957 34.224 1.00 0.00 C ATOM 47 C HIS 12 -40.071 -27.950 33.887 1.00 0.00 C ATOM 48 O HIS 12 -38.895 -28.159 34.196 1.00 0.00 O ATOM 49 N PHE 13 -40.481 -26.860 33.247 1.00 0.00 N ATOM 50 CA PHE 13 -39.578 -25.789 32.875 1.00 0.00 C ATOM 51 C PHE 13 -39.851 -24.596 33.752 1.00 0.00 C ATOM 52 O PHE 13 -40.998 -24.183 33.883 1.00 0.00 O ATOM 53 N HIS 14 -38.806 -24.054 34.372 1.00 0.00 N ATOM 54 CA HIS 14 -38.988 -22.874 35.233 1.00 0.00 C ATOM 55 C HIS 14 -39.034 -21.582 34.406 1.00 0.00 C ATOM 56 O HIS 14 -38.129 -21.293 33.607 1.00 0.00 O ATOM 57 N TYR 15 -40.132 -20.850 34.590 1.00 0.00 N ATOM 58 CA TYR 15 -40.371 -19.571 33.946 1.00 0.00 C ATOM 59 C TYR 15 -40.152 -18.470 34.974 1.00 0.00 C ATOM 60 O TYR 15 -40.961 -18.281 35.879 1.00 0.00 O ATOM 61 N THR 16 -39.059 -17.740 34.844 1.00 0.00 N ATOM 62 CA THR 16 -38.770 -16.691 35.802 1.00 0.00 C ATOM 63 C THR 16 -38.796 -15.302 35.168 1.00 0.00 C ATOM 64 O THR 16 -39.150 -15.157 33.996 1.00 0.00 O ATOM 65 N VAL 17 -38.441 -14.289 35.958 1.00 0.00 N ATOM 66 CA VAL 17 -38.448 -12.907 35.502 1.00 0.00 C ATOM 67 C VAL 17 -37.076 -12.273 35.672 1.00 0.00 C ATOM 68 O VAL 17 -36.427 -12.464 36.696 1.00 0.00 O ATOM 69 N THR 18 -36.647 -11.534 34.648 1.00 0.00 N ATOM 70 CA THR 18 -35.387 -10.771 34.642 1.00 0.00 C ATOM 71 C THR 18 -35.487 -9.595 33.680 1.00 0.00 C ATOM 72 O THR 18 -35.937 -9.764 32.548 1.00 0.00 O ATOM 73 N ASP 19 -35.064 -8.413 34.126 1.00 0.00 N ATOM 74 CA ASP 19 -35.069 -7.210 33.281 1.00 0.00 C ATOM 75 C ASP 19 -36.451 -6.892 32.715 1.00 0.00 C ATOM 76 O ASP 19 -36.574 -6.409 31.586 1.00 0.00 O ATOM 77 N ILE 20 -37.490 -7.187 33.487 1.00 0.00 N ATOM 78 CA ILE 20 -38.860 -6.963 33.032 1.00 0.00 C ATOM 79 C ILE 20 -39.284 -7.784 31.821 1.00 0.00 C ATOM 80 O ILE 20 -40.308 -7.486 31.210 1.00 0.00 O ATOM 81 N LYS 21 -38.499 -8.805 31.464 1.00 0.00 N ATOM 82 CA LYS 21 -38.874 -9.772 30.411 1.00 0.00 C ATOM 83 C LYS 21 -39.102 -11.161 31.035 1.00 0.00 C ATOM 84 O LYS 21 -38.411 -11.546 31.978 1.00 0.00 O ATOM 85 N ASP 22 -40.064 -11.908 30.510 1.00 0.00 N ATOM 86 CA ASP 22 -40.354 -13.233 31.038 1.00 0.00 C ATOM 87 C ASP 22 -39.422 -14.230 30.378 1.00 0.00 C ATOM 88 O ASP 22 -39.341 -14.276 29.155 1.00 0.00 O ATOM 89 N LEU 23 -38.715 -15.028 31.167 1.00 0.00 N ATOM 90 CA LEU 23 -37.707 -15.923 30.598 1.00 0.00 C ATOM 91 C LEU 23 -37.964 -17.363 30.945 1.00 0.00 C ATOM 92 O LEU 23 -38.665 -17.660 31.901 1.00 0.00 O ATOM 93 N THR 24 -37.381 -18.257 30.157 1.00 0.00 N ATOM 94 CA THR 24 -37.423 -19.681 30.456 1.00 0.00 C ATOM 95 C THR 24 -36.062 -20.357 30.269 1.00 0.00 C ATOM 96 O THR 24 -35.299 -20.026 29.355 1.00 0.00 O ATOM 97 N LYS 25 -35.774 -21.280 31.178 1.00 0.00 N ATOM 98 CA LYS 25 -34.583 -22.106 31.134 1.00 0.00 C ATOM 99 C LYS 25 -34.907 -23.346 30.312 1.00 0.00 C ATOM 100 O LYS 25 -35.911 -24.015 30.571 1.00 0.00 O ATOM 101 N LEU 26 -34.071 -23.644 29.319 1.00 0.00 N ATOM 102 CA LEU 26 -34.353 -24.722 28.363 1.00 0.00 C ATOM 103 C LEU 26 -33.098 -25.518 28.004 1.00 0.00 C ATOM 104 O LEU 26 -31.990 -24.999 28.113 1.00 0.00 O ATOM 105 N GLY 27 -33.265 -26.789 27.583 1.00 0.00 N ATOM 106 CA GLY 27 -32.086 -27.560 27.210 1.00 0.00 C ATOM 107 C GLY 27 -31.132 -26.712 26.372 1.00 0.00 C ATOM 108 O GLY 27 -29.991 -26.511 26.783 1.00 0.00 O ATOM 109 N ALA 28 -31.607 -26.190 25.239 1.00 0.00 N ATOM 110 CA ALA 28 -30.817 -25.255 24.422 1.00 0.00 C ATOM 111 C ALA 28 -30.192 -24.101 25.273 1.00 0.00 C ATOM 112 O ALA 28 -29.007 -23.777 25.133 1.00 0.00 O ATOM 113 N ILE 29 -30.974 -23.513 26.173 1.00 0.00 N ATOM 114 CA ILE 29 -30.466 -22.438 27.032 1.00 0.00 C ATOM 115 C ILE 29 -31.546 -21.605 27.709 1.00 0.00 C ATOM 116 O ILE 29 -32.630 -22.094 28.026 1.00 0.00 O ATOM 117 N GLY 41 -31.247 -20.336 27.941 1.00 0.00 N ATOM 118 CA GLY 41 -32.209 -19.446 28.564 1.00 0.00 C ATOM 119 C GLY 41 -32.752 -18.501 27.505 1.00 0.00 C ATOM 120 O GLY 41 -31.995 -17.726 26.896 1.00 0.00 O ATOM 121 N LYS 42 -34.056 -18.575 27.275 1.00 0.00 N ATOM 122 CA LYS 42 -34.656 -17.795 26.204 1.00 0.00 C ATOM 123 C LYS 42 -35.739 -16.877 26.740 1.00 0.00 C ATOM 124 O LYS 42 -36.362 -17.184 27.749 1.00 0.00 O ATOM 125 N PRO 43 -35.951 -15.754 26.066 1.00 0.00 N ATOM 126 CA PRO 43 -37.041 -14.840 26.375 1.00 0.00 C ATOM 127 C PRO 43 -38.360 -15.317 25.738 1.00 0.00 C ATOM 128 O PRO 43 -38.386 -15.792 24.594 1.00 0.00 O ATOM 129 N VAL 44 -39.457 -15.203 26.478 1.00 0.00 N ATOM 130 CA VAL 44 -40.754 -15.536 25.931 1.00 0.00 C ATOM 131 C VAL 44 -41.501 -14.255 25.726 1.00 0.00 C ATOM 132 O VAL 44 -42.067 -13.709 26.662 1.00 0.00 O ATOM 133 N MET 45 -41.529 -13.765 24.496 1.00 0.00 N ATOM 134 CA MET 45 -42.211 -12.501 24.275 1.00 0.00 C ATOM 135 C MET 45 -43.732 -12.615 24.403 1.00 0.00 C ATOM 136 O MET 45 -44.309 -13.660 24.072 1.00 0.00 O ATOM 137 N PRO 46 -44.380 -11.539 24.886 1.00 0.00 N ATOM 138 CA PRO 46 -45.846 -11.438 24.825 1.00 0.00 C ATOM 139 C PRO 46 -46.352 -11.748 23.416 1.00 0.00 C ATOM 140 O PRO 46 -45.780 -11.268 22.433 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 96 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 94.90 36.4 44 64.7 68 ARMSMC SECONDARY STRUCTURE . . 119.66 9.5 21 61.8 34 ARMSMC SURFACE . . . . . . . . 97.39 38.9 36 64.3 56 ARMSMC BURIED . . . . . . . . 82.81 25.0 8 66.7 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 29 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 17 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 27 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 21 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 13 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 2 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 2 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.94 (Number of atoms: 24) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.94 24 68.6 35 CRMSCA CRN = ALL/NP . . . . . 0.3724 CRMSCA SECONDARY STRUCTURE . . 7.25 11 64.7 17 CRMSCA SURFACE . . . . . . . . 9.32 20 69.0 29 CRMSCA BURIED . . . . . . . . 6.73 4 66.7 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.97 96 55.5 173 CRMSMC SECONDARY STRUCTURE . . 7.23 44 51.8 85 CRMSMC SURFACE . . . . . . . . 9.21 80 55.9 143 CRMSMC BURIED . . . . . . . . 7.67 16 53.3 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 156 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 136 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 84 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 127 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.97 96 32.4 296 CRMSALL SECONDARY STRUCTURE . . 7.23 44 28.9 152 CRMSALL SURFACE . . . . . . . . 9.21 80 32.9 243 CRMSALL BURIED . . . . . . . . 7.67 16 30.2 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.353 1.000 0.500 24 68.6 35 ERRCA SECONDARY STRUCTURE . . 6.767 1.000 0.500 11 64.7 17 ERRCA SURFACE . . . . . . . . 8.755 1.000 0.500 20 69.0 29 ERRCA BURIED . . . . . . . . 6.347 1.000 0.500 4 66.7 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.358 1.000 0.500 96 55.5 173 ERRMC SECONDARY STRUCTURE . . 6.783 1.000 0.500 44 51.8 85 ERRMC SURFACE . . . . . . . . 8.555 1.000 0.500 80 55.9 143 ERRMC BURIED . . . . . . . . 7.374 1.000 0.500 16 53.3 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 156 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 136 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 84 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 127 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.358 1.000 0.500 96 32.4 296 ERRALL SECONDARY STRUCTURE . . 6.783 1.000 0.500 44 28.9 152 ERRALL SURFACE . . . . . . . . 8.555 1.000 0.500 80 32.9 243 ERRALL BURIED . . . . . . . . 7.374 1.000 0.500 16 30.2 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 5 17 24 35 DISTCA CA (P) 0.00 0.00 2.86 14.29 48.57 35 DISTCA CA (RMS) 0.00 0.00 2.59 4.03 7.17 DISTCA ALL (N) 0 0 3 14 71 96 296 DISTALL ALL (P) 0.00 0.00 1.01 4.73 23.99 296 DISTALL ALL (RMS) 0.00 0.00 2.74 3.90 7.15 DISTALL END of the results output