####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 92 ( 368), selected 81 , name T0548AL396_1 # Molecule2: number of CA atoms 95 ( 787), selected 81 , name T0548.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548AL396_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 70 23 - 106 5.00 7.80 LCS_AVERAGE: 66.24 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 39 61 - 102 1.97 9.73 LCS_AVERAGE: 29.64 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 83 - 101 0.90 8.71 LONGEST_CONTINUOUS_SEGMENT: 19 84 - 102 0.91 8.90 LCS_AVERAGE: 13.55 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 81 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 7 7 13 3 6 8 9 9 9 10 13 13 14 15 16 19 20 22 23 24 29 39 43 LCS_GDT F 13 F 13 7 7 13 4 6 8 9 9 9 10 13 13 14 15 16 19 20 22 23 24 29 29 43 LCS_GDT H 14 H 14 7 7 13 4 6 8 9 9 9 10 13 13 14 15 16 19 22 22 29 33 34 50 52 LCS_GDT Y 15 Y 15 7 7 13 4 6 8 9 9 9 10 13 13 21 24 38 39 56 59 60 67 67 69 71 LCS_GDT T 16 T 16 7 7 13 4 6 8 9 9 9 10 13 13 14 15 17 25 42 46 59 67 67 69 71 LCS_GDT V 17 V 17 7 7 13 3 6 8 9 9 9 10 13 13 16 18 25 35 45 51 59 67 67 69 71 LCS_GDT T 18 T 18 7 7 13 3 4 8 8 9 9 10 13 13 15 18 20 20 26 27 31 38 45 51 59 LCS_GDT D 19 D 19 3 5 13 3 3 4 4 4 4 5 6 8 8 15 16 19 22 27 31 38 48 62 66 LCS_GDT I 20 I 20 3 5 13 3 3 4 4 4 5 6 9 12 12 15 20 24 34 50 58 62 66 68 71 LCS_GDT K 21 K 21 3 5 13 3 6 8 8 9 9 10 13 13 14 17 19 23 26 31 46 57 62 66 71 LCS_GDT D 22 D 22 3 5 67 3 3 4 4 5 5 10 13 13 15 22 31 45 53 61 62 66 67 69 71 LCS_GDT L 23 L 23 3 3 70 3 3 4 4 5 14 20 27 31 38 48 55 58 60 63 65 67 67 69 71 LCS_GDT T 24 T 24 3 3 70 0 3 3 4 5 5 11 19 26 36 43 52 58 60 63 65 67 67 69 71 LCS_GDT K 25 K 25 4 4 70 1 4 4 6 6 6 7 9 13 16 18 20 42 48 60 63 67 67 69 71 LCS_GDT L 26 L 26 4 4 70 3 4 4 6 6 7 17 23 31 41 49 55 59 60 63 65 67 67 69 71 LCS_GDT G 27 G 27 4 4 70 3 4 4 6 7 8 15 19 26 35 44 51 57 60 63 65 67 67 69 71 LCS_GDT A 28 A 28 4 4 70 3 4 4 6 6 7 11 13 15 20 22 29 37 45 55 61 67 67 69 71 LCS_GDT I 29 I 29 3 3 70 0 3 3 4 5 7 8 11 15 20 22 26 35 39 55 61 67 67 69 71 LCS_GDT G 41 G 41 10 15 70 4 6 10 15 24 41 49 53 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT K 42 K 42 10 29 70 4 9 12 15 27 41 49 54 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT P 43 P 43 10 31 70 4 9 12 13 25 41 49 54 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT V 44 V 44 10 32 70 4 9 18 40 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT M 45 M 45 10 32 70 5 19 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT P 46 P 46 10 32 70 3 13 31 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT D 47 D 47 10 32 70 4 9 31 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT Q 48 Q 48 16 32 70 4 9 12 39 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT F 49 F 49 17 32 70 11 21 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT T 50 T 50 17 32 70 11 18 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT F 51 F 51 17 32 70 11 18 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT E 52 E 52 17 32 70 11 22 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT L 53 L 53 17 32 70 11 22 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT L 54 L 54 17 32 70 11 22 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT D 55 D 55 17 32 70 11 22 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT F 56 F 56 17 32 70 11 22 31 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT L 57 L 57 17 32 70 11 21 31 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT H 58 H 58 17 32 70 11 22 31 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT Q 59 Q 59 17 32 70 11 21 31 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT L 60 L 60 17 32 70 9 18 31 40 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT T 61 T 61 17 39 70 4 21 30 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT H 62 H 62 17 39 70 10 22 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT L 63 L 63 17 39 70 10 22 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT S 64 S 64 17 39 70 10 22 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT F 65 F 65 17 39 70 8 22 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT S 66 S 66 15 39 70 6 14 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT K 67 K 67 15 39 70 6 20 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT M 68 M 68 15 39 70 6 18 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT K 69 K 69 15 39 70 6 14 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT A 70 A 70 15 39 70 6 13 25 36 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT L 71 L 71 15 39 70 6 13 24 36 43 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT L 72 L 72 15 39 70 6 13 21 36 43 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT E 73 E 73 15 39 70 6 13 22 36 44 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT R 74 R 74 15 39 70 6 13 20 28 43 45 52 56 57 59 60 61 61 62 63 65 66 67 69 71 LCS_GDT S 75 S 75 15 39 70 3 7 10 23 34 44 51 56 57 59 60 61 61 62 63 64 66 67 68 71 LCS_GDT Y 79 Y 79 3 39 70 0 9 12 13 24 42 49 54 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT Y 80 Y 80 6 39 70 4 6 12 40 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT M 81 M 81 14 39 70 3 9 26 35 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT L 82 L 82 17 39 70 3 9 17 31 38 45 51 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT N 83 N 83 19 39 70 3 9 20 31 38 45 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT R 84 R 84 19 39 70 9 22 30 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT D 85 D 85 19 39 70 7 22 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT R 86 R 86 19 39 70 9 22 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT T 87 T 87 19 39 70 10 22 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT L 88 L 88 19 39 70 10 22 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT K 89 K 89 19 39 70 10 22 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT N 90 N 90 19 39 70 10 22 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT I 91 I 91 19 39 70 10 22 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT T 92 T 92 19 39 70 8 22 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT E 93 E 93 19 39 70 6 21 31 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT T 94 T 94 19 39 70 6 21 31 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT C 95 C 95 19 39 70 10 22 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT K 96 K 96 19 39 70 10 22 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT A 97 A 97 19 39 70 10 22 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT C 98 C 98 19 39 70 10 22 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT A 99 A 99 19 39 70 9 22 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT Q 100 Q 100 19 39 70 7 22 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT V 101 V 101 19 39 70 10 22 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT N 102 N 102 19 39 70 3 14 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 LCS_GDT A 103 A 103 3 25 70 3 3 4 24 35 48 52 56 57 59 60 61 61 62 63 65 66 67 68 71 LCS_GDT S 104 S 104 3 12 70 3 3 4 8 15 32 39 50 53 57 60 61 61 62 63 65 66 67 68 71 LCS_GDT K 105 K 105 3 5 70 3 3 4 8 11 15 34 40 51 53 57 60 61 62 63 65 66 67 68 71 LCS_GDT S 106 S 106 3 5 70 0 3 4 6 10 12 21 26 44 48 53 55 59 62 63 65 66 67 68 71 LCS_AVERAGE LCS_A: 36.48 ( 13.55 29.64 66.24 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 22 32 42 46 50 52 56 57 59 60 61 61 62 63 65 67 67 69 71 GDT PERCENT_AT 11.58 23.16 33.68 44.21 48.42 52.63 54.74 58.95 60.00 62.11 63.16 64.21 64.21 65.26 66.32 68.42 70.53 70.53 72.63 74.74 GDT RMS_LOCAL 0.25 0.60 1.00 1.27 1.40 1.64 1.80 2.11 2.17 2.33 2.47 2.59 2.59 2.74 2.95 3.88 5.26 4.22 5.44 5.14 GDT RMS_ALL_AT 11.34 8.79 9.23 9.16 9.09 9.19 9.28 9.37 9.33 9.15 9.13 8.99 8.99 9.00 8.98 8.26 7.55 8.14 7.53 7.73 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 24.354 6 0.648 0.648 24.718 0.000 0.000 LGA F 13 F 13 19.439 7 0.044 0.044 20.652 0.000 0.000 LGA H 14 H 14 19.806 6 0.018 0.018 19.881 0.000 0.000 LGA Y 15 Y 15 15.456 8 0.167 0.167 17.097 0.000 0.000 LGA T 16 T 16 19.531 3 0.058 0.058 19.531 0.000 0.000 LGA V 17 V 17 21.040 3 0.587 0.587 23.055 0.000 0.000 LGA T 18 T 18 24.110 3 0.594 0.594 24.110 0.000 0.000 LGA D 19 D 19 21.240 4 0.421 0.421 22.363 0.000 0.000 LGA I 20 I 20 18.729 4 0.282 0.282 19.598 0.000 0.000 LGA K 21 K 21 20.141 5 0.598 0.598 20.238 0.000 0.000 LGA D 22 D 22 16.089 4 0.641 0.641 17.046 0.000 0.000 LGA L 23 L 23 14.126 4 0.568 0.568 14.766 0.000 0.000 LGA T 24 T 24 15.804 3 0.607 0.607 18.125 0.000 0.000 LGA K 25 K 25 19.402 5 0.651 0.651 19.402 0.000 0.000 LGA L 26 L 26 15.223 4 0.662 0.662 17.018 0.000 0.000 LGA G 27 G 27 17.243 0 0.394 0.394 18.038 0.000 0.000 LGA A 28 A 28 17.949 1 0.600 0.600 21.493 0.000 0.000 LGA I 29 I 29 18.779 4 0.213 0.213 18.779 0.000 0.000 LGA G 41 G 41 7.403 0 0.539 0.539 8.869 8.333 8.333 LGA K 42 K 42 5.640 5 0.016 0.016 5.983 23.810 10.582 LGA P 43 P 43 5.482 3 0.050 0.050 5.750 30.476 17.415 LGA V 44 V 44 3.027 3 0.130 0.130 3.991 57.738 32.993 LGA M 45 M 45 1.569 4 0.102 0.102 2.072 75.119 37.560 LGA P 46 P 46 2.055 3 0.117 0.117 2.055 68.810 39.320 LGA D 47 D 47 1.962 4 0.042 0.042 2.006 70.833 35.417 LGA Q 48 Q 48 2.325 5 0.170 0.170 2.325 66.786 29.683 LGA F 49 F 49 0.546 7 0.175 0.175 0.695 90.476 32.900 LGA T 50 T 50 1.112 3 0.031 0.031 1.112 83.690 47.823 LGA F 51 F 51 1.128 7 0.023 0.023 1.168 85.952 31.255 LGA E 52 E 52 1.121 5 0.026 0.026 1.286 85.952 38.201 LGA L 53 L 53 1.239 4 0.027 0.027 1.618 81.548 40.774 LGA L 54 L 54 1.065 4 0.033 0.033 1.065 85.952 42.976 LGA D 55 D 55 1.254 4 0.047 0.047 1.720 79.405 39.702 LGA F 56 F 56 2.380 7 0.033 0.033 2.728 64.881 23.593 LGA L 57 L 57 2.392 4 0.112 0.112 2.392 64.762 32.381 LGA H 58 H 58 1.639 6 0.025 0.025 2.109 70.833 28.333 LGA Q 59 Q 59 2.531 5 0.129 0.129 2.758 59.048 26.243 LGA L 60 L 60 3.256 4 0.166 0.166 3.256 61.190 30.595 LGA T 61 T 61 2.118 3 0.259 0.259 2.427 68.810 39.320 LGA H 62 H 62 0.757 6 0.113 0.113 1.246 88.214 35.286 LGA L 63 L 63 1.022 4 0.020 0.020 1.022 88.214 44.107 LGA S 64 S 64 0.939 2 0.095 0.095 1.010 88.214 58.810 LGA F 65 F 65 0.820 7 0.039 0.039 0.938 95.238 34.632 LGA S 66 S 66 1.204 2 0.061 0.061 1.793 81.548 54.365 LGA K 67 K 67 0.570 5 0.094 0.094 1.642 86.071 38.254 LGA M 68 M 68 1.339 4 0.006 0.006 1.970 81.548 40.774 LGA K 69 K 69 1.357 5 0.060 0.060 2.037 75.119 33.386 LGA A 70 A 70 2.283 1 0.043 0.043 2.721 62.976 50.381 LGA L 71 L 71 2.875 4 0.101 0.101 2.888 57.143 28.571 LGA L 72 L 72 2.891 4 0.048 0.048 3.302 55.357 27.679 LGA E 73 E 73 2.765 5 0.024 0.024 3.512 51.905 23.069 LGA R 74 R 74 4.096 7 0.128 0.128 4.580 38.929 14.156 LGA S 75 S 75 4.532 2 0.115 0.115 5.382 30.238 20.159 LGA Y 79 Y 79 4.369 8 0.082 0.082 4.853 38.810 12.937 LGA Y 80 Y 80 2.789 8 0.166 0.166 3.340 63.214 21.071 LGA M 81 M 81 2.923 4 0.241 0.241 3.110 57.262 28.631 LGA L 82 L 82 4.497 4 0.011 0.011 4.497 37.143 18.571 LGA N 83 N 83 4.114 4 0.116 0.116 4.197 45.357 22.679 LGA R 84 R 84 2.062 7 0.098 0.098 2.804 69.048 25.108 LGA D 85 D 85 1.555 4 0.026 0.026 1.794 79.405 39.702 LGA R 86 R 86 0.974 7 0.016 0.016 1.280 90.595 32.944 LGA T 87 T 87 0.768 3 0.054 0.054 0.814 92.857 53.061 LGA L 88 L 88 0.670 4 0.020 0.020 0.791 90.476 45.238 LGA K 89 K 89 0.763 5 0.104 0.104 1.063 88.214 39.206 LGA N 90 N 90 0.643 4 0.034 0.034 1.125 90.595 45.298 LGA I 91 I 91 0.304 4 0.031 0.031 0.867 95.238 47.619 LGA T 92 T 92 1.081 3 0.096 0.096 1.334 83.690 47.823 LGA E 93 E 93 2.274 5 0.022 0.022 2.723 64.881 28.836 LGA T 94 T 94 2.195 3 0.025 0.025 2.195 68.810 39.320 LGA C 95 C 95 1.111 2 0.058 0.058 1.376 81.429 54.286 LGA K 96 K 96 1.385 5 0.102 0.102 1.385 85.952 38.201 LGA A 97 A 97 0.549 1 0.047 0.047 0.722 90.476 72.381 LGA C 98 C 98 0.629 2 0.089 0.089 0.957 90.476 60.317 LGA A 99 A 99 0.842 1 0.037 0.037 1.195 85.952 68.762 LGA Q 100 Q 100 1.518 5 0.218 0.218 1.926 75.000 33.333 LGA V 101 V 101 1.521 3 0.171 0.171 1.579 77.143 44.082 LGA N 102 N 102 1.255 4 0.659 0.659 1.686 81.548 40.774 LGA A 103 A 103 4.400 1 0.671 0.671 6.975 31.667 25.333 LGA S 104 S 104 7.040 2 0.398 0.398 7.158 16.190 10.794 LGA K 105 K 105 8.151 5 0.490 0.490 11.316 3.095 1.376 LGA S 106 S 106 10.582 2 0.564 0.564 10.582 2.262 1.508 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 81 324 324 100.00 656 324 49.39 95 SUMMARY(RMSD_GDC): 7.453 7.388 7.388 44.652 22.823 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 92 95 4.0 56 2.11 48.684 46.067 2.536 LGA_LOCAL RMSD: 2.108 Number of atoms: 56 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.373 Number of assigned atoms: 81 Std_ASGN_ATOMS RMSD: 7.453 Standard rmsd on all 81 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.713301 * X + -0.187385 * Y + 0.675343 * Z + 59.391357 Y_new = -0.610374 * X + 0.307487 * Y + 0.729997 * Z + -29.553932 Z_new = -0.344449 * X + -0.932920 * Y + 0.104956 * Z + 29.015705 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.707795 0.351652 -1.458765 [DEG: -40.5537 20.1482 -83.5811 ] ZXZ: 2.395065 1.465647 -2.787902 [DEG: 137.2271 83.9754 -159.7350 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548AL396_1 REMARK 2: T0548.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548AL396_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 92 95 4.0 56 2.11 46.067 7.45 REMARK ---------------------------------------------------------- MOLECULE T0548AL396_1 REMARK Aligment from pdb entry: 3l2t_A ATOM 1 N MET 1 -48.892 -20.428 27.675 1.00 0.00 ATOM 2 CA MET 1 -49.958 -21.388 27.370 1.00 0.00 ATOM 3 C MET 1 -51.307 -20.825 27.813 1.00 0.00 ATOM 4 O MET 1 -52.327 -21.027 27.151 1.00 0.00 ATOM 5 N ILE 2 -51.278 -20.094 28.929 1.00 0.00 ATOM 6 CA ILE 2 -52.427 -19.349 29.438 1.00 0.00 ATOM 7 C ILE 2 -52.851 -18.196 28.508 1.00 0.00 ATOM 8 O ILE 2 -53.798 -17.465 28.808 1.00 0.00 ATOM 9 N GLU 3 -52.142 -18.035 27.392 1.00 0.00 ATOM 10 CA GLU 3 -52.520 -17.078 26.355 1.00 0.00 ATOM 11 C GLU 3 -52.014 -15.650 26.492 1.00 0.00 ATOM 12 O GLU 3 -52.091 -14.888 25.532 1.00 0.00 ATOM 13 N ASN 4 -51.513 -15.285 27.675 1.00 0.00 ATOM 14 CA ASN 4 -50.940 -13.951 27.925 1.00 0.00 ATOM 15 C ASN 4 -49.720 -13.632 27.031 1.00 0.00 ATOM 16 O ASN 4 -48.959 -14.542 26.653 1.00 0.00 ATOM 17 N SER 5 -49.524 -12.350 26.710 1.00 0.00 ATOM 18 CA SER 5 -48.390 -11.914 25.873 1.00 0.00 ATOM 19 C SER 5 -47.096 -11.720 26.673 1.00 0.00 ATOM 20 O SER 5 -47.147 -11.256 27.815 1.00 0.00 ATOM 21 N SER 6 -45.946 -12.052 26.067 1.00 0.00 ATOM 22 CA SER 6 -44.621 -11.718 26.640 1.00 0.00 ATOM 23 C SER 6 -43.669 -11.109 25.600 1.00 0.00 ATOM 24 O SER 6 -43.685 -11.543 24.454 1.00 0.00 ATOM 25 N PRO 7 -42.865 -10.112 26.001 1.00 0.00 ATOM 26 CA PRO 7 -41.836 -9.510 25.123 1.00 0.00 ATOM 27 C PRO 7 -40.960 -10.617 24.529 1.00 0.00 ATOM 28 O PRO 7 -40.618 -11.569 25.230 1.00 0.00 ATOM 29 N TYR 8 -40.595 -10.479 23.248 1.00 0.00 ATOM 30 CA TYR 8 -40.167 -11.616 22.423 1.00 0.00 ATOM 31 C TYR 8 -41.452 -12.342 22.062 1.00 0.00 ATOM 32 O TYR 8 -42.489 -11.704 21.868 1.00 0.00 ATOM 33 N THR 9 -41.402 -13.666 21.979 1.00 0.00 ATOM 34 CA THR 9 -42.612 -14.501 21.877 1.00 0.00 ATOM 35 C THR 9 -43.788 -13.904 21.112 1.00 0.00 ATOM 36 O THR 9 -44.824 -13.624 21.712 1.00 0.00 ATOM 37 N SER 10 -43.644 -13.727 19.784 1.00 0.00 ATOM 38 CA SER 10 -44.749 -13.184 19.002 1.00 0.00 ATOM 39 C SER 10 -46.018 -13.980 19.216 1.00 0.00 ATOM 40 O SER 10 -45.957 -15.206 19.296 1.00 0.00 ATOM 41 N GLU 11 -47.154 -13.297 19.328 1.00 0.00 ATOM 42 CA GLU 11 -48.445 -13.976 19.239 1.00 0.00 ATOM 43 C GLU 11 -48.755 -14.188 17.753 1.00 0.00 ATOM 44 O GLU 11 -48.009 -13.706 16.898 1.00 0.00 ATOM 45 N HIS 12 -49.841 -14.903 17.455 1.00 0.00 ATOM 46 CA HIS 12 -50.156 -15.415 16.101 1.00 0.00 ATOM 47 C HIS 12 -49.609 -16.834 15.985 1.00 0.00 ATOM 48 O HIS 12 -49.963 -17.581 15.069 1.00 0.00 ATOM 49 N PHE 13 -48.740 -17.186 16.927 1.00 0.00 ATOM 50 CA PHE 13 -48.144 -18.505 16.982 1.00 0.00 ATOM 51 C PHE 13 -48.732 -19.257 18.148 1.00 0.00 ATOM 52 O PHE 13 -48.761 -18.736 19.258 1.00 0.00 ATOM 53 N HIS 14 -49.222 -20.468 17.897 1.00 0.00 ATOM 54 CA HIS 14 -49.797 -21.272 18.988 1.00 0.00 ATOM 55 C HIS 14 -48.703 -21.994 19.785 1.00 0.00 ATOM 56 O HIS 14 -47.865 -22.718 19.225 1.00 0.00 ATOM 57 N TYR 15 -48.713 -21.735 21.092 1.00 0.00 ATOM 58 CA TYR 15 -47.799 -22.338 22.046 1.00 0.00 ATOM 59 C TYR 15 -48.557 -23.400 22.829 1.00 0.00 ATOM 60 O TYR 15 -49.393 -23.087 23.673 1.00 0.00 ATOM 61 N THR 16 -48.274 -24.660 22.554 1.00 0.00 ATOM 62 CA THR 16 -48.976 -25.727 23.240 1.00 0.00 ATOM 63 C THR 16 -48.049 -26.559 24.123 1.00 0.00 ATOM 64 O THR 16 -46.872 -26.226 24.279 1.00 0.00 ATOM 65 N VAL 17 -48.595 -27.623 24.710 1.00 0.00 ATOM 66 CA VAL 17 -47.843 -28.491 25.604 1.00 0.00 ATOM 67 C VAL 17 -47.875 -29.931 25.116 1.00 0.00 ATOM 68 O VAL 17 -48.920 -30.421 24.697 1.00 0.00 ATOM 69 N THR 18 -46.715 -30.587 25.166 1.00 0.00 ATOM 70 CA THR 18 -46.546 -32.008 24.817 1.00 0.00 ATOM 71 C THR 18 -45.346 -32.592 25.549 1.00 0.00 ATOM 72 O THR 18 -44.277 -31.983 25.561 1.00 0.00 ATOM 73 N ASP 19 -45.519 -33.767 26.151 1.00 0.00 ATOM 74 CA ASP 19 -44.427 -34.456 26.856 1.00 0.00 ATOM 75 C ASP 19 -43.798 -33.597 27.949 1.00 0.00 ATOM 76 O ASP 19 -42.589 -33.667 28.188 1.00 0.00 ATOM 77 N ILE 20 -44.610 -32.769 28.595 1.00 0.00 ATOM 78 CA ILE 20 -44.108 -31.872 29.633 1.00 0.00 ATOM 79 C ILE 20 -43.108 -30.824 29.159 1.00 0.00 ATOM 80 O ILE 20 -42.441 -30.202 29.981 1.00 0.00 ATOM 81 N LYS 21 -42.992 -30.637 27.841 1.00 0.00 ATOM 82 CA LYS 21 -42.179 -29.550 27.255 1.00 0.00 ATOM 83 C LYS 21 -43.095 -28.535 26.549 1.00 0.00 ATOM 84 O LYS 21 -44.104 -28.910 25.952 1.00 0.00 ATOM 85 N ASP 22 -42.745 -27.258 26.613 1.00 0.00 ATOM 86 CA ASP 22 -43.553 -26.227 25.978 1.00 0.00 ATOM 87 C ASP 22 -43.137 -26.116 24.525 1.00 0.00 ATOM 88 O ASP 22 -41.955 -25.957 24.237 1.00 0.00 ATOM 89 N LEU 23 -44.088 -26.198 23.604 1.00 0.00 ATOM 90 CA LEU 23 -43.737 -26.223 22.183 1.00 0.00 ATOM 91 C LEU 23 -44.395 -25.111 21.415 1.00 0.00 ATOM 92 O LEU 23 -45.390 -24.551 21.854 1.00 0.00 ATOM 93 N THR 24 -43.829 -24.800 20.256 1.00 0.00 ATOM 94 CA THR 24 -44.438 -23.845 19.341 1.00 0.00 ATOM 95 C THR 24 -44.413 -24.330 17.890 1.00 0.00 ATOM 96 O THR 24 -43.453 -24.964 17.439 1.00 0.00 ATOM 97 N LYS 25 -45.507 -24.046 17.194 1.00 0.00 ATOM 98 CA LYS 25 -45.654 -24.329 15.779 1.00 0.00 ATOM 99 C LYS 25 -45.128 -23.127 15.006 1.00 0.00 ATOM 100 O LYS 25 -45.524 -21.991 15.283 1.00 0.00 ATOM 101 N LEU 26 -44.231 -23.372 14.053 1.00 0.00 ATOM 102 CA LEU 26 -43.537 -22.291 13.342 1.00 0.00 ATOM 103 C LEU 26 -43.371 -22.593 11.853 1.00 0.00 ATOM 104 O LEU 26 -43.369 -23.757 11.459 1.00 0.00 ATOM 105 N GLY 27 -43.244 -21.544 11.014 1.00 0.00 ATOM 106 CA GLY 27 -43.058 -21.806 9.593 1.00 0.00 ATOM 107 C GLY 27 -42.058 -22.939 9.382 1.00 0.00 ATOM 108 O GLY 27 -42.419 -23.956 8.792 1.00 0.00 ATOM 109 N ALA 28 -40.834 -22.784 9.892 1.00 0.00 ATOM 110 CA ALA 28 -39.833 -23.863 9.859 1.00 0.00 ATOM 111 C ALA 28 -40.410 -25.225 10.366 1.00 0.00 ATOM 112 O ALA 28 -40.208 -26.273 9.742 1.00 0.00 ATOM 113 N ILE 29 -41.152 -25.202 11.469 1.00 0.00 ATOM 114 CA ILE 29 -41.753 -26.429 12.004 1.00 0.00 ATOM 115 C ILE 29 -42.221 -26.326 13.450 1.00 0.00 ATOM 116 O ILE 29 -42.634 -25.264 13.917 1.00 0.00 ATOM 117 N GLY 41 -42.167 -27.440 14.163 1.00 0.00 ATOM 118 CA GLY 41 -42.570 -27.452 15.557 1.00 0.00 ATOM 119 C GLY 41 -41.324 -27.546 16.422 1.00 0.00 ATOM 120 O GLY 41 -40.562 -28.524 16.335 1.00 0.00 ATOM 121 N LYS 42 -41.109 -26.527 17.243 1.00 0.00 ATOM 122 CA LYS 42 -39.888 -26.467 18.031 1.00 0.00 ATOM 123 C LYS 42 -40.200 -26.398 19.515 1.00 0.00 ATOM 124 O LYS 42 -41.249 -25.895 19.900 1.00 0.00 ATOM 125 N PRO 43 -39.291 -26.909 20.335 1.00 0.00 ATOM 126 CA PRO 43 -39.383 -26.798 21.784 1.00 0.00 ATOM 127 C PRO 43 -38.861 -25.432 22.268 1.00 0.00 ATOM 128 O PRO 43 -37.851 -24.917 21.768 1.00 0.00 ATOM 129 N VAL 44 -39.551 -24.837 23.234 1.00 0.00 ATOM 130 CA VAL 44 -39.085 -23.598 23.817 1.00 0.00 ATOM 131 C VAL 44 -38.595 -23.905 25.199 1.00 0.00 ATOM 132 O VAL 44 -39.383 -24.013 26.127 1.00 0.00 ATOM 133 N MET 45 -37.287 -24.032 25.359 1.00 0.00 ATOM 134 CA MET 45 -36.786 -24.372 26.681 1.00 0.00 ATOM 135 C MET 45 -36.928 -23.225 27.683 1.00 0.00 ATOM 136 O MET 45 -36.834 -22.049 27.304 1.00 0.00 ATOM 137 N PRO 46 -37.155 -23.566 28.965 1.00 0.00 ATOM 138 CA PRO 46 -37.065 -22.576 30.049 1.00 0.00 ATOM 139 C PRO 46 -35.758 -21.790 29.956 1.00 0.00 ATOM 140 O PRO 46 -34.696 -22.377 29.731 1.00 0.00 ATOM 141 N ASP 47 -35.838 -20.475 30.123 1.00 0.00 ATOM 142 CA ASP 47 -34.654 -19.615 30.155 1.00 0.00 ATOM 143 C ASP 47 -33.491 -20.256 30.912 1.00 0.00 ATOM 144 O ASP 47 -32.362 -20.233 30.441 1.00 0.00 ATOM 145 N GLN 48 -33.769 -20.844 32.075 1.00 0.00 ATOM 146 CA GLN 48 -32.704 -21.393 32.921 1.00 0.00 ATOM 147 C GLN 48 -31.915 -22.535 32.255 1.00 0.00 ATOM 148 O GLN 48 -30.891 -22.963 32.765 1.00 0.00 ATOM 149 N PHE 49 -32.395 -23.012 31.113 1.00 0.00 ATOM 150 CA PHE 49 -31.789 -24.153 30.437 1.00 0.00 ATOM 151 C PHE 49 -30.968 -23.784 29.201 1.00 0.00 ATOM 152 O PHE 49 -30.154 -24.569 28.720 1.00 0.00 ATOM 153 N THR 50 -31.202 -22.584 28.692 1.00 0.00 ATOM 154 CA THR 50 -30.731 -22.180 27.390 1.00 0.00 ATOM 155 C THR 50 -29.212 -22.071 27.292 1.00 0.00 ATOM 156 O THR 50 -28.617 -22.480 26.296 1.00 0.00 ATOM 157 N PHE 51 -28.578 -21.530 28.324 1.00 0.00 ATOM 158 CA PHE 51 -27.135 -21.425 28.307 1.00 0.00 ATOM 159 C PHE 51 -26.532 -22.823 28.193 1.00 0.00 ATOM 160 O PHE 51 -25.663 -23.044 27.376 1.00 0.00 ATOM 161 N GLU 52 -27.019 -23.763 28.999 1.00 0.00 ATOM 162 CA GLU 52 -26.587 -25.179 28.949 1.00 0.00 ATOM 163 C GLU 52 -26.805 -25.746 27.550 1.00 0.00 ATOM 164 O GLU 52 -25.956 -26.470 27.047 1.00 0.00 ATOM 165 N LEU 53 -27.931 -25.397 26.925 1.00 0.00 ATOM 166 CA LEU 53 -28.249 -25.850 25.568 1.00 0.00 ATOM 167 C LEU 53 -27.264 -25.309 24.531 1.00 0.00 ATOM 168 O LEU 53 -26.708 -26.092 23.743 1.00 0.00 ATOM 169 N LEU 54 -27.037 -23.995 24.555 1.00 0.00 ATOM 170 CA LEU 54 -26.167 -23.320 23.592 1.00 0.00 ATOM 171 C LEU 54 -24.758 -23.894 23.693 1.00 0.00 ATOM 172 O LEU 54 -24.065 -24.065 22.696 1.00 0.00 ATOM 173 N ASP 55 -24.357 -24.220 24.911 1.00 0.00 ATOM 174 CA ASP 55 -23.040 -24.725 25.159 1.00 0.00 ATOM 175 C ASP 55 -22.890 -26.093 24.557 1.00 0.00 ATOM 176 O ASP 55 -21.843 -26.426 24.020 1.00 0.00 ATOM 177 N PHE 56 -23.942 -26.894 24.661 1.00 0.00 ATOM 178 CA PHE 56 -23.891 -28.275 24.201 1.00 0.00 ATOM 179 C PHE 56 -23.714 -28.284 22.704 1.00 0.00 ATOM 180 O PHE 56 -22.880 -29.045 22.176 1.00 0.00 ATOM 181 N LEU 57 -24.493 -27.423 22.043 1.00 0.00 ATOM 182 CA LEU 57 -24.468 -27.321 20.596 1.00 0.00 ATOM 183 C LEU 57 -23.093 -26.867 20.219 1.00 0.00 ATOM 184 O LEU 57 -22.402 -27.549 19.479 1.00 0.00 ATOM 185 N HIS 58 -22.666 -25.745 20.778 1.00 0.00 ATOM 186 CA HIS 58 -21.350 -25.224 20.473 1.00 0.00 ATOM 187 C HIS 58 -20.215 -26.235 20.664 1.00 0.00 ATOM 188 O HIS 58 -19.295 -26.313 19.847 1.00 0.00 ATOM 189 N GLN 59 -20.261 -27.013 21.725 1.00 0.00 ATOM 190 CA GLN 59 -19.110 -27.840 22.017 1.00 0.00 ATOM 191 C GLN 59 -18.940 -29.046 21.104 1.00 0.00 ATOM 192 O GLN 59 -17.862 -29.684 21.122 1.00 0.00 ATOM 193 N LEU 60 -19.983 -29.371 20.316 1.00 0.00 ATOM 194 CA LEU 60 -19.913 -30.550 19.432 1.00 0.00 ATOM 195 C LEU 60 -18.697 -30.432 18.558 1.00 0.00 ATOM 196 O LEU 60 -17.910 -31.358 18.512 1.00 0.00 ATOM 197 N THR 61 -18.510 -29.272 17.927 1.00 0.00 ATOM 198 CA THR 61 -17.286 -29.014 17.167 1.00 0.00 ATOM 199 C THR 61 -16.739 -27.595 17.315 1.00 0.00 ATOM 200 O THR 61 -15.984 -27.136 16.456 1.00 0.00 ATOM 201 N HIS 62 -17.120 -26.901 18.390 1.00 0.00 ATOM 202 CA HIS 62 -16.686 -25.513 18.632 1.00 0.00 ATOM 203 C HIS 62 -16.913 -24.652 17.412 1.00 0.00 ATOM 204 O HIS 62 -16.001 -23.941 16.943 1.00 0.00 ATOM 205 N LEU 63 -18.144 -24.752 16.904 1.00 0.00 ATOM 206 CA LEU 63 -18.596 -23.982 15.751 1.00 0.00 ATOM 207 C LEU 63 -18.875 -22.519 16.096 1.00 0.00 ATOM 208 O LEU 63 -19.243 -22.177 17.240 1.00 0.00 ATOM 209 N SER 64 -18.694 -21.671 15.088 1.00 0.00 ATOM 210 CA SER 64 -19.016 -20.242 15.163 1.00 0.00 ATOM 211 C SER 64 -20.507 -19.946 15.243 1.00 0.00 ATOM 212 O SER 64 -21.298 -20.816 15.611 1.00 0.00 ATOM 213 N PHE 65 -20.902 -18.724 14.887 1.00 0.00 ATOM 214 CA PHE 65 -22.278 -18.281 15.139 1.00 0.00 ATOM 215 C PHE 65 -23.300 -19.118 14.389 1.00 0.00 ATOM 216 O PHE 65 -24.067 -19.838 15.012 1.00 0.00 ATOM 217 N SER 66 -23.291 -19.042 13.059 1.00 0.00 ATOM 218 CA SER 66 -24.334 -19.674 12.263 1.00 0.00 ATOM 219 C SER 66 -24.323 -21.202 12.379 1.00 0.00 ATOM 220 O SER 66 -25.376 -21.848 12.554 1.00 0.00 ATOM 221 N LYS 67 -23.139 -21.788 12.327 1.00 0.00 ATOM 222 CA LYS 67 -23.092 -23.237 12.426 1.00 0.00 ATOM 223 C LYS 67 -23.601 -23.729 13.793 1.00 0.00 ATOM 224 O LYS 67 -24.191 -24.811 13.884 1.00 0.00 ATOM 225 N MET 68 -23.414 -22.934 14.842 1.00 0.00 ATOM 226 CA MET 68 -23.961 -23.297 16.154 1.00 0.00 ATOM 227 C MET 68 -25.467 -23.094 16.176 1.00 0.00 ATOM 228 O MET 68 -26.219 -23.971 16.607 1.00 0.00 ATOM 229 N LYS 69 -25.910 -21.936 15.712 1.00 0.00 ATOM 230 CA LYS 69 -27.332 -21.693 15.662 1.00 0.00 ATOM 231 C LYS 69 -28.084 -22.774 14.834 1.00 0.00 ATOM 232 O LYS 69 -29.149 -23.243 15.238 1.00 0.00 ATOM 233 N ALA 70 -27.523 -23.175 13.694 1.00 0.00 ATOM 234 CA ALA 70 -28.173 -24.200 12.866 1.00 0.00 ATOM 235 C ALA 70 -28.462 -25.517 13.572 1.00 0.00 ATOM 236 O ALA 70 -29.476 -26.148 13.278 1.00 0.00 ATOM 237 N LEU 71 -27.589 -25.932 14.494 1.00 0.00 ATOM 238 CA LEU 71 -27.872 -27.125 15.271 1.00 0.00 ATOM 239 C LEU 71 -29.031 -26.812 16.168 1.00 0.00 ATOM 240 O LEU 71 -30.043 -27.498 16.139 1.00 0.00 ATOM 241 N LEU 72 -28.895 -25.757 16.958 1.00 0.00 ATOM 242 CA LEU 72 -29.892 -25.434 17.976 1.00 0.00 ATOM 243 C LEU 72 -31.266 -25.320 17.326 1.00 0.00 ATOM 244 O LEU 72 -32.254 -25.836 17.848 1.00 0.00 ATOM 245 N GLU 73 -31.310 -24.687 16.159 1.00 0.00 ATOM 246 CA GLU 73 -32.556 -24.487 15.442 1.00 0.00 ATOM 247 C GLU 73 -33.240 -25.808 15.100 1.00 0.00 ATOM 248 O GLU 73 -34.462 -25.876 15.093 1.00 0.00 ATOM 249 N ARG 74 -32.478 -26.856 14.822 1.00 0.00 ATOM 250 CA ARG 74 -33.114 -28.154 14.639 1.00 0.00 ATOM 251 C ARG 74 -34.158 -28.504 15.685 1.00 0.00 ATOM 252 O ARG 74 -35.228 -28.991 15.350 1.00 0.00 ATOM 253 N SER 75 -33.848 -28.236 16.946 1.00 0.00 ATOM 254 CA SER 75 -34.706 -28.680 18.022 1.00 0.00 ATOM 255 C SER 75 -35.444 -27.576 18.719 1.00 0.00 ATOM 256 O SER 75 -36.590 -27.787 19.140 1.00 0.00 ATOM 257 N TYR 79 -34.817 -26.414 18.865 1.00 0.00 ATOM 258 CA TYR 79 -35.419 -25.401 19.724 1.00 0.00 ATOM 259 C TYR 79 -35.798 -24.128 19.050 1.00 0.00 ATOM 260 O TYR 79 -35.400 -23.867 17.926 1.00 0.00 ATOM 261 N TYR 80 -36.618 -23.356 19.744 1.00 0.00 ATOM 262 CA TYR 80 -36.787 -21.954 19.414 1.00 0.00 ATOM 263 C TYR 80 -36.906 -21.100 20.677 1.00 0.00 ATOM 264 O TYR 80 -37.415 -21.565 21.695 1.00 0.00 ATOM 265 N MET 81 -36.391 -19.878 20.609 1.00 0.00 ATOM 266 CA MET 81 -36.658 -18.869 21.606 1.00 0.00 ATOM 267 C MET 81 -36.239 -17.493 21.086 1.00 0.00 ATOM 268 O MET 81 -35.479 -17.408 20.107 1.00 0.00 ATOM 269 N LEU 82 -36.729 -16.406 21.717 1.00 0.00 ATOM 270 CA LEU 82 -36.432 -15.058 21.254 1.00 0.00 ATOM 271 C LEU 82 -34.952 -14.788 21.273 1.00 0.00 ATOM 272 O LEU 82 -34.294 -15.049 22.291 1.00 0.00 ATOM 273 N ASN 83 -34.452 -14.290 20.140 1.00 0.00 ATOM 274 CA ASN 83 -33.078 -13.807 19.999 1.00 0.00 ATOM 275 C ASN 83 -32.069 -14.889 20.367 1.00 0.00 ATOM 276 O ASN 83 -31.275 -14.748 21.301 1.00 0.00 ATOM 277 N ARG 84 -32.123 -15.981 19.621 1.00 0.00 ATOM 278 CA ARG 84 -31.219 -17.086 19.805 1.00 0.00 ATOM 279 C ARG 84 -29.779 -16.698 19.579 1.00 0.00 ATOM 280 O ARG 84 -28.903 -17.023 20.386 1.00 0.00 ATOM 281 N ASP 85 -29.507 -15.978 18.503 1.00 0.00 ATOM 282 CA ASP 85 -28.101 -15.660 18.239 1.00 0.00 ATOM 283 C ASP 85 -27.469 -14.840 19.362 1.00 0.00 ATOM 284 O ASP 85 -26.288 -15.039 19.649 1.00 0.00 ATOM 285 N ARG 86 -28.255 -13.976 20.027 1.00 0.00 ATOM 286 CA ARG 86 -27.720 -13.174 21.147 1.00 0.00 ATOM 287 C ARG 86 -27.107 -14.108 22.201 1.00 0.00 ATOM 288 O ARG 86 -25.955 -13.926 22.621 1.00 0.00 ATOM 289 N THR 87 -27.845 -15.143 22.574 1.00 0.00 ATOM 290 CA THR 87 -27.293 -16.153 23.464 1.00 0.00 ATOM 291 C THR 87 -26.141 -16.934 22.833 1.00 0.00 ATOM 292 O THR 87 -25.211 -17.318 23.548 1.00 0.00 ATOM 293 N LEU 88 -26.185 -17.173 21.517 1.00 0.00 ATOM 294 CA LEU 88 -25.096 -17.913 20.882 1.00 0.00 ATOM 295 C LEU 88 -23.825 -17.088 20.964 1.00 0.00 ATOM 296 O LEU 88 -22.752 -17.593 21.280 1.00 0.00 ATOM 297 N LYS 89 -23.954 -15.796 20.713 1.00 0.00 ATOM 298 CA LYS 89 -22.778 -14.937 20.693 1.00 0.00 ATOM 299 C LYS 89 -22.230 -14.783 22.094 1.00 0.00 ATOM 300 O LYS 89 -21.032 -14.704 22.265 1.00 0.00 ATOM 301 N ASN 90 -23.106 -14.760 23.098 1.00 0.00 ATOM 302 CA ASN 90 -22.644 -14.633 24.491 1.00 0.00 ATOM 303 C ASN 90 -21.707 -15.790 24.802 1.00 0.00 ATOM 304 O ASN 90 -20.665 -15.589 25.439 1.00 0.00 ATOM 305 N ILE 91 -22.060 -16.982 24.316 1.00 0.00 ATOM 306 CA ILE 91 -21.216 -18.145 24.493 1.00 0.00 ATOM 307 C ILE 91 -19.888 -18.005 23.798 1.00 0.00 ATOM 308 O ILE 91 -18.844 -18.118 24.446 1.00 0.00 ATOM 309 N THR 92 -19.916 -17.731 22.494 1.00 0.00 ATOM 310 CA THR 92 -18.696 -17.637 21.707 1.00 0.00 ATOM 311 C THR 92 -17.650 -16.708 22.308 1.00 0.00 ATOM 312 O THR 92 -16.461 -16.943 22.125 1.00 0.00 ATOM 313 N GLU 93 -18.075 -15.675 23.032 1.00 0.00 ATOM 314 CA GLU 93 -17.144 -14.733 23.635 1.00 0.00 ATOM 315 C GLU 93 -16.532 -15.249 24.924 1.00 0.00 ATOM 316 O GLU 93 -15.545 -14.693 25.397 1.00 0.00 ATOM 317 N THR 94 -17.120 -16.303 25.489 1.00 0.00 ATOM 318 CA THR 94 -16.619 -16.926 26.724 1.00 0.00 ATOM 319 C THR 94 -15.909 -18.269 26.505 1.00 0.00 ATOM 320 O THR 94 -15.492 -18.907 27.485 1.00 0.00 ATOM 321 N CYS 95 -15.793 -18.721 25.249 1.00 0.00 ATOM 322 CA CYS 95 -15.116 -19.985 24.965 1.00 0.00 ATOM 323 C CYS 95 -13.628 -19.720 24.870 1.00 0.00 ATOM 324 O CYS 95 -13.141 -19.221 23.867 1.00 0.00 ATOM 325 N LYS 96 -12.894 -20.037 25.924 1.00 0.00 ATOM 326 CA LYS 96 -11.463 -19.768 25.907 1.00 0.00 ATOM 327 C LYS 96 -10.828 -20.380 24.640 1.00 0.00 ATOM 328 O LYS 96 -10.079 -19.700 23.945 1.00 0.00 ATOM 329 N ALA 97 -11.183 -21.627 24.312 1.00 0.00 ATOM 330 CA ALA 97 -10.545 -22.353 23.213 1.00 0.00 ATOM 331 C ALA 97 -10.805 -21.760 21.832 1.00 0.00 ATOM 332 O ALA 97 -9.883 -21.629 20.996 1.00 0.00 ATOM 333 N CYS 98 -12.067 -21.432 21.570 1.00 0.00 ATOM 334 CA CYS 98 -12.368 -20.715 20.335 1.00 0.00 ATOM 335 C CYS 98 -11.539 -19.436 20.201 1.00 0.00 ATOM 336 O CYS 98 -10.872 -19.263 19.185 1.00 0.00 ATOM 337 N ALA 99 -11.508 -18.592 21.237 1.00 0.00 ATOM 338 CA ALA 99 -10.811 -17.311 21.103 1.00 0.00 ATOM 339 C ALA 99 -9.315 -17.457 20.861 1.00 0.00 ATOM 340 O ALA 99 -8.723 -16.669 20.119 1.00 0.00 ATOM 341 N GLN 100 -8.691 -18.438 21.493 1.00 0.00 ATOM 342 CA GLN 100 -7.243 -18.555 21.361 1.00 0.00 ATOM 343 C GLN 100 -6.843 -19.426 20.175 1.00 0.00 ATOM 344 O GLN 100 -5.656 -19.486 19.845 1.00 0.00 ATOM 345 N VAL 101 -7.826 -20.071 19.532 1.00 0.00 ATOM 346 CA VAL 101 -7.534 -20.980 18.407 1.00 0.00 ATOM 347 C VAL 101 -7.951 -20.471 17.045 1.00 0.00 ATOM 348 O VAL 101 -7.205 -20.619 16.104 1.00 0.00 ATOM 349 N ASN 102 -9.129 -19.875 16.958 1.00 0.00 ATOM 350 CA ASN 102 -9.630 -19.331 15.711 1.00 0.00 ATOM 351 C ASN 102 -8.753 -18.258 15.071 1.00 0.00 ATOM 352 O ASN 102 -7.927 -17.640 15.730 1.00 0.00 ATOM 353 N ALA 103 -8.935 -18.050 13.765 1.00 0.00 ATOM 354 CA ALA 103 -8.177 -17.072 12.998 1.00 0.00 ATOM 355 C ALA 103 -8.936 -15.764 13.039 1.00 0.00 ATOM 356 O ALA 103 -10.154 -15.766 13.340 1.00 0.00 ATOM 357 N SER 104 -8.232 -14.659 12.750 1.00 0.00 ATOM 358 CA SER 104 -8.878 -13.372 12.605 1.00 0.00 ATOM 359 C SER 104 -9.532 -13.320 11.260 1.00 0.00 ATOM 360 O SER 104 -9.027 -13.887 10.301 1.00 0.00 ATOM 361 N LYS 105 -10.647 -12.630 11.131 1.00 0.00 ATOM 362 CA LYS 105 -11.067 -12.364 9.777 1.00 0.00 ATOM 363 C LYS 105 -11.072 -10.857 9.543 1.00 0.00 ATOM 364 O LYS 105 -11.801 -10.358 8.704 1.00 0.00 ATOM 365 N SER 106 -10.234 -10.142 10.277 1.00 0.00 ATOM 366 CA SER 106 -10.049 -8.715 10.061 1.00 0.00 ATOM 367 C SER 106 -8.591 -8.360 9.755 1.00 0.00 ATOM 368 O SER 106 -7.713 -8.630 10.548 1.00 0.00 END ########################## # # # ACE results: # # # ########################## # WARNING! TARGET 787 atoms, MODEL 499 atoms, 455 common with TARGET Number of atoms possible to evaluate: 324 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 57.39 69.2 156 83.0 188 ARMSMC SECONDARY STRUCTURE . . 55.70 72.4 116 89.2 130 ARMSMC SURFACE . . . . . . . . 60.47 68.1 116 80.6 144 ARMSMC BURIED . . . . . . . . 47.33 72.5 40 90.9 44 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 88 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 84 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 62 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 67 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 21 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 67 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 48 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 48 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 52 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 24 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 20 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 18 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 14 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 10 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.45 (Number of atoms: 81) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.45 81 85.3 95 CRMSCA CRN = ALL/NP . . . . . 0.0920 CRMSCA SECONDARY STRUCTURE . . 6.36 59 90.8 65 CRMSCA SURFACE . . . . . . . . 7.76 61 83.6 73 CRMSCA BURIED . . . . . . . . 6.43 20 90.9 22 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.39 324 68.5 473 CRMSMC SECONDARY STRUCTURE . . 6.35 236 72.6 325 CRMSMC SURFACE . . . . . . . . 7.66 244 67.2 363 CRMSMC BURIED . . . . . . . . 6.51 80 72.7 110 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 407 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 343 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 287 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 315 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 92 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 7.39 324 41.2 787 CRMSALL SECONDARY STRUCTURE . . 6.35 236 43.1 547 CRMSALL SURFACE . . . . . . . . 7.66 244 40.2 607 CRMSALL BURIED . . . . . . . . 6.51 80 44.4 180 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.097 1.000 0.500 81 85.3 95 ERRCA SECONDARY STRUCTURE . . 5.323 1.000 0.500 59 90.8 65 ERRCA SURFACE . . . . . . . . 6.265 1.000 0.500 61 83.6 73 ERRCA BURIED . . . . . . . . 5.583 1.000 0.500 20 90.9 22 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.053 1.000 0.500 324 68.5 473 ERRMC SECONDARY STRUCTURE . . 5.317 1.000 0.500 236 72.6 325 ERRMC SURFACE . . . . . . . . 6.193 1.000 0.500 244 67.2 363 ERRMC BURIED . . . . . . . . 5.627 1.000 0.500 80 72.7 110 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 407 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 343 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 287 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 315 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 92 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.053 1.000 0.500 324 41.2 787 ERRALL SECONDARY STRUCTURE . . 5.317 1.000 0.500 236 43.1 547 ERRALL SURFACE . . . . . . . . 6.193 1.000 0.500 244 40.2 607 ERRALL BURIED . . . . . . . . 5.627 1.000 0.500 80 44.4 180 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 1 7 21 40 68 81 95 DISTCA CA (P) 1.05 7.37 22.11 42.11 71.58 95 DISTCA CA (RMS) 0.69 1.23 2.29 3.20 5.11 DISTCA ALL (N) 9 30 75 157 277 324 787 DISTALL ALL (P) 1.14 3.81 9.53 19.95 35.20 787 DISTALL ALL (RMS) 0.77 1.35 2.17 3.12 5.21 DISTALL END of the results output