####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 57 ( 228), selected 57 , name T0548AL285_1-D2 # Molecule2: number of CA atoms 60 ( 491), selected 57 , name T0548-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548AL285_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 57 47 - 106 2.82 2.82 LCS_AVERAGE: 95.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 28 47 - 74 1.82 2.90 LCS_AVERAGE: 42.57 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 83 - 101 0.90 4.03 LONGEST_CONTINUOUS_SEGMENT: 19 84 - 102 0.91 3.40 LCS_AVERAGE: 25.61 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 57 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT D 47 D 47 8 28 57 5 6 29 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT Q 48 Q 48 16 28 57 5 6 8 37 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT F 49 F 49 17 28 57 11 22 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT T 50 T 50 17 28 57 11 18 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT F 51 F 51 17 28 57 11 18 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT E 52 E 52 17 28 57 11 23 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT L 53 L 53 17 28 57 11 23 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT L 54 L 54 17 28 57 11 23 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT D 55 D 55 17 28 57 11 23 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT F 56 F 56 17 28 57 11 23 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT L 57 L 57 17 28 57 11 21 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT H 58 H 58 17 28 57 11 23 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT Q 59 Q 59 17 28 57 11 21 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT L 60 L 60 17 28 57 9 18 29 38 44 46 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT T 61 T 61 17 28 57 4 21 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT H 62 H 62 17 28 57 11 23 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT L 63 L 63 17 28 57 11 23 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT S 64 S 64 17 28 57 11 23 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT F 65 F 65 17 28 57 8 23 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT S 66 S 66 14 28 57 8 14 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT K 67 K 67 14 28 57 8 20 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT M 68 M 68 14 28 57 7 17 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT K 69 K 69 14 28 57 8 14 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT A 70 A 70 14 28 57 8 13 25 35 42 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT L 71 L 71 14 28 57 8 13 20 35 41 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT L 72 L 72 14 28 57 8 13 20 34 41 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT E 73 E 73 14 28 57 8 13 22 35 42 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT R 74 R 74 14 28 57 6 13 20 29 41 43 48 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT P 78 P 78 4 25 57 3 3 7 8 11 19 28 47 51 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT Y 79 Y 79 4 25 57 5 6 7 10 18 35 48 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT Y 80 Y 80 6 25 57 3 6 21 38 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT M 81 M 81 14 25 57 3 7 26 36 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT L 82 L 82 17 25 57 3 9 15 31 38 45 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT N 83 N 83 19 25 57 3 7 15 31 38 45 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT R 84 R 84 19 25 57 9 23 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT D 85 D 85 19 25 57 7 23 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT R 86 R 86 19 25 57 9 23 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT T 87 T 87 19 25 57 11 23 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT L 88 L 88 19 25 57 11 23 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT K 89 K 89 19 25 57 11 23 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT N 90 N 90 19 25 57 11 23 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT I 91 I 91 19 25 57 11 23 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT T 92 T 92 19 25 57 8 23 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT E 93 E 93 19 25 57 6 21 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT T 94 T 94 19 25 57 6 21 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT C 95 C 95 19 25 57 6 23 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT K 96 K 96 19 25 57 11 23 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT A 97 A 97 19 25 57 11 23 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT C 98 C 98 19 25 57 11 23 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT A 99 A 99 19 25 57 10 23 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT Q 100 Q 100 19 25 57 5 23 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT V 101 V 101 19 25 57 11 23 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT N 102 N 102 19 25 57 3 14 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT A 103 A 103 3 25 57 3 3 4 8 34 45 49 53 53 53 55 55 56 56 57 57 57 57 57 57 LCS_GDT S 104 S 104 3 12 57 3 3 4 8 15 32 39 47 49 52 55 55 56 56 57 57 57 57 57 57 LCS_GDT K 105 K 105 3 5 57 3 3 4 8 11 15 33 39 48 49 53 55 56 56 57 57 57 57 57 57 LCS_GDT S 106 S 106 3 5 57 0 3 4 6 10 12 21 26 43 46 50 51 55 56 57 57 57 57 57 57 LCS_AVERAGE LCS_A: 54.40 ( 25.61 42.57 95.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 23 31 40 44 47 49 53 53 53 55 55 56 56 57 57 57 57 57 57 GDT PERCENT_AT 18.33 38.33 51.67 66.67 73.33 78.33 81.67 88.33 88.33 88.33 91.67 91.67 93.33 93.33 95.00 95.00 95.00 95.00 95.00 95.00 GDT RMS_LOCAL 0.25 0.63 0.87 1.24 1.38 1.61 1.75 2.08 2.08 2.08 2.37 2.37 2.56 2.56 2.82 2.82 2.82 2.82 2.82 2.82 GDT RMS_ALL_AT 4.27 3.45 3.42 3.04 3.09 2.98 3.00 2.98 2.98 2.98 2.89 2.89 2.84 2.84 2.82 2.82 2.82 2.82 2.82 2.82 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA D 47 D 47 2.175 4 0.042 0.042 2.199 64.762 32.381 LGA Q 48 Q 48 2.462 5 0.170 0.170 2.495 66.786 29.683 LGA F 49 F 49 0.808 7 0.175 0.175 0.902 90.476 32.900 LGA T 50 T 50 1.232 3 0.031 0.031 1.232 83.690 47.823 LGA F 51 F 51 1.264 7 0.023 0.023 1.315 85.952 31.255 LGA E 52 E 52 1.159 5 0.026 0.026 1.194 83.690 37.196 LGA L 53 L 53 1.012 4 0.027 0.027 1.421 83.690 41.845 LGA L 54 L 54 0.909 4 0.033 0.033 0.909 90.476 45.238 LGA D 55 D 55 1.237 4 0.047 0.047 1.673 79.405 39.702 LGA F 56 F 56 2.270 7 0.033 0.033 2.614 64.881 23.593 LGA L 57 L 57 2.249 4 0.112 0.112 2.249 64.762 32.381 LGA H 58 H 58 1.566 6 0.025 0.025 2.071 70.833 28.333 LGA Q 59 Q 59 2.483 5 0.129 0.129 2.718 60.952 27.090 LGA L 60 L 60 3.182 4 0.166 0.166 3.182 61.190 30.595 LGA T 61 T 61 2.075 3 0.259 0.259 2.378 68.810 39.320 LGA H 62 H 62 0.719 6 0.113 0.113 1.210 88.214 35.286 LGA L 63 L 63 0.926 4 0.020 0.020 0.926 90.476 45.238 LGA S 64 S 64 0.862 2 0.095 0.095 0.914 90.476 60.317 LGA F 65 F 65 0.732 7 0.039 0.039 0.863 92.857 33.766 LGA S 66 S 66 1.463 2 0.061 0.061 2.034 79.524 53.016 LGA K 67 K 67 0.766 5 0.094 0.094 1.745 83.810 37.249 LGA M 68 M 68 1.320 4 0.006 0.006 2.059 77.381 38.690 LGA K 69 K 69 1.533 5 0.060 0.060 2.262 72.976 32.434 LGA A 70 A 70 2.525 1 0.043 0.043 2.981 59.048 47.238 LGA L 71 L 71 3.090 4 0.101 0.101 3.111 51.786 25.893 LGA L 72 L 72 3.087 4 0.048 0.048 3.528 50.119 25.060 LGA E 73 E 73 3.029 5 0.024 0.024 3.819 48.452 21.534 LGA R 74 R 74 4.411 7 0.128 0.128 4.864 35.833 13.030 LGA P 78 P 78 5.593 3 0.084 0.084 5.593 25.000 14.286 LGA Y 79 Y 79 4.200 8 0.082 0.082 4.701 42.143 14.048 LGA Y 80 Y 80 2.549 8 0.166 0.166 3.148 63.214 21.071 LGA M 81 M 81 2.661 4 0.241 0.241 2.805 62.976 31.488 LGA L 82 L 82 4.165 4 0.011 0.011 4.165 41.786 20.893 LGA N 83 N 83 3.838 4 0.116 0.116 3.894 50.238 25.119 LGA R 84 R 84 1.792 7 0.098 0.098 2.527 73.214 26.623 LGA D 85 D 85 1.307 4 0.026 0.026 1.521 83.810 41.905 LGA R 86 R 86 0.742 7 0.016 0.016 1.033 92.976 33.810 LGA T 87 T 87 0.646 3 0.054 0.054 0.646 95.238 54.422 LGA L 88 L 88 0.486 4 0.020 0.020 0.605 95.238 47.619 LGA K 89 K 89 0.660 5 0.104 0.104 1.036 88.214 39.206 LGA N 90 N 90 0.748 4 0.034 0.034 1.188 90.595 45.298 LGA I 91 I 91 0.344 4 0.031 0.031 0.873 95.238 47.619 LGA T 92 T 92 1.037 3 0.096 0.096 1.299 83.690 47.823 LGA E 93 E 93 2.240 5 0.022 0.022 2.680 64.881 28.836 LGA T 94 T 94 2.185 3 0.025 0.025 2.185 68.810 39.320 LGA C 95 C 95 1.079 2 0.058 0.058 1.352 81.429 54.286 LGA K 96 K 96 1.286 5 0.102 0.102 1.286 85.952 38.201 LGA A 97 A 97 0.474 1 0.047 0.047 0.626 95.238 76.190 LGA C 98 C 98 0.555 2 0.089 0.089 0.846 92.857 61.905 LGA A 99 A 99 0.834 1 0.037 0.037 1.171 85.952 68.762 LGA Q 100 Q 100 1.486 5 0.218 0.218 1.760 79.286 35.238 LGA V 101 V 101 1.423 3 0.171 0.171 1.423 83.690 47.823 LGA N 102 N 102 1.307 4 0.659 0.659 1.561 79.405 39.702 LGA A 103 A 103 4.617 1 0.671 0.671 7.237 27.738 22.190 LGA S 104 S 104 7.306 2 0.398 0.398 7.451 14.881 9.921 LGA K 105 K 105 8.483 5 0.490 0.490 11.680 2.500 1.111 LGA S 106 S 106 10.918 2 0.564 0.564 10.918 1.667 1.111 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 57 228 228 100.00 469 228 48.61 60 SUMMARY(RMSD_GDC): 2.816 2.756 2.756 66.486 33.732 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 57 60 4.0 53 2.08 72.083 67.683 2.434 LGA_LOCAL RMSD: 2.078 Number of atoms: 53 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.975 Number of assigned atoms: 57 Std_ASGN_ATOMS RMSD: 2.816 Standard rmsd on all 57 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.715097 * X + -0.204461 * Y + 0.668456 * Z + 59.527195 Y_new = -0.603202 * X + 0.302755 * Y + 0.737893 * Z + -28.682219 Z_new = -0.353249 * X + -0.930879 * Y + 0.093168 * Z + 27.923735 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.700723 0.361041 -1.471042 [DEG: -40.1485 20.6861 -84.2845 ] ZXZ: 2.405529 1.477493 -2.778901 [DEG: 137.8267 84.6541 -159.2193 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548AL285_1-D2 REMARK 2: T0548-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548AL285_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 57 60 4.0 53 2.08 67.683 2.82 REMARK ---------------------------------------------------------- MOLECULE T0548AL285_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 3l2tA ATOM 125 N ASP 47 -35.773 -20.681 30.400 1.00 0.00 N ATOM 126 CA ASP 47 -34.598 -19.807 30.412 1.00 0.00 C ATOM 127 C ASP 47 -33.418 -20.432 31.153 1.00 0.00 C ATOM 128 O ASP 47 -32.296 -20.398 30.666 1.00 0.00 O ATOM 129 N GLN 48 -33.671 -21.021 32.322 1.00 0.00 N ATOM 130 CA GLN 48 -32.588 -21.555 33.154 1.00 0.00 C ATOM 131 C GLN 48 -31.796 -22.689 32.479 1.00 0.00 C ATOM 132 O GLN 48 -30.760 -23.104 32.976 1.00 0.00 O ATOM 133 N PHE 49 -32.287 -23.175 31.346 1.00 0.00 N ATOM 134 CA PHE 49 -31.678 -24.311 30.663 1.00 0.00 C ATOM 135 C PHE 49 -30.879 -23.936 29.415 1.00 0.00 C ATOM 136 O PHE 49 -30.063 -24.714 28.924 1.00 0.00 O ATOM 137 N THR 50 -31.135 -22.741 28.906 1.00 0.00 N ATOM 138 CA THR 50 -30.687 -22.335 27.596 1.00 0.00 C ATOM 139 C THR 50 -29.171 -22.209 27.476 1.00 0.00 C ATOM 140 O THR 50 -28.586 -22.614 26.472 1.00 0.00 O ATOM 141 N PHE 51 -28.529 -21.658 28.497 1.00 0.00 N ATOM 142 CA PHE 51 -27.087 -21.536 28.458 1.00 0.00 C ATOM 143 C PHE 51 -26.470 -22.928 28.340 1.00 0.00 C ATOM 144 O PHE 51 -25.611 -23.142 27.511 1.00 0.00 O ATOM 145 N GLU 52 -26.934 -23.872 29.155 1.00 0.00 N ATOM 146 CA GLU 52 -26.487 -25.282 29.102 1.00 0.00 C ATOM 147 C GLU 52 -26.719 -25.856 27.708 1.00 0.00 C ATOM 148 O GLU 52 -25.869 -26.572 27.194 1.00 0.00 O ATOM 149 N LEU 53 -27.858 -25.521 27.099 1.00 0.00 N ATOM 150 CA LEU 53 -28.190 -25.981 25.748 1.00 0.00 C ATOM 151 C LEU 53 -27.227 -25.433 24.695 1.00 0.00 C ATOM 152 O LEU 53 -26.674 -26.211 23.902 1.00 0.00 O ATOM 153 N LEU 54 -27.015 -24.116 24.713 1.00 0.00 N ATOM 154 CA LEU 54 -26.167 -23.434 23.735 1.00 0.00 C ATOM 155 C LEU 54 -24.750 -23.992 23.817 1.00 0.00 C ATOM 156 O LEU 54 -24.069 -24.157 22.811 1.00 0.00 O ATOM 157 N ASP 55 -24.328 -24.309 25.030 1.00 0.00 N ATOM 158 CA ASP 55 -23.001 -24.799 25.260 1.00 0.00 C ATOM 159 C ASP 55 -22.845 -26.167 24.659 1.00 0.00 C ATOM 160 O ASP 55 -21.802 -26.489 24.108 1.00 0.00 O ATOM 161 N PHE 56 -23.886 -26.979 24.781 1.00 0.00 N ATOM 162 CA PHE 56 -23.826 -28.361 24.324 1.00 0.00 C ATOM 163 C PHE 56 -23.670 -28.372 22.825 1.00 0.00 C ATOM 164 O PHE 56 -22.836 -29.125 22.286 1.00 0.00 O ATOM 165 N LEU 57 -24.468 -27.522 22.172 1.00 0.00 N ATOM 166 CA LEU 57 -24.466 -27.424 20.726 1.00 0.00 C ATOM 167 C LEU 57 -23.102 -26.955 20.327 1.00 0.00 C ATOM 168 O LEU 57 -22.414 -27.631 19.579 1.00 0.00 O ATOM 169 N HIS 58 -22.680 -25.826 20.876 1.00 0.00 N ATOM 170 CA HIS 58 -21.374 -25.292 20.551 1.00 0.00 C ATOM 171 C HIS 58 -20.225 -26.289 20.728 1.00 0.00 C ATOM 172 O HIS 58 -19.316 -26.359 19.898 1.00 0.00 O ATOM 173 N GLN 59 -20.247 -27.064 21.791 1.00 0.00 N ATOM 174 CA GLN 59 -19.083 -27.878 22.069 1.00 0.00 C ATOM 175 C GLN 59 -18.912 -29.084 21.157 1.00 0.00 C ATOM 176 O GLN 59 -17.827 -29.710 21.161 1.00 0.00 O ATOM 177 N LEU 60 -19.963 -29.423 20.385 1.00 0.00 N ATOM 178 CA LEU 60 -19.892 -30.604 19.503 1.00 0.00 C ATOM 179 C LEU 60 -18.691 -30.474 18.611 1.00 0.00 C ATOM 180 O LEU 60 -17.893 -31.391 18.556 1.00 0.00 O ATOM 181 N THR 61 -18.526 -29.314 17.975 1.00 0.00 N ATOM 182 CA THR 61 -17.317 -29.044 17.196 1.00 0.00 C ATOM 183 C THR 61 -16.783 -27.619 17.332 1.00 0.00 C ATOM 184 O THR 61 -16.046 -27.153 16.461 1.00 0.00 O ATOM 185 N HIS 62 -17.156 -26.926 18.411 1.00 0.00 N ATOM 186 CA HIS 62 -16.735 -25.532 18.642 1.00 0.00 C ATOM 187 C HIS 62 -16.989 -24.678 17.424 1.00 0.00 C ATOM 188 O HIS 62 -16.092 -23.957 16.940 1.00 0.00 O ATOM 189 N LEU 63 -18.226 -24.793 16.934 1.00 0.00 N ATOM 190 CA LEU 63 -18.703 -24.032 15.786 1.00 0.00 C ATOM 191 C LEU 63 -18.994 -22.571 16.131 1.00 0.00 C ATOM 192 O LEU 63 -19.349 -22.230 17.279 1.00 0.00 O ATOM 193 N SER 64 -18.838 -21.724 15.119 1.00 0.00 N ATOM 194 CA SER 64 -19.175 -20.298 15.195 1.00 0.00 C ATOM 195 C SER 64 -20.668 -20.019 15.295 1.00 0.00 C ATOM 196 O SER 64 -21.443 -20.897 15.678 1.00 0.00 O ATOM 197 N PHE 65 -21.082 -18.803 14.942 1.00 0.00 N ATOM 198 CA PHE 65 -22.459 -18.374 15.213 1.00 0.00 C ATOM 199 C PHE 65 -23.482 -19.225 14.481 1.00 0.00 C ATOM 200 O PHE 65 -24.232 -19.951 15.116 1.00 0.00 O ATOM 201 N SER 66 -23.493 -19.153 13.150 1.00 0.00 N ATOM 202 CA SER 66 -24.540 -19.798 12.371 1.00 0.00 C ATOM 203 C SER 66 -24.511 -21.326 12.491 1.00 0.00 C ATOM 204 O SER 66 -25.553 -21.983 12.683 1.00 0.00 O ATOM 205 N LYS 67 -23.321 -21.899 12.423 1.00 0.00 N ATOM 206 CA LYS 67 -23.256 -23.347 12.526 1.00 0.00 C ATOM 207 C LYS 67 -23.740 -23.840 13.901 1.00 0.00 C ATOM 208 O LYS 67 -24.316 -24.929 14.003 1.00 0.00 O ATOM 209 N MET 68 -23.546 -23.040 14.945 1.00 0.00 N ATOM 210 CA MET 68 -24.070 -23.406 16.265 1.00 0.00 C ATOM 211 C MET 68 -25.578 -23.221 16.309 1.00 0.00 C ATOM 212 O MET 68 -26.313 -24.105 16.753 1.00 0.00 O ATOM 213 N LYS 69 -26.040 -22.069 15.849 1.00 0.00 N ATOM 214 CA LYS 69 -27.465 -21.842 15.818 1.00 0.00 C ATOM 215 C LYS 69 -28.217 -22.933 15.005 1.00 0.00 C ATOM 216 O LYS 69 -29.270 -23.414 15.426 1.00 0.00 O ATOM 217 N ALA 70 -27.669 -23.332 13.857 1.00 0.00 N ATOM 218 CA ALA 70 -28.319 -24.366 13.042 1.00 0.00 C ATOM 219 C ALA 70 -28.582 -25.684 13.756 1.00 0.00 C ATOM 220 O ALA 70 -29.594 -26.328 13.478 1.00 0.00 O ATOM 221 N LEU 71 -27.692 -26.087 14.666 1.00 0.00 N ATOM 222 CA LEU 71 -27.949 -27.281 15.450 1.00 0.00 C ATOM 223 C LEU 71 -29.098 -26.978 16.363 1.00 0.00 C ATOM 224 O LEU 71 -30.103 -27.675 16.350 1.00 0.00 O ATOM 225 N LEU 72 -28.963 -25.919 17.148 1.00 0.00 N ATOM 226 CA LEU 72 -29.949 -25.605 18.180 1.00 0.00 C ATOM 227 C LEU 72 -31.333 -25.509 17.550 1.00 0.00 C ATOM 228 O LEU 72 -32.307 -26.034 18.087 1.00 0.00 O ATOM 229 N GLU 73 -31.402 -24.879 16.382 1.00 0.00 N ATOM 230 CA GLU 73 -32.660 -24.696 15.682 1.00 0.00 C ATOM 231 C GLU 73 -33.334 -26.025 15.354 1.00 0.00 C ATOM 232 O GLU 73 -34.555 -26.107 15.365 1.00 0.00 O ATOM 233 N ARG 74 -32.564 -27.066 15.068 1.00 0.00 N ATOM 234 CA ARG 74 -33.188 -28.371 14.897 1.00 0.00 C ATOM 235 C ARG 74 -34.212 -28.729 15.960 1.00 0.00 C ATOM 236 O ARG 74 -35.282 -29.230 15.642 1.00 0.00 O ATOM 237 N PRO 78 -33.887 -28.454 17.215 1.00 0.00 N ATOM 238 CA PRO 78 -34.724 -28.906 18.305 1.00 0.00 C ATOM 239 C PRO 78 -35.465 -27.808 19.009 1.00 0.00 C ATOM 240 O PRO 78 -36.602 -28.030 19.448 1.00 0.00 O ATOM 241 N TYR 79 -34.849 -26.639 19.144 1.00 0.00 N ATOM 242 CA TYR 79 -35.450 -25.630 20.008 1.00 0.00 C ATOM 243 C TYR 79 -35.853 -24.363 19.336 1.00 0.00 C ATOM 244 O TYR 79 -35.474 -24.101 18.206 1.00 0.00 O ATOM 245 N TYR 80 -36.672 -23.599 20.041 1.00 0.00 N ATOM 246 CA TYR 80 -36.861 -22.199 19.709 1.00 0.00 C ATOM 247 C TYR 80 -36.972 -21.344 20.972 1.00 0.00 C ATOM 248 O TYR 80 -37.460 -21.811 21.999 1.00 0.00 O ATOM 249 N MET 81 -36.472 -20.116 20.893 1.00 0.00 N ATOM 250 CA MET 81 -36.736 -19.107 21.892 1.00 0.00 C ATOM 251 C MET 81 -36.339 -17.728 21.361 1.00 0.00 C ATOM 252 O MET 81 -35.595 -17.637 20.371 1.00 0.00 O ATOM 253 N LEU 82 -36.833 -16.645 21.997 1.00 0.00 N ATOM 254 CA LEU 82 -36.557 -15.295 21.526 1.00 0.00 C ATOM 255 C LEU 82 -35.080 -15.008 21.523 1.00 0.00 C ATOM 256 O LEU 82 -34.405 -15.259 22.532 1.00 0.00 O ATOM 257 N ASN 83 -34.603 -14.507 20.381 1.00 0.00 N ATOM 258 CA ASN 83 -33.237 -14.010 20.219 1.00 0.00 C ATOM 259 C ASN 83 -32.210 -15.079 20.575 1.00 0.00 C ATOM 260 O ASN 83 -31.404 -14.926 21.497 1.00 0.00 O ATOM 261 N ARG 84 -32.263 -16.173 19.833 1.00 0.00 N ATOM 262 CA ARG 84 -31.344 -17.267 20.006 1.00 0.00 C ATOM 263 C ARG 84 -29.912 -16.864 19.758 1.00 0.00 C ATOM 264 O ARG 84 -29.020 -17.177 20.553 1.00 0.00 O ATOM 265 N ASP 85 -29.664 -16.144 18.677 1.00 0.00 N ATOM 266 CA ASP 85 -28.266 -15.811 18.391 1.00 0.00 C ATOM 267 C ASP 85 -27.627 -14.981 19.502 1.00 0.00 C ATOM 268 O ASP 85 -26.439 -15.166 19.773 1.00 0.00 O ATOM 269 N ARG 86 -28.412 -14.124 20.177 1.00 0.00 N ATOM 270 CA ARG 86 -27.870 -13.312 21.287 1.00 0.00 C ATOM 271 C ARG 86 -27.232 -14.237 22.334 1.00 0.00 C ATOM 272 O ARG 86 -26.076 -14.040 22.737 1.00 0.00 O ATOM 273 N THR 87 -27.952 -15.279 22.721 1.00 0.00 N ATOM 274 CA THR 87 -27.376 -16.281 23.605 1.00 0.00 C ATOM 275 C THR 87 -26.225 -17.049 22.959 1.00 0.00 C ATOM 276 O THR 87 -25.279 -17.421 23.662 1.00 0.00 O ATOM 277 N LEU 88 -26.285 -17.293 21.645 1.00 0.00 N ATOM 278 CA LEU 88 -25.197 -18.022 20.996 1.00 0.00 C ATOM 279 C LEU 88 -23.934 -17.182 21.057 1.00 0.00 C ATOM 280 O LEU 88 -22.851 -17.675 21.359 1.00 0.00 O ATOM 281 N LYS 89 -24.082 -15.893 20.804 1.00 0.00 N ATOM 282 CA LYS 89 -22.916 -15.021 20.765 1.00 0.00 C ATOM 283 C LYS 89 -22.349 -14.857 22.157 1.00 0.00 C ATOM 284 O LYS 89 -21.150 -14.764 22.311 1.00 0.00 O ATOM 285 N ASN 90 -23.210 -14.840 23.175 1.00 0.00 N ATOM 286 CA ASN 90 -22.730 -14.705 24.560 1.00 0.00 C ATOM 287 C ASN 90 -21.775 -15.850 24.860 1.00 0.00 C ATOM 288 O ASN 90 -20.727 -15.636 25.481 1.00 0.00 O ATOM 289 N ILE 91 -22.122 -17.048 24.382 1.00 0.00 N ATOM 290 CA ILE 91 -21.262 -18.201 24.550 1.00 0.00 C ATOM 291 C ILE 91 -19.946 -18.047 23.835 1.00 0.00 C ATOM 292 O ILE 91 -18.891 -18.147 24.468 1.00 0.00 O ATOM 293 N THR 92 -19.997 -17.777 22.531 1.00 0.00 N ATOM 294 CA THR 92 -18.789 -17.671 21.726 1.00 0.00 C ATOM 295 C THR 92 -17.745 -16.729 22.310 1.00 0.00 C ATOM 296 O THR 92 -16.556 -16.951 22.109 1.00 0.00 O ATOM 297 N GLU 93 -18.171 -15.699 23.037 1.00 0.00 N ATOM 298 CA GLU 93 -17.242 -14.744 23.624 1.00 0.00 C ATOM 299 C GLU 93 -16.605 -15.250 24.905 1.00 0.00 C ATOM 300 O GLU 93 -15.618 -14.682 25.362 1.00 0.00 O ATOM 301 N THR 94 -17.173 -16.309 25.481 1.00 0.00 N ATOM 302 CA THR 94 -16.647 -16.923 26.711 1.00 0.00 C ATOM 303 C THR 94 -15.925 -18.259 26.485 1.00 0.00 C ATOM 304 O THR 94 -15.487 -18.889 27.460 1.00 0.00 O ATOM 305 N CYS 95 -15.823 -18.713 25.229 1.00 0.00 N ATOM 306 CA CYS 95 -15.136 -19.969 24.938 1.00 0.00 C ATOM 307 C CYS 95 -13.652 -19.688 24.820 1.00 0.00 C ATOM 308 O CYS 95 -13.185 -19.186 23.809 1.00 0.00 O ATOM 309 N LYS 96 -12.899 -19.994 25.864 1.00 0.00 N ATOM 310 CA LYS 96 -11.472 -19.709 25.826 1.00 0.00 C ATOM 311 C LYS 96 -10.848 -20.317 24.551 1.00 0.00 C ATOM 312 O LYS 96 -10.117 -19.631 23.844 1.00 0.00 O ATOM 313 N ALA 97 -11.194 -21.569 24.232 1.00 0.00 N ATOM 314 CA ALA 97 -10.563 -22.290 23.125 1.00 0.00 C ATOM 315 C ALA 97 -10.851 -21.704 21.747 1.00 0.00 C ATOM 316 O ALA 97 -9.942 -21.565 20.897 1.00 0.00 O ATOM 317 N CYS 98 -12.120 -21.391 21.502 1.00 0.00 N ATOM 318 CA CYS 98 -12.447 -20.681 20.270 1.00 0.00 C ATOM 319 C CYS 98 -11.634 -19.393 20.120 1.00 0.00 C ATOM 320 O CYS 98 -10.984 -19.215 19.094 1.00 0.00 O ATOM 321 N ALA 99 -11.598 -18.547 21.154 1.00 0.00 N ATOM 322 CA ALA 99 -10.918 -17.258 21.007 1.00 0.00 C ATOM 323 C ALA 99 -9.424 -17.387 20.743 1.00 0.00 C ATOM 324 O ALA 99 -8.851 -16.595 19.991 1.00 0.00 O ATOM 325 N GLN 100 -8.780 -18.360 21.368 1.00 0.00 N ATOM 326 CA GLN 100 -7.332 -18.460 21.215 1.00 0.00 C ATOM 327 C GLN 100 -6.940 -19.330 20.026 1.00 0.00 C ATOM 328 O GLN 100 -5.757 -19.377 19.679 1.00 0.00 O ATOM 329 N VAL 101 -7.925 -19.988 19.399 1.00 0.00 N ATOM 330 CA VAL 101 -7.639 -20.897 18.272 1.00 0.00 C ATOM 331 C VAL 101 -8.081 -20.397 16.916 1.00 0.00 C ATOM 332 O VAL 101 -7.347 -20.539 15.964 1.00 0.00 O ATOM 333 N ASN 102 -9.268 -19.814 16.843 1.00 0.00 N ATOM 334 CA ASN 102 -9.793 -19.279 15.603 1.00 0.00 C ATOM 335 C ASN 102 -8.937 -18.198 14.947 1.00 0.00 C ATOM 336 O ASN 102 -8.109 -17.569 15.593 1.00 0.00 O ATOM 337 N ALA 103 -9.140 -17.995 13.644 1.00 0.00 N ATOM 338 CA ALA 103 -8.405 -17.011 12.863 1.00 0.00 C ATOM 339 C ALA 103 -9.179 -15.712 12.912 1.00 0.00 C ATOM 340 O ALA 103 -10.392 -15.727 13.230 1.00 0.00 O ATOM 341 N SER 104 -8.491 -14.600 12.610 1.00 0.00 N ATOM 342 CA SER 104 -9.154 -13.321 12.471 1.00 0.00 C ATOM 343 C SER 104 -9.828 -13.280 11.135 1.00 0.00 C ATOM 344 O SER 104 -9.330 -13.844 10.171 1.00 0.00 O ATOM 345 N LYS 105 -10.952 -12.602 11.021 1.00 0.00 N ATOM 346 CA LYS 105 -11.395 -12.346 9.672 1.00 0.00 C ATOM 347 C LYS 105 -11.421 -10.840 9.435 1.00 0.00 C ATOM 348 O LYS 105 -12.168 -10.351 8.605 1.00 0.00 O ATOM 349 N SER 106 -10.580 -10.113 10.155 1.00 0.00 N ATOM 350 CA SER 106 -10.414 -8.685 9.932 1.00 0.00 C ATOM 351 C SER 106 -8.965 -8.313 9.604 1.00 0.00 C ATOM 352 O SER 106 -8.073 -8.571 10.385 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 228 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 32.23 83.6 110 93.2 118 ARMSMC SECONDARY STRUCTURE . . 25.45 86.7 83 96.5 86 ARMSMC SURFACE . . . . . . . . 34.28 81.4 86 91.5 94 ARMSMC BURIED . . . . . . . . 23.44 91.7 24 100.0 24 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 56 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 55 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 40 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 44 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 42 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 27 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 31 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 13 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 14 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 8 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 7 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.82 (Number of atoms: 57) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.82 57 95.0 60 CRMSCA CRN = ALL/NP . . . . . 0.0494 CRMSCA SECONDARY STRUCTURE . . 1.92 42 97.7 43 CRMSCA SURFACE . . . . . . . . 3.03 45 93.8 48 CRMSCA BURIED . . . . . . . . 1.82 12 100.0 12 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.76 228 76.0 300 CRMSMC SECONDARY STRUCTURE . . 1.92 168 78.1 215 CRMSMC SURFACE . . . . . . . . 2.95 180 75.0 240 CRMSMC BURIED . . . . . . . . 1.84 48 80.0 60 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 251 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 207 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 184 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 203 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 48 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.76 228 46.4 491 CRMSALL SECONDARY STRUCTURE . . 1.92 168 47.2 356 CRMSALL SURFACE . . . . . . . . 2.95 180 45.6 395 CRMSALL BURIED . . . . . . . . 1.84 48 50.0 96 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.273 1.000 0.500 57 95.0 60 ERRCA SECONDARY STRUCTURE . . 1.731 1.000 0.500 42 97.7 43 ERRCA SURFACE . . . . . . . . 2.451 1.000 0.500 45 93.8 48 ERRCA BURIED . . . . . . . . 1.604 1.000 0.500 12 100.0 12 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.232 1.000 0.500 228 76.0 300 ERRMC SECONDARY STRUCTURE . . 1.727 1.000 0.500 168 78.1 215 ERRMC SURFACE . . . . . . . . 2.395 1.000 0.500 180 75.0 240 ERRMC BURIED . . . . . . . . 1.617 1.000 0.500 48 80.0 60 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 251 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 207 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 184 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 203 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 48 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.232 1.000 0.500 228 46.4 491 ERRALL SECONDARY STRUCTURE . . 1.727 1.000 0.500 168 47.2 356 ERRALL SURFACE . . . . . . . . 2.395 1.000 0.500 180 45.6 395 ERRALL BURIED . . . . . . . . 1.617 1.000 0.500 48 50.0 96 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 10 30 45 52 57 57 60 DISTCA CA (P) 16.67 50.00 75.00 86.67 95.00 60 DISTCA CA (RMS) 0.68 1.21 1.73 2.15 2.82 DISTCA ALL (N) 48 125 178 211 228 228 491 DISTALL ALL (P) 9.78 25.46 36.25 42.97 46.44 491 DISTALL ALL (RMS) 0.72 1.26 1.69 2.16 2.76 DISTALL END of the results output