####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 124), selected 31 , name T0548AL285_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 31 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 16 - 31 4.68 14.71 LCS_AVERAGE: 44.33 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 16 - 25 1.86 17.23 LONGEST_CONTINUOUS_SEGMENT: 10 35 - 44 1.59 16.93 LONGEST_CONTINUOUS_SEGMENT: 10 36 - 45 1.22 16.23 LCS_AVERAGE: 25.16 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 16 - 24 0.89 17.07 LONGEST_CONTINUOUS_SEGMENT: 9 36 - 44 0.74 16.19 LONGEST_CONTINUOUS_SEGMENT: 9 37 - 45 0.86 16.13 LCS_AVERAGE: 20.55 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT T 16 T 16 9 10 16 4 5 8 9 9 10 10 11 12 13 15 15 16 18 18 19 21 22 25 26 LCS_GDT V 17 V 17 9 10 16 4 7 8 9 9 10 10 11 12 13 15 15 16 18 18 19 21 22 24 26 LCS_GDT T 18 T 18 9 10 16 5 7 8 9 9 9 9 10 10 13 15 15 17 19 20 23 24 24 25 26 LCS_GDT D 19 D 19 9 10 16 5 7 8 9 9 10 11 11 12 12 15 18 19 20 21 23 24 24 25 26 LCS_GDT I 20 I 20 9 10 16 5 7 8 9 9 10 11 11 12 13 15 18 19 20 21 23 24 24 25 26 LCS_GDT K 21 K 21 9 10 16 5 7 8 9 9 9 9 10 11 11 13 18 19 20 21 23 24 24 25 26 LCS_GDT D 22 D 22 9 10 16 4 7 8 9 9 9 9 10 11 11 12 18 19 20 21 23 24 24 25 26 LCS_GDT L 23 L 23 9 10 16 5 7 8 9 9 9 9 10 10 11 15 18 19 20 21 23 24 24 25 26 LCS_GDT T 24 T 24 9 10 16 4 7 8 9 9 9 9 10 11 11 15 18 19 20 21 23 24 24 25 26 LCS_GDT K 25 K 25 3 10 16 3 3 4 4 5 9 9 10 11 11 15 18 19 20 21 23 24 24 25 26 LCS_GDT L 26 L 26 3 4 16 0 3 3 4 5 6 8 9 11 11 13 15 17 20 21 23 24 24 25 26 LCS_GDT G 27 G 27 3 4 16 3 3 3 4 5 5 8 9 11 12 15 18 19 20 21 23 24 24 25 26 LCS_GDT A 28 A 28 3 7 16 3 3 3 4 5 9 10 11 12 13 15 18 19 20 21 23 24 24 25 26 LCS_GDT I 29 I 29 6 8 16 4 5 6 7 9 10 11 11 12 13 15 18 19 20 21 23 24 24 25 26 LCS_GDT Y 30 Y 30 6 8 16 4 5 6 7 9 10 11 11 12 13 15 18 19 20 21 23 24 24 25 26 LCS_GDT D 31 D 31 6 8 16 4 5 6 7 9 10 11 11 12 13 15 18 19 20 21 23 24 24 25 26 LCS_GDT K 32 K 32 6 8 15 4 5 6 7 9 10 11 11 12 13 15 18 19 20 21 23 24 24 25 26 LCS_GDT T 33 T 33 6 8 15 4 5 6 7 9 10 11 11 12 13 15 18 19 20 21 23 24 24 25 26 LCS_GDT K 34 K 34 6 8 15 4 4 6 7 9 10 11 11 12 13 15 18 19 20 21 23 24 24 25 26 LCS_GDT K 35 K 35 4 10 15 3 4 6 7 9 10 11 11 12 13 15 18 19 20 21 23 24 24 25 26 LCS_GDT Y 36 Y 36 9 10 15 4 7 9 9 9 10 11 11 12 13 15 18 19 20 21 23 24 24 25 26 LCS_GDT W 37 W 37 9 10 15 7 8 9 9 9 10 10 10 11 12 13 15 17 20 21 23 24 24 25 26 LCS_GDT V 38 V 38 9 10 15 7 8 9 9 9 10 10 10 11 12 13 15 16 18 20 21 23 24 24 26 LCS_GDT Y 39 Y 39 9 10 15 7 8 9 9 9 10 10 10 11 12 13 13 14 17 18 19 23 24 24 26 LCS_GDT Q 40 Q 40 9 10 15 7 8 9 9 9 10 10 10 11 12 13 13 14 17 18 19 23 24 24 26 LCS_GDT G 41 G 41 9 10 15 7 8 9 9 9 10 10 10 11 12 13 13 14 17 19 21 23 24 24 26 LCS_GDT K 42 K 42 9 10 15 7 8 9 9 9 10 10 10 11 12 13 15 17 19 20 23 23 24 24 26 LCS_GDT P 43 P 43 9 10 15 7 8 9 9 9 10 10 10 12 12 13 15 17 20 21 23 24 24 25 26 LCS_GDT V 44 V 44 9 10 15 4 8 9 9 9 10 11 11 12 12 15 18 19 20 21 23 24 24 25 26 LCS_GDT M 45 M 45 9 10 15 3 4 8 9 9 10 10 10 11 11 14 18 19 20 21 23 24 24 25 26 LCS_GDT P 46 P 46 0 0 15 0 0 0 0 9 10 10 11 12 13 15 15 17 19 21 23 24 24 25 26 LCS_AVERAGE LCS_A: 30.02 ( 20.55 25.16 44.33 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 8 9 9 9 10 11 11 12 13 15 18 19 20 21 23 24 24 25 26 GDT PERCENT_AT 20.00 22.86 25.71 25.71 25.71 28.57 31.43 31.43 34.29 37.14 42.86 51.43 54.29 57.14 60.00 65.71 68.57 68.57 71.43 74.29 GDT RMS_LOCAL 0.27 0.35 0.74 0.74 0.74 1.22 2.14 2.14 2.62 3.03 3.55 4.99 4.99 5.15 5.28 5.72 5.92 5.92 6.28 6.50 GDT RMS_ALL_AT 16.05 15.96 16.19 16.19 16.19 16.23 9.09 9.09 8.88 11.45 11.06 9.41 9.36 9.12 9.01 8.90 9.44 9.44 9.58 9.67 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA T 16 T 16 9.720 3 0.399 0.399 9.720 6.786 3.878 LGA V 17 V 17 8.174 3 0.197 0.197 9.178 10.238 5.850 LGA T 18 T 18 6.905 3 0.156 0.156 7.202 21.667 12.381 LGA D 19 D 19 0.584 4 0.023 0.023 4.169 66.310 33.155 LGA I 20 I 20 1.708 4 0.026 0.026 5.861 55.476 27.738 LGA K 21 K 21 7.888 5 0.023 0.023 11.348 8.452 3.757 LGA D 22 D 22 10.889 4 0.021 0.021 13.777 0.357 0.179 LGA L 23 L 23 10.937 4 0.254 0.254 13.900 0.119 0.060 LGA T 24 T 24 12.402 3 0.146 0.146 14.302 0.000 0.000 LGA K 25 K 25 13.406 5 0.650 0.650 14.142 0.000 0.000 LGA L 26 L 26 13.676 4 0.654 0.654 13.676 0.000 0.000 LGA G 27 G 27 8.611 0 0.572 0.572 10.060 4.286 4.286 LGA A 28 A 28 7.638 1 0.073 0.073 7.638 22.619 18.095 LGA I 29 I 29 3.363 4 0.232 0.232 5.202 38.095 19.048 LGA Y 30 Y 30 2.388 8 0.303 0.303 2.568 71.310 23.770 LGA D 31 D 31 2.452 4 0.176 0.176 2.675 64.881 32.440 LGA K 32 K 32 0.851 5 0.549 0.549 3.100 78.095 34.709 LGA T 33 T 33 1.257 3 0.066 0.066 1.550 83.810 47.891 LGA K 34 K 34 1.145 5 0.657 0.657 2.932 75.357 33.492 LGA K 35 K 35 2.190 5 0.623 0.623 3.936 61.429 27.302 LGA Y 36 Y 36 2.277 8 0.194 0.194 6.560 43.571 14.524 LGA W 37 W 37 8.044 10 0.124 0.124 8.518 10.595 3.027 LGA V 38 V 38 11.995 3 0.013 0.013 15.450 0.000 0.000 LGA Y 39 Y 39 14.979 8 0.010 0.010 14.979 0.000 0.000 LGA Q 40 Q 40 17.689 5 0.036 0.036 17.689 0.000 0.000 LGA G 41 G 41 17.640 0 0.025 0.025 17.640 0.000 0.000 LGA K 42 K 42 10.433 5 0.030 0.030 12.881 0.714 0.317 LGA P 43 P 43 6.372 3 0.063 0.063 7.970 31.190 17.823 LGA V 44 V 44 3.224 3 0.114 0.114 3.272 51.786 29.592 LGA M 45 M 45 7.173 4 0.086 0.086 10.600 9.405 4.702 LGA P 46 P 46 9.574 3 0.117 0.117 11.653 0.833 0.476 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 253 124 49.01 35 SUMMARY(RMSD_GDC): 8.238 8.145 8.145 23.354 11.385 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 35 4.0 11 2.14 36.429 32.944 0.492 LGA_LOCAL RMSD: 2.138 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.091 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 8.238 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.232940 * X + -0.825472 * Y + -0.514135 * Z + -36.378048 Y_new = -0.428924 * X + -0.561686 * Y + 0.707484 * Z + 6.707319 Z_new = -0.872791 * X + 0.055724 * Y + -0.484903 * Z + -72.142227 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.073282 1.060891 3.027177 [DEG: -61.4945 60.7846 173.4445 ] ZXZ: -2.513165 2.077049 -1.507037 [DEG: -143.9937 119.0061 -86.3469 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548AL285_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 35 4.0 11 2.14 32.944 8.24 REMARK ---------------------------------------------------------- MOLECULE T0548AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 3l2tA ATOM 1 N THR 16 -36.345 -12.322 27.643 1.00 0.00 N ATOM 2 CA THR 16 -36.795 -11.060 28.310 1.00 0.00 C ATOM 3 C THR 16 -38.143 -11.271 29.000 1.00 0.00 C ATOM 4 O THR 16 -38.196 -11.609 30.186 1.00 0.00 O ATOM 5 N VAL 17 -39.226 -11.087 28.243 1.00 0.00 N ATOM 6 CA VAL 17 -40.597 -11.340 28.724 1.00 0.00 C ATOM 7 C VAL 17 -40.887 -12.833 29.003 1.00 0.00 C ATOM 8 O VAL 17 -41.909 -13.177 29.605 1.00 0.00 O ATOM 9 N THR 18 -39.983 -13.706 28.560 1.00 0.00 N ATOM 10 CA THR 18 -40.079 -15.143 28.822 1.00 0.00 C ATOM 11 C THR 18 -39.535 -15.515 30.201 1.00 0.00 C ATOM 12 O THR 18 -39.842 -16.589 30.730 1.00 0.00 O ATOM 13 N ASP 19 -38.722 -14.629 30.773 1.00 0.00 N ATOM 14 CA ASP 19 -38.213 -14.825 32.120 1.00 0.00 C ATOM 15 C ASP 19 -39.405 -14.962 33.075 1.00 0.00 C ATOM 16 O ASP 19 -39.472 -15.916 33.858 1.00 0.00 O ATOM 17 N ILE 20 -40.359 -14.034 32.967 1.00 0.00 N ATOM 18 CA ILE 20 -41.548 -14.003 33.836 1.00 0.00 C ATOM 19 C ILE 20 -42.243 -15.353 33.946 1.00 0.00 C ATOM 20 O ILE 20 -42.705 -15.742 35.027 1.00 0.00 O ATOM 21 N LYS 21 -42.287 -16.054 32.817 1.00 0.00 N ATOM 22 CA LYS 21 -43.131 -17.226 32.610 1.00 0.00 C ATOM 23 C LYS 21 -42.707 -18.453 33.428 1.00 0.00 C ATOM 24 O LYS 21 -43.542 -19.095 34.083 1.00 0.00 O ATOM 25 N ASP 22 -41.413 -18.771 33.384 1.00 0.00 N ATOM 26 CA ASP 22 -40.839 -19.876 34.160 1.00 0.00 C ATOM 27 C ASP 22 -40.955 -19.577 35.653 1.00 0.00 C ATOM 28 O ASP 22 -41.194 -20.477 36.462 1.00 0.00 O ATOM 29 N LEU 23 -40.811 -18.295 35.990 1.00 0.00 N ATOM 30 CA LEU 23 -41.031 -17.782 37.340 1.00 0.00 C ATOM 31 C LEU 23 -42.500 -17.895 37.788 1.00 0.00 C ATOM 32 O LEU 23 -42.848 -17.492 38.901 1.00 0.00 O ATOM 33 N THR 24 -43.353 -18.434 36.918 1.00 0.00 N ATOM 34 CA THR 24 -44.741 -18.732 37.264 1.00 0.00 C ATOM 35 C THR 24 -45.768 -17.625 37.085 1.00 0.00 C ATOM 36 O THR 24 -46.965 -17.902 37.118 1.00 0.00 O ATOM 37 N LYS 25 -45.311 -16.383 36.909 1.00 0.00 N ATOM 38 CA LYS 25 -46.196 -15.231 36.669 1.00 0.00 C ATOM 39 C LYS 25 -47.042 -15.366 35.384 1.00 0.00 C ATOM 40 O LYS 25 -46.602 -15.988 34.400 1.00 0.00 O ATOM 41 N LEU 26 -48.241 -14.774 35.383 1.00 0.00 N ATOM 42 CA LEU 26 -49.140 -14.821 34.214 1.00 0.00 C ATOM 43 C LEU 26 -48.814 -13.747 33.167 1.00 0.00 C ATOM 44 O LEU 26 -48.445 -12.629 33.532 1.00 0.00 O ATOM 45 N GLY 27 -48.974 -14.082 31.877 1.00 0.00 N ATOM 46 CA GLY 27 -48.902 -13.086 30.783 1.00 0.00 C ATOM 47 C GLY 27 -50.058 -13.229 29.783 1.00 0.00 C ATOM 48 O GLY 27 -50.452 -14.352 29.486 1.00 0.00 O ATOM 49 N ALA 28 -50.594 -12.103 29.285 1.00 0.00 N ATOM 50 CA ALA 28 -51.643 -12.109 28.241 1.00 0.00 C ATOM 51 C ALA 28 -51.190 -12.980 27.066 1.00 0.00 C ATOM 52 O ALA 28 -50.019 -12.938 26.689 1.00 0.00 O ATOM 53 N ILE 29 -52.121 -13.750 26.489 1.00 0.00 N ATOM 54 CA ILE 29 -51.780 -14.935 25.691 1.00 0.00 C ATOM 55 C ILE 29 -51.415 -16.000 26.712 1.00 0.00 C ATOM 56 O ILE 29 -52.004 -16.046 27.795 1.00 0.00 O ATOM 57 N TYR 30 -50.449 -16.850 26.388 1.00 0.00 N ATOM 58 CA TYR 30 -49.837 -17.767 27.367 1.00 0.00 C ATOM 59 C TYR 30 -50.753 -18.303 28.462 1.00 0.00 C ATOM 60 O TYR 30 -50.560 -17.972 29.630 1.00 0.00 O ATOM 61 N ASP 31 -51.738 -19.146 28.096 1.00 0.00 N ATOM 62 CA ASP 31 -52.625 -19.707 29.109 1.00 0.00 C ATOM 63 C ASP 31 -51.841 -20.381 30.214 1.00 0.00 C ATOM 64 O ASP 31 -50.847 -21.046 29.931 1.00 0.00 O ATOM 65 N LYS 32 -52.267 -20.199 31.461 1.00 0.00 N ATOM 66 CA LYS 32 -51.766 -21.034 32.551 1.00 0.00 C ATOM 67 C LYS 32 -52.539 -22.357 32.513 1.00 0.00 C ATOM 68 O LYS 32 -53.474 -22.496 31.722 1.00 0.00 O ATOM 69 N THR 33 -52.149 -23.313 33.357 1.00 0.00 N ATOM 70 CA THR 33 -52.606 -24.720 33.292 1.00 0.00 C ATOM 71 C THR 33 -51.600 -25.514 32.466 1.00 0.00 C ATOM 72 O THR 33 -51.597 -26.748 32.478 1.00 0.00 O ATOM 73 N LYS 34 -50.752 -24.784 31.748 1.00 0.00 N ATOM 74 CA LYS 34 -49.715 -25.377 30.928 1.00 0.00 C ATOM 75 C LYS 34 -48.379 -25.125 31.576 1.00 0.00 C ATOM 76 O LYS 34 -48.074 -23.990 31.925 1.00 0.00 O ATOM 77 N LYS 35 -47.591 -26.181 31.760 1.00 0.00 N ATOM 78 CA LYS 35 -46.262 -26.014 32.370 1.00 0.00 C ATOM 79 C LYS 35 -45.227 -25.553 31.336 1.00 0.00 C ATOM 80 O LYS 35 -45.047 -26.177 30.278 1.00 0.00 O ATOM 81 N TYR 36 -44.596 -24.424 31.654 1.00 0.00 N ATOM 82 CA TYR 36 -43.548 -23.824 30.847 1.00 0.00 C ATOM 83 C TYR 36 -42.211 -24.093 31.522 1.00 0.00 C ATOM 84 O TYR 36 -41.894 -23.505 32.553 1.00 0.00 O ATOM 85 N TRP 37 -41.421 -24.983 30.949 1.00 0.00 N ATOM 86 CA TRP 37 -40.143 -25.312 31.550 1.00 0.00 C ATOM 87 C TRP 37 -38.965 -24.900 30.671 1.00 0.00 C ATOM 88 O TRP 37 -39.153 -24.256 29.636 1.00 0.00 O ATOM 89 N VAL 38 -37.756 -25.258 31.103 1.00 0.00 N ATOM 90 CA VAL 38 -36.539 -24.908 30.388 1.00 0.00 C ATOM 91 C VAL 38 -35.737 -26.153 30.040 1.00 0.00 C ATOM 92 O VAL 38 -35.598 -27.051 30.865 1.00 0.00 O ATOM 93 N TYR 39 -35.231 -26.192 28.807 1.00 0.00 N ATOM 94 CA TYR 39 -34.361 -27.266 28.297 1.00 0.00 C ATOM 95 C TYR 39 -33.476 -26.740 27.175 1.00 0.00 C ATOM 96 O TYR 39 -33.967 -26.066 26.270 1.00 0.00 O ATOM 97 N GLN 40 -32.182 -27.052 27.230 1.00 0.00 N ATOM 98 CA GLN 40 -31.232 -26.640 26.186 1.00 0.00 C ATOM 99 C GLN 40 -31.216 -25.129 25.966 1.00 0.00 C ATOM 100 O GLN 40 -31.042 -24.659 24.838 1.00 0.00 O ATOM 101 N GLY 41 -31.422 -24.372 27.036 1.00 0.00 N ATOM 102 CA GLY 41 -31.468 -22.915 26.935 1.00 0.00 C ATOM 103 C GLY 41 -32.603 -22.358 26.086 1.00 0.00 C ATOM 104 O GLY 41 -32.578 -21.182 25.730 1.00 0.00 O ATOM 105 N LYS 42 -33.589 -23.195 25.750 1.00 0.00 N ATOM 106 CA LYS 42 -34.821 -22.748 25.067 1.00 0.00 C ATOM 107 C LYS 42 -36.029 -22.915 26.006 1.00 0.00 C ATOM 108 O LYS 42 -36.093 -23.867 26.784 1.00 0.00 O ATOM 109 N PRO 43 -36.982 -21.996 25.932 1.00 0.00 N ATOM 110 CA PRO 43 -38.160 -22.070 26.784 1.00 0.00 C ATOM 111 C PRO 43 -39.181 -22.971 26.119 1.00 0.00 C ATOM 112 O PRO 43 -39.518 -22.762 24.958 1.00 0.00 O ATOM 113 N VAL 44 -39.678 -23.971 26.835 1.00 0.00 N ATOM 114 CA VAL 44 -40.571 -24.949 26.212 1.00 0.00 C ATOM 115 C VAL 44 -41.900 -25.031 26.910 1.00 0.00 C ATOM 116 O VAL 44 -42.027 -24.640 28.062 1.00 0.00 O ATOM 117 N MET 45 -42.892 -25.550 26.198 1.00 0.00 N ATOM 118 CA MET 45 -44.195 -25.823 26.789 1.00 0.00 C ATOM 119 C MET 45 -44.744 -27.193 26.383 1.00 0.00 C ATOM 120 O MET 45 -44.567 -27.647 25.248 1.00 0.00 O ATOM 121 N PRO 46 -38.482 -16.457 21.752 1.00 0.00 N ATOM 122 CA PRO 46 -38.558 -15.024 22.073 1.00 0.00 C ATOM 123 C PRO 46 -39.259 -14.255 20.954 1.00 0.00 C ATOM 124 O PRO 46 -38.977 -14.484 19.774 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 124 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 74.98 55.0 60 88.2 68 ARMSMC SECONDARY STRUCTURE . . 66.53 55.9 34 100.0 34 ARMSMC SURFACE . . . . . . . . 81.11 54.0 50 89.3 56 ARMSMC BURIED . . . . . . . . 28.90 60.0 10 83.3 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 29 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 17 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 27 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 21 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 13 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 2 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 2 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.24 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.24 31 88.6 35 CRMSCA CRN = ALL/NP . . . . . 0.2657 CRMSCA SECONDARY STRUCTURE . . 7.92 17 100.0 17 CRMSCA SURFACE . . . . . . . . 8.43 26 89.7 29 CRMSCA BURIED . . . . . . . . 7.17 5 83.3 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.17 124 71.7 173 CRMSMC SECONDARY STRUCTURE . . 7.91 68 80.0 85 CRMSMC SURFACE . . . . . . . . 8.32 104 72.7 143 CRMSMC BURIED . . . . . . . . 7.28 20 66.7 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 156 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 136 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 84 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 127 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.17 124 41.9 296 CRMSALL SECONDARY STRUCTURE . . 7.91 68 44.7 152 CRMSALL SURFACE . . . . . . . . 8.32 104 42.8 243 CRMSALL BURIED . . . . . . . . 7.28 20 37.7 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.520 1.000 0.500 31 88.6 35 ERRCA SECONDARY STRUCTURE . . 7.324 1.000 0.500 17 100.0 17 ERRCA SURFACE . . . . . . . . 7.642 1.000 0.500 26 89.7 29 ERRCA BURIED . . . . . . . . 6.888 1.000 0.500 5 83.3 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.438 1.000 0.500 124 71.7 173 ERRMC SECONDARY STRUCTURE . . 7.281 1.000 0.500 68 80.0 85 ERRMC SURFACE . . . . . . . . 7.565 1.000 0.500 104 72.7 143 ERRMC BURIED . . . . . . . . 6.776 1.000 0.500 20 66.7 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 156 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 136 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 84 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 127 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.438 1.000 0.500 124 41.9 296 ERRALL SECONDARY STRUCTURE . . 7.281 1.000 0.500 68 44.7 152 ERRALL SURFACE . . . . . . . . 7.565 1.000 0.500 104 42.8 243 ERRALL BURIED . . . . . . . . 6.776 1.000 0.500 20 37.7 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 3 10 22 31 35 DISTCA CA (P) 0.00 2.86 8.57 28.57 62.86 35 DISTCA CA (RMS) 0.00 1.73 2.36 3.84 6.26 DISTCA ALL (N) 0 4 13 37 91 124 296 DISTALL ALL (P) 0.00 1.35 4.39 12.50 30.74 296 DISTALL ALL (RMS) 0.00 1.79 2.33 3.72 6.30 DISTALL END of the results output