####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 88 ( 352), selected 88 , name T0548AL285_1 # Molecule2: number of CA atoms 95 ( 787), selected 88 , name T0548.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548AL285_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 69 35 - 106 4.81 6.88 LCS_AVERAGE: 60.67 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 29 46 - 74 1.81 7.29 LCS_AVERAGE: 21.36 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 83 - 101 0.90 7.20 LONGEST_CONTINUOUS_SEGMENT: 19 84 - 102 0.91 6.98 LCS_AVERAGE: 13.27 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 88 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT T 16 T 16 9 10 16 4 5 9 30 40 46 50 54 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT V 17 V 17 9 10 16 4 8 17 21 33 45 50 54 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT T 18 T 18 9 10 16 5 7 8 9 9 9 9 39 45 49 57 60 67 71 73 74 75 76 78 78 LCS_GDT D 19 D 19 9 10 16 5 7 8 9 9 10 11 14 28 33 48 51 67 71 73 74 75 76 78 78 LCS_GDT I 20 I 20 9 10 16 5 7 8 9 9 21 39 52 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT K 21 K 21 9 10 16 5 7 8 9 9 9 9 13 43 49 56 60 68 71 73 74 75 76 78 78 LCS_GDT D 22 D 22 9 10 16 4 7 8 9 9 9 9 10 11 11 23 29 32 35 37 41 62 74 78 78 LCS_GDT L 23 L 23 9 10 16 5 7 8 9 9 9 9 10 10 18 24 29 51 58 58 72 75 76 78 78 LCS_GDT T 24 T 24 9 10 16 4 7 8 9 9 11 16 26 41 55 63 66 69 71 73 74 75 76 78 78 LCS_GDT K 25 K 25 3 10 16 3 3 4 4 5 11 16 23 28 51 59 66 69 71 73 74 75 76 78 78 LCS_GDT L 26 L 26 3 4 16 0 3 3 4 7 12 17 36 51 58 62 66 69 71 73 74 75 76 78 78 LCS_GDT G 27 G 27 3 4 16 3 10 24 37 45 49 52 53 56 59 62 65 68 70 73 74 75 76 78 78 LCS_GDT A 28 A 28 3 7 16 3 3 3 15 21 36 41 47 55 57 58 59 62 64 66 68 72 74 76 77 LCS_GDT I 29 I 29 6 8 16 4 5 7 8 10 12 12 14 15 16 19 35 51 53 53 63 68 70 71 74 LCS_GDT Y 30 Y 30 6 8 16 4 5 7 8 10 12 12 14 15 16 33 49 57 59 64 66 68 70 73 76 LCS_GDT D 31 D 31 6 8 16 4 5 7 8 10 12 12 14 15 16 19 33 41 56 60 63 64 70 71 74 LCS_GDT K 32 K 32 6 8 17 4 5 7 8 10 12 12 14 15 16 19 33 41 56 60 63 64 68 71 74 LCS_GDT T 33 T 33 6 8 19 3 5 7 8 10 12 12 14 15 16 19 33 36 42 49 53 58 60 67 69 LCS_GDT K 34 K 34 6 8 19 3 5 7 8 10 12 12 14 25 27 33 35 51 56 60 66 67 70 71 74 LCS_GDT K 35 K 35 4 10 69 3 4 5 8 9 12 13 17 25 27 33 51 56 60 64 66 68 70 72 76 LCS_GDT Y 36 Y 36 9 10 69 4 7 9 13 34 38 43 50 52 58 61 62 65 68 72 72 74 75 76 77 LCS_GDT W 37 W 37 9 10 69 7 8 9 17 29 36 41 51 57 60 63 65 69 71 73 74 75 76 78 78 LCS_GDT V 38 V 38 9 10 69 7 8 9 13 24 34 44 53 56 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT Y 39 Y 39 9 10 69 7 8 9 10 10 11 12 15 23 25 36 54 60 68 73 74 75 76 78 78 LCS_GDT Q 40 Q 40 9 10 69 7 8 9 10 10 11 12 14 17 21 22 27 47 48 55 61 70 76 78 78 LCS_GDT G 41 G 41 9 10 69 7 8 9 10 11 17 23 28 35 40 44 50 53 57 60 72 75 76 78 78 LCS_GDT K 42 K 42 9 10 69 7 8 9 16 23 32 38 51 52 54 60 66 69 71 73 74 75 76 78 78 LCS_GDT P 43 P 43 9 10 69 7 13 28 38 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT V 44 V 44 9 10 69 4 8 9 20 29 45 50 54 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT M 45 M 45 9 10 69 3 4 8 9 9 10 12 13 13 15 18 59 61 63 72 72 74 75 76 77 LCS_GDT P 46 P 46 9 29 69 4 15 30 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT D 47 D 47 9 29 69 4 13 30 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT Q 48 Q 48 16 29 69 4 5 9 39 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT F 49 F 49 17 29 69 11 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT T 50 T 50 17 29 69 11 18 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT F 51 F 51 17 29 69 11 18 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT E 52 E 52 17 29 69 11 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT L 53 L 53 17 29 69 11 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT L 54 L 54 17 29 69 11 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT D 55 D 55 17 29 69 11 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT F 56 F 56 17 29 69 11 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT L 57 L 57 17 29 69 11 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT H 58 H 58 17 29 69 11 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT Q 59 Q 59 17 29 69 11 21 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT L 60 L 60 17 29 69 9 18 30 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT T 61 T 61 17 29 69 4 21 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT H 62 H 62 17 29 69 11 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT L 63 L 63 17 29 69 11 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT S 64 S 64 17 29 69 11 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT F 65 F 65 17 29 69 8 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT S 66 S 66 14 29 69 8 15 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT K 67 K 67 14 29 69 8 19 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT M 68 M 68 14 29 69 7 17 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT K 69 K 69 14 29 69 8 14 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT A 70 A 70 14 29 69 8 13 25 37 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT L 71 L 71 14 29 69 8 13 22 37 44 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT L 72 L 72 14 29 69 8 13 22 37 44 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT E 73 E 73 14 29 69 8 13 22 37 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT R 74 R 74 14 29 69 6 13 21 28 44 46 51 55 56 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT P 78 P 78 4 25 69 3 3 9 9 13 19 28 45 55 60 63 65 69 71 73 74 75 76 78 78 LCS_GDT Y 79 Y 79 4 25 69 3 5 9 10 18 35 49 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT Y 80 Y 80 6 25 69 3 4 21 38 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT M 81 M 81 14 25 69 3 7 26 35 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT L 82 L 82 17 25 69 3 9 15 31 40 45 50 55 56 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT N 83 N 83 19 25 69 3 7 15 31 40 46 51 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT R 84 R 84 19 25 69 9 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT D 85 D 85 19 25 69 7 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT R 86 R 86 19 25 69 9 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT T 87 T 87 19 25 69 11 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT L 88 L 88 19 25 69 11 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT K 89 K 89 19 25 69 11 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT N 90 N 90 19 25 69 11 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT I 91 I 91 19 25 69 11 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT T 92 T 92 19 25 69 10 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT E 93 E 93 19 25 69 7 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT T 94 T 94 19 25 69 7 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT C 95 C 95 19 25 69 10 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT K 96 K 96 19 25 69 11 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT A 97 A 97 19 25 69 11 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT C 98 C 98 19 25 69 11 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT A 99 A 99 19 25 69 8 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT Q 100 Q 100 19 25 69 8 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT V 101 V 101 19 25 69 11 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT N 102 N 102 19 25 69 3 14 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT A 103 A 103 3 25 69 3 3 4 8 36 48 52 55 56 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT S 104 S 104 3 12 69 3 3 4 16 27 36 44 53 56 60 63 66 69 71 73 74 75 76 78 78 LCS_GDT K 105 K 105 3 5 69 3 3 4 8 11 17 37 47 55 59 63 66 69 71 73 74 75 76 78 78 LCS_GDT S 106 S 106 3 5 69 0 3 4 6 10 12 23 28 44 51 59 66 69 71 73 74 75 76 78 78 LCS_AVERAGE LCS_A: 31.77 ( 13.27 21.36 60.67 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 22 31 40 45 49 52 55 57 60 63 66 69 71 73 74 75 76 78 78 GDT PERCENT_AT 11.58 23.16 32.63 42.11 47.37 51.58 54.74 57.89 60.00 63.16 66.32 69.47 72.63 74.74 76.84 77.89 78.95 80.00 82.11 82.11 GDT RMS_LOCAL 0.25 0.60 0.87 1.23 1.43 1.62 1.82 2.09 2.38 2.62 2.86 3.35 3.49 3.67 3.82 3.98 4.09 4.31 4.68 4.68 GDT RMS_ALL_AT 8.97 6.98 6.98 7.00 7.11 7.12 7.18 7.07 6.73 6.79 6.75 6.96 6.89 6.86 6.89 6.96 6.99 7.08 7.24 7.24 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA T 16 T 16 5.651 3 0.399 0.399 6.201 21.548 12.313 LGA V 17 V 17 6.698 3 0.197 0.197 8.093 10.595 6.054 LGA T 18 T 18 11.216 3 0.156 0.156 12.157 0.119 0.068 LGA D 19 D 19 10.552 4 0.023 0.023 10.868 0.119 0.060 LGA I 20 I 20 7.591 4 0.026 0.026 9.246 3.690 1.845 LGA K 21 K 21 11.741 5 0.023 0.023 13.406 0.000 0.000 LGA D 22 D 22 15.217 4 0.021 0.021 15.581 0.000 0.000 LGA L 23 L 23 12.438 4 0.254 0.254 13.028 0.000 0.000 LGA T 24 T 24 10.448 3 0.146 0.146 10.888 0.357 0.204 LGA K 25 K 25 10.676 5 0.650 0.650 10.723 0.476 0.212 LGA L 26 L 26 7.103 4 0.654 0.654 8.134 11.548 5.774 LGA G 27 G 27 3.866 0 0.572 0.572 4.263 43.452 43.452 LGA A 28 A 28 6.770 1 0.073 0.073 7.417 16.190 12.952 LGA I 29 I 29 10.404 4 0.232 0.232 10.404 0.595 0.298 LGA Y 30 Y 30 10.291 8 0.303 0.303 11.554 0.000 0.000 LGA D 31 D 31 14.485 4 0.176 0.176 14.804 0.000 0.000 LGA K 32 K 32 16.005 5 0.549 0.549 19.996 0.000 0.000 LGA T 33 T 33 19.322 3 0.066 0.066 20.020 0.000 0.000 LGA K 34 K 34 15.816 5 0.657 0.657 16.691 0.000 0.000 LGA K 35 K 35 14.655 5 0.623 0.623 15.040 0.000 0.000 LGA Y 36 Y 36 8.612 8 0.194 0.194 10.401 8.571 2.857 LGA W 37 W 37 8.047 10 0.124 0.124 8.047 12.857 3.673 LGA V 38 V 38 8.179 3 0.013 0.013 12.457 2.976 1.701 LGA Y 39 Y 39 13.928 8 0.010 0.010 14.404 0.000 0.000 LGA Q 40 Q 40 17.709 5 0.036 0.036 17.709 0.000 0.000 LGA G 41 G 41 14.908 0 0.025 0.025 15.566 0.000 0.000 LGA K 42 K 42 9.011 5 0.030 0.030 11.258 6.190 2.751 LGA P 43 P 43 2.520 3 0.063 0.063 4.739 52.619 30.068 LGA V 44 V 44 5.998 3 0.114 0.114 7.665 18.929 10.816 LGA M 45 M 45 9.966 4 0.086 0.086 12.184 1.905 0.952 LGA P 46 P 46 2.021 3 0.117 0.117 2.046 68.810 39.320 LGA D 47 D 47 1.969 4 0.042 0.042 2.030 70.833 35.417 LGA Q 48 Q 48 2.335 5 0.170 0.170 2.386 66.786 29.683 LGA F 49 F 49 0.549 7 0.175 0.175 0.750 90.476 32.900 LGA T 50 T 50 1.182 3 0.031 0.031 1.182 83.690 47.823 LGA F 51 F 51 1.153 7 0.023 0.023 1.212 85.952 31.255 LGA E 52 E 52 1.017 5 0.026 0.026 1.170 85.952 38.201 LGA L 53 L 53 1.160 4 0.027 0.027 1.541 81.548 40.774 LGA L 54 L 54 1.031 4 0.033 0.033 1.031 88.214 44.107 LGA D 55 D 55 1.180 4 0.047 0.047 1.651 79.405 39.702 LGA F 56 F 56 2.286 7 0.033 0.033 2.640 64.881 23.593 LGA L 57 L 57 2.318 4 0.112 0.112 2.318 64.762 32.381 LGA H 58 H 58 1.591 6 0.025 0.025 2.070 70.833 28.333 LGA Q 59 Q 59 2.473 5 0.129 0.129 2.712 60.952 27.090 LGA L 60 L 60 3.180 4 0.166 0.166 3.180 61.190 30.595 LGA T 61 T 61 1.994 3 0.259 0.259 2.326 72.976 41.701 LGA H 62 H 62 0.667 6 0.113 0.113 1.151 88.214 35.286 LGA L 63 L 63 0.905 4 0.020 0.020 0.905 90.476 45.238 LGA S 64 S 64 0.843 2 0.095 0.095 0.901 90.476 60.317 LGA F 65 F 65 0.758 7 0.039 0.039 0.872 92.857 33.766 LGA S 66 S 66 1.345 2 0.061 0.061 1.934 81.548 54.365 LGA K 67 K 67 0.716 5 0.094 0.094 1.713 86.071 38.254 LGA M 68 M 68 1.319 4 0.006 0.006 2.013 79.524 39.762 LGA K 69 K 69 1.436 5 0.060 0.060 2.143 75.119 33.386 LGA A 70 A 70 2.419 1 0.043 0.043 2.871 62.976 50.381 LGA L 71 L 71 3.017 4 0.101 0.101 3.039 53.571 26.786 LGA L 72 L 72 3.002 4 0.048 0.048 3.432 51.786 25.893 LGA E 73 E 73 2.890 5 0.024 0.024 3.672 51.905 23.069 LGA R 74 R 74 4.286 7 0.128 0.128 4.787 37.262 13.550 LGA P 78 P 78 5.550 3 0.084 0.084 5.550 25.000 14.286 LGA Y 79 Y 79 4.238 8 0.082 0.082 4.721 40.476 13.492 LGA Y 80 Y 80 2.656 8 0.166 0.166 3.209 63.214 21.071 LGA M 81 M 81 2.909 4 0.241 0.241 3.070 57.262 28.631 LGA L 82 L 82 4.455 4 0.011 0.011 4.455 38.690 19.345 LGA N 83 N 83 4.073 4 0.116 0.116 4.149 45.357 22.679 LGA R 84 R 84 1.999 7 0.098 0.098 2.745 71.071 25.844 LGA D 85 D 85 1.488 4 0.026 0.026 1.724 81.548 40.774 LGA R 86 R 86 0.949 7 0.016 0.016 1.238 90.595 32.944 LGA T 87 T 87 0.751 3 0.054 0.054 0.794 92.857 53.061 LGA L 88 L 88 0.613 4 0.020 0.020 0.749 90.476 45.238 LGA K 89 K 89 0.716 5 0.104 0.104 1.030 88.214 39.206 LGA N 90 N 90 0.645 4 0.034 0.034 1.120 90.595 45.298 LGA I 91 I 91 0.324 4 0.031 0.031 0.867 95.238 47.619 LGA T 92 T 92 1.044 3 0.096 0.096 1.295 83.690 47.823 LGA E 93 E 93 2.226 5 0.022 0.022 2.670 64.881 28.836 LGA T 94 T 94 2.165 3 0.025 0.025 2.165 68.810 39.320 LGA C 95 C 95 1.105 2 0.058 0.058 1.361 81.429 54.286 LGA K 96 K 96 1.359 5 0.102 0.102 1.359 85.952 38.201 LGA A 97 A 97 0.516 1 0.047 0.047 0.707 90.476 72.381 LGA C 98 C 98 0.591 2 0.089 0.089 0.892 90.476 60.317 LGA A 99 A 99 0.793 1 0.037 0.037 1.114 85.952 68.762 LGA Q 100 Q 100 1.438 5 0.218 0.218 1.838 79.286 35.238 LGA V 101 V 101 1.431 3 0.171 0.171 1.476 83.690 47.823 LGA N 102 N 102 1.363 4 0.659 0.659 1.725 79.405 39.702 LGA A 103 A 103 4.530 1 0.671 0.671 7.081 27.738 22.190 LGA S 104 S 104 7.046 2 0.398 0.398 7.187 16.190 10.794 LGA K 105 K 105 8.221 5 0.490 0.490 11.399 2.500 1.111 LGA S 106 S 106 10.592 2 0.564 0.564 10.592 2.262 1.508 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 88 352 352 100.00 722 352 48.75 95 SUMMARY(RMSD_GDC): 6.685 6.632 6.632 44.896 23.124 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 88 95 4.0 55 2.09 50.263 45.078 2.508 LGA_LOCAL RMSD: 2.093 Number of atoms: 55 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 7.072 Number of assigned atoms: 88 Std_ASGN_ATOMS RMSD: 6.685 Standard rmsd on all 88 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.710237 * X + -0.192127 * Y + 0.677237 * Z + 59.369766 Y_new = -0.614744 * X + 0.299479 * Y + 0.729659 * Z + -29.656849 Z_new = -0.343006 * X + -0.934558 * Y + 0.094592 * Z + 28.671833 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.713451 0.350115 -1.469924 [DEG: -40.8777 20.0601 -84.2204 ] ZXZ: 2.393438 1.476062 -2.789832 [DEG: 137.1339 84.5721 -159.8456 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548AL285_1 REMARK 2: T0548.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548AL285_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 88 95 4.0 55 2.09 45.078 6.68 REMARK ---------------------------------------------------------- MOLECULE T0548AL285_1 REMARK Aligment from pdb entry: 3l2tA ATOM 1 N THR 16 -41.698 -21.423 34.730 1.00 0.00 ATOM 2 CA THR 16 -41.970 -20.174 35.508 1.00 0.00 ATOM 3 C THR 16 -42.659 -19.133 34.625 1.00 0.00 ATOM 4 O THR 16 -43.890 -19.063 34.579 1.00 0.00 ATOM 5 N VAL 17 -41.855 -18.343 33.912 1.00 0.00 ATOM 6 CA VAL 17 -42.355 -17.352 32.940 1.00 0.00 ATOM 7 C VAL 17 -43.037 -17.987 31.706 1.00 0.00 ATOM 8 O VAL 17 -43.686 -17.296 30.916 1.00 0.00 ATOM 9 N THR 18 -42.880 -19.302 31.554 1.00 0.00 ATOM 10 CA THR 18 -43.536 -20.055 30.483 1.00 0.00 ATOM 11 C THR 18 -44.976 -20.424 30.835 1.00 0.00 ATOM 12 O THR 18 -45.779 -20.740 29.951 1.00 0.00 ATOM 13 N ASP 19 -45.294 -20.390 32.128 1.00 0.00 ATOM 14 CA ASP 19 -46.653 -20.631 32.582 1.00 0.00 ATOM 15 C ASP 19 -47.579 -19.613 31.906 1.00 0.00 ATOM 16 O ASP 19 -48.598 -19.989 31.316 1.00 0.00 ATOM 17 N ILE 20 -47.190 -18.336 31.957 1.00 0.00 ATOM 18 CA ILE 20 -47.986 -17.233 31.390 1.00 0.00 ATOM 19 C ILE 20 -48.457 -17.505 29.968 1.00 0.00 ATOM 20 O ILE 20 -49.592 -17.174 29.601 1.00 0.00 ATOM 21 N LYS 21 -47.570 -18.125 29.195 1.00 0.00 ATOM 22 CA LYS 21 -47.682 -18.237 27.744 1.00 0.00 ATOM 23 C LYS 21 -48.824 -19.149 27.274 1.00 0.00 ATOM 24 O LYS 21 -49.613 -18.772 26.395 1.00 0.00 ATOM 25 N ASP 22 -48.903 -20.343 27.862 1.00 0.00 ATOM 26 CA ASP 22 -49.972 -21.304 27.572 1.00 0.00 ATOM 27 C ASP 22 -51.317 -20.734 28.018 1.00 0.00 ATOM 28 O ASP 22 -52.342 -20.941 27.363 1.00 0.00 ATOM 29 N LEU 23 -51.281 -19.993 29.127 1.00 0.00 ATOM 30 CA LEU 23 -52.426 -19.242 29.636 1.00 0.00 ATOM 31 C LEU 23 -52.853 -18.097 28.698 1.00 0.00 ATOM 32 O LEU 23 -53.797 -17.362 28.997 1.00 0.00 ATOM 33 N THR 24 -52.150 -17.948 27.577 1.00 0.00 ATOM 34 CA THR 24 -52.532 -16.998 26.533 1.00 0.00 ATOM 35 C THR 24 -52.023 -15.571 26.655 1.00 0.00 ATOM 36 O THR 24 -52.104 -14.817 25.688 1.00 0.00 ATOM 37 N LYS 25 -51.515 -15.196 27.832 1.00 0.00 ATOM 38 CA LYS 25 -50.938 -13.861 28.066 1.00 0.00 ATOM 39 C LYS 25 -49.722 -13.552 27.163 1.00 0.00 ATOM 40 O LYS 25 -48.966 -14.466 26.788 1.00 0.00 ATOM 41 N LEU 26 -49.526 -12.273 26.829 1.00 0.00 ATOM 42 CA LEU 26 -48.396 -11.847 25.981 1.00 0.00 ATOM 43 C LEU 26 -47.096 -11.648 26.773 1.00 0.00 ATOM 44 O LEU 26 -47.140 -11.173 27.911 1.00 0.00 ATOM 45 N GLY 27 -45.951 -11.988 26.163 1.00 0.00 ATOM 46 CA GLY 27 -44.622 -11.651 26.725 1.00 0.00 ATOM 47 C GLY 27 -43.675 -11.053 25.675 1.00 0.00 ATOM 48 O GLY 27 -43.698 -11.498 24.532 1.00 0.00 ATOM 49 N ALA 28 -42.867 -10.054 26.062 1.00 0.00 ATOM 50 CA ALA 28 -41.842 -9.462 25.173 1.00 0.00 ATOM 51 C ALA 28 -40.972 -10.576 24.584 1.00 0.00 ATOM 52 O ALA 28 -40.627 -11.522 25.292 1.00 0.00 ATOM 53 N ILE 29 -40.614 -10.450 23.300 1.00 0.00 ATOM 54 CA ILE 29 -40.192 -11.595 22.483 1.00 0.00 ATOM 55 C ILE 29 -41.480 -12.322 22.136 1.00 0.00 ATOM 56 O ILE 29 -42.518 -11.683 21.942 1.00 0.00 ATOM 57 N TYR 30 -41.433 -13.646 22.064 1.00 0.00 ATOM 58 CA TYR 30 -42.645 -14.480 21.977 1.00 0.00 ATOM 59 C TYR 30 -43.825 -13.888 21.213 1.00 0.00 ATOM 60 O TYR 30 -44.856 -13.601 21.816 1.00 0.00 ATOM 61 N ASP 31 -43.688 -13.723 19.883 1.00 0.00 ATOM 62 CA ASP 31 -44.796 -13.185 19.102 1.00 0.00 ATOM 63 C ASP 31 -46.065 -13.977 19.330 1.00 0.00 ATOM 64 O ASP 31 -46.006 -15.202 19.421 1.00 0.00 ATOM 65 N LYS 32 -47.200 -13.290 19.442 1.00 0.00 ATOM 66 CA LYS 32 -48.493 -13.968 19.367 1.00 0.00 ATOM 67 C LYS 32 -48.811 -14.193 17.884 1.00 0.00 ATOM 68 O LYS 32 -48.069 -13.720 17.021 1.00 0.00 ATOM 69 N THR 33 -49.900 -14.908 17.599 1.00 0.00 ATOM 70 CA THR 33 -50.224 -15.432 16.252 1.00 0.00 ATOM 71 C THR 33 -49.680 -16.853 16.145 1.00 0.00 ATOM 72 O THR 33 -50.040 -17.607 15.238 1.00 0.00 ATOM 73 N LYS 34 -48.806 -17.198 17.085 1.00 0.00 ATOM 74 CA LYS 34 -48.212 -18.518 17.149 1.00 0.00 ATOM 75 C LYS 34 -48.795 -19.258 18.324 1.00 0.00 ATOM 76 O LYS 34 -48.817 -18.727 19.430 1.00 0.00 ATOM 77 N LYS 35 -49.288 -20.470 18.088 1.00 0.00 ATOM 78 CA LYS 35 -49.858 -21.263 19.189 1.00 0.00 ATOM 79 C LYS 35 -48.762 -21.980 19.986 1.00 0.00 ATOM 80 O LYS 35 -47.928 -22.711 19.428 1.00 0.00 ATOM 81 N TYR 36 -48.763 -21.710 21.291 1.00 0.00 ATOM 82 CA TYR 36 -47.845 -22.305 22.245 1.00 0.00 ATOM 83 C TYR 36 -48.601 -23.359 23.042 1.00 0.00 ATOM 84 O TYR 36 -49.431 -23.037 23.888 1.00 0.00 ATOM 85 N TRP 37 -48.322 -24.623 22.776 1.00 0.00 ATOM 86 CA TRP 37 -49.022 -25.682 23.476 1.00 0.00 ATOM 87 C TRP 37 -48.091 -26.507 24.361 1.00 0.00 ATOM 88 O TRP 37 -46.912 -26.176 24.507 1.00 0.00 ATOM 89 N VAL 38 -48.635 -27.565 24.961 1.00 0.00 ATOM 90 CA VAL 38 -47.880 -28.426 25.858 1.00 0.00 ATOM 91 C VAL 38 -47.917 -29.871 25.383 1.00 0.00 ATOM 92 O VAL 38 -48.965 -30.362 24.975 1.00 0.00 ATOM 93 N TYR 39 -46.758 -30.528 25.432 1.00 0.00 ATOM 94 CA TYR 39 -46.594 -31.953 25.095 1.00 0.00 ATOM 95 C TYR 39 -45.391 -32.532 25.826 1.00 0.00 ATOM 96 O TYR 39 -44.320 -31.925 25.826 1.00 0.00 ATOM 97 N GLN 40 -45.563 -33.702 26.439 1.00 0.00 ATOM 98 CA GLN 40 -44.468 -34.386 27.144 1.00 0.00 ATOM 99 C GLN 40 -43.831 -33.518 28.226 1.00 0.00 ATOM 100 O GLN 40 -42.621 -33.589 28.458 1.00 0.00 ATOM 101 N GLY 41 -44.638 -32.684 28.869 1.00 0.00 ATOM 102 CA GLY 41 -44.129 -31.778 29.895 1.00 0.00 ATOM 103 C GLY 41 -43.130 -30.737 29.406 1.00 0.00 ATOM 104 O GLY 41 -42.457 -30.109 30.219 1.00 0.00 ATOM 105 N LYS 42 -43.020 -30.562 28.086 1.00 0.00 ATOM 106 CA LYS 42 -42.209 -29.482 27.487 1.00 0.00 ATOM 107 C LYS 42 -43.127 -28.471 26.776 1.00 0.00 ATOM 108 O LYS 42 -44.140 -28.850 26.188 1.00 0.00 ATOM 109 N PRO 43 -42.774 -27.194 26.827 1.00 0.00 ATOM 110 CA PRO 43 -43.584 -26.168 26.187 1.00 0.00 ATOM 111 C PRO 43 -43.176 -26.070 24.731 1.00 0.00 ATOM 112 O PRO 43 -41.995 -25.915 24.435 1.00 0.00 ATOM 113 N VAL 44 -44.132 -26.158 23.816 1.00 0.00 ATOM 114 CA VAL 44 -43.790 -26.197 22.394 1.00 0.00 ATOM 115 C VAL 44 -44.450 -25.090 21.619 1.00 0.00 ATOM 116 O VAL 44 -45.441 -24.525 22.059 1.00 0.00 ATOM 117 N MET 45 -43.890 -24.790 20.454 1.00 0.00 ATOM 118 CA MET 45 -44.502 -23.843 19.535 1.00 0.00 ATOM 119 C MET 45 -44.487 -24.341 18.088 1.00 0.00 ATOM 120 O MET 45 -43.531 -24.981 17.637 1.00 0.00 ATOM 121 N PRO 46 -37.164 -23.491 29.114 1.00 0.00 ATOM 122 CA PRO 46 -37.066 -22.492 30.189 1.00 0.00 ATOM 123 C PRO 46 -35.759 -21.709 30.081 1.00 0.00 ATOM 124 O PRO 46 -34.699 -22.301 29.855 1.00 0.00 ATOM 125 N ASP 47 -35.835 -20.393 30.237 1.00 0.00 ATOM 126 CA ASP 47 -34.649 -19.535 30.254 1.00 0.00 ATOM 127 C ASP 47 -33.484 -20.171 31.011 1.00 0.00 ATOM 128 O ASP 47 -32.357 -20.154 30.533 1.00 0.00 ATOM 129 N GLN 48 -33.756 -20.748 32.180 1.00 0.00 ATOM 130 CA GLN 48 -32.687 -21.292 33.026 1.00 0.00 ATOM 131 C GLN 48 -31.904 -22.440 32.365 1.00 0.00 ATOM 132 O GLN 48 -30.877 -22.866 32.874 1.00 0.00 ATOM 133 N PHE 49 -32.391 -22.927 31.231 1.00 0.00 ATOM 134 CA PHE 49 -31.791 -24.075 30.561 1.00 0.00 ATOM 135 C PHE 49 -30.976 -23.719 29.317 1.00 0.00 ATOM 136 O PHE 49 -30.166 -24.510 28.838 1.00 0.00 ATOM 137 N THR 50 -31.212 -22.523 28.799 1.00 0.00 ATOM 138 CA THR 50 -30.747 -22.131 27.490 1.00 0.00 ATOM 139 C THR 50 -29.228 -22.026 27.383 1.00 0.00 ATOM 140 O THR 50 -28.639 -22.445 26.387 1.00 0.00 ATOM 141 N PHE 51 -28.588 -21.477 28.406 1.00 0.00 ATOM 142 CA PHE 51 -27.144 -21.374 28.380 1.00 0.00 ATOM 143 C PHE 51 -26.545 -22.775 28.275 1.00 0.00 ATOM 144 O PHE 51 -25.681 -23.005 27.456 1.00 0.00 ATOM 145 N GLU 52 -27.028 -23.707 29.093 1.00 0.00 ATOM 146 CA GLU 52 -26.600 -25.124 29.052 1.00 0.00 ATOM 147 C GLU 52 -26.826 -25.703 27.660 1.00 0.00 ATOM 148 O GLU 52 -25.981 -26.433 27.158 1.00 0.00 ATOM 149 N LEU 53 -27.955 -25.357 27.038 1.00 0.00 ATOM 150 CA LEU 53 -28.282 -25.822 25.687 1.00 0.00 ATOM 151 C LEU 53 -27.301 -25.293 24.640 1.00 0.00 ATOM 152 O LEU 53 -26.752 -26.083 23.856 1.00 0.00 ATOM 153 N LEU 54 -27.072 -23.979 24.651 1.00 0.00 ATOM 154 CA LEU 54 -26.207 -23.314 23.677 1.00 0.00 ATOM 155 C LEU 54 -24.798 -23.890 23.775 1.00 0.00 ATOM 156 O LEU 54 -24.111 -24.071 22.776 1.00 0.00 ATOM 157 N ASP 55 -24.391 -24.205 24.994 1.00 0.00 ATOM 158 CA ASP 55 -23.073 -24.711 25.239 1.00 0.00 ATOM 159 C ASP 55 -22.929 -26.084 24.648 1.00 0.00 ATOM 160 O ASP 55 -21.886 -26.424 24.109 1.00 0.00 ATOM 161 N PHE 56 -23.982 -26.882 24.765 1.00 0.00 ATOM 162 CA PHE 56 -23.937 -28.267 24.317 1.00 0.00 ATOM 163 C PHE 56 -23.767 -28.290 22.820 1.00 0.00 ATOM 164 O PHE 56 -22.938 -29.057 22.294 1.00 0.00 ATOM 165 N LEU 57 -24.548 -27.434 22.155 1.00 0.00 ATOM 166 CA LEU 57 -24.532 -27.345 20.708 1.00 0.00 ATOM 167 C LEU 57 -23.158 -26.897 20.319 1.00 0.00 ATOM 168 O LEU 57 -22.473 -27.587 19.581 1.00 0.00 ATOM 169 N HIS 58 -22.726 -25.770 20.865 1.00 0.00 ATOM 170 CA HIS 58 -21.411 -25.255 20.548 1.00 0.00 ATOM 171 C HIS 58 -20.276 -26.266 20.742 1.00 0.00 ATOM 172 O HIS 58 -19.362 -26.353 19.920 1.00 0.00 ATOM 173 N GLN 59 -20.318 -27.034 21.809 1.00 0.00 ATOM 174 CA GLN 59 -19.167 -27.861 22.103 1.00 0.00 ATOM 175 C GLN 59 -19.004 -29.075 21.200 1.00 0.00 ATOM 176 O GLN 59 -17.928 -29.715 21.218 1.00 0.00 ATOM 177 N LEU 60 -20.053 -29.405 20.420 1.00 0.00 ATOM 178 CA LEU 60 -19.990 -30.592 19.547 1.00 0.00 ATOM 179 C LEU 60 -18.779 -30.484 18.665 1.00 0.00 ATOM 180 O LEU 60 -17.993 -31.412 18.623 1.00 0.00 ATOM 181 N THR 61 -18.593 -29.330 18.023 1.00 0.00 ATOM 182 CA THR 61 -17.373 -29.081 17.253 1.00 0.00 ATOM 183 C THR 61 -16.822 -27.662 17.385 1.00 0.00 ATOM 184 O THR 61 -16.071 -27.212 16.518 1.00 0.00 ATOM 185 N HIS 62 -17.196 -26.958 18.456 1.00 0.00 ATOM 186 CA HIS 62 -16.758 -25.568 18.683 1.00 0.00 ATOM 187 C HIS 62 -16.990 -24.718 17.457 1.00 0.00 ATOM 188 O HIS 62 -16.079 -24.013 16.977 1.00 0.00 ATOM 189 N LEU 63 -18.224 -24.820 16.957 1.00 0.00 ATOM 190 CA LEU 63 -18.681 -24.060 15.799 1.00 0.00 ATOM 191 C LEU 63 -18.956 -22.593 16.133 1.00 0.00 ATOM 192 O LEU 63 -19.316 -22.241 17.276 1.00 0.00 ATOM 193 N SER 64 -18.780 -21.755 15.117 1.00 0.00 ATOM 194 CA SER 64 -19.099 -20.324 15.181 1.00 0.00 ATOM 195 C SER 64 -20.588 -20.025 15.266 1.00 0.00 ATOM 196 O SER 64 -21.378 -20.890 15.647 1.00 0.00 ATOM 197 N PHE 65 -20.983 -18.806 14.901 1.00 0.00 ATOM 198 CA PHE 65 -22.357 -18.357 15.157 1.00 0.00 ATOM 199 C PHE 65 -23.384 -19.200 14.421 1.00 0.00 ATOM 200 O PHE 65 -24.149 -19.912 15.054 1.00 0.00 ATOM 201 N SER 66 -23.383 -19.136 13.090 1.00 0.00 ATOM 202 CA SER 66 -24.431 -19.773 12.305 1.00 0.00 ATOM 203 C SER 66 -24.423 -21.299 12.435 1.00 0.00 ATOM 204 O SER 66 -25.475 -21.942 12.622 1.00 0.00 ATOM 205 N LYS 67 -23.240 -21.888 12.382 1.00 0.00 ATOM 206 CA LYS 67 -23.195 -23.337 12.494 1.00 0.00 ATOM 207 C LYS 67 -23.698 -23.815 13.868 1.00 0.00 ATOM 208 O LYS 67 -24.289 -24.896 13.972 1.00 0.00 ATOM 209 N MET 68 -23.503 -23.011 14.909 1.00 0.00 ATOM 210 CA MET 68 -24.043 -23.362 16.227 1.00 0.00 ATOM 211 C MET 68 -25.549 -23.156 16.255 1.00 0.00 ATOM 212 O MET 68 -26.299 -24.027 16.699 1.00 0.00 ATOM 213 N LYS 69 -25.992 -22.001 15.784 1.00 0.00 ATOM 214 CA LYS 69 -27.414 -21.756 15.739 1.00 0.00 ATOM 215 C LYS 69 -28.173 -22.842 14.925 1.00 0.00 ATOM 216 O LYS 69 -29.236 -23.306 15.340 1.00 0.00 ATOM 217 N ALA 70 -27.619 -23.255 13.786 1.00 0.00 ATOM 218 CA ALA 70 -28.275 -24.286 12.971 1.00 0.00 ATOM 219 C ALA 70 -28.562 -25.596 13.691 1.00 0.00 ATOM 220 O ALA 70 -29.580 -26.228 13.407 1.00 0.00 ATOM 221 N LEU 71 -27.685 -26.005 14.611 1.00 0.00 ATOM 222 CA LEU 71 -27.965 -27.190 15.401 1.00 0.00 ATOM 223 C LEU 71 -29.119 -26.866 16.301 1.00 0.00 ATOM 224 O LEU 71 -30.132 -27.551 16.284 1.00 0.00 ATOM 225 N LEU 72 -28.976 -25.805 17.081 1.00 0.00 ATOM 226 CA LEU 72 -29.967 -25.471 18.102 1.00 0.00 ATOM 227 C LEU 72 -31.345 -25.360 17.459 1.00 0.00 ATOM 228 O LEU 72 -32.330 -25.870 17.990 1.00 0.00 ATOM 229 N GLU 73 -31.395 -24.737 16.286 1.00 0.00 ATOM 230 CA GLU 73 -32.644 -24.542 15.574 1.00 0.00 ATOM 231 C GLU 73 -33.332 -25.865 15.248 1.00 0.00 ATOM 232 O GLU 73 -34.555 -25.931 15.249 1.00 0.00 ATOM 233 N ARG 74 -32.574 -26.917 14.975 1.00 0.00 ATOM 234 CA ARG 74 -33.213 -28.215 14.807 1.00 0.00 ATOM 235 C ARG 74 -34.251 -28.553 15.862 1.00 0.00 ATOM 236 O ARG 74 -35.325 -29.041 15.538 1.00 0.00 ATOM 237 N PRO 78 -33.934 -28.274 17.119 1.00 0.00 ATOM 238 CA PRO 78 -34.786 -28.708 18.204 1.00 0.00 ATOM 239 C PRO 78 -35.519 -27.596 18.895 1.00 0.00 ATOM 240 O PRO 78 -36.663 -27.801 19.325 1.00 0.00 ATOM 241 N TYR 79 -34.889 -26.434 19.027 1.00 0.00 ATOM 242 CA TYR 79 -35.484 -25.412 19.880 1.00 0.00 ATOM 243 C TYR 79 -35.865 -24.145 19.197 1.00 0.00 ATOM 244 O TYR 79 -35.473 -23.894 18.068 1.00 0.00 ATOM 245 N TYR 80 -36.679 -23.365 19.889 1.00 0.00 ATOM 246 CA TYR 80 -36.848 -21.965 19.547 1.00 0.00 ATOM 247 C TYR 80 -36.958 -21.100 20.804 1.00 0.00 ATOM 248 O TYR 80 -37.462 -21.555 21.828 1.00 0.00 ATOM 249 N MET 81 -36.441 -19.880 20.721 1.00 0.00 ATOM 250 CA MET 81 -36.701 -18.861 21.711 1.00 0.00 ATOM 251 C MET 81 -36.282 -17.491 21.176 1.00 0.00 ATOM 252 O MET 81 -35.527 -17.416 20.192 1.00 0.00 ATOM 253 N LEU 82 -36.767 -16.397 21.801 1.00 0.00 ATOM 254 CA LEU 82 -36.469 -15.054 21.323 1.00 0.00 ATOM 255 C LEU 82 -34.989 -14.786 21.332 1.00 0.00 ATOM 256 O LEU 82 -34.326 -15.040 22.348 1.00 0.00 ATOM 257 N ASN 83 -34.495 -14.299 20.191 1.00 0.00 ATOM 258 CA ASN 83 -33.121 -13.821 20.038 1.00 0.00 ATOM 259 C ASN 83 -32.112 -14.901 20.410 1.00 0.00 ATOM 260 O ASN 83 -31.312 -14.753 21.339 1.00 0.00 ATOM 261 N ARG 84 -32.172 -15.999 19.675 1.00 0.00 ATOM 262 CA ARG 84 -31.269 -17.104 19.863 1.00 0.00 ATOM 263 C ARG 84 -29.830 -16.721 19.625 1.00 0.00 ATOM 264 O ARG 84 -28.949 -17.041 20.430 1.00 0.00 ATOM 265 N ASP 85 -29.563 -16.011 18.542 1.00 0.00 ATOM 266 CA ASP 85 -28.158 -15.698 18.267 1.00 0.00 ATOM 267 C ASP 85 -27.517 -14.870 19.378 1.00 0.00 ATOM 268 O ASP 85 -26.335 -15.068 19.661 1.00 0.00 ATOM 269 N ARG 86 -28.298 -13.999 20.041 1.00 0.00 ATOM 270 CA ARG 86 -27.755 -13.187 21.150 1.00 0.00 ATOM 271 C ARG 86 -27.138 -14.113 22.209 1.00 0.00 ATOM 272 O ARG 86 -25.984 -13.929 22.621 1.00 0.00 ATOM 273 N THR 87 -27.876 -15.144 22.596 1.00 0.00 ATOM 274 CA THR 87 -27.320 -16.147 23.491 1.00 0.00 ATOM 275 C THR 87 -26.174 -16.935 22.861 1.00 0.00 ATOM 276 O THR 87 -25.240 -17.314 23.574 1.00 0.00 ATOM 277 N LEU 88 -26.226 -17.186 21.548 1.00 0.00 ATOM 278 CA LEU 88 -25.142 -17.933 20.913 1.00 0.00 ATOM 279 C LEU 88 -23.868 -17.109 20.980 1.00 0.00 ATOM 280 O LEU 88 -22.795 -17.614 21.295 1.00 0.00 ATOM 281 N LYS 89 -23.997 -15.820 20.718 1.00 0.00 ATOM 282 CA LYS 89 -22.820 -14.963 20.684 1.00 0.00 ATOM 283 C LYS 89 -22.263 -14.798 22.080 1.00 0.00 ATOM 284 O LYS 89 -21.064 -14.720 22.244 1.00 0.00 ATOM 285 N ASN 90 -23.133 -14.764 23.090 1.00 0.00 ATOM 286 CA ASN 90 -22.663 -14.626 24.479 1.00 0.00 ATOM 287 C ASN 90 -21.726 -15.782 24.794 1.00 0.00 ATOM 288 O ASN 90 -20.681 -15.577 25.424 1.00 0.00 ATOM 289 N ILE 91 -22.085 -16.978 24.321 1.00 0.00 ATOM 290 CA ILE 91 -21.241 -18.140 24.504 1.00 0.00 ATOM 291 C ILE 91 -19.917 -18.009 23.800 1.00 0.00 ATOM 292 O ILE 91 -18.869 -18.118 24.443 1.00 0.00 ATOM 293 N THR 92 -19.952 -17.747 22.493 1.00 0.00 ATOM 294 CA THR 92 -18.736 -17.661 21.699 1.00 0.00 ATOM 295 C THR 92 -17.685 -16.729 22.286 1.00 0.00 ATOM 296 O THR 92 -16.498 -16.969 22.098 1.00 0.00 ATOM 297 N GLU 93 -18.104 -15.689 23.003 1.00 0.00 ATOM 298 CA GLU 93 -17.168 -14.743 23.592 1.00 0.00 ATOM 299 C GLU 93 -16.550 -15.249 24.882 1.00 0.00 ATOM 300 O GLU 93 -15.559 -14.691 25.345 1.00 0.00 ATOM 301 N THR 94 -17.136 -16.296 25.460 1.00 0.00 ATOM 302 CA THR 94 -16.630 -16.909 26.698 1.00 0.00 ATOM 303 C THR 94 -15.923 -18.256 26.487 1.00 0.00 ATOM 304 O THR 94 -15.502 -18.885 27.470 1.00 0.00 ATOM 305 N CYS 95 -15.816 -18.720 25.235 1.00 0.00 ATOM 306 CA CYS 95 -15.143 -19.987 24.958 1.00 0.00 ATOM 307 C CYS 95 -13.654 -19.725 24.852 1.00 0.00 ATOM 308 O CYS 95 -13.172 -19.236 23.842 1.00 0.00 ATOM 309 N LYS 96 -12.915 -20.035 25.904 1.00 0.00 ATOM 310 CA LYS 96 -11.484 -19.769 25.877 1.00 0.00 ATOM 311 C LYS 96 -10.856 -20.392 24.612 1.00 0.00 ATOM 312 O LYS 96 -10.110 -19.721 23.907 1.00 0.00 ATOM 313 N ALA 97 -11.216 -21.642 24.297 1.00 0.00 ATOM 314 CA ALA 97 -10.585 -22.379 23.201 1.00 0.00 ATOM 315 C ALA 97 -10.852 -21.798 21.816 1.00 0.00 ATOM 316 O ALA 97 -9.934 -21.676 20.973 1.00 0.00 ATOM 317 N CYS 98 -12.115 -21.470 21.558 1.00 0.00 ATOM 318 CA CYS 98 -12.422 -20.764 20.319 1.00 0.00 ATOM 319 C CYS 98 -11.591 -19.487 20.168 1.00 0.00 ATOM 320 O CYS 98 -10.929 -19.324 19.147 1.00 0.00 ATOM 321 N ALA 99 -11.553 -18.634 21.197 1.00 0.00 ATOM 322 CA ALA 99 -10.855 -17.356 21.048 1.00 0.00 ATOM 323 C ALA 99 -9.360 -17.506 20.798 1.00 0.00 ATOM 324 O ALA 99 -8.770 -16.726 20.046 1.00 0.00 ATOM 325 N GLN 100 -8.734 -18.483 21.435 1.00 0.00 ATOM 326 CA GLN 100 -7.287 -18.604 21.296 1.00 0.00 ATOM 327 C GLN 100 -6.895 -19.486 20.116 1.00 0.00 ATOM 328 O GLN 100 -5.710 -19.551 19.780 1.00 0.00 ATOM 329 N VAL 101 -7.884 -20.135 19.484 1.00 0.00 ATOM 330 CA VAL 101 -7.599 -21.055 18.366 1.00 0.00 ATOM 331 C VAL 101 -8.023 -20.557 17.002 1.00 0.00 ATOM 332 O VAL 101 -7.282 -20.715 16.058 1.00 0.00 ATOM 333 N ASN 102 -9.201 -19.960 16.916 1.00 0.00 ATOM 334 CA ASN 102 -9.708 -19.426 15.667 1.00 0.00 ATOM 335 C ASN 102 -8.832 -18.360 15.013 1.00 0.00 ATOM 336 O ASN 102 -8.001 -17.738 15.662 1.00 0.00 ATOM 337 N ALA 103 -9.021 -18.163 13.706 1.00 0.00 ATOM 338 CA ALA 103 -8.266 -17.194 12.925 1.00 0.00 ATOM 339 C ALA 103 -9.023 -15.884 12.959 1.00 0.00 ATOM 340 O ALA 103 -10.239 -15.881 13.267 1.00 0.00 ATOM 341 N SER 104 -8.318 -14.784 12.657 1.00 0.00 ATOM 342 CA SER 104 -8.963 -13.496 12.504 1.00 0.00 ATOM 343 C SER 104 -9.624 -13.455 11.162 1.00 0.00 ATOM 344 O SER 104 -9.125 -14.032 10.205 1.00 0.00 ATOM 345 N LYS 105 -10.738 -12.764 11.033 1.00 0.00 ATOM 346 CA LYS 105 -11.165 -12.510 9.679 1.00 0.00 ATOM 347 C LYS 105 -11.169 -11.005 9.432 1.00 0.00 ATOM 348 O LYS 105 -11.902 -10.512 8.593 1.00 0.00 ATOM 349 N SER 106 -10.326 -10.285 10.155 1.00 0.00 ATOM 350 CA SER 106 -10.139 -8.860 9.925 1.00 0.00 ATOM 351 C SER 106 -8.683 -8.510 9.608 1.00 0.00 ATOM 352 O SER 106 -7.801 -8.775 10.398 1.00 0.00 END ########################## # # # ACE results: # # # ########################## # WARNING! TARGET 787 atoms, MODEL 503 atoms, 417 common with TARGET Number of atoms possible to evaluate: 352 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 51.33 73.3 172 91.5 188 ARMSMC SECONDARY STRUCTURE . . 43.14 77.2 127 97.7 130 ARMSMC SURFACE . . . . . . . . 55.39 72.3 130 90.3 144 ARMSMC BURIED . . . . . . . . 35.99 76.2 42 95.5 44 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 88 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 84 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 62 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 67 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 21 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 67 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 48 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 48 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 52 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 24 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 20 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 18 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 14 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 10 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.68 (Number of atoms: 88) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.68 88 92.6 95 CRMSCA CRN = ALL/NP . . . . . 0.0760 CRMSCA SECONDARY STRUCTURE . . 5.41 64 98.5 65 CRMSCA SURFACE . . . . . . . . 7.15 67 91.8 73 CRMSCA BURIED . . . . . . . . 4.92 21 95.5 22 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.63 352 74.4 473 CRMSMC SECONDARY STRUCTURE . . 5.42 256 78.8 325 CRMSMC SURFACE . . . . . . . . 7.07 268 73.8 363 CRMSMC BURIED . . . . . . . . 4.99 84 76.4 110 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 407 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 343 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 287 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 315 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 92 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 6.63 352 44.7 787 CRMSALL SECONDARY STRUCTURE . . 5.42 256 46.8 547 CRMSALL SURFACE . . . . . . . . 7.07 268 44.2 607 CRMSALL BURIED . . . . . . . . 4.99 84 46.7 180 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.984 1.000 0.500 88 92.6 95 ERRCA SECONDARY STRUCTURE . . 4.101 1.000 0.500 64 98.5 65 ERRCA SURFACE . . . . . . . . 5.304 1.000 0.500 67 91.8 73 ERRCA BURIED . . . . . . . . 3.965 1.000 0.500 21 95.5 22 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.931 1.000 0.500 352 74.4 473 ERRMC SECONDARY STRUCTURE . . 4.097 1.000 0.500 256 78.8 325 ERRMC SURFACE . . . . . . . . 5.231 1.000 0.500 268 73.8 363 ERRMC BURIED . . . . . . . . 3.975 1.000 0.500 84 76.4 110 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 407 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 343 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 287 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 315 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 92 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.931 1.000 0.500 352 44.7 787 ERRALL SECONDARY STRUCTURE . . 4.097 1.000 0.500 256 46.8 547 ERRALL SURFACE . . . . . . . . 5.231 1.000 0.500 268 44.2 607 ERRALL BURIED . . . . . . . . 3.975 1.000 0.500 84 46.7 180 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 4 27 45 58 76 88 95 DISTCA CA (P) 4.21 28.42 47.37 61.05 80.00 95 DISTCA CA (RMS) 0.68 1.39 1.90 2.53 4.34 DISTCA ALL (N) 22 115 184 236 299 352 787 DISTALL ALL (P) 2.80 14.61 23.38 29.99 37.99 787 DISTALL ALL (RMS) 0.75 1.42 1.89 2.56 4.16 DISTALL END of the results output