####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 56 ( 224), selected 56 , name T0547TS328_1_2-D4 # Molecule2: number of CA atoms 56 ( 459), selected 56 , name T0547-D4.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0547TS328_1_2-D4.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 26 581 - 606 4.93 15.12 LCS_AVERAGE: 41.65 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 555 - 568 1.82 12.49 LCS_AVERAGE: 16.65 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 557 - 567 0.99 13.20 LCS_AVERAGE: 11.54 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 56 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT Q 554 Q 554 3 5 22 0 4 4 5 6 6 7 15 17 19 26 32 34 37 40 41 43 43 47 48 LCS_GDT S 555 S 555 3 14 22 3 4 8 11 13 13 15 17 18 25 30 33 36 38 40 41 43 43 47 48 LCS_GDT I 556 I 556 3 14 22 3 4 5 5 10 13 19 24 27 29 30 33 36 38 40 41 43 43 47 48 LCS_GDT L 557 L 557 11 14 22 7 9 11 12 13 16 19 24 27 29 30 33 36 38 40 41 43 43 47 48 LCS_GDT D 558 D 558 11 14 22 7 9 11 12 13 13 15 17 22 29 30 33 36 38 40 41 43 43 47 48 LCS_GDT T 559 T 559 11 14 22 7 9 11 12 13 13 19 24 27 29 30 33 36 38 40 41 43 43 47 48 LCS_GDT L 560 L 560 11 14 22 7 9 11 12 16 20 23 24 27 29 30 33 36 38 40 41 43 43 47 48 LCS_GDT E 561 E 561 11 14 22 7 8 10 12 13 20 23 24 27 29 30 33 36 38 40 41 43 43 47 48 LCS_GDT D 562 D 562 11 14 22 7 9 11 12 13 20 23 24 27 29 30 33 36 38 40 41 43 43 47 48 LCS_GDT L 563 L 563 11 14 22 7 10 11 12 16 20 23 24 27 29 30 33 36 38 40 41 43 43 47 48 LCS_GDT D 564 D 564 11 14 22 5 9 11 12 16 20 23 24 27 29 30 33 36 38 40 41 43 43 47 48 LCS_GDT Y 565 Y 565 11 14 22 5 9 11 12 16 20 23 24 27 29 30 33 36 38 40 41 43 43 47 48 LCS_GDT D 566 D 566 11 14 22 5 9 11 12 16 20 23 24 27 29 30 33 36 38 40 41 43 43 47 48 LCS_GDT I 567 I 567 11 14 22 5 7 11 12 16 20 23 24 27 29 30 33 36 38 40 41 43 43 47 48 LCS_GDT H 568 H 568 7 14 22 5 7 11 12 14 20 23 24 27 29 30 33 36 38 40 41 43 43 47 48 LCS_GDT A 569 A 569 3 13 22 3 3 4 4 6 12 14 17 27 29 30 33 36 38 40 41 43 43 47 48 LCS_GDT I 570 I 570 3 4 22 0 3 3 5 7 13 13 19 27 29 30 33 36 38 40 41 43 43 47 48 LCS_GDT M 571 M 571 3 3 22 3 3 3 6 8 12 15 18 21 25 30 33 36 38 40 41 43 43 47 48 LCS_GDT D 572 D 572 3 3 22 3 4 4 4 9 10 14 16 19 21 26 33 36 38 40 41 43 43 47 48 LCS_GDT I 573 I 573 3 3 22 3 4 4 4 4 8 10 15 19 23 29 33 36 38 40 41 43 43 47 48 LCS_GDT L 574 L 574 3 5 22 0 4 4 4 5 6 7 8 8 11 14 23 27 33 37 41 43 43 47 48 LCS_GDT N 575 N 575 4 5 22 4 4 4 4 6 8 9 10 12 12 13 15 16 20 23 30 32 38 44 48 LCS_GDT E 576 E 576 4 5 17 4 4 4 4 6 8 9 10 12 12 13 15 16 20 22 32 34 42 47 48 LCS_GDT R 577 R 577 4 5 17 4 4 4 4 5 8 9 10 12 12 13 15 16 20 22 25 31 36 44 48 LCS_GDT I 578 I 578 4 5 17 4 4 4 4 6 8 9 10 12 12 13 15 19 23 25 36 40 43 47 48 LCS_GDT S 579 S 579 4 5 17 3 3 4 4 6 6 7 8 10 11 13 14 14 19 24 29 40 42 47 48 LCS_GDT N 580 N 580 4 5 25 3 3 4 4 6 6 9 10 12 12 13 24 26 32 36 40 43 43 47 48 LCS_GDT S 581 S 581 5 5 26 4 4 5 5 5 6 9 10 12 15 20 22 34 37 40 41 43 43 47 48 LCS_GDT K 582 K 582 5 5 26 4 4 5 5 6 13 13 17 21 25 30 33 36 38 40 41 43 43 47 48 LCS_GDT L 583 L 583 5 5 26 4 4 5 12 14 20 23 24 27 29 30 33 36 38 40 41 43 43 47 48 LCS_GDT V 584 V 584 5 5 26 4 4 10 12 16 20 23 24 27 29 30 33 36 38 40 41 43 43 47 48 LCS_GDT N 585 N 585 5 5 26 3 3 5 5 6 17 23 24 27 29 30 33 36 38 40 41 43 43 47 48 LCS_GDT D 586 D 586 3 5 26 3 3 4 4 8 12 16 21 22 26 29 33 36 38 40 41 43 43 47 48 LCS_GDT K 587 K 587 4 5 26 3 4 4 4 6 8 9 10 17 19 24 26 28 33 35 38 41 42 44 47 LCS_GDT Q 588 Q 588 4 5 26 3 4 4 4 6 8 9 14 17 18 24 25 28 31 35 38 41 42 44 46 LCS_GDT K 589 K 589 5 5 26 3 4 5 5 8 14 16 21 22 23 27 31 34 38 40 41 43 43 47 48 LCS_GDT K 590 K 590 5 5 26 3 4 5 5 9 14 16 19 20 24 29 33 36 38 40 41 43 43 47 48 LCS_GDT H 591 H 591 5 13 26 3 4 5 8 11 14 16 21 22 28 30 33 36 38 40 41 43 43 47 48 LCS_GDT I 592 I 592 5 13 26 3 4 5 9 13 15 23 24 27 29 30 33 36 38 40 41 43 43 47 48 LCS_GDT L 593 L 593 5 13 26 3 5 10 12 14 16 23 24 27 29 30 33 36 38 40 41 43 43 47 48 LCS_GDT G 594 G 594 10 13 26 9 10 11 12 16 20 23 24 27 29 30 33 36 38 40 41 43 43 47 48 LCS_GDT E 595 E 595 10 13 26 9 10 11 12 16 20 23 24 27 29 30 33 36 38 40 41 43 43 47 48 LCS_GDT L 596 L 596 10 13 26 9 10 11 12 16 20 23 24 27 29 30 33 36 38 40 41 43 43 47 48 LCS_GDT Y 597 Y 597 10 13 26 9 10 11 12 16 20 23 24 27 29 30 33 36 38 40 41 43 43 47 48 LCS_GDT L 598 L 598 10 13 26 9 10 11 12 16 20 23 24 27 29 30 33 36 38 40 41 43 43 47 48 LCS_GDT F 599 F 599 10 13 26 9 10 11 12 16 20 23 24 27 29 30 33 36 38 40 41 43 43 47 48 LCS_GDT L 600 L 600 10 13 26 9 10 11 12 16 20 23 24 27 29 30 33 36 38 40 41 43 43 47 48 LCS_GDT N 601 N 601 10 13 26 9 10 11 12 16 20 23 24 27 29 30 33 36 38 40 41 43 43 47 48 LCS_GDT D 602 D 602 10 13 26 9 10 11 12 16 20 23 24 26 29 30 33 36 38 40 41 43 43 47 48 LCS_GDT N 603 N 603 10 13 26 3 3 7 11 14 15 16 21 24 27 30 33 36 38 40 41 43 43 47 48 LCS_GDT G 604 G 604 3 7 26 3 3 4 5 8 11 13 15 18 21 23 24 27 30 35 38 42 43 47 48 LCS_GDT Y 605 Y 605 4 7 26 3 4 4 5 7 7 7 9 10 12 15 19 23 24 25 26 30 36 40 46 LCS_GDT L 606 L 606 4 7 26 3 4 4 5 7 7 7 9 10 12 17 19 22 24 25 26 27 27 30 35 LCS_GDT K 607 K 607 4 7 19 3 4 4 5 7 7 7 9 10 12 15 18 18 20 24 26 27 27 29 32 LCS_GDT S 608 S 608 4 7 19 3 4 4 5 7 7 7 9 10 12 15 18 18 20 24 25 25 27 28 30 LCS_GDT I 609 I 609 3 6 15 0 3 4 5 6 6 7 9 10 11 14 15 16 20 22 22 24 24 26 30 LCS_AVERAGE LCS_A: 23.28 ( 11.54 16.65 41.65 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 10 11 12 16 20 23 24 27 29 30 33 36 38 40 41 43 43 47 48 GDT PERCENT_AT 16.07 17.86 19.64 21.43 28.57 35.71 41.07 42.86 48.21 51.79 53.57 58.93 64.29 67.86 71.43 73.21 76.79 76.79 83.93 85.71 GDT RMS_LOCAL 0.28 0.68 0.86 1.04 1.77 2.15 2.49 2.60 3.08 3.22 3.38 3.79 4.19 4.44 4.66 4.78 5.12 5.12 6.00 6.19 GDT RMS_ALL_AT 10.69 10.17 10.02 10.00 10.54 10.52 10.47 10.47 10.54 10.51 10.49 10.30 10.23 10.17 10.20 10.20 10.11 10.11 9.83 9.79 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA Q 554 Q 554 8.809 5 0.600 0.600 8.809 3.810 1.693 LGA S 555 S 555 7.927 2 0.551 0.551 9.171 5.833 3.889 LGA I 556 I 556 4.761 4 0.287 0.287 5.047 30.238 15.119 LGA L 557 L 557 4.364 4 0.467 0.467 4.470 40.357 20.179 LGA D 558 D 558 6.322 4 0.024 0.024 6.322 24.048 12.024 LGA T 559 T 559 5.273 3 0.085 0.085 5.678 33.571 19.184 LGA L 560 L 560 1.614 4 0.126 0.126 2.913 77.738 38.869 LGA E 561 E 561 2.961 5 0.036 0.036 3.053 57.262 25.450 LGA D 562 D 562 2.893 4 0.025 0.025 2.930 67.143 33.571 LGA L 563 L 563 0.657 4 0.107 0.107 2.608 77.738 38.869 LGA D 564 D 564 3.041 4 0.064 0.064 3.738 55.833 27.917 LGA Y 565 Y 565 2.172 8 0.054 0.054 2.172 70.833 23.611 LGA D 566 D 566 2.664 4 0.123 0.123 2.664 69.286 34.643 LGA I 567 I 567 1.744 4 0.581 0.581 1.744 75.000 37.500 LGA H 568 H 568 2.067 6 0.220 0.220 3.249 57.381 22.952 LGA A 569 A 569 5.932 1 0.309 0.309 5.932 26.310 21.048 LGA I 570 I 570 6.079 4 0.616 0.616 6.207 18.214 9.107 LGA M 571 M 571 7.606 4 0.517 0.517 7.770 8.571 4.286 LGA D 572 D 572 9.920 4 0.551 0.551 9.920 0.952 0.476 LGA I 573 I 573 9.360 4 0.589 0.589 9.553 2.024 1.012 LGA L 574 L 574 12.012 4 0.549 0.549 12.596 0.000 0.000 LGA N 575 N 575 15.540 4 0.463 0.463 15.540 0.000 0.000 LGA E 576 E 576 15.575 5 0.104 0.104 15.812 0.000 0.000 LGA R 577 R 577 15.648 7 0.360 0.360 15.809 0.000 0.000 LGA I 578 I 578 13.606 4 0.578 0.578 14.656 0.000 0.000 LGA S 579 S 579 15.767 2 0.049 0.049 15.767 0.000 0.000 LGA N 580 N 580 13.338 4 0.643 0.643 14.001 0.357 0.179 LGA S 581 S 581 9.397 2 0.650 0.650 10.907 6.429 4.286 LGA K 582 K 582 7.781 5 0.321 0.321 8.330 11.667 5.185 LGA L 583 L 583 2.380 4 0.195 0.195 4.158 54.167 27.083 LGA V 584 V 584 2.770 3 0.559 0.559 3.362 61.190 34.966 LGA N 585 N 585 3.190 4 0.533 0.533 4.073 50.833 25.417 LGA D 586 D 586 7.883 4 0.017 0.017 7.883 10.714 5.357 LGA K 587 K 587 9.362 5 0.528 0.528 10.197 1.667 0.741 LGA Q 588 Q 588 9.737 5 0.060 0.060 9.737 1.310 0.582 LGA K 589 K 589 8.199 5 0.600 0.600 8.199 8.452 3.757 LGA K 590 K 590 9.795 5 0.176 0.176 9.795 1.905 0.847 LGA H 591 H 591 7.485 6 0.091 0.091 8.444 18.095 7.238 LGA I 592 I 592 3.990 4 0.544 0.544 5.096 47.857 23.929 LGA L 593 L 593 3.743 4 0.118 0.118 3.868 48.452 24.226 LGA G 594 G 594 2.918 0 0.386 0.386 2.918 62.857 62.857 LGA E 595 E 595 1.839 5 0.052 0.052 2.207 72.976 32.434 LGA L 596 L 596 1.836 4 0.030 0.030 1.914 75.000 37.500 LGA Y 597 Y 597 1.816 8 0.070 0.070 1.960 72.857 24.286 LGA L 598 L 598 1.787 4 0.078 0.078 2.156 70.833 35.417 LGA F 599 F 599 1.574 7 0.050 0.050 2.042 72.976 26.537 LGA L 600 L 600 1.748 4 0.023 0.023 2.367 68.810 34.405 LGA N 601 N 601 2.571 4 0.300 0.300 3.088 57.262 28.631 LGA D 602 D 602 2.800 4 0.633 0.633 4.129 48.690 24.345 LGA N 603 N 603 5.613 4 0.407 0.407 9.403 14.762 7.381 LGA G 604 G 604 11.292 0 0.621 0.621 13.206 0.714 0.714 LGA Y 605 Y 605 16.680 8 0.027 0.027 18.449 0.000 0.000 LGA L 606 L 606 22.169 4 0.050 0.050 22.773 0.000 0.000 LGA K 607 K 607 24.286 5 0.529 0.529 28.332 0.000 0.000 LGA S 608 S 608 29.822 2 0.263 0.263 29.822 0.000 0.000 LGA I 609 I 609 30.302 4 0.383 0.383 32.937 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 56 224 224 100.00 459 224 48.80 56 SUMMARY(RMSD_GDC): 9.286 9.209 9.209 31.125 15.530 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 56 56 4.0 24 2.60 38.839 34.652 0.887 LGA_LOCAL RMSD: 2.604 Number of atoms: 24 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.465 Number of assigned atoms: 56 Std_ASGN_ATOMS RMSD: 9.286 Standard rmsd on all 56 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.095328 * X + -0.130460 * Y + 0.986860 * Z + -28.317387 Y_new = 0.341973 * X + 0.935331 * Y + 0.090614 * Z + 140.251343 Z_new = -0.934862 * X + 0.328841 * Y + 0.133777 * Z + -17.515697 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.298938 1.207870 1.184430 [DEG: 74.4237 69.2059 67.8628 ] ZXZ: 1.662360 1.436617 -1.232560 [DEG: 95.2462 82.3121 -70.6205 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0547TS328_1_2-D4 REMARK 2: T0547-D4.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0547TS328_1_2-D4.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 56 56 4.0 24 2.60 34.652 9.29 REMARK ---------------------------------------------------------- MOLECULE T0547TS328_1_2-D4 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 2 REMARK PFRMAT TS REMARK TARGET T0547 REMARK PARENT 2on3_A ATOM 2153 N GLN 554 -8.689 99.469 -16.961 1.00 9.00 N ATOM 2154 CA GLN 554 -8.028 99.736 -15.683 1.00 9.00 C ATOM 2155 C GLN 554 -8.996 100.322 -14.649 1.00 9.00 C ATOM 2156 O GLN 554 -8.564 100.838 -13.621 1.00 9.00 O ATOM 2157 N SER 555 -10.304 100.289 -14.951 1.00 3.00 N ATOM 2158 CA SER 555 -11.336 100.808 -14.046 1.00 3.00 C ATOM 2159 C SER 555 -10.964 102.156 -13.467 1.00 3.00 C ATOM 2160 O SER 555 -11.162 102.438 -12.274 1.00 3.00 O ATOM 2161 N ILE 556 -10.479 103.009 -14.349 1.00 3.00 N ATOM 2162 CA ILE 556 -10.015 104.324 -13.936 1.00 3.00 C ATOM 2163 C ILE 556 -10.500 105.500 -14.733 1.00 3.00 C ATOM 2164 O ILE 556 -10.061 106.645 -14.511 1.00 3.00 O ATOM 2165 N LEU 557 -11.425 105.286 -15.671 1.00 3.00 N ATOM 2166 CA LEU 557 -11.964 106.385 -16.466 1.00 3.00 C ATOM 2167 C LEU 557 -12.213 105.952 -17.904 1.00 3.00 C ATOM 2168 O LEU 557 -11.841 106.654 -18.845 1.00 3.00 O ATOM 2169 N ASP 558 -12.856 104.805 -18.068 1.00 3.00 N ATOM 2170 CA ASP 558 -13.199 104.304 -19.378 1.00 3.00 C ATOM 2171 C ASP 558 -14.190 105.230 -20.081 1.00 3.00 C ATOM 2172 O ASP 558 -14.009 105.608 -21.261 1.00 3.00 O ATOM 2173 N THR 559 -15.227 105.615 -19.339 1.00 3.00 N ATOM 2174 CA THR 559 -16.227 106.538 -19.852 1.00 3.00 C ATOM 2175 C THR 559 -15.630 107.926 -20.164 1.00 3.00 C ATOM 2176 O THR 559 -16.141 108.659 -21.002 1.00 3.00 O ATOM 2177 N LEU 560 -14.531 108.253 -19.500 1.00 3.00 N ATOM 2178 CA LEU 560 -13.841 109.500 -19.712 1.00 3.00 C ATOM 2179 C LEU 560 -12.913 109.407 -20.899 1.00 3.00 C ATOM 2180 O LEU 560 -12.454 110.417 -21.412 1.00 3.00 O ATOM 2181 N GLU 561 -12.631 108.186 -21.331 1.00 3.00 N ATOM 2182 CA GLU 561 -11.764 107.962 -22.491 1.00 3.00 C ATOM 2183 C GLU 561 -12.568 108.091 -23.754 1.00 3.00 C ATOM 2184 O GLU 561 -12.178 108.811 -24.661 1.00 3.00 O ATOM 2185 N ASP 562 -13.697 107.385 -23.802 1.00 3.00 N ATOM 2186 CA ASP 562 -14.582 107.442 -24.963 1.00 3.00 C ATOM 2187 C ASP 562 -15.084 108.874 -25.199 1.00 3.00 C ATOM 2188 O ASP 562 -15.481 109.232 -26.322 1.00 3.00 O ATOM 2189 N LEU 563 -15.006 109.695 -24.145 1.00 3.00 N ATOM 2190 CA LEU 563 -15.408 111.109 -24.180 1.00 3.00 C ATOM 2191 C LEU 563 -14.286 112.070 -24.521 1.00 3.00 C ATOM 2192 O LEU 563 -14.538 113.231 -24.821 1.00 3.00 O ATOM 2193 N ASP 564 -13.055 111.589 -24.483 1.00 3.00 N ATOM 2194 CA ASP 564 -11.905 112.439 -24.732 1.00 3.00 C ATOM 2195 C ASP 564 -11.840 113.620 -23.780 1.00 3.00 C ATOM 2196 O ASP 564 -11.711 114.780 -24.205 1.00 3.00 O ATOM 2197 N TYR 565 -11.950 113.312 -22.491 1.00 3.00 N ATOM 2198 CA TYR 565 -11.696 114.287 -21.444 1.00 3.00 C ATOM 2199 C TYR 565 -10.475 113.843 -20.665 1.00 3.00 C ATOM 2200 O TYR 565 -10.288 112.652 -20.421 1.00 3.00 O ATOM 2201 N ASP 566 -9.631 114.804 -20.310 1.00 3.00 N ATOM 2202 CA ASP 566 -8.382 114.499 -19.653 1.00 3.00 C ATOM 2203 C ASP 566 -8.573 114.331 -18.158 1.00 3.00 C ATOM 2204 O ASP 566 -9.065 115.239 -17.480 1.00 3.00 O ATOM 2205 N ILE 567 -8.177 113.180 -17.633 1.00 3.00 N ATOM 2206 CA ILE 567 -8.148 113.020 -16.193 1.00 3.00 C ATOM 2207 C ILE 567 -6.707 113.091 -15.691 1.00 3.00 C ATOM 2208 O ILE 567 -5.925 112.160 -15.848 1.00 3.00 O ATOM 2209 N HIS 568 -6.367 114.219 -15.090 1.00 3.00 N ATOM 2210 CA HIS 568 -5.031 114.448 -14.601 1.00 3.00 C ATOM 2211 C HIS 568 -4.817 113.878 -13.209 1.00 3.00 C ATOM 2212 O HIS 568 -3.692 113.914 -12.705 1.00 3.00 O ATOM 2213 N ALA 569 -5.871 113.382 -12.562 1.00 3.00 N ATOM 2214 CA ALA 569 -5.651 112.757 -11.253 1.00 3.00 C ATOM 2215 C ALA 569 -6.571 112.008 -10.322 1.00 3.00 C ATOM 2216 O ALA 569 -7.299 111.108 -10.755 1.00 3.00 O ATOM 2217 N ILE 570 -6.539 112.366 -9.042 1.00 3.00 N ATOM 2218 CA ILE 570 -7.370 111.739 -8.013 1.00 3.00 C ATOM 2219 C ILE 570 -6.970 112.260 -6.645 1.00 3.00 C ATOM 2220 O ILE 570 -5.787 112.467 -6.374 1.00 3.00 O ATOM 2221 N MET 571 -7.966 112.489 -5.776 1.00 3.00 N ATOM 2222 CA MET 571 -7.698 112.979 -4.430 1.00 3.00 C ATOM 2223 C MET 571 -8.935 112.963 -3.528 1.00 3.00 C ATOM 2224 O MET 571 -9.483 114.015 -3.198 1.00 3.00 O ATOM 2225 N ASP 572 -9.403 111.755 -3.144 1.00 9.00 N ATOM 2226 CA ASP 572 -10.581 111.613 -2.281 1.00 9.00 C ATOM 2227 C ASP 572 -10.218 111.908 -0.829 1.00 9.00 C ATOM 2228 O ASP 572 -10.017 110.988 -0.033 1.00 9.00 O ATOM 2229 N ILE 573 -10.087 113.180 -0.486 1.00 3.00 N ATOM 2230 CA ILE 573 -9.741 113.591 0.870 1.00 3.00 C ATOM 2231 C ILE 573 -10.959 113.550 1.805 1.00 3.00 C ATOM 2232 O ILE 573 -11.994 114.157 1.536 1.00 3.00 O ATOM 2233 N LEU 574 -10.847 112.814 2.929 1.00 3.00 N ATOM 2234 CA LEU 574 -11.912 112.657 3.927 1.00 3.00 C ATOM 2235 C LEU 574 -12.054 113.797 4.933 1.00 3.00 C ATOM 2236 O LEU 574 -11.199 114.677 5.066 1.00 3.00 O ATOM 2237 N ASN 575 -13.142 113.719 5.692 1.00 3.00 N ATOM 2238 CA ASN 575 -13.467 114.698 6.720 1.00 3.00 C ATOM 2239 C ASN 575 -12.974 115.065 8.125 1.00 3.00 C ATOM 2240 O ASN 575 -12.068 114.407 8.657 1.00 3.00 O ATOM 2241 N GLU 576 -13.564 116.106 8.717 1.00 3.00 N ATOM 2242 CA GLU 576 -13.069 116.657 9.990 1.00 3.00 C ATOM 2243 C GLU 576 -13.265 115.730 11.194 1.00 3.00 C ATOM 2244 O GLU 576 -12.450 115.740 12.116 1.00 3.00 O ATOM 2245 N ARG 577 -14.330 114.923 11.167 1.00 3.00 N ATOM 2246 CA ARG 577 -14.566 113.882 12.181 1.00 3.00 C ATOM 2247 C ARG 577 -13.655 112.678 11.997 1.00 3.00 C ATOM 2248 O ARG 577 -14.065 111.532 12.217 1.00 3.00 O ATOM 2249 N ILE 578 -12.417 112.964 11.582 1.00 3.00 N ATOM 2250 CA ILE 578 -11.341 111.983 11.379 1.00 3.00 C ATOM 2251 C ILE 578 -10.619 111.654 12.699 1.00 3.00 C ATOM 2252 O ILE 578 -9.854 112.476 13.255 1.00 3.00 O ATOM 2253 N SER 579 -10.870 110.442 13.184 1.00 3.00 N ATOM 2254 CA SER 579 -10.219 109.951 14.392 1.00 3.00 C ATOM 2255 C SER 579 -8.862 109.269 14.098 1.00 3.00 C ATOM 2256 O SER 579 -7.837 109.641 14.681 1.00 3.00 O ATOM 2257 N ASN 580 -8.879 108.290 13.187 1.00 3.00 N ATOM 2258 CA ASN 580 -7.709 107.493 12.804 1.00 3.00 C ATOM 2259 C ASN 580 -6.902 108.295 11.763 1.00 3.00 C ATOM 2260 O ASN 580 -7.491 108.867 10.851 1.00 3.00 O ATOM 2261 N SER 581 -5.565 108.394 11.938 1.00 3.00 N ATOM 2262 CA SER 581 -4.662 108.870 10.877 1.00 3.00 C ATOM 2263 C SER 581 -4.508 107.850 9.752 1.00 3.00 C ATOM 2264 O SER 581 -4.223 108.221 8.622 1.00 3.00 O ATOM 2265 N LYS 582 -4.710 106.576 10.072 1.00 3.00 N ATOM 2266 CA LYS 582 -4.680 105.492 9.089 1.00 3.00 C ATOM 2267 C LYS 582 -5.522 105.781 7.866 1.00 3.00 C ATOM 2268 O LYS 582 -5.158 105.380 6.759 1.00 3.00 O ATOM 2269 N LEU 583 -6.649 106.455 8.085 1.00 3.00 N ATOM 2270 CA LEU 583 -7.605 106.794 7.034 1.00 3.00 C ATOM 2271 C LEU 583 -6.925 107.419 5.834 1.00 3.00 C ATOM 2272 O LEU 583 -7.274 107.097 4.690 1.00 3.00 O ATOM 2273 N VAL 584 -5.965 108.305 6.116 1.00 3.00 N ATOM 2274 CA VAL 584 -5.146 108.955 5.095 1.00 3.00 C ATOM 2275 C VAL 584 -4.363 107.956 4.254 1.00 3.00 C ATOM 2276 O VAL 584 -4.519 107.922 3.028 1.00 3.00 O ATOM 2277 N ASN 585 -3.542 107.151 4.939 1.00 3.00 N ATOM 2278 CA ASN 585 -2.769 106.027 4.376 1.00 3.00 C ATOM 2279 C ASN 585 -3.604 105.124 3.445 1.00 3.00 C ATOM 2280 O ASN 585 -3.250 104.878 2.284 1.00 3.00 O ATOM 2281 N ASP 586 -4.716 104.638 3.984 1.00 3.00 N ATOM 2282 CA ASP 586 -5.694 103.899 3.217 1.00 3.00 C ATOM 2283 C ASP 586 -6.057 104.630 1.932 1.00 3.00 C ATOM 2284 O ASP 586 -5.950 104.076 0.859 1.00 3.00 O ATOM 2285 N LYS 587 -6.464 105.884 2.055 1.00 3.00 N ATOM 2286 CA LYS 587 -6.946 106.694 0.928 1.00 3.00 C ATOM 2287 C LYS 587 -8.343 106.289 0.551 1.00 3.00 C ATOM 2288 O LYS 587 -8.987 105.562 1.323 1.00 3.00 O ATOM 2289 N GLN 588 -8.842 106.625 -0.621 1.00 3.00 N ATOM 2290 CA GLN 588 -10.123 106.103 -1.075 1.00 3.00 C ATOM 2291 C GLN 588 -10.074 104.597 -1.302 1.00 3.00 C ATOM 2292 O GLN 588 -11.061 103.903 -1.092 1.00 3.00 O ATOM 2293 N LYS 589 -8.936 104.101 -1.752 1.00 3.00 N ATOM 2294 CA LYS 589 -8.733 102.671 -1.997 1.00 3.00 C ATOM 2295 C LYS 589 -7.665 102.129 -1.061 1.00 3.00 C ATOM 2296 O LYS 589 -6.480 102.379 -1.292 1.00 3.00 O ATOM 2297 N LYS 590 -8.117 101.399 -0.041 1.00 9.00 N ATOM 2298 CA LYS 590 -7.105 100.887 0.900 1.00 9.00 C ATOM 2299 C LYS 590 -6.262 99.759 0.325 1.00 9.00 C ATOM 2300 O LYS 590 -5.224 99.490 0.935 1.00 9.00 O ATOM 2301 N HIS 591 -6.643 99.182 -0.802 1.00 9.00 N ATOM 2302 CA HIS 591 -5.903 98.058 -1.372 1.00 9.00 C ATOM 2303 C HIS 591 -4.671 98.577 -2.086 1.00 9.00 C ATOM 2304 O HIS 591 -3.517 98.318 -1.745 1.00 9.00 O ATOM 2305 N ILE 592 -4.896 99.369 -3.144 1.00 3.00 N ATOM 2306 CA ILE 592 -3.841 100.033 -3.891 1.00 3.00 C ATOM 2307 C ILE 592 -4.118 101.533 -4.029 1.00 3.00 C ATOM 2308 O ILE 592 -4.739 102.027 -4.957 1.00 3.00 O ATOM 2309 N LEU 593 -3.703 102.276 -3.036 1.00 3.00 N ATOM 2310 CA LEU 593 -4.007 103.705 -2.963 1.00 3.00 C ATOM 2311 C LEU 593 -3.656 104.587 -4.176 1.00 3.00 C ATOM 2312 O LEU 593 -4.364 105.593 -4.371 1.00 3.00 O ATOM 2313 N GLY 594 -2.600 104.299 -4.929 1.00 3.00 N ATOM 2314 CA GLY 594 -2.199 105.149 -6.027 1.00 3.00 C ATOM 2315 C GLY 594 -2.745 104.099 -6.951 1.00 3.00 C ATOM 2316 O GLY 594 -2.300 103.970 -8.084 1.00 3.00 O ATOM 2317 N GLU 595 -3.704 103.339 -6.449 1.00 3.00 N ATOM 2318 CA GLU 595 -4.353 102.322 -7.234 1.00 3.00 C ATOM 2319 C GLU 595 -5.087 102.913 -8.465 1.00 3.00 C ATOM 2320 O GLU 595 -4.911 102.431 -9.577 1.00 3.00 O ATOM 2321 N LEU 596 -5.878 103.968 -8.277 1.00 3.00 N ATOM 2322 CA LEU 596 -6.573 104.612 -9.387 1.00 3.00 C ATOM 2323 C LEU 596 -5.562 105.203 -10.376 1.00 3.00 C ATOM 2324 O LEU 596 -5.784 105.184 -11.577 1.00 3.00 O ATOM 2325 N TYR 597 -4.446 105.713 -9.874 1.00 3.00 N ATOM 2326 CA TYR 597 -3.404 106.208 -10.744 1.00 3.00 C ATOM 2327 C TYR 597 -2.959 105.087 -11.666 1.00 3.00 C ATOM 2328 O TYR 597 -2.690 105.317 -12.845 1.00 3.00 O ATOM 2329 N LEU 598 -2.873 103.879 -11.111 1.00 3.00 N ATOM 2330 CA LEU 598 -2.451 102.704 -11.860 1.00 3.00 C ATOM 2331 C LEU 598 -3.560 102.331 -12.824 1.00 3.00 C ATOM 2332 O LEU 598 -3.345 102.260 -14.039 1.00 3.00 O ATOM 2333 N PHE 599 -4.759 102.125 -12.287 1.00 3.00 N ATOM 2334 CA PHE 599 -5.947 101.947 -13.124 1.00 3.00 C ATOM 2335 C PHE 599 -5.954 102.924 -14.295 1.00 3.00 C ATOM 2336 O PHE 599 -6.323 102.582 -15.411 1.00 3.00 O ATOM 2337 N LEU 600 -5.533 104.144 -14.022 1.00 3.00 N ATOM 2338 CA LEU 600 -5.624 105.192 -14.991 1.00 3.00 C ATOM 2339 C LEU 600 -4.587 105.098 -16.069 1.00 3.00 C ATOM 2340 O LEU 600 -4.877 105.417 -17.215 1.00 3.00 O ATOM 2341 N ASN 601 -3.373 104.685 -15.710 1.00 3.00 N ATOM 2342 CA ASN 601 -2.312 104.525 -16.700 1.00 3.00 C ATOM 2343 C ASN 601 -2.648 103.349 -17.606 1.00 3.00 C ATOM 2344 O ASN 601 -2.470 103.439 -18.814 1.00 3.00 O ATOM 2345 N ASP 602 -3.169 102.263 -17.032 1.00 3.00 N ATOM 2346 CA ASP 602 -3.626 101.115 -17.815 1.00 3.00 C ATOM 2347 C ASP 602 -4.407 101.523 -19.070 1.00 3.00 C ATOM 2348 O ASP 602 -4.308 100.877 -20.099 1.00 3.00 O ATOM 2349 N ASN 603 -5.212 102.574 -18.969 1.00 3.00 N ATOM 2350 CA ASN 603 -6.006 103.028 -20.111 1.00 3.00 C ATOM 2351 C ASN 603 -5.221 104.333 -20.261 1.00 3.00 C ATOM 2352 O ASN 603 -4.263 104.416 -21.012 1.00 3.00 O ATOM 2353 N GLY 604 -5.684 105.368 -19.570 1.00 3.00 N ATOM 2354 CA GLY 604 -5.054 106.680 -19.591 1.00 3.00 C ATOM 2355 C GLY 604 -5.088 107.215 -18.166 1.00 3.00 C ATOM 2356 O GLY 604 -6.138 107.183 -17.522 1.00 3.00 O ATOM 2357 N TYR 605 -3.957 107.708 -17.676 1.00 3.00 N ATOM 2358 CA TYR 605 -3.897 108.225 -16.316 1.00 3.00 C ATOM 2359 C TYR 605 -2.995 109.429 -16.157 1.00 3.00 C ATOM 2360 O TYR 605 -2.132 109.684 -16.983 1.00 3.00 O ATOM 2361 N LEU 606 -3.183 110.172 -15.086 1.00 3.00 N ATOM 2362 CA LEU 606 -2.354 111.340 -14.848 1.00 3.00 C ATOM 2363 C LEU 606 -2.231 111.573 -13.358 1.00 3.00 C ATOM 2364 O LEU 606 -3.196 111.398 -12.615 1.00 3.00 O ATOM 2365 N LYS 607 -1.042 111.989 -12.936 1.00 3.00 N ATOM 2366 CA LYS 607 -0.781 112.260 -11.542 1.00 3.00 C ATOM 2367 C LYS 607 -1.334 113.642 -11.231 1.00 3.00 C ATOM 2368 O LYS 607 -1.517 114.477 -12.130 1.00 3.00 O ATOM 2369 N SER 608 -1.640 113.874 -9.957 1.00 3.00 N ATOM 2370 CA SER 608 -2.178 115.155 -9.516 1.00 3.00 C ATOM 2371 C SER 608 -2.875 114.343 -8.426 1.00 3.00 C ATOM 2372 O SER 608 -3.815 113.589 -8.685 1.00 3.00 O ATOM 2373 N ILE 609 -2.398 114.510 -7.198 1.00 3.00 N ATOM 2374 CA ILE 609 -3.026 113.901 -6.039 1.00 3.00 C ATOM 2375 C ILE 609 -3.473 114.990 -5.092 1.00 3.00 C ATOM 2376 O ILE 609 -2.654 115.731 -4.577 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 224 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 76.26 51.8 110 100.0 110 ARMSMC SECONDARY STRUCTURE . . 73.03 60.0 70 100.0 70 ARMSMC SURFACE . . . . . . . . 68.86 55.6 90 100.0 90 ARMSMC BURIED . . . . . . . . 103.18 35.0 20 100.0 20 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 53 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 52 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 33 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 43 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 47 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 30 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 31 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 38 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 10 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 9 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 4 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.29 (Number of atoms: 56) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.29 56 100.0 56 CRMSCA CRN = ALL/NP . . . . . 0.1658 CRMSCA SECONDARY STRUCTURE . . 7.28 35 100.0 35 CRMSCA SURFACE . . . . . . . . 9.77 46 100.0 46 CRMSCA BURIED . . . . . . . . 6.64 10 100.0 10 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.21 224 80.6 278 CRMSMC SECONDARY STRUCTURE . . 7.04 140 80.5 174 CRMSMC SURFACE . . . . . . . . 9.68 184 80.7 228 CRMSMC BURIED . . . . . . . . 6.62 40 80.0 50 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 235 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 191 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 151 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 196 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 39 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.21 224 48.8 459 CRMSALL SECONDARY STRUCTURE . . 7.04 140 48.1 291 CRMSALL SURFACE . . . . . . . . 9.68 184 48.4 380 CRMSALL BURIED . . . . . . . . 6.62 40 50.6 79 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.747 0.362 0.186 56 100.0 56 ERRCA SECONDARY STRUCTURE . . 3.530 0.318 0.164 35 100.0 35 ERRCA SURFACE . . . . . . . . 5.086 0.374 0.193 46 100.0 46 ERRCA BURIED . . . . . . . . 3.190 0.305 0.153 10 100.0 10 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.635 0.354 0.183 224 80.6 278 ERRMC SECONDARY STRUCTURE . . 3.373 0.309 0.163 140 80.5 174 ERRMC SURFACE . . . . . . . . 4.942 0.363 0.188 184 80.7 228 ERRMC BURIED . . . . . . . . 3.219 0.310 0.160 40 80.0 50 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 235 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 191 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 151 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 196 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 39 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.635 0.354 0.183 224 48.8 459 ERRALL SECONDARY STRUCTURE . . 3.373 0.309 0.163 140 48.1 291 ERRALL SURFACE . . . . . . . . 4.942 0.363 0.188 184 48.4 380 ERRALL BURIED . . . . . . . . 3.219 0.310 0.160 40 50.6 79 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 2 15 44 56 56 DISTCA CA (P) 0.00 1.79 3.57 26.79 78.57 56 DISTCA CA (RMS) 0.00 1.93 2.26 3.85 6.62 DISTCA ALL (N) 0 2 7 65 187 224 459 DISTALL ALL (P) 0.00 0.44 1.53 14.16 40.74 459 DISTALL ALL (RMS) 0.00 1.79 2.49 3.92 6.66 DISTALL END of the results output