####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 57 ( 228), selected 57 , name T0547TS328_1_1-D1 # Molecule2: number of CA atoms 183 ( 1490), selected 57 , name T0547-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0547TS328_1_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 57 8 - 342 4.15 4.15 LCS_AVERAGE: 31.15 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 31 9 - 39 2.00 4.35 LCS_AVERAGE: 12.97 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 45 - 336 0.77 5.53 LCS_AVERAGE: 5.27 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 57 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT I 8 I 8 4 17 57 3 4 4 4 4 40 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT W 9 W 9 4 31 57 3 7 27 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT G 10 G 10 4 31 57 3 4 8 16 17 19 37 42 48 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT N 11 N 11 13 31 57 4 9 15 18 27 34 43 47 48 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT E 12 E 12 13 31 57 3 4 15 25 34 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT N 13 N 13 13 31 57 7 20 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT F 14 F 14 13 31 57 7 20 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT I 15 I 15 13 31 57 7 20 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT I 16 I 16 13 31 57 7 20 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT K 17 K 17 13 31 57 7 20 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT N 18 N 18 13 31 57 7 12 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT G 19 G 19 13 31 57 7 20 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT K 20 K 20 13 31 57 7 20 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT V 21 V 21 13 31 57 7 20 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT C 22 C 22 13 31 57 7 20 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT I 23 I 23 13 31 57 4 12 23 33 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT N 24 N 24 12 31 57 4 8 16 28 38 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT Y 25 Y 25 4 31 57 3 4 9 14 19 30 40 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT E 26 E 26 4 31 57 7 20 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT K 27 K 27 4 31 57 3 20 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT K 28 K 28 4 31 57 3 11 22 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT P 29 P 29 4 31 57 3 10 16 22 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT A 30 A 30 10 31 57 3 9 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT I 31 I 31 10 31 57 7 20 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT I 32 I 32 10 31 57 7 20 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT D 33 D 33 10 31 57 7 20 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT I 34 I 34 10 31 57 7 20 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT V 35 V 35 10 31 57 7 20 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT K 36 K 36 10 31 57 6 20 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT E 37 E 37 10 31 57 4 7 25 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT L 38 L 38 10 31 57 4 13 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT R 39 R 39 10 31 57 4 7 22 35 39 41 44 46 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT D 40 D 40 4 30 57 3 3 10 24 37 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT D 41 D 41 4 6 57 3 3 4 5 6 22 29 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT G 42 G 42 4 6 57 3 3 4 5 7 18 34 40 48 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT Y 43 Y 43 4 16 57 3 4 11 23 37 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT K 44 K 44 3 16 57 3 3 3 14 34 39 42 45 48 51 54 54 55 55 55 55 55 55 55 56 LCS_GDT G 45 G 45 14 17 57 1 5 12 18 22 38 42 45 48 51 54 54 55 55 55 55 55 55 55 56 LCS_GDT P 46 P 46 14 17 57 7 13 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT L 47 L 47 14 17 57 9 13 27 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT L 48 L 48 14 17 57 9 13 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT L 49 L 49 14 17 57 9 13 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT R 50 R 50 14 17 57 9 13 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT F 51 F 51 14 17 57 9 13 25 34 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT A 330 A 330 14 17 57 9 16 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT V 331 V 331 14 17 57 9 20 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT L 332 L 332 14 17 57 9 20 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT I 333 I 333 14 17 57 9 20 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT A 334 A 334 14 17 57 9 20 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT P 335 P 335 14 17 57 6 20 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT V 336 V 336 14 17 57 4 13 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT L 337 L 337 3 17 57 0 3 5 10 21 29 35 45 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT E 338 E 338 3 17 57 3 3 5 13 19 29 35 45 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT L 339 L 339 4 17 57 3 12 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 LCS_GDT F 340 F 340 4 4 57 3 3 3 4 4 7 35 45 48 49 51 52 55 55 55 55 55 55 55 56 LCS_GDT S 341 S 341 4 4 57 3 3 3 4 4 4 5 5 5 9 9 10 10 18 20 26 30 54 55 56 LCS_GDT Q 342 Q 342 4 4 57 3 3 3 4 4 4 5 5 5 5 5 5 5 5 8 12 12 12 12 13 LCS_AVERAGE LCS_A: 16.46 ( 5.27 12.97 31.15 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 20 28 36 39 41 44 47 49 52 54 54 55 55 55 55 55 55 55 56 GDT PERCENT_AT 4.92 10.93 15.30 19.67 21.31 22.40 24.04 25.68 26.78 28.42 29.51 29.51 30.05 30.05 30.05 30.05 30.05 30.05 30.05 30.60 GDT RMS_LOCAL 0.18 0.76 1.01 1.25 1.37 1.50 1.79 2.20 2.34 2.60 2.73 2.73 2.87 2.87 2.87 2.87 2.87 2.87 2.87 3.31 GDT RMS_ALL_AT 5.24 4.32 4.25 4.21 4.22 4.22 4.21 4.26 4.32 4.35 4.30 4.30 4.24 4.24 4.24 4.24 4.24 4.24 4.24 4.18 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA I 8 I 8 3.637 4 0.277 0.277 3.637 53.810 26.905 LGA W 9 W 9 1.615 10 0.644 0.644 2.553 73.690 21.054 LGA G 10 G 10 5.063 0 0.053 0.053 5.063 34.524 34.524 LGA N 11 N 11 4.748 4 0.435 0.435 4.748 42.024 21.012 LGA E 12 E 12 3.792 5 0.258 0.258 4.260 52.500 23.333 LGA N 13 N 13 0.681 4 0.227 0.227 1.812 86.071 43.036 LGA F 14 F 14 0.623 7 0.095 0.095 0.694 90.476 32.900 LGA I 15 I 15 1.017 4 0.064 0.064 1.149 85.952 42.976 LGA I 16 I 16 0.713 4 0.109 0.109 1.164 88.214 44.107 LGA K 17 K 17 1.170 5 0.395 0.395 1.962 83.810 37.249 LGA N 18 N 18 2.093 4 0.107 0.107 2.398 68.810 34.405 LGA G 19 G 19 1.001 0 0.049 0.049 1.314 83.690 83.690 LGA K 20 K 20 0.860 5 0.051 0.051 0.860 90.476 40.212 LGA V 21 V 21 0.741 3 0.019 0.019 0.769 90.476 51.701 LGA C 22 C 22 0.355 2 0.096 0.096 0.983 95.238 63.492 LGA I 23 I 23 1.911 4 0.425 0.425 2.659 69.048 34.524 LGA N 24 N 24 2.669 4 0.206 0.206 4.865 49.167 24.583 LGA Y 25 Y 25 4.403 8 0.470 0.470 5.444 39.167 13.056 LGA E 26 E 26 0.607 5 0.094 0.094 1.251 92.976 41.323 LGA K 27 K 27 1.421 5 0.110 0.110 2.489 77.381 34.392 LGA K 28 K 28 2.287 5 0.496 0.496 2.549 69.048 30.688 LGA P 29 P 29 3.132 3 0.171 0.171 3.132 63.333 36.190 LGA A 30 A 30 1.547 1 0.110 0.110 3.272 69.286 55.429 LGA I 31 I 31 0.851 4 0.142 0.142 0.908 92.857 46.429 LGA I 32 I 32 0.970 4 0.062 0.062 0.970 90.476 45.238 LGA D 33 D 33 0.690 4 0.065 0.065 0.792 92.857 46.429 LGA I 34 I 34 0.345 4 0.021 0.021 0.345 100.000 50.000 LGA V 35 V 35 0.419 3 0.096 0.096 0.443 100.000 57.143 LGA K 36 K 36 1.241 5 0.161 0.161 2.103 79.524 35.344 LGA E 37 E 37 2.157 5 0.634 0.634 3.474 67.262 29.894 LGA L 38 L 38 1.746 4 0.111 0.111 2.158 70.833 35.417 LGA R 39 R 39 3.229 7 0.544 0.544 3.229 67.619 24.589 LGA D 40 D 40 3.231 4 0.541 0.541 4.526 47.857 23.929 LGA D 41 D 41 5.726 4 0.661 0.661 6.763 21.905 10.952 LGA G 42 G 42 6.231 0 0.320 0.320 6.231 20.476 20.476 LGA Y 43 Y 43 3.497 8 0.541 0.541 4.166 45.119 15.040 LGA K 44 K 44 5.072 5 0.582 0.582 5.831 30.595 13.598 LGA G 45 G 45 4.657 0 0.520 0.520 4.657 42.143 42.143 LGA P 46 P 46 2.295 3 0.592 0.592 3.695 55.714 31.837 LGA L 47 L 47 2.425 4 0.258 0.258 2.430 66.786 33.393 LGA L 48 L 48 1.889 4 0.068 0.068 2.466 66.786 33.393 LGA L 49 L 49 2.097 4 0.069 0.069 2.097 70.833 35.417 LGA R 50 R 50 2.139 7 0.031 0.031 2.677 62.857 22.857 LGA F 51 F 51 2.760 7 0.103 0.103 2.760 62.857 22.857 LGA A 330 A 330 1.327 1 0.021 0.021 1.566 79.286 63.429 LGA V 331 V 331 0.790 3 0.059 0.059 0.992 90.476 51.701 LGA L 332 L 332 1.179 4 0.063 0.063 1.256 83.690 41.845 LGA I 333 I 333 1.413 4 0.008 0.008 1.667 77.143 38.571 LGA A 334 A 334 1.819 1 0.068 0.068 1.819 75.000 60.000 LGA P 335 P 335 1.513 3 0.065 0.065 1.664 75.000 42.857 LGA V 336 V 336 1.486 3 0.279 0.279 4.436 62.500 35.714 LGA L 337 L 337 5.690 4 0.638 0.638 5.690 28.095 14.048 LGA E 338 E 338 5.636 5 0.586 0.586 5.636 38.690 17.196 LGA L 339 L 339 1.314 4 0.553 0.553 2.842 65.119 32.560 LGA F 340 F 340 6.802 7 0.539 0.539 9.893 13.095 4.762 LGA S 341 S 341 13.000 2 0.275 0.275 15.687 0.000 0.000 LGA Q 342 Q 342 20.151 5 0.212 0.212 22.788 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 57 228 228 100.00 460 228 49.57 183 SUMMARY(RMSD_GDC): 4.148 4.198 4.198 20.178 10.655 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 57 183 4.0 47 2.20 21.585 20.557 2.045 LGA_LOCAL RMSD: 2.198 Number of atoms: 47 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 4.261 Number of assigned atoms: 57 Std_ASGN_ATOMS RMSD: 4.148 Standard rmsd on all 57 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.092494 * X + 0.006767 * Y + 0.995690 * Z + -59.370255 Y_new = 0.895854 * X + 0.435912 * Y + -0.086182 * Z + 72.546989 Z_new = -0.434616 * X + 0.899964 * Y + 0.034257 * Z + -32.057480 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.467914 0.449612 1.532750 [DEG: 84.1053 25.7609 87.8201 ] ZXZ: 1.484456 1.536533 -0.449896 [DEG: 85.0531 88.0369 -25.7771 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0547TS328_1_1-D1 REMARK 2: T0547-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0547TS328_1_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 57 183 4.0 47 2.20 20.557 4.15 REMARK ---------------------------------------------------------- MOLECULE T0547TS328_1_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 1 REMARK PFRMAT TS REMARK TARGET T0547 REMARK PARENT 1twi_A ATOM 1 N ILE 8 -21.484 75.013 -38.603 1.00 3.00 N ATOM 2 CA ILE 8 -20.321 75.219 -39.465 1.00 3.00 C ATOM 3 C ILE 8 -20.718 75.977 -40.702 1.00 3.00 C ATOM 4 O ILE 8 -19.853 76.429 -41.430 1.00 3.00 O ATOM 5 N TRP 9 -22.022 76.123 -40.933 1.00 3.00 N ATOM 6 CA TRP 9 -22.539 76.832 -42.143 1.00 3.00 C ATOM 7 C TRP 9 -21.877 78.209 -42.217 1.00 3.00 C ATOM 8 O TRP 9 -22.041 78.993 -41.275 1.00 3.00 O ATOM 9 N GLY 10 -21.210 78.491 -43.335 1.00 3.00 N ATOM 10 CA GLY 10 -20.525 79.756 -43.554 1.00 3.00 C ATOM 11 C GLY 10 -19.075 79.779 -43.043 1.00 3.00 C ATOM 12 O GLY 10 -18.266 80.617 -43.471 1.00 3.00 O ATOM 13 N ASN 11 -18.714 78.846 -42.158 1.00 3.00 N ATOM 14 CA ASN 11 -17.341 78.878 -41.585 1.00 3.00 C ATOM 15 C ASN 11 -16.566 77.807 -42.319 1.00 3.00 C ATOM 16 O ASN 11 -16.341 76.680 -41.850 1.00 3.00 O ATOM 17 N GLU 12 -16.184 78.171 -43.522 1.00 3.00 N ATOM 18 CA GLU 12 -15.553 77.205 -44.425 1.00 3.00 C ATOM 19 C GLU 12 -14.130 76.784 -44.166 1.00 3.00 C ATOM 20 O GLU 12 -13.648 75.787 -44.757 1.00 3.00 O ATOM 21 N ASN 13 -13.440 77.516 -43.294 1.00 3.00 N ATOM 22 CA ASN 13 -12.042 77.210 -43.093 1.00 3.00 C ATOM 23 C ASN 13 -11.685 76.776 -41.712 1.00 3.00 C ATOM 24 O ASN 13 -10.480 76.737 -41.376 1.00 3.00 O ATOM 25 N PHE 14 -12.681 76.431 -40.905 1.00 3.00 N ATOM 26 CA PHE 14 -12.402 75.999 -39.546 1.00 3.00 C ATOM 27 C PHE 14 -12.729 74.547 -39.400 1.00 3.00 C ATOM 28 O PHE 14 -13.479 74.003 -40.201 1.00 3.00 O ATOM 29 N ILE 15 -12.145 73.893 -38.408 1.00 3.00 N ATOM 30 CA ILE 15 -12.451 72.466 -38.224 1.00 3.00 C ATOM 31 C ILE 15 -12.080 72.033 -36.818 1.00 3.00 C ATOM 32 O ILE 15 -11.429 72.764 -36.072 1.00 3.00 O ATOM 33 N ILE 16 -12.492 70.825 -36.470 1.00 3.00 N ATOM 34 CA ILE 16 -12.134 70.259 -35.184 1.00 3.00 C ATOM 35 C ILE 16 -11.191 69.157 -35.653 1.00 3.00 C ATOM 36 O ILE 16 -11.548 68.367 -36.544 1.00 3.00 O ATOM 37 N LYS 17 -9.970 69.148 -35.143 1.00 3.00 N ATOM 38 CA LYS 17 -8.998 68.098 -35.494 1.00 3.00 C ATOM 39 C LYS 17 -8.387 67.657 -34.176 1.00 3.00 C ATOM 40 O LYS 17 -7.973 68.497 -33.345 1.00 3.00 O ATOM 41 N ASN 18 -8.329 66.346 -33.993 1.00 3.00 N ATOM 42 CA ASN 18 -7.750 65.786 -32.789 1.00 3.00 C ATOM 43 C ASN 18 -8.309 66.429 -31.519 1.00 3.00 C ATOM 44 O ASN 18 -7.546 66.763 -30.616 1.00 3.00 O ATOM 45 N GLY 19 -9.631 66.604 -31.471 1.00 3.00 N ATOM 46 CA GLY 19 -10.267 67.154 -30.285 1.00 3.00 C ATOM 47 C GLY 19 -10.019 68.632 -29.979 1.00 3.00 C ATOM 48 O GLY 19 -10.282 69.056 -28.851 1.00 3.00 O ATOM 49 N LYS 20 -9.487 69.372 -30.945 1.00 3.00 N ATOM 50 CA LYS 20 -9.233 70.804 -30.797 1.00 3.00 C ATOM 51 C LYS 20 -9.758 71.596 -31.980 1.00 3.00 C ATOM 52 O LYS 20 -9.895 71.079 -33.104 1.00 3.00 O ATOM 53 N VAL 21 -10.034 72.877 -31.735 1.00 3.00 N ATOM 54 CA VAL 21 -10.545 73.748 -32.802 1.00 3.00 C ATOM 55 C VAL 21 -9.400 74.375 -33.607 1.00 3.00 C ATOM 56 O VAL 21 -8.427 74.891 -33.037 1.00 3.00 O ATOM 57 N CYS 22 -9.546 74.382 -34.933 1.00 3.00 N ATOM 58 CA CYS 22 -8.550 74.970 -35.856 1.00 3.00 C ATOM 59 C CYS 22 -9.153 76.035 -36.782 1.00 3.00 C ATOM 60 O CYS 22 -10.308 75.890 -37.199 1.00 3.00 O ATOM 61 N ILE 23 -8.380 77.079 -37.117 1.00 3.00 N ATOM 62 CA ILE 23 -8.837 78.119 -38.058 1.00 3.00 C ATOM 63 C ILE 23 -7.741 77.279 -38.715 1.00 3.00 C ATOM 64 O ILE 23 -6.842 76.771 -38.053 1.00 3.00 O ATOM 65 N ASN 24 -7.802 77.203 -40.046 1.00 3.00 N ATOM 66 CA ASN 24 -6.850 76.454 -40.843 1.00 3.00 C ATOM 67 C ASN 24 -5.520 77.205 -40.877 1.00 3.00 C ATOM 68 O ASN 24 -5.448 78.328 -41.377 1.00 3.00 O ATOM 69 N TYR 25 -4.461 76.570 -40.375 1.00 3.00 N ATOM 70 CA TYR 25 -3.154 77.200 -40.362 1.00 3.00 C ATOM 71 C TYR 25 -2.163 76.566 -41.319 1.00 3.00 C ATOM 72 O TYR 25 -0.968 76.759 -41.191 1.00 3.00 O ATOM 73 N GLU 26 -2.667 75.792 -42.279 1.00 9.00 N ATOM 74 CA GLU 26 -1.787 75.143 -43.237 1.00 9.00 C ATOM 75 C GLU 26 -1.464 73.716 -42.854 1.00 9.00 C ATOM 76 O GLU 26 -2.206 72.802 -43.197 1.00 9.00 O ATOM 77 N LYS 27 -0.387 73.518 -42.104 1.00 9.00 N ATOM 78 CA LYS 27 -0.017 72.164 -41.691 1.00 9.00 C ATOM 79 C LYS 27 -0.845 71.643 -40.512 1.00 9.00 C ATOM 80 O LYS 27 -0.804 70.452 -40.187 1.00 9.00 O ATOM 81 N LYS 28 -1.624 72.524 -39.902 1.00 9.00 N ATOM 82 CA LYS 28 -2.484 72.166 -38.778 1.00 9.00 C ATOM 83 C LYS 28 -3.500 73.281 -38.558 1.00 9.00 C ATOM 84 O LYS 28 -3.372 74.359 -39.144 1.00 9.00 O ATOM 85 N PRO 29 -4.534 72.997 -37.789 1.00 3.00 N ATOM 86 CA PRO 29 -5.520 74.020 -37.454 1.00 3.00 C ATOM 87 C PRO 29 -4.957 74.669 -36.179 1.00 3.00 C ATOM 88 O PRO 29 -4.047 74.114 -35.564 1.00 3.00 O ATOM 89 N ALA 30 -5.429 75.849 -35.840 1.00 3.00 N ATOM 90 CA ALA 30 -4.941 76.519 -34.641 1.00 3.00 C ATOM 91 C ALA 30 -6.102 77.203 -33.954 1.00 3.00 C ATOM 92 O ALA 30 -7.146 77.444 -34.565 1.00 3.00 O ATOM 93 N ILE 31 -5.920 77.477 -32.668 1.00 3.00 N ATOM 94 CA ILE 31 -6.927 78.148 -31.862 1.00 3.00 C ATOM 95 C ILE 31 -6.431 78.400 -30.456 1.00 3.00 C ATOM 96 O ILE 31 -6.156 79.566 -30.097 1.00 3.00 O ATOM 97 N ILE 32 -6.359 77.328 -29.666 1.00 3.00 N ATOM 98 CA ILE 32 -5.861 77.461 -28.291 1.00 3.00 C ATOM 99 C ILE 32 -4.410 77.946 -28.314 1.00 3.00 C ATOM 100 O ILE 32 -4.019 78.784 -27.493 1.00 3.00 O ATOM 101 N ASP 33 -3.613 77.424 -29.242 1.00 3.00 N ATOM 102 CA ASP 33 -2.210 77.872 -29.355 1.00 3.00 C ATOM 103 C ASP 33 -2.153 79.332 -29.790 1.00 3.00 C ATOM 104 O ASP 33 -1.248 80.049 -29.400 1.00 3.00 O ATOM 105 N ILE 34 -3.117 79.774 -30.589 1.00 3.00 N ATOM 106 CA ILE 34 -3.143 81.172 -30.983 1.00 3.00 C ATOM 107 C ILE 34 -3.404 82.021 -29.729 1.00 3.00 C ATOM 108 O ILE 34 -2.725 83.073 -29.505 1.00 3.00 O ATOM 109 N VAL 35 -4.354 81.565 -28.909 1.00 3.00 N ATOM 110 CA VAL 35 -4.683 82.280 -27.669 1.00 3.00 C ATOM 111 C VAL 35 -3.457 82.329 -26.748 1.00 3.00 C ATOM 112 O VAL 35 -3.197 83.353 -26.075 1.00 3.00 O ATOM 113 N LYS 36 -2.694 81.234 -26.748 1.00 3.00 N ATOM 114 CA LYS 36 -1.467 81.154 -25.934 1.00 3.00 C ATOM 115 C LYS 36 -0.655 82.102 -26.782 1.00 3.00 C ATOM 116 O LYS 36 0.318 82.709 -26.314 1.00 3.00 O ATOM 117 N GLU 37 -0.901 82.000 -28.102 1.00 3.00 N ATOM 118 CA GLU 37 -0.219 82.866 -29.047 1.00 3.00 C ATOM 119 C GLU 37 -0.412 84.304 -28.536 1.00 3.00 C ATOM 120 O GLU 37 -1.585 84.626 -28.312 1.00 3.00 O ATOM 121 N LEU 38 0.574 85.092 -28.195 1.00 3.00 N ATOM 122 CA LEU 38 0.377 86.444 -27.605 1.00 3.00 C ATOM 123 C LEU 38 0.687 86.484 -26.107 1.00 3.00 C ATOM 124 O LEU 38 0.930 87.502 -25.432 1.00 3.00 O ATOM 125 N ARG 39 0.659 85.359 -25.360 1.00 9.00 N ATOM 126 CA ARG 39 1.063 85.377 -23.964 1.00 9.00 C ATOM 127 C ARG 39 -0.000 85.697 -22.943 1.00 9.00 C ATOM 128 O ARG 39 -1.177 85.788 -23.258 1.00 9.00 O ATOM 129 N ASP 40 0.399 85.859 -21.680 1.00 9.00 N ATOM 130 CA ASP 40 -0.550 86.101 -20.588 1.00 9.00 C ATOM 131 C ASP 40 -0.871 87.588 -20.424 1.00 9.00 C ATOM 132 O ASP 40 -0.188 88.355 -19.693 1.00 9.00 O ATOM 133 N ASP 41 -1.775 88.071 -21.236 1.00 9.00 N ATOM 134 CA ASP 41 -2.199 89.437 -21.394 1.00 9.00 C ATOM 135 C ASP 41 -3.682 89.468 -21.786 1.00 9.00 C ATOM 136 O ASP 41 -4.133 88.531 -22.467 1.00 9.00 O ATOM 137 N GLY 42 -4.439 90.419 -21.305 1.00 9.00 N ATOM 138 CA GLY 42 -5.834 90.499 -21.671 1.00 9.00 C ATOM 139 C GLY 42 -6.084 90.549 -23.168 1.00 9.00 C ATOM 140 O GLY 42 -7.003 89.856 -23.584 1.00 9.00 O ATOM 141 N TYR 43 -5.302 91.342 -23.914 1.00 9.00 N ATOM 142 CA TYR 43 -5.616 91.401 -25.352 1.00 9.00 C ATOM 143 C TYR 43 -5.399 90.029 -25.959 1.00 9.00 C ATOM 144 O TYR 43 -6.073 89.741 -26.991 1.00 9.00 O ATOM 145 N LYS 44 -4.436 89.231 -25.521 1.00 9.00 N ATOM 146 CA LYS 44 -4.231 87.919 -26.147 1.00 9.00 C ATOM 147 C LYS 44 -5.406 86.994 -25.827 1.00 9.00 C ATOM 148 O LYS 44 -5.822 86.277 -26.730 1.00 9.00 O ATOM 149 N GLY 45 -5.971 87.158 -24.654 1.00 3.00 N ATOM 150 CA GLY 45 -7.175 86.363 -24.255 1.00 3.00 C ATOM 151 C GLY 45 -8.407 86.747 -25.063 1.00 3.00 C ATOM 152 O GLY 45 -9.068 85.925 -25.673 1.00 3.00 O ATOM 153 N PRO 46 -8.612 88.089 -25.134 1.00 3.00 N ATOM 154 CA PRO 46 -9.643 88.582 -26.025 1.00 3.00 C ATOM 155 C PRO 46 -9.578 88.054 -27.437 1.00 3.00 C ATOM 156 O PRO 46 -10.545 87.701 -28.071 1.00 3.00 O ATOM 157 N LEU 47 -8.356 88.218 -28.052 1.00 3.00 N ATOM 158 CA LEU 47 -8.148 87.859 -29.432 1.00 3.00 C ATOM 159 C LEU 47 -9.091 87.674 -30.635 1.00 3.00 C ATOM 160 O LEU 47 -9.814 86.689 -30.690 1.00 3.00 O ATOM 161 N LEU 48 -9.038 88.577 -31.608 1.00 3.00 N ATOM 162 CA LEU 48 -9.812 88.413 -32.843 1.00 3.00 C ATOM 163 C LEU 48 -8.910 87.645 -33.798 1.00 3.00 C ATOM 164 O LEU 48 -7.695 87.949 -33.910 1.00 3.00 O ATOM 165 N LEU 49 -9.465 86.651 -34.490 1.00 3.00 N ATOM 166 CA LEU 49 -8.678 85.916 -35.495 1.00 3.00 C ATOM 167 C LEU 49 -9.489 86.124 -36.810 1.00 3.00 C ATOM 168 O LEU 49 -10.696 85.797 -36.893 1.00 3.00 O ATOM 169 N ARG 50 -8.836 86.622 -37.839 1.00 3.00 N ATOM 170 CA ARG 50 -9.504 86.846 -39.101 1.00 3.00 C ATOM 171 C ARG 50 -8.912 85.865 -40.070 1.00 3.00 C ATOM 172 O ARG 50 -7.683 85.842 -40.221 1.00 3.00 O ATOM 173 N PHE 51 -9.760 85.084 -40.749 1.00 3.00 N ATOM 174 CA PHE 51 -9.276 84.083 -41.743 1.00 3.00 C ATOM 175 C PHE 51 -9.156 84.744 -43.121 1.00 3.00 C ATOM 176 O PHE 51 -10.165 85.173 -43.738 1.00 3.00 O ATOM 1289 N ALA 330 -14.299 86.091 -39.169 1.00 3.00 N ATOM 1290 CA ALA 330 -13.811 86.487 -37.830 1.00 3.00 C ATOM 1291 C ALA 330 -14.251 85.663 -36.644 1.00 3.00 C ATOM 1292 O ALA 330 -15.428 85.282 -36.549 1.00 3.00 O ATOM 1293 N VAL 331 -13.310 85.356 -35.748 1.00 3.00 N ATOM 1294 CA VAL 331 -13.627 84.574 -34.550 1.00 3.00 C ATOM 1295 C VAL 331 -13.022 85.338 -33.400 1.00 3.00 C ATOM 1296 O VAL 331 -11.954 85.890 -33.560 1.00 3.00 O ATOM 1297 N LEU 332 -13.714 85.377 -32.257 1.00 3.00 N ATOM 1298 CA LEU 332 -13.172 86.048 -31.082 1.00 3.00 C ATOM 1299 C LEU 332 -12.909 85.002 -29.979 1.00 3.00 C ATOM 1300 O LEU 332 -13.850 84.315 -29.526 1.00 3.00 O ATOM 1301 N ILE 333 -11.639 84.894 -29.559 1.00 3.00 N ATOM 1302 CA ILE 333 -11.255 83.934 -28.524 1.00 3.00 C ATOM 1303 C ILE 333 -11.178 84.637 -27.185 1.00 3.00 C ATOM 1304 O ILE 333 -10.620 85.733 -27.072 1.00 3.00 O ATOM 1305 N ALA 334 -11.777 84.019 -26.183 1.00 3.00 N ATOM 1306 CA ALA 334 -11.807 84.574 -24.830 1.00 3.00 C ATOM 1307 C ALA 334 -12.067 83.397 -23.906 1.00 3.00 C ATOM 1308 O ALA 334 -12.926 82.581 -24.215 1.00 3.00 O ATOM 1309 N PRO 335 -11.315 83.286 -22.800 1.00 3.00 N ATOM 1310 CA PRO 335 -11.473 82.185 -21.806 1.00 3.00 C ATOM 1311 C PRO 335 -12.748 82.356 -20.951 1.00 3.00 C ATOM 1312 O PRO 335 -13.003 83.450 -20.435 1.00 3.00 O ATOM 1313 N VAL 336 -13.513 81.273 -20.781 1.00 3.00 N ATOM 1314 CA VAL 336 -14.500 80.905 -20.249 1.00 3.00 C ATOM 1315 C VAL 336 -15.486 79.802 -19.806 1.00 3.00 C ATOM 1316 O VAL 336 -15.505 78.705 -20.369 1.00 3.00 O ATOM 1317 N LEU 337 -16.292 80.087 -18.777 1.00 3.00 N ATOM 1318 CA LEU 337 -17.248 79.114 -18.266 1.00 3.00 C ATOM 1319 C LEU 337 -18.537 79.788 -17.857 1.00 3.00 C ATOM 1320 O LEU 337 -18.535 80.941 -17.466 1.00 3.00 O ATOM 1321 N GLU 338 -19.637 79.034 -17.910 1.00 3.00 N ATOM 1322 CA GLU 338 -20.974 79.492 -17.539 1.00 3.00 C ATOM 1323 C GLU 338 -21.029 80.222 -16.215 1.00 3.00 C ATOM 1324 O GLU 338 -21.662 81.267 -16.103 1.00 3.00 O ATOM 1325 N LEU 339 -20.412 79.615 -15.209 1.00 3.00 N ATOM 1326 CA LEU 339 -20.410 80.145 -13.843 1.00 3.00 C ATOM 1327 C LEU 339 -19.185 80.956 -13.445 1.00 3.00 C ATOM 1328 O LEU 339 -18.906 81.111 -12.252 1.00 3.00 O ATOM 1329 N PHE 340 -18.445 81.475 -14.416 1.00 3.00 N ATOM 1330 CA PHE 340 -17.276 82.252 -14.067 1.00 3.00 C ATOM 1331 C PHE 340 -17.229 83.568 -14.810 1.00 3.00 C ATOM 1332 O PHE 340 -17.352 84.638 -14.204 1.00 3.00 O ATOM 1333 N SER 341 -17.149 83.483 -16.135 1.00 3.00 N ATOM 1334 CA SER 341 -17.019 84.682 -16.940 1.00 3.00 C ATOM 1335 C SER 341 -15.520 84.357 -18.059 1.00 3.00 C ATOM 1336 O SER 341 -14.532 83.746 -17.675 1.00 3.00 O ATOM 1337 N GLN 342 -15.540 85.078 -19.179 1.00 3.00 N ATOM 1338 CA GLN 342 -14.364 85.137 -20.021 1.00 3.00 C ATOM 1339 C GLN 342 -13.731 86.525 -20.126 1.00 3.00 C ATOM 1340 O GLN 342 -14.363 87.535 -19.758 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 228 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 77.05 58.6 87 23.9 364 ARMSMC SECONDARY STRUCTURE . . 62.97 75.0 40 35.7 112 ARMSMC SURFACE . . . . . . . . 77.02 55.3 47 24.0 196 ARMSMC BURIED . . . . . . . . 77.08 62.5 40 23.8 168 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 164 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 153 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 52 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 91 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 73 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 138 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 108 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 43 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 81 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 57 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 64 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 56 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 16 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 45 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 19 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 16 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 4 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 4.15 (Number of atoms: 57) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 4.15 57 31.1 183 CRMSCA CRN = ALL/NP . . . . . 0.0728 CRMSCA SECONDARY STRUCTURE . . 2.53 30 53.6 56 CRMSCA SURFACE . . . . . . . . 5.40 30 30.3 99 CRMSCA BURIED . . . . . . . . 1.97 27 32.1 84 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 4.20 228 25.2 903 CRMSMC SECONDARY STRUCTURE . . 2.54 120 43.2 278 CRMSMC SURFACE . . . . . . . . 5.48 120 24.5 490 CRMSMC BURIED . . . . . . . . 1.98 108 26.2 413 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 758 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 660 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 233 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 434 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 324 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 4.20 228 15.3 1490 CRMSALL SECONDARY STRUCTURE . . 2.54 120 26.3 457 CRMSALL SURFACE . . . . . . . . 5.48 120 14.5 830 CRMSALL BURIED . . . . . . . . 1.98 108 16.4 660 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.559 0.365 0.388 57 31.1 183 ERRCA SECONDARY STRUCTURE . . 2.058 0.391 0.442 30 53.6 56 ERRCA SURFACE . . . . . . . . 3.326 0.377 0.359 30 30.3 99 ERRCA BURIED . . . . . . . . 1.705 0.351 0.422 27 32.1 84 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.546 0.362 0.381 228 25.2 903 ERRMC SECONDARY STRUCTURE . . 2.034 0.391 0.443 120 43.2 278 ERRMC SURFACE . . . . . . . . 3.331 0.377 0.354 120 24.5 490 ERRMC BURIED . . . . . . . . 1.673 0.346 0.411 108 26.2 413 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 758 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 660 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 233 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 434 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 324 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.546 0.362 0.381 228 15.3 1490 ERRALL SECONDARY STRUCTURE . . 2.034 0.391 0.443 120 26.3 457 ERRALL SURFACE . . . . . . . . 3.331 0.377 0.354 120 14.5 830 ERRALL BURIED . . . . . . . . 1.673 0.346 0.411 108 16.4 660 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 7 34 40 50 55 57 183 DISTCA CA (P) 3.83 18.58 21.86 27.32 30.05 183 DISTCA CA (RMS) 0.80 1.36 1.59 2.36 2.99 DISTCA ALL (N) 42 128 161 199 221 228 1490 DISTALL ALL (P) 2.82 8.59 10.81 13.36 14.83 1490 DISTALL ALL (RMS) 0.78 1.30 1.60 2.24 2.99 DISTALL END of the results output