####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 25 ( 217), selected 25 , name T0547TS218_1_1-D3 # Molecule2: number of CA atoms 79 ( 644), selected 25 , name T0547-D3.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0547TS218_1_1-D3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 344 - 365 4.93 6.42 LONGEST_CONTINUOUS_SEGMENT: 22 345 - 366 4.67 6.60 LCS_AVERAGE: 27.70 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 357 - 364 1.54 20.79 LCS_AVERAGE: 7.44 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 358 - 363 0.86 20.89 LCS_AVERAGE: 5.22 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 25 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT E 343 E 343 3 5 20 3 3 4 5 5 5 5 6 7 9 12 13 14 18 18 20 22 23 23 24 LCS_GDT Y 344 Y 344 4 5 22 3 4 4 5 5 5 6 8 11 13 14 18 18 19 22 22 23 23 23 24 LCS_GDT A 345 A 345 4 5 22 3 4 4 5 5 6 9 11 14 17 19 19 20 22 22 22 23 23 23 24 LCS_GDT E 346 E 346 4 5 22 3 4 4 5 5 5 6 9 12 17 19 19 20 22 22 22 23 23 23 24 LCS_GDT N 347 N 347 4 5 22 3 4 5 6 7 10 11 11 14 17 19 19 20 22 22 22 23 23 23 24 LCS_GDT K 348 K 348 4 5 22 3 4 5 6 7 10 11 11 14 17 19 19 20 22 22 22 23 23 23 24 LCS_GDT L 349 L 349 4 6 22 3 4 5 5 7 10 11 11 14 17 19 19 20 22 22 22 23 23 23 24 LCS_GDT I 350 I 350 4 6 22 3 4 5 6 7 10 11 11 14 17 19 19 20 22 22 22 23 23 23 24 LCS_GDT L 351 L 351 4 6 22 3 4 5 5 6 10 10 11 14 17 19 19 20 22 22 22 23 23 23 24 LCS_GDT K 352 K 352 4 6 22 3 4 5 5 6 10 10 11 14 17 19 19 20 22 22 22 23 23 23 24 LCS_GDT K 353 K 353 3 6 22 3 3 3 5 6 8 10 11 14 17 19 19 20 22 22 22 23 23 23 24 LCS_GDT Q 354 Q 354 3 6 22 0 3 3 5 6 7 8 11 14 17 19 19 20 22 22 22 23 23 23 24 LCS_GDT N 355 N 355 3 4 22 0 3 3 6 6 9 11 11 14 17 19 19 20 22 22 22 23 23 23 24 LCS_GDT P 356 P 356 3 4 22 3 4 5 6 7 10 11 11 14 17 19 19 20 22 22 22 23 23 23 24 LCS_GDT K 357 K 357 3 8 22 3 3 4 6 8 10 11 11 14 17 19 19 20 22 22 22 23 23 23 24 LCS_GDT L 358 L 358 6 8 22 3 5 6 7 8 10 10 11 14 17 19 19 20 22 22 22 23 23 23 24 LCS_GDT I 359 I 359 6 8 22 3 5 6 7 8 8 10 11 14 17 19 19 20 22 22 22 23 23 23 24 LCS_GDT D 360 D 360 6 8 22 3 5 6 7 8 8 11 11 14 17 19 19 20 22 22 22 23 23 23 24 LCS_GDT E 361 E 361 6 8 22 3 5 6 7 8 10 10 11 14 17 19 19 20 22 22 22 23 23 23 24 LCS_GDT L 362 L 362 6 8 22 3 5 6 7 8 8 9 9 11 12 16 19 20 22 22 22 23 23 23 24 LCS_GDT Y 363 Y 363 6 8 22 3 5 6 7 8 8 9 9 11 12 15 16 17 22 22 22 23 23 23 24 LCS_GDT D 364 D 364 4 8 22 3 4 5 7 8 9 11 11 14 17 19 19 20 22 22 22 23 23 23 24 LCS_GDT L 365 L 365 3 3 22 3 4 5 6 7 9 11 11 14 16 19 19 20 22 22 22 23 23 23 24 LCS_GDT Y 366 Y 366 3 3 22 3 3 4 5 6 8 11 11 12 15 17 18 20 22 22 22 23 23 23 24 LCS_GDT K 367 K 367 3 3 21 3 3 3 3 3 5 5 8 9 11 13 14 15 16 18 18 19 22 22 23 LCS_AVERAGE LCS_A: 13.45 ( 5.22 7.44 27.70 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 5 6 7 8 10 11 11 14 17 19 19 20 22 22 22 23 23 23 24 GDT PERCENT_AT 3.80 6.33 7.59 8.86 10.13 12.66 13.92 13.92 17.72 21.52 24.05 24.05 25.32 27.85 27.85 27.85 29.11 29.11 29.11 30.38 GDT RMS_LOCAL 0.04 0.57 0.86 1.35 1.54 2.43 2.45 2.45 3.37 3.86 4.07 4.07 4.29 4.67 4.67 4.67 5.18 5.18 5.18 5.57 GDT RMS_ALL_AT 15.81 21.29 20.89 21.01 20.79 7.62 7.08 7.08 7.08 6.88 6.60 6.60 6.64 6.60 6.60 6.60 6.32 6.32 6.32 6.27 # Checking swapping # possible swapping detected: E 343 E 343 # possible swapping detected: Y 366 Y 366 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA E 343 E 343 17.823 0 0.427 0.785 24.139 0.000 0.000 LGA Y 344 Y 344 15.633 0 0.604 1.175 27.980 0.000 0.000 LGA A 345 A 345 8.224 0 0.055 0.053 11.061 4.881 5.905 LGA E 346 E 346 5.883 0 0.622 0.686 12.428 30.833 15.767 LGA N 347 N 347 0.719 0 0.635 1.245 6.418 81.786 56.131 LGA K 348 K 348 0.844 0 0.625 1.134 6.979 81.786 66.772 LGA L 349 L 349 3.255 0 0.087 0.128 9.579 50.357 30.060 LGA I 350 I 350 2.957 0 0.208 1.118 5.639 57.619 46.429 LGA L 351 L 351 7.825 0 0.550 1.318 13.889 10.357 5.179 LGA K 352 K 352 7.032 0 0.063 0.732 9.597 12.500 8.360 LGA K 353 K 353 6.924 0 0.574 1.208 7.618 11.905 21.746 LGA Q 354 Q 354 4.986 0 0.614 0.902 6.622 31.786 23.704 LGA N 355 N 355 2.246 0 0.649 0.973 6.096 69.048 49.167 LGA P 356 P 356 1.169 0 0.671 0.557 2.835 77.619 76.803 LGA K 357 K 357 2.719 0 0.515 0.785 11.958 57.500 30.317 LGA L 358 L 358 5.336 0 0.125 0.313 10.533 29.881 16.548 LGA I 359 I 359 5.709 0 0.187 1.609 10.613 26.429 16.131 LGA D 360 D 360 3.853 0 0.065 0.797 8.567 46.667 29.107 LGA E 361 E 361 6.148 0 0.081 0.960 12.298 18.690 9.259 LGA L 362 L 362 9.462 0 0.039 1.275 14.213 3.571 1.786 LGA Y 363 Y 363 7.637 0 0.281 0.359 17.156 13.929 5.040 LGA D 364 D 364 1.769 0 0.388 0.351 6.571 73.690 53.274 LGA L 365 L 365 1.570 0 0.575 1.371 5.743 65.476 51.131 LGA Y 366 Y 366 3.311 0 0.592 1.135 8.346 35.833 22.738 LGA K 367 K 367 9.610 0 0.667 1.576 14.582 3.452 1.534 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 25 100 100 100.00 217 217 100.00 79 SUMMARY(RMSD_GDC): 6.183 6.099 8.509 11.337 8.138 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 25 79 4.0 11 2.45 14.241 13.486 0.432 LGA_LOCAL RMSD: 2.445 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 7.078 Number of assigned atoms: 25 Std_ASGN_ATOMS RMSD: 6.183 Standard rmsd on all 25 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.042386 * X + -0.307149 * Y + -0.950717 * Z + -45.102470 Y_new = -0.972393 * X + 0.231235 * Y + -0.031353 * Z + 72.361015 Z_new = 0.229469 * X + 0.923141 * Y + -0.308470 * Z + -15.550892 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.614358 -0.231532 1.893284 [DEG: -92.4959 -13.2658 108.4772 ] ZXZ: -1.537830 1.884381 0.243636 [DEG: -88.1111 107.9671 13.9593 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0547TS218_1_1-D3 REMARK 2: T0547-D3.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0547TS218_1_1-D3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 25 79 4.0 11 2.45 13.486 6.18 REMARK ---------------------------------------------------------- MOLECULE T0547TS218_1_1-D3 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 1 REMARK PFRMAT TS REMARK TARGET T0547 REMARK PARENT N/A ATOM 2630 N GLU 343 -21.317 62.243 5.230 1.00 0.00 N ATOM 2631 CA GLU 343 -20.833 61.094 4.467 1.00 0.00 C ATOM 2632 C GLU 343 -21.834 60.538 3.455 1.00 0.00 C ATOM 2633 O GLU 343 -21.452 60.026 2.399 1.00 0.00 O ATOM 2634 CB GLU 343 -20.483 59.938 5.406 1.00 0.00 C ATOM 2635 CG GLU 343 -19.238 60.172 6.244 1.00 0.00 C ATOM 2636 CD GLU 343 -18.976 59.049 7.228 1.00 0.00 C ATOM 2637 OE1 GLU 343 -19.807 58.120 7.303 1.00 0.00 O ATOM 2638 OE2 GLU 343 -17.940 59.098 7.923 1.00 0.00 O ATOM 2639 N TYR 344 -23.126 60.637 3.779 1.00 0.00 N ATOM 2640 CA TYR 344 -24.182 60.125 2.920 1.00 0.00 C ATOM 2641 C TYR 344 -24.850 61.172 2.034 1.00 0.00 C ATOM 2642 O TYR 344 -25.320 60.845 0.944 1.00 0.00 O ATOM 2643 CB TYR 344 -25.300 59.501 3.758 1.00 0.00 C ATOM 2644 CG TYR 344 -24.851 58.327 4.600 1.00 0.00 C ATOM 2645 CD1 TYR 344 -24.606 58.479 5.959 1.00 0.00 C ATOM 2646 CD2 TYR 344 -24.674 57.072 4.033 1.00 0.00 C ATOM 2647 CE1 TYR 344 -24.195 57.412 6.736 1.00 0.00 C ATOM 2648 CE2 TYR 344 -24.264 55.994 4.795 1.00 0.00 C ATOM 2649 CZ TYR 344 -24.025 56.174 6.156 1.00 0.00 C ATOM 2650 OH TYR 344 -23.617 55.110 6.928 1.00 0.00 H ATOM 2651 N ALA 345 -24.910 62.438 2.468 1.00 0.00 N ATOM 2652 CA ALA 345 -25.681 63.459 1.770 1.00 0.00 C ATOM 2653 C ALA 345 -25.176 64.867 2.052 1.00 0.00 C ATOM 2654 O ALA 345 -24.611 65.141 3.113 1.00 0.00 O ATOM 2655 CB ALA 345 -27.140 63.405 2.197 1.00 0.00 C ATOM 2656 N GLU 346 -25.383 65.770 1.091 1.00 0.00 N ATOM 2657 CA GLU 346 -25.078 67.181 1.266 1.00 0.00 C ATOM 2658 C GLU 346 -26.408 67.851 1.609 1.00 0.00 C ATOM 2659 O GLU 346 -27.305 67.950 0.767 1.00 0.00 O ATOM 2660 CB GLU 346 -24.488 67.765 -0.020 1.00 0.00 C ATOM 2661 CG GLU 346 -24.114 69.235 0.081 1.00 0.00 C ATOM 2662 CD GLU 346 -23.445 69.753 -1.177 1.00 0.00 C ATOM 2663 OE1 GLU 346 -23.291 68.966 -2.134 1.00 0.00 O ATOM 2664 OE2 GLU 346 -23.077 70.946 -1.205 1.00 0.00 O ATOM 2665 N ASN 347 -26.550 68.318 2.851 1.00 0.00 N ATOM 2666 CA ASN 347 -27.807 68.879 3.324 1.00 0.00 C ATOM 2667 C ASN 347 -27.849 70.397 3.269 1.00 0.00 C ATOM 2668 O ASN 347 -26.888 71.071 3.653 1.00 0.00 O ATOM 2669 CB ASN 347 -28.058 68.480 4.779 1.00 0.00 C ATOM 2670 CG ASN 347 -28.249 66.985 4.949 1.00 0.00 C ATOM 2671 OD1 ASN 347 -29.183 66.402 4.398 1.00 0.00 O ATOM 2672 ND2 ASN 347 -27.363 66.360 5.714 1.00 0.00 N ATOM 2673 N LYS 348 -28.969 70.940 2.789 1.00 0.00 N ATOM 2674 CA LYS 348 -29.185 72.378 2.721 1.00 0.00 C ATOM 2675 C LYS 348 -30.247 72.709 3.762 1.00 0.00 C ATOM 2676 O LYS 348 -31.398 72.277 3.652 1.00 0.00 O ATOM 2677 CB LYS 348 -29.662 72.783 1.325 1.00 0.00 C ATOM 2678 CG LYS 348 -28.638 72.547 0.226 1.00 0.00 C ATOM 2679 CD LYS 348 -29.209 72.884 -1.142 1.00 0.00 C ATOM 2680 CE LYS 348 -30.242 71.858 -1.578 1.00 0.00 C ATOM 2681 NZ LYS 348 -30.801 72.169 -2.922 1.00 0.00 N ATOM 2682 N LEU 349 -29.860 73.479 4.779 1.00 0.00 N ATOM 2683 CA LEU 349 -30.726 73.772 5.910 1.00 0.00 C ATOM 2684 C LEU 349 -31.431 75.113 5.777 1.00 0.00 C ATOM 2685 O LEU 349 -30.801 76.155 5.571 1.00 0.00 O ATOM 2686 CB LEU 349 -29.917 73.811 7.208 1.00 0.00 C ATOM 2687 CG LEU 349 -29.198 72.517 7.598 1.00 0.00 C ATOM 2688 CD1 LEU 349 -28.376 72.720 8.861 1.00 0.00 C ATOM 2689 CD2 LEU 349 -30.200 71.403 7.856 1.00 0.00 C ATOM 2690 N ILE 350 -32.759 75.068 5.900 1.00 0.00 N ATOM 2691 CA ILE 350 -33.611 76.217 5.616 1.00 0.00 C ATOM 2692 C ILE 350 -34.389 76.812 6.781 1.00 0.00 C ATOM 2693 O ILE 350 -34.578 76.182 7.828 1.00 0.00 O ATOM 2694 CB ILE 350 -34.693 75.873 4.575 1.00 0.00 C ATOM 2695 CG1 ILE 350 -35.591 74.746 5.091 1.00 0.00 C ATOM 2696 CG2 ILE 350 -34.053 75.421 3.271 1.00 0.00 C ATOM 2697 CD1 ILE 350 -36.801 74.483 4.222 1.00 0.00 C ATOM 2698 N LEU 351 -34.840 78.055 6.578 1.00 0.00 N ATOM 2699 CA LEU 351 -35.766 78.694 7.505 1.00 0.00 C ATOM 2700 C LEU 351 -37.240 78.337 7.320 1.00 0.00 C ATOM 2701 O LEU 351 -38.006 78.461 8.280 1.00 0.00 O ATOM 2702 CB LEU 351 -35.689 80.216 7.374 1.00 0.00 C ATOM 2703 CG LEU 351 -34.358 80.864 7.761 1.00 0.00 C ATOM 2704 CD1 LEU 351 -34.391 82.360 7.491 1.00 0.00 C ATOM 2705 CD2 LEU 351 -34.068 80.654 9.239 1.00 0.00 C ATOM 2706 N LYS 352 -37.674 77.897 6.126 1.00 0.00 N ATOM 2707 CA LYS 352 -39.046 77.434 5.909 1.00 0.00 C ATOM 2708 C LYS 352 -39.192 76.023 6.467 1.00 0.00 C ATOM 2709 O LYS 352 -38.423 75.118 6.132 1.00 0.00 O ATOM 2710 CB LYS 352 -39.376 77.418 4.415 1.00 0.00 C ATOM 2711 CG LYS 352 -40.837 77.134 4.105 1.00 0.00 C ATOM 2712 CD LYS 352 -41.137 77.331 2.628 1.00 0.00 C ATOM 2713 CE LYS 352 -40.810 76.080 1.828 1.00 0.00 C ATOM 2714 NZ LYS 352 -41.240 76.201 0.408 1.00 0.00 N ATOM 2715 N LYS 353 -40.181 75.806 7.330 1.00 0.00 N ATOM 2716 CA LYS 353 -40.200 74.615 8.165 1.00 0.00 C ATOM 2717 C LYS 353 -41.446 73.765 7.997 1.00 0.00 C ATOM 2718 O LYS 353 -42.409 74.179 7.351 1.00 0.00 O ATOM 2719 CB LYS 353 -40.127 74.997 9.645 1.00 0.00 C ATOM 2720 CG LYS 353 -38.835 75.692 10.044 1.00 0.00 C ATOM 2721 CD LYS 353 -38.836 76.052 11.521 1.00 0.00 C ATOM 2722 CE LYS 353 -37.487 76.601 11.955 1.00 0.00 C ATOM 2723 NZ LYS 353 -37.276 77.997 11.482 1.00 0.00 N ATOM 2724 N GLN 354 -41.424 72.565 8.586 1.00 0.00 N ATOM 2725 CA GLN 354 -42.591 71.698 8.675 1.00 0.00 C ATOM 2726 C GLN 354 -43.803 72.325 9.355 1.00 0.00 C ATOM 2727 O GLN 354 -44.942 71.983 9.036 1.00 0.00 O ATOM 2728 CB GLN 354 -42.260 70.436 9.473 1.00 0.00 C ATOM 2729 CG GLN 354 -41.948 70.692 10.938 1.00 0.00 C ATOM 2730 CD GLN 354 -41.485 69.443 11.663 1.00 0.00 C ATOM 2731 OE1 GLN 354 -41.506 68.346 11.104 1.00 0.00 O ATOM 2732 NE2 GLN 354 -41.065 69.606 12.911 1.00 0.00 N ATOM 2733 N ASN 355 -43.609 73.250 10.301 1.00 0.00 N ATOM 2734 CA ASN 355 -44.747 73.913 10.911 1.00 0.00 C ATOM 2735 C ASN 355 -45.446 74.922 9.994 1.00 0.00 C ATOM 2736 O ASN 355 -46.657 75.072 10.149 1.00 0.00 O ATOM 2737 CB ASN 355 -44.313 74.685 12.158 1.00 0.00 C ATOM 2738 CG ASN 355 -43.368 75.827 11.837 1.00 0.00 C ATOM 2739 OD1 ASN 355 -42.309 75.621 11.244 1.00 0.00 O ATOM 2740 ND2 ASN 355 -43.750 77.037 12.230 1.00 0.00 N ATOM 2741 N PRO 356 -44.836 75.649 9.039 1.00 0.00 N ATOM 2742 CA PRO 356 -45.564 76.256 7.923 1.00 0.00 C ATOM 2743 C PRO 356 -45.844 75.319 6.742 1.00 0.00 C ATOM 2744 O PRO 356 -46.638 75.677 5.876 1.00 0.00 O ATOM 2745 CB PRO 356 -44.658 77.401 7.467 1.00 0.00 C ATOM 2746 CG PRO 356 -43.278 76.940 7.799 1.00 0.00 C ATOM 2747 CD PRO 356 -43.397 76.154 9.076 1.00 0.00 C ATOM 2748 N LYS 357 -45.230 74.125 6.661 1.00 0.00 N ATOM 2749 CA LYS 357 -45.532 73.147 5.617 1.00 0.00 C ATOM 2750 C LYS 357 -45.641 71.683 6.060 1.00 0.00 C ATOM 2751 O LYS 357 -44.664 70.929 6.100 1.00 0.00 O ATOM 2752 CB LYS 357 -44.446 73.161 4.540 1.00 0.00 C ATOM 2753 CG LYS 357 -44.734 72.252 3.357 1.00 0.00 C ATOM 2754 CD LYS 357 -43.644 72.355 2.303 1.00 0.00 C ATOM 2755 CE LYS 357 -43.930 71.442 1.121 1.00 0.00 C ATOM 2756 NZ LYS 357 -42.860 71.520 0.087 1.00 0.00 N ATOM 2757 N LEU 358 -46.847 71.231 6.412 1.00 0.00 N ATOM 2758 CA LEU 358 -47.023 69.862 6.878 1.00 0.00 C ATOM 2759 C LEU 358 -46.935 68.737 5.852 1.00 0.00 C ATOM 2760 O LEU 358 -46.684 67.590 6.238 1.00 0.00 O ATOM 2761 CB LEU 358 -48.403 69.687 7.516 1.00 0.00 C ATOM 2762 CG LEU 358 -48.652 70.458 8.813 1.00 0.00 C ATOM 2763 CD1 LEU 358 -50.093 70.289 9.271 1.00 0.00 C ATOM 2764 CD2 LEU 358 -47.740 69.955 9.922 1.00 0.00 C ATOM 2765 N ILE 359 -47.132 69.017 4.556 1.00 0.00 N ATOM 2766 CA ILE 359 -47.247 67.983 3.524 1.00 0.00 C ATOM 2767 C ILE 359 -46.143 66.921 3.456 1.00 0.00 C ATOM 2768 O ILE 359 -46.456 65.733 3.542 1.00 0.00 O ATOM 2769 CB ILE 359 -47.263 68.595 2.111 1.00 0.00 C ATOM 2770 CG1 ILE 359 -48.492 69.489 1.931 1.00 0.00 C ATOM 2771 CG2 ILE 359 -47.303 67.501 1.056 1.00 0.00 C ATOM 2772 CD1 ILE 359 -49.806 68.751 2.060 1.00 0.00 C ATOM 2773 N ASP 360 -44.860 67.282 3.305 1.00 0.00 N ATOM 2774 CA ASP 360 -43.817 66.264 3.199 1.00 0.00 C ATOM 2775 C ASP 360 -43.585 65.535 4.514 1.00 0.00 C ATOM 2776 O ASP 360 -43.313 64.327 4.501 1.00 0.00 O ATOM 2777 CB ASP 360 -42.488 66.899 2.786 1.00 0.00 C ATOM 2778 CG ASP 360 -41.401 65.870 2.543 1.00 0.00 C ATOM 2779 OD1 ASP 360 -41.571 65.029 1.635 1.00 0.00 O ATOM 2780 OD2 ASP 360 -40.379 65.905 3.261 1.00 0.00 O ATOM 2781 N GLU 361 -43.689 66.247 5.641 1.00 0.00 N ATOM 2782 CA GLU 361 -43.531 65.654 6.962 1.00 0.00 C ATOM 2783 C GLU 361 -44.595 64.595 7.239 1.00 0.00 C ATOM 2784 O GLU 361 -44.264 63.466 7.597 1.00 0.00 O ATOM 2785 CB GLU 361 -43.647 66.726 8.048 1.00 0.00 C ATOM 2786 CG GLU 361 -43.449 66.202 9.460 1.00 0.00 C ATOM 2787 CD GLU 361 -43.536 67.297 10.506 1.00 0.00 C ATOM 2788 OE1 GLU 361 -43.739 68.469 10.123 1.00 0.00 O ATOM 2789 OE2 GLU 361 -43.402 66.983 11.707 1.00 0.00 O ATOM 2790 N LEU 362 -45.876 64.946 7.079 1.00 0.00 N ATOM 2791 CA LEU 362 -46.965 64.033 7.392 1.00 0.00 C ATOM 2792 C LEU 362 -47.142 62.904 6.386 1.00 0.00 C ATOM 2793 O LEU 362 -47.355 61.756 6.775 1.00 0.00 O ATOM 2794 CB LEU 362 -48.297 64.784 7.440 1.00 0.00 C ATOM 2795 CG LEU 362 -48.482 65.763 8.602 1.00 0.00 C ATOM 2796 CD1 LEU 362 -49.762 66.566 8.429 1.00 0.00 C ATOM 2797 CD2 LEU 362 -48.563 65.017 9.925 1.00 0.00 C ATOM 2798 N TYR 363 -47.062 63.204 5.086 1.00 0.00 N ATOM 2799 CA TYR 363 -47.429 62.222 4.077 1.00 0.00 C ATOM 2800 C TYR 363 -46.294 61.726 3.190 1.00 0.00 C ATOM 2801 O TYR 363 -46.513 60.826 2.377 1.00 0.00 O ATOM 2802 CB TYR 363 -48.475 62.800 3.122 1.00 0.00 C ATOM 2803 CG TYR 363 -49.758 63.222 3.802 1.00 0.00 C ATOM 2804 CD1 TYR 363 -50.053 64.565 3.992 1.00 0.00 C ATOM 2805 CD2 TYR 363 -50.670 62.276 4.251 1.00 0.00 C ATOM 2806 CE1 TYR 363 -51.223 64.960 4.613 1.00 0.00 C ATOM 2807 CE2 TYR 363 -51.845 62.651 4.873 1.00 0.00 C ATOM 2808 CZ TYR 363 -52.116 64.007 5.052 1.00 0.00 C ATOM 2809 OH TYR 363 -53.282 64.398 5.670 1.00 0.00 H ATOM 2810 N ASP 364 -45.075 62.281 3.312 1.00 0.00 N ATOM 2811 CA ASP 364 -43.937 61.988 2.431 1.00 0.00 C ATOM 2812 C ASP 364 -44.159 62.357 0.962 1.00 0.00 C ATOM 2813 O ASP 364 -43.607 61.751 0.044 1.00 0.00 O ATOM 2814 CB ASP 364 -43.612 60.494 2.454 1.00 0.00 C ATOM 2815 CG ASP 364 -43.136 60.022 3.814 1.00 0.00 C ATOM 2816 OD1 ASP 364 -42.209 60.647 4.369 1.00 0.00 O ATOM 2817 OD2 ASP 364 -43.692 59.026 4.325 1.00 0.00 O ATOM 2818 N LEU 365 -44.990 63.378 0.727 1.00 0.00 N ATOM 2819 CA LEU 365 -45.358 63.782 -0.623 1.00 0.00 C ATOM 2820 C LEU 365 -44.382 64.746 -1.280 1.00 0.00 C ATOM 2821 O LEU 365 -43.918 65.717 -0.679 1.00 0.00 O ATOM 2822 CB LEU 365 -46.719 64.483 -0.621 1.00 0.00 C ATOM 2823 CG LEU 365 -47.909 63.650 -0.142 1.00 0.00 C ATOM 2824 CD1 LEU 365 -49.176 64.489 -0.117 1.00 0.00 C ATOM 2825 CD2 LEU 365 -48.141 62.464 -1.065 1.00 0.00 C ATOM 2826 N TYR 366 -44.086 64.443 -2.544 1.00 0.00 N ATOM 2827 CA TYR 366 -43.173 65.238 -3.347 1.00 0.00 C ATOM 2828 C TYR 366 -43.759 66.589 -3.746 1.00 0.00 C ATOM 2829 O TYR 366 -44.872 66.701 -4.266 1.00 0.00 O ATOM 2830 CB TYR 366 -42.815 64.501 -4.639 1.00 0.00 C ATOM 2831 CG TYR 366 -41.874 65.266 -5.540 1.00 0.00 C ATOM 2832 CD1 TYR 366 -40.523 65.371 -5.233 1.00 0.00 C ATOM 2833 CD2 TYR 366 -42.338 65.882 -6.696 1.00 0.00 C ATOM 2834 CE1 TYR 366 -39.654 66.068 -6.051 1.00 0.00 C ATOM 2835 CE2 TYR 366 -41.484 66.584 -7.526 1.00 0.00 C ATOM 2836 CZ TYR 366 -40.132 66.673 -7.193 1.00 0.00 C ATOM 2837 OH TYR 366 -39.270 67.369 -8.009 1.00 0.00 H ATOM 2838 N LYS 367 -42.952 67.611 -3.478 1.00 0.00 N ATOM 2839 CA LYS 367 -43.143 68.940 -4.031 1.00 0.00 C ATOM 2840 C LYS 367 -41.911 69.282 -4.857 1.00 0.00 C ATOM 2841 O LYS 367 -40.795 69.064 -4.381 1.00 0.00 O ATOM 2842 CB LYS 367 -43.317 69.967 -2.909 1.00 0.00 C ATOM 2843 CG LYS 367 -44.499 69.692 -1.994 1.00 0.00 C ATOM 2844 CD LYS 367 -45.819 69.889 -2.721 1.00 0.00 C ATOM 2845 CE LYS 367 -47.001 69.684 -1.788 1.00 0.00 C ATOM 2846 NZ LYS 367 -48.300 69.756 -2.511 1.00 0.00 N TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 217 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 83.48 39.6 48 30.8 156 ARMSMC SECONDARY STRUCTURE . . 72.55 47.6 21 20.2 104 ARMSMC SURFACE . . . . . . . . 85.49 31.2 32 30.8 104 ARMSMC BURIED . . . . . . . . 79.33 56.2 16 30.8 52 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 82.44 41.7 24 32.9 73 ARMSSC1 RELIABLE SIDE CHAINS . 82.44 41.7 24 33.3 72 ARMSSC1 SECONDARY STRUCTURE . . 82.19 27.3 11 22.4 49 ARMSSC1 SURFACE . . . . . . . . 90.75 37.5 16 32.0 50 ARMSSC1 BURIED . . . . . . . . 62.60 50.0 8 34.8 23 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 82.54 54.2 24 37.5 64 ARMSSC2 RELIABLE SIDE CHAINS . 73.36 58.8 17 42.5 40 ARMSSC2 SECONDARY STRUCTURE . . 92.70 45.5 11 26.2 42 ARMSSC2 SURFACE . . . . . . . . 74.11 62.5 16 36.4 44 ARMSSC2 BURIED . . . . . . . . 97.23 37.5 8 40.0 20 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 89.11 22.2 9 52.9 17 ARMSSC3 RELIABLE SIDE CHAINS . 91.60 25.0 8 53.3 15 ARMSSC3 SECONDARY STRUCTURE . . 91.58 33.3 3 30.0 10 ARMSSC3 SURFACE . . . . . . . . 77.82 25.0 8 50.0 16 ARMSSC3 BURIED . . . . . . . . 151.74 0.0 1 100.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 62.92 80.0 5 55.6 9 ARMSSC4 RELIABLE SIDE CHAINS . 62.92 80.0 5 55.6 9 ARMSSC4 SECONDARY STRUCTURE . . 4.43 100.0 2 40.0 5 ARMSSC4 SURFACE . . . . . . . . 70.08 75.0 4 50.0 8 ARMSSC4 BURIED . . . . . . . . 12.19 100.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.18 (Number of atoms: 25) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.18 25 31.6 79 CRMSCA CRN = ALL/NP . . . . . 0.2473 CRMSCA SECONDARY STRUCTURE . . 6.71 11 21.2 52 CRMSCA SURFACE . . . . . . . . 6.36 17 32.1 53 CRMSCA BURIED . . . . . . . . 5.80 8 30.8 26 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.38 125 31.8 393 CRMSMC SECONDARY STRUCTURE . . 7.04 55 21.2 260 CRMSMC SURFACE . . . . . . . . 6.48 85 32.3 263 CRMSMC BURIED . . . . . . . . 6.17 40 30.8 130 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.18 117 35.7 328 CRMSSC RELIABLE SIDE CHAINS . 10.30 101 37.7 268 CRMSSC SECONDARY STRUCTURE . . 10.51 55 24.9 221 CRMSSC SURFACE . . . . . . . . 10.69 80 35.4 226 CRMSSC BURIED . . . . . . . . 8.96 37 36.3 102 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.54 217 33.7 644 CRMSALL SECONDARY STRUCTURE . . 9.05 99 23.1 429 CRMSALL SURFACE . . . . . . . . 8.91 148 33.8 438 CRMSALL BURIED . . . . . . . . 7.70 69 33.5 206 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.590 1.000 0.500 25 31.6 79 ERRCA SECONDARY STRUCTURE . . 5.973 1.000 0.500 11 21.2 52 ERRCA SURFACE . . . . . . . . 5.603 1.000 0.500 17 32.1 53 ERRCA BURIED . . . . . . . . 5.563 1.000 0.500 8 30.8 26 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.719 1.000 0.500 125 31.8 393 ERRMC SECONDARY STRUCTURE . . 6.276 1.000 0.500 55 21.2 260 ERRMC SURFACE . . . . . . . . 5.672 1.000 0.500 85 32.3 263 ERRMC BURIED . . . . . . . . 5.818 1.000 0.500 40 30.8 130 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.171 1.000 0.500 117 35.7 328 ERRSC RELIABLE SIDE CHAINS . 9.278 1.000 0.500 101 37.7 268 ERRSC SECONDARY STRUCTURE . . 9.911 1.000 0.500 55 24.9 221 ERRSC SURFACE . . . . . . . . 9.542 1.000 0.500 80 35.4 226 ERRSC BURIED . . . . . . . . 8.370 1.000 0.500 37 36.3 102 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.468 1.000 0.500 217 33.7 644 ERRALL SECONDARY STRUCTURE . . 8.173 1.000 0.500 99 23.1 429 ERRALL SURFACE . . . . . . . . 7.649 1.000 0.500 148 33.8 438 ERRALL BURIED . . . . . . . . 7.079 1.000 0.500 69 33.5 206 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 3 13 23 25 79 DISTCA CA (P) 0.00 0.00 3.80 16.46 29.11 79 DISTCA CA (RMS) 0.00 0.00 2.70 3.73 5.34 DISTCA ALL (N) 0 2 19 75 159 217 644 DISTALL ALL (P) 0.00 0.31 2.95 11.65 24.69 644 DISTALL ALL (RMS) 0.00 1.24 2.60 3.77 5.68 DISTALL END of the results output