####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 32 ( 266), selected 32 , name T0547TS192_1-D3 # Molecule2: number of CA atoms 79 ( 644), selected 32 , name T0547-D3.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0547TS192_1-D3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 344 - 365 4.98 14.92 LONGEST_CONTINUOUS_SEGMENT: 22 345 - 366 4.66 13.88 LCS_AVERAGE: 25.95 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 357 - 364 1.53 24.02 LCS_AVERAGE: 7.48 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 358 - 363 0.82 24.79 LCS_AVERAGE: 5.58 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 32 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT E 343 E 343 3 5 20 3 3 4 6 8 9 9 10 11 13 13 15 18 18 19 20 21 23 24 25 LCS_GDT Y 344 Y 344 4 5 22 3 4 4 4 5 9 9 10 11 13 14 17 19 20 20 22 22 23 23 25 LCS_GDT A 345 A 345 4 5 22 3 4 4 6 8 9 9 11 14 16 17 19 20 21 22 22 22 23 24 25 LCS_GDT E 346 E 346 4 5 22 3 4 4 4 5 5 8 11 14 16 17 19 20 21 22 22 22 23 24 25 LCS_GDT N 347 N 347 4 5 22 3 4 4 6 6 9 10 11 14 16 17 19 20 21 22 22 22 23 24 25 LCS_GDT K 348 K 348 5 5 22 3 4 5 6 6 9 10 11 14 16 17 19 20 21 22 22 22 23 24 25 LCS_GDT L 349 L 349 5 6 22 3 4 5 5 6 9 10 11 14 16 17 19 20 21 22 22 22 23 24 25 LCS_GDT I 350 I 350 5 6 22 3 4 5 5 6 8 10 11 15 16 17 19 20 21 22 22 22 23 23 24 LCS_GDT L 351 L 351 5 6 22 3 4 5 5 6 6 9 11 15 16 17 19 20 21 22 22 22 23 23 24 LCS_GDT K 352 K 352 5 6 22 3 4 5 5 6 6 9 11 15 16 17 19 20 21 22 22 22 23 23 24 LCS_GDT K 353 K 353 3 6 22 3 3 3 5 6 6 9 11 15 16 17 19 20 21 22 22 22 23 23 24 LCS_GDT Q 354 Q 354 3 6 22 0 3 3 5 6 6 8 11 15 16 17 19 20 21 22 22 22 23 24 25 LCS_GDT N 355 N 355 3 5 22 3 3 4 6 6 9 10 11 15 16 17 19 20 21 22 22 22 23 24 25 LCS_GDT P 356 P 356 3 4 22 3 4 4 6 6 9 10 11 15 16 17 19 20 21 22 22 22 23 24 25 LCS_GDT K 357 K 357 3 8 22 3 3 3 6 8 9 10 11 15 16 17 19 20 21 22 22 22 23 24 25 LCS_GDT L 358 L 358 6 8 22 4 5 6 7 8 8 9 11 15 16 17 19 20 21 22 22 22 23 24 25 LCS_GDT I 359 I 359 6 8 22 4 5 6 7 8 8 9 11 15 16 17 19 20 21 22 22 22 23 24 25 LCS_GDT D 360 D 360 6 8 22 4 5 6 7 8 9 9 11 15 16 17 19 20 21 22 22 22 23 24 25 LCS_GDT E 361 E 361 6 8 22 4 5 6 7 8 8 9 11 15 16 17 19 20 21 22 22 22 23 24 25 LCS_GDT L 362 L 362 6 8 22 4 5 6 7 8 8 9 9 11 13 17 19 20 21 22 22 22 23 23 24 LCS_GDT Y 363 Y 363 6 8 22 4 5 6 7 8 8 9 9 10 13 15 15 18 21 22 22 22 23 23 24 LCS_GDT D 364 D 364 4 8 22 3 4 5 7 8 9 10 11 15 15 17 19 20 21 22 22 22 23 24 25 LCS_GDT L 365 L 365 3 3 22 3 4 4 6 6 9 10 11 15 15 17 19 20 21 22 22 22 23 23 24 LCS_GDT Y 366 Y 366 3 3 22 3 3 3 5 6 9 10 11 15 15 17 18 19 21 22 22 22 22 24 25 LCS_GDT K 367 K 367 3 6 21 3 3 5 6 8 8 9 11 11 13 14 16 18 19 19 21 21 22 24 25 LCS_GDT S 368 S 368 5 6 19 4 4 5 6 8 9 9 10 11 13 13 15 18 18 19 21 21 22 24 25 LCS_GDT I 369 I 369 5 6 16 4 4 5 6 8 9 9 10 11 13 13 15 18 18 18 20 21 22 24 25 LCS_GDT K 370 K 370 5 6 16 4 4 5 6 8 9 9 10 11 13 13 15 18 18 18 20 21 22 24 25 LCS_GDT P 371 P 371 5 6 16 4 4 5 6 8 9 9 10 11 13 13 15 18 18 18 20 21 22 24 25 LCS_GDT S 372 S 372 5 6 16 3 4 5 6 8 9 9 10 11 13 13 15 18 18 18 20 21 22 24 25 LCS_GDT N 373 N 373 4 4 16 3 4 4 4 4 5 5 9 10 13 13 15 16 17 18 20 21 22 24 25 LCS_GDT A 374 A 374 4 4 10 0 4 4 4 4 5 6 9 10 11 13 15 16 17 18 19 21 22 24 25 LCS_AVERAGE LCS_A: 13.00 ( 5.58 7.48 25.95 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 6 7 8 9 10 11 15 16 17 19 20 21 22 22 22 23 24 25 GDT PERCENT_AT 5.06 6.33 7.59 8.86 10.13 11.39 12.66 13.92 18.99 20.25 21.52 24.05 25.32 26.58 27.85 27.85 27.85 29.11 30.38 31.65 GDT RMS_LOCAL 0.32 0.53 0.82 1.26 1.53 2.01 2.24 2.49 3.53 3.63 3.80 4.09 4.28 4.49 4.66 4.66 4.66 5.31 6.74 6.86 GDT RMS_ALL_AT 23.70 24.24 24.79 24.41 24.02 11.57 12.08 12.08 14.28 15.51 15.39 13.99 14.36 13.69 13.88 13.88 13.88 15.29 8.94 9.02 # Checking swapping # possible swapping detected: E 343 E 343 # possible swapping detected: Y 344 Y 344 # possible swapping detected: E 346 E 346 # possible swapping detected: D 360 D 360 # possible swapping detected: Y 363 Y 363 # possible swapping detected: D 364 D 364 # possible swapping detected: Y 366 Y 366 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA E 343 E 343 17.804 0 0.463 1.198 21.591 0.000 0.000 LGA Y 344 Y 344 16.269 0 0.570 1.155 28.368 0.000 0.000 LGA A 345 A 345 8.842 0 0.067 0.090 11.627 3.214 4.000 LGA E 346 E 346 5.604 0 0.637 1.093 10.080 32.381 17.778 LGA N 347 N 347 0.971 0 0.658 1.030 7.448 81.786 53.750 LGA K 348 K 348 0.951 0 0.639 0.914 4.795 79.524 64.921 LGA L 349 L 349 3.089 0 0.023 0.160 9.071 50.357 31.964 LGA I 350 I 350 3.422 0 0.260 1.244 6.012 52.262 43.036 LGA L 351 L 351 7.941 0 0.534 1.308 14.219 10.119 5.060 LGA K 352 K 352 6.184 0 0.055 0.559 6.731 17.143 15.450 LGA K 353 K 353 6.406 0 0.548 1.019 7.316 15.357 31.534 LGA Q 354 Q 354 5.072 0 0.582 1.036 6.533 30.476 29.365 LGA N 355 N 355 2.159 0 0.621 0.991 5.706 73.095 53.155 LGA P 356 P 356 1.289 0 0.633 0.767 2.746 77.619 72.177 LGA K 357 K 357 2.730 0 0.592 0.881 7.418 53.690 32.698 LGA L 358 L 358 5.526 0 0.088 0.844 10.645 28.690 15.595 LGA I 359 I 359 5.859 0 0.140 1.633 10.591 26.429 15.536 LGA D 360 D 360 3.925 0 0.028 0.999 5.487 45.000 38.393 LGA E 361 E 361 6.305 0 0.045 1.061 12.895 17.262 8.254 LGA L 362 L 362 9.173 0 0.047 1.294 13.827 3.571 1.786 LGA Y 363 Y 363 7.678 0 0.328 0.443 16.996 13.929 5.040 LGA D 364 D 364 1.769 0 0.405 1.043 5.233 73.690 52.738 LGA L 365 L 365 1.676 0 0.601 1.177 3.527 65.476 62.321 LGA Y 366 Y 366 3.122 0 0.615 1.025 7.190 34.643 29.246 LGA K 367 K 367 9.595 0 0.683 1.495 14.833 3.452 1.534 LGA S 368 S 368 12.480 0 0.646 0.759 15.361 0.000 0.000 LGA I 369 I 369 13.372 0 0.050 1.283 15.519 0.000 0.000 LGA K 370 K 370 19.111 0 0.027 0.966 27.038 0.000 0.000 LGA P 371 P 371 23.983 0 0.618 0.620 25.542 0.000 0.000 LGA S 372 S 372 28.361 0 0.133 0.685 30.373 0.000 0.000 LGA N 373 N 373 27.730 0 0.615 1.264 30.276 0.000 0.000 LGA A 374 A 374 23.519 0 0.547 0.591 25.338 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 32 128 128 100.00 266 266 100.00 79 SUMMARY(RMSD_GDC): 8.726 8.636 9.900 11.255 8.675 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 32 79 4.0 11 2.49 14.241 13.206 0.425 LGA_LOCAL RMSD: 2.486 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 12.079 Number of assigned atoms: 32 Std_ASGN_ATOMS RMSD: 8.726 Standard rmsd on all 32 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.878001 * X + 0.154560 * Y + -0.453018 * Z + 4.893266 Y_new = -0.461870 * X + -0.025099 * Y + 0.886593 * Z + 74.360428 Z_new = 0.125661 * X + 0.987665 * Y + 0.093424 * Z + -19.644369 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.657325 -0.125994 1.476487 [DEG: -152.2535 -7.2189 84.5964 ] ZXZ: -2.669211 1.477236 0.126551 [DEG: -152.9345 84.6394 7.2508 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0547TS192_1-D3 REMARK 2: T0547-D3.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0547TS192_1-D3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 32 79 4.0 11 2.49 13.206 8.73 REMARK ---------------------------------------------------------- MOLECULE T0547TS192_1-D3 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0547 REMARK MODEL 1 REMARK PARENT 2yxx_A 2qgh_A 2p3e_A 1twi_A 1tuf_a ATOM 2712 N GLU 343 -21.171 62.377 5.556 1.00 67.15 N ATOM 2713 CA GLU 343 -20.735 61.326 4.693 1.00 67.15 C ATOM 2714 C GLU 343 -21.940 60.799 3.983 1.00 67.15 C ATOM 2715 O GLU 343 -21.899 60.537 2.782 1.00 67.15 O ATOM 2716 CB GLU 343 -20.092 60.154 5.452 1.00 67.15 C ATOM 2717 CG GLU 343 -18.732 60.492 6.069 1.00 67.15 C ATOM 2718 CD GLU 343 -18.956 61.437 7.240 1.00 67.15 C ATOM 2719 OE1 GLU 343 -19.265 60.937 8.355 1.00 67.15 O ATOM 2720 OE2 GLU 343 -18.824 62.673 7.034 1.00 67.15 O ATOM 2721 N TYR 344 -23.052 60.635 4.722 1.00 60.52 N ATOM 2722 CA TYR 344 -24.249 60.086 4.156 0.88 60.52 C ATOM 2723 C TYR 344 -24.830 61.016 3.132 1.00 60.52 C ATOM 2724 O TYR 344 -25.153 60.593 2.023 0.93 60.52 O ATOM 2725 CB TYR 344 -25.332 59.821 5.219 0.87 60.52 C ATOM 2726 CG TYR 344 -24.784 58.806 6.163 1.00 60.52 C ATOM 2727 CD1 TYR 344 -24.813 57.466 5.850 1.00 60.52 C ATOM 2728 CD2 TYR 344 -24.238 59.196 7.365 1.00 60.52 C ATOM 2729 CE1 TYR 344 -24.305 56.531 6.720 1.00 60.52 C ATOM 2730 CE2 TYR 344 -23.728 58.266 8.239 1.00 60.52 C ATOM 2731 CZ TYR 344 -23.762 56.931 7.918 1.00 60.52 C ATOM 2732 OH TYR 344 -23.240 55.973 8.815 1.00 60.52 H ATOM 2733 N ALA 345 -24.965 62.320 3.444 1.00 49.45 N ATOM 2734 CA ALA 345 -25.608 63.148 2.462 1.00 49.45 C ATOM 2735 C ALA 345 -25.320 64.585 2.745 1.00 49.45 C ATOM 2736 O ALA 345 -24.748 64.932 3.777 1.00 49.45 O ATOM 2737 CB ALA 345 -27.140 63.001 2.452 1.00 49.45 C ATOM 2738 N GLU 346 -25.700 65.459 1.789 1.00101.44 N ATOM 2739 CA GLU 346 -25.515 66.871 1.947 1.00101.44 C ATOM 2740 C GLU 346 -26.846 67.444 2.300 1.00101.44 C ATOM 2741 O GLU 346 -27.855 67.130 1.671 1.00101.44 O ATOM 2742 CB GLU 346 -25.051 67.600 0.678 1.00101.44 C ATOM 2743 CG GLU 346 -24.806 69.093 0.912 1.00101.44 C ATOM 2744 CD GLU 346 -24.553 69.756 -0.432 1.00101.44 C ATOM 2745 OE1 GLU 346 -25.498 69.763 -1.265 1.00101.44 O ATOM 2746 OE2 GLU 346 -23.421 70.265 -0.643 1.00101.44 O ATOM 2747 N ASN 347 -26.883 68.312 3.329 1.00 59.00 N ATOM 2748 CA ASN 347 -28.145 68.852 3.728 1.00 59.00 C ATOM 2749 C ASN 347 -28.134 70.332 3.515 1.00 59.00 C ATOM 2750 O ASN 347 -27.146 71.011 3.791 1.00 59.00 O ATOM 2751 CB ASN 347 -28.458 68.621 5.215 1.00 59.00 C ATOM 2752 CG ASN 347 -28.554 67.121 5.446 1.00 59.00 C ATOM 2753 OD1 ASN 347 -28.593 66.336 4.500 1.00 59.00 O ATOM 2754 ND2 ASN 347 -28.587 66.710 6.742 1.00 59.00 N ATOM 2755 N LYS 348 -29.254 70.862 2.988 1.00101.91 N ATOM 2756 CA LYS 348 -29.393 72.278 2.809 1.00101.91 C ATOM 2757 C LYS 348 -30.419 72.696 3.813 1.00101.91 C ATOM 2758 O LYS 348 -31.570 72.266 3.751 1.00101.91 O ATOM 2759 CB LYS 348 -29.951 72.666 1.428 1.00101.91 C ATOM 2760 CG LYS 348 -29.087 72.210 0.253 1.00101.91 C ATOM 2761 CD LYS 348 -29.819 72.276 -1.090 1.00101.91 C ATOM 2762 CE LYS 348 -29.075 71.592 -2.238 1.00101.91 C ATOM 2763 NZ LYS 348 -27.926 72.417 -2.666 1.00101.91 N ATOM 2764 N LEU 349 -30.040 73.559 4.772 1.00 62.78 N ATOM 2765 CA LEU 349 -30.996 73.919 5.775 1.00 62.78 C ATOM 2766 C LEU 349 -31.581 75.251 5.452 1.00 62.78 C ATOM 2767 O LEU 349 -30.886 76.183 5.045 1.00 62.78 O ATOM 2768 CB LEU 349 -30.413 73.981 7.195 1.00 62.78 C ATOM 2769 CG LEU 349 -29.939 72.610 7.712 1.00 62.78 C ATOM 2770 CD1 LEU 349 -29.521 72.682 9.188 1.00 62.78 C ATOM 2771 CD2 LEU 349 -30.984 71.517 7.438 1.00 62.78 C ATOM 2772 N ILE 350 -32.914 75.363 5.628 1.00179.81 N ATOM 2773 CA ILE 350 -33.576 76.598 5.339 1.00179.81 C ATOM 2774 C ILE 350 -34.444 76.955 6.504 1.00179.81 C ATOM 2775 O ILE 350 -34.695 76.151 7.398 1.00179.81 O ATOM 2776 CB ILE 350 -34.429 76.600 4.097 1.00179.81 C ATOM 2777 CG1 ILE 350 -35.591 75.606 4.218 1.00179.81 C ATOM 2778 CG2 ILE 350 -33.511 76.326 2.895 1.00179.81 C ATOM 2779 CD1 ILE 350 -35.118 74.167 4.350 1.00179.81 C ATOM 2780 N LEU 351 -34.907 78.215 6.505 1.00 90.54 N ATOM 2781 CA LEU 351 -35.688 78.836 7.538 1.00 90.54 C ATOM 2782 C LEU 351 -37.041 78.218 7.678 1.00 90.54 C ATOM 2783 O LEU 351 -37.645 78.318 8.745 1.00 90.54 O ATOM 2784 CB LEU 351 -35.886 80.345 7.312 1.00 90.54 C ATOM 2785 CG LEU 351 -34.601 81.162 7.519 1.00 90.54 C ATOM 2786 CD1 LEU 351 -34.842 82.662 7.290 1.00 90.54 C ATOM 2787 CD2 LEU 351 -33.994 80.867 8.898 1.00 90.54 C ATOM 2788 N LYS 352 -37.598 77.616 6.611 1.00132.06 N ATOM 2789 CA LYS 352 -38.943 77.147 6.757 1.00132.06 C ATOM 2790 C LYS 352 -38.948 75.709 7.164 1.00132.06 C ATOM 2791 O LYS 352 -38.014 74.967 6.866 1.00132.06 O ATOM 2792 CB LYS 352 -39.794 77.389 5.511 1.00132.06 C ATOM 2793 CG LYS 352 -41.259 77.589 5.881 1.00132.06 C ATOM 2794 CD LYS 352 -41.979 78.507 4.898 1.00132.06 C ATOM 2795 CE LYS 352 -43.295 79.082 5.409 1.00132.06 C ATOM 2796 NZ LYS 352 -43.712 80.230 4.574 1.00132.06 N ATOM 2797 N LYS 353 -40.016 75.285 7.881 1.00121.37 N ATOM 2798 CA LYS 353 -40.027 73.984 8.474 1.00121.37 C ATOM 2799 C LYS 353 -41.305 73.262 8.202 1.00121.37 C ATOM 2800 O LYS 353 -42.165 73.700 7.440 1.00121.37 O ATOM 2801 CB LYS 353 -39.929 74.055 10.013 1.00121.37 C ATOM 2802 CG LYS 353 -38.736 74.867 10.530 1.00121.37 C ATOM 2803 CD LYS 353 -38.757 75.140 12.038 1.00121.37 C ATOM 2804 CE LYS 353 -39.499 76.418 12.430 1.00121.37 C ATOM 2805 NZ LYS 353 -39.358 76.651 13.885 1.00121.37 N ATOM 2806 N GLN 354 -41.429 72.088 8.851 1.00141.11 N ATOM 2807 CA GLN 354 -42.583 71.251 8.767 1.00141.11 C ATOM 2808 C GLN 354 -43.721 72.021 9.349 1.00141.11 C ATOM 2809 O GLN 354 -44.863 71.877 8.917 1.00141.11 O ATOM 2810 CB GLN 354 -42.400 69.917 9.520 1.00141.11 C ATOM 2811 CG GLN 354 -42.174 70.044 11.028 1.00141.11 C ATOM 2812 CD GLN 354 -43.489 69.776 11.745 1.00141.11 C ATOM 2813 OE1 GLN 354 -44.571 70.033 11.218 1.00141.11 O ATOM 2814 NE2 GLN 354 -43.397 69.229 12.986 1.00141.11 N ATOM 2815 N ASN 355 -43.453 72.862 10.367 1.00103.13 N ATOM 2816 CA ASN 355 -44.541 73.623 10.894 1.00103.13 C ATOM 2817 C ASN 355 -45.082 74.547 9.832 1.00103.13 C ATOM 2818 O ASN 355 -46.291 74.778 9.827 1.00103.13 O ATOM 2819 CB ASN 355 -44.257 74.305 12.257 1.00103.13 C ATOM 2820 CG ASN 355 -42.999 75.149 12.238 1.00103.13 C ATOM 2821 OD1 ASN 355 -41.934 74.708 11.807 1.00103.13 O ATOM 2822 ND2 ASN 355 -43.133 76.425 12.685 1.00103.13 N ATOM 2823 N PRO 356 -44.299 75.135 8.951 1.00167.14 N ATOM 2824 CA PRO 356 -44.900 75.901 7.886 1.00167.14 C ATOM 2825 C PRO 356 -45.553 75.067 6.821 1.00167.14 C ATOM 2826 O PRO 356 -46.547 75.518 6.252 1.00167.14 O ATOM 2827 CB PRO 356 -43.800 76.798 7.324 1.00167.14 C ATOM 2828 CG PRO 356 -42.821 76.959 8.494 1.00167.14 C ATOM 2829 CD PRO 356 -42.987 75.660 9.293 1.00167.14 C ATOM 2830 N LYS 357 -45.009 73.869 6.512 1.00198.32 N ATOM 2831 CA LYS 357 -45.554 73.069 5.446 1.00198.32 C ATOM 2832 C LYS 357 -45.351 71.631 5.858 1.00198.32 C ATOM 2833 O LYS 357 -44.242 71.106 5.784 1.00198.32 O ATOM 2834 CB LYS 357 -44.788 73.317 4.126 1.00198.32 C ATOM 2835 CG LYS 357 -45.575 73.100 2.830 1.00198.32 C ATOM 2836 CD LYS 357 -46.050 71.673 2.573 1.00198.32 C ATOM 2837 CE LYS 357 -46.755 71.524 1.222 1.00198.32 C ATOM 2838 NZ LYS 357 -48.014 72.302 1.221 1.00198.32 N ATOM 2839 N LEU 358 -46.437 70.980 6.334 1.00152.82 N ATOM 2840 CA LEU 358 -46.500 69.634 6.855 1.00152.82 C ATOM 2841 C LEU 358 -46.428 68.533 5.834 1.00152.82 C ATOM 2842 O LEU 358 -45.991 67.429 6.156 1.00152.82 O ATOM 2843 CB LEU 358 -47.779 69.329 7.655 1.00152.82 C ATOM 2844 CG LEU 358 -47.891 70.046 9.010 1.00152.82 C ATOM 2845 CD1 LEU 358 -48.037 71.564 8.835 1.00152.82 C ATOM 2846 CD2 LEU 358 -49.008 69.431 9.867 1.00152.82 C ATOM 2847 N ILE 359 -46.849 68.783 4.582 1.00121.80 N ATOM 2848 CA ILE 359 -47.128 67.715 3.655 1.00121.80 C ATOM 2849 C ILE 359 -45.995 66.745 3.492 1.00121.80 C ATOM 2850 O ILE 359 -46.220 65.537 3.537 1.00121.80 O ATOM 2851 CB ILE 359 -47.467 68.237 2.289 1.00121.80 C ATOM 2852 CG1 ILE 359 -48.676 69.186 2.358 1.00121.80 C ATOM 2853 CG2 ILE 359 -47.703 67.025 1.374 1.00121.80 C ATOM 2854 CD1 ILE 359 -49.949 68.517 2.876 1.00121.80 C ATOM 2855 N ASP 360 -44.750 67.213 3.315 1.00108.09 N ATOM 2856 CA ASP 360 -43.675 66.286 3.092 1.00108.09 C ATOM 2857 C ASP 360 -43.539 65.331 4.245 1.00108.09 C ATOM 2858 O ASP 360 -43.464 64.120 4.042 1.00108.09 O ATOM 2859 CB ASP 360 -42.334 67.019 2.917 1.00108.09 C ATOM 2860 CG ASP 360 -42.161 67.917 4.134 1.00108.09 C ATOM 2861 OD1 ASP 360 -42.700 69.054 4.095 1.00108.09 O ATOM 2862 OD2 ASP 360 -41.501 67.485 5.116 1.00108.09 O ATOM 2863 N GLU 361 -43.507 65.839 5.490 1.00106.45 N ATOM 2864 CA GLU 361 -43.315 64.976 6.620 1.00106.45 C ATOM 2865 C GLU 361 -44.507 64.091 6.814 1.00106.45 C ATOM 2866 O GLU 361 -44.378 62.889 7.042 1.00106.45 O ATOM 2867 CB GLU 361 -43.146 65.752 7.937 1.00106.45 C ATOM 2868 CG GLU 361 -42.938 64.847 9.152 1.00106.45 C ATOM 2869 CD GLU 361 -42.935 65.715 10.401 1.00106.45 C ATOM 2870 OE1 GLU 361 -42.721 66.949 10.266 1.00106.45 O ATOM 2871 OE2 GLU 361 -43.147 65.153 11.508 1.00106.45 O ATOM 2872 N LEU 362 -45.705 64.694 6.737 1.00139.46 N ATOM 2873 CA LEU 362 -46.947 64.041 7.031 1.00139.46 C ATOM 2874 C LEU 362 -47.285 62.988 6.012 1.00139.46 C ATOM 2875 O LEU 362 -47.618 61.863 6.384 1.00139.46 O ATOM 2876 CB LEU 362 -48.074 65.101 7.106 1.00139.46 C ATOM 2877 CG LEU 362 -49.432 64.665 7.697 1.00139.46 C ATOM 2878 CD1 LEU 362 -50.421 65.843 7.694 1.00139.46 C ATOM 2879 CD2 LEU 362 -50.020 63.432 6.996 1.00139.46 C ATOM 2880 N TYR 363 -47.201 63.303 4.700 1.00170.99 N ATOM 2881 CA TYR 363 -47.636 62.315 3.748 1.00170.99 C ATOM 2882 C TYR 363 -46.501 61.914 2.858 1.00170.99 C ATOM 2883 O TYR 363 -46.707 61.192 1.884 1.00170.99 O ATOM 2884 CB TYR 363 -48.713 62.855 2.789 1.00170.99 C ATOM 2885 CG TYR 363 -49.892 63.314 3.579 1.00170.99 C ATOM 2886 CD1 TYR 363 -50.809 62.414 4.069 1.00170.99 C ATOM 2887 CD2 TYR 363 -50.084 64.656 3.815 1.00170.99 C ATOM 2888 CE1 TYR 363 -51.896 62.850 4.789 1.00170.99 C ATOM 2889 CE2 TYR 363 -51.168 65.096 4.535 1.00170.99 C ATOM 2890 CZ TYR 363 -52.078 64.191 5.025 1.00170.99 C ATOM 2891 OH TYR 363 -53.194 64.638 5.764 1.00170.99 H ATOM 2892 N ASP 364 -45.265 62.334 3.180 1.00 67.99 N ATOM 2893 CA ASP 364 -44.144 61.991 2.354 1.00 67.99 C ATOM 2894 C ASP 364 -44.441 62.422 0.947 1.00 67.99 C ATOM 2895 O ASP 364 -44.040 61.759 -0.009 1.00 67.99 O ATOM 2896 CB ASP 364 -43.858 60.478 2.337 1.00 67.99 C ATOM 2897 CG ASP 364 -43.393 60.058 3.725 0.88 67.99 C ATOM 2898 OD1 ASP 364 -43.100 60.961 4.554 1.00 67.99 O ATOM 2899 OD2 ASP 364 -43.323 58.824 3.973 1.00 67.99 O ATOM 2900 N LEU 365 -45.138 63.561 0.779 1.00149.10 N ATOM 2901 CA LEU 365 -45.489 64.033 -0.532 1.00149.10 C ATOM 2902 C LEU 365 -44.294 64.709 -1.130 1.00149.10 C ATOM 2903 O LEU 365 -43.451 65.249 -0.416 1.00149.10 O ATOM 2904 CB LEU 365 -46.694 64.997 -0.512 1.00149.10 C ATOM 2905 CG LEU 365 -47.192 65.510 -1.881 1.00149.10 C ATOM 2906 CD1 LEU 365 -46.270 66.580 -2.484 1.00149.10 C ATOM 2907 CD2 LEU 365 -47.457 64.336 -2.839 1.00149.10 C ATOM 2908 N TYR 366 -44.186 64.688 -2.476 1.00 92.73 N ATOM 2909 CA TYR 366 -43.046 65.284 -3.110 1.00 92.73 C ATOM 2910 C TYR 366 -43.468 66.538 -3.804 1.00 92.73 C ATOM 2911 O TYR 366 -44.448 66.560 -4.546 1.00 92.73 O ATOM 2912 CB TYR 366 -42.388 64.361 -4.156 1.00 92.73 C ATOM 2913 CG TYR 366 -41.215 65.061 -4.759 1.00 92.73 C ATOM 2914 CD1 TYR 366 -39.965 64.938 -4.202 1.00 92.73 C ATOM 2915 CD2 TYR 366 -41.365 65.840 -5.885 1.00 92.73 C ATOM 2916 CE1 TYR 366 -38.880 65.580 -4.752 1.00 92.73 C ATOM 2917 CE2 TYR 366 -40.284 66.486 -6.441 1.00 92.73 C ATOM 2918 CZ TYR 366 -39.040 66.357 -5.874 1.00 92.73 C ATOM 2919 OH TYR 366 -37.928 67.018 -6.438 1.00 92.73 H ATOM 2920 N LYS 367 -42.747 67.646 -3.531 1.00102.49 N ATOM 2921 CA LYS 367 -43.016 68.865 -4.233 1.00102.49 C ATOM 2922 C LYS 367 -41.721 69.375 -4.773 1.00102.49 C ATOM 2923 O LYS 367 -40.666 69.209 -4.163 1.00102.49 O ATOM 2924 CB LYS 367 -43.802 69.914 -3.430 1.00102.49 C ATOM 2925 CG LYS 367 -45.282 69.506 -3.394 1.00102.49 C ATOM 2926 CD LYS 367 -46.180 70.256 -2.409 1.00102.49 C ATOM 2927 CE LYS 367 -47.636 69.787 -2.451 1.00102.49 C ATOM 2928 NZ LYS 367 -48.449 70.545 -1.474 1.00102.49 N ATOM 2929 N SER 368 -41.767 69.972 -5.979 1.00118.70 N ATOM 2930 CA SER 368 -40.557 70.377 -6.633 1.00118.70 C ATOM 2931 C SER 368 -39.960 71.556 -5.945 1.00118.70 C ATOM 2932 O SER 368 -40.672 72.433 -5.462 1.00118.70 O ATOM 2933 CB SER 368 -40.756 70.746 -8.112 1.00118.70 C ATOM 2934 OG SER 368 -39.520 71.132 -8.693 1.00118.70 O ATOM 2935 N ILE 369 -38.611 71.593 -5.883 1.00148.57 N ATOM 2936 CA ILE 369 -37.934 72.705 -5.277 1.00148.57 C ATOM 2937 C ILE 369 -36.913 73.199 -6.259 1.00148.57 C ATOM 2938 O ILE 369 -36.235 72.409 -6.918 1.00148.57 O ATOM 2939 CB ILE 369 -37.156 72.376 -4.029 1.00148.57 C ATOM 2940 CG1 ILE 369 -38.050 71.772 -2.937 1.00148.57 C ATOM 2941 CG2 ILE 369 -36.445 73.658 -3.574 1.00148.57 C ATOM 2942 CD1 ILE 369 -38.358 70.300 -3.169 1.00148.57 C ATOM 2943 N LYS 370 -36.783 74.536 -6.394 1.00212.21 N ATOM 2944 CA LYS 370 -35.802 75.075 -7.294 1.00212.21 C ATOM 2945 C LYS 370 -35.214 76.301 -6.669 1.00212.21 C ATOM 2946 O LYS 370 -35.809 76.912 -5.782 1.00212.21 O ATOM 2947 CB LYS 370 -36.383 75.524 -8.644 1.00212.21 C ATOM 2948 CG LYS 370 -37.137 76.852 -8.562 1.00212.21 C ATOM 2949 CD LYS 370 -38.230 76.876 -7.492 1.00212.21 C ATOM 2950 CE LYS 370 -39.050 78.167 -7.478 1.00212.21 C ATOM 2951 NZ LYS 370 -38.192 79.308 -7.086 1.00212.21 N ATOM 2952 N PRO 371 -34.027 76.657 -7.090 1.00196.40 N ATOM 2953 CA PRO 371 -33.446 77.872 -6.586 1.00196.40 C ATOM 2954 C PRO 371 -34.088 79.040 -7.263 1.00196.40 C ATOM 2955 O PRO 371 -34.450 78.923 -8.434 1.00196.40 O ATOM 2956 CB PRO 371 -31.949 77.778 -6.853 1.00196.40 C ATOM 2957 CG PRO 371 -31.686 76.266 -6.883 1.00196.40 C ATOM 2958 CD PRO 371 -33.012 75.653 -7.367 1.00196.40 C ATOM 2959 N SER 372 -34.219 80.176 -6.553 1.00 65.10 N ATOM 2960 CA SER 372 -34.831 81.346 -7.108 1.00 65.10 C ATOM 2961 C SER 372 -33.955 81.854 -8.198 1.00 65.10 C ATOM 2962 O SER 372 -34.446 82.397 -9.186 1.00 65.10 O ATOM 2963 CB SER 372 -34.993 82.492 -6.091 1.00 65.10 C ATOM 2964 OG SER 372 -35.875 82.103 -5.049 1.00 65.10 O ATOM 2965 N ASN 373 -32.626 81.707 -8.043 1.00 89.72 N ATOM 2966 CA ASN 373 -31.764 82.199 -9.074 1.00 89.72 C ATOM 2967 C ASN 373 -30.959 81.050 -9.589 1.00 89.72 C ATOM 2968 O ASN 373 -30.382 80.288 -8.816 1.00 89.72 O ATOM 2969 CB ASN 373 -30.792 83.287 -8.587 1.00 89.72 C ATOM 2970 CG ASN 373 -30.164 83.941 -9.809 0.87 89.72 C ATOM 2971 OD1 ASN 373 -29.693 83.266 -10.723 1.00 89.72 O ATOM 2972 ND2 ASN 373 -30.167 85.301 -9.836 1.00 89.72 N ATOM 2973 N ALA 374 -30.918 80.883 -10.927 1.00 52.64 N ATOM 2974 CA ALA 374 -30.153 79.807 -11.484 1.00 52.64 C ATOM 2975 C ALA 374 -28.717 80.185 -11.367 1.00 52.64 C ATOM 2976 O ALA 374 -28.341 81.324 -11.644 1.00 52.64 O ATOM 2977 CB ALA 374 -30.444 79.545 -12.973 1.00 52.64 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 266 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 86.10 41.9 62 39.7 156 ARMSMC SECONDARY STRUCTURE . . 80.05 44.0 25 24.0 104 ARMSMC SURFACE . . . . . . . . 91.23 34.1 41 39.4 104 ARMSMC BURIED . . . . . . . . 75.09 57.1 21 40.4 52 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 91.12 36.7 30 41.1 73 ARMSSC1 RELIABLE SIDE CHAINS . 91.12 36.7 30 41.7 72 ARMSSC1 SECONDARY STRUCTURE . . 96.18 25.0 12 24.5 49 ARMSSC1 SURFACE . . . . . . . . 98.48 30.0 20 40.0 50 ARMSSC1 BURIED . . . . . . . . 74.23 50.0 10 43.5 23 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 90.17 35.7 28 43.8 64 ARMSSC2 RELIABLE SIDE CHAINS . 80.29 40.0 20 50.0 40 ARMSSC2 SECONDARY STRUCTURE . . 96.51 27.3 11 26.2 42 ARMSSC2 SURFACE . . . . . . . . 82.36 38.9 18 40.9 44 ARMSSC2 BURIED . . . . . . . . 102.74 30.0 10 50.0 20 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 73.68 30.0 10 58.8 17 ARMSSC3 RELIABLE SIDE CHAINS . 76.34 33.3 9 60.0 15 ARMSSC3 SECONDARY STRUCTURE . . 90.75 33.3 3 30.0 10 ARMSSC3 SURFACE . . . . . . . . 70.79 33.3 9 56.2 16 ARMSSC3 BURIED . . . . . . . . 95.80 0.0 1 100.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 94.30 33.3 6 66.7 9 ARMSSC4 RELIABLE SIDE CHAINS . 94.30 33.3 6 66.7 9 ARMSSC4 SECONDARY STRUCTURE . . 84.00 50.0 2 40.0 5 ARMSSC4 SURFACE . . . . . . . . 102.83 20.0 5 62.5 8 ARMSSC4 BURIED . . . . . . . . 21.88 100.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.73 (Number of atoms: 32) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.73 32 40.5 79 CRMSCA CRN = ALL/NP . . . . . 0.2727 CRMSCA SECONDARY STRUCTURE . . 8.52 13 25.0 52 CRMSCA SURFACE . . . . . . . . 8.58 21 39.6 53 CRMSCA BURIED . . . . . . . . 9.00 11 42.3 26 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.84 160 40.7 393 CRMSMC SECONDARY STRUCTURE . . 8.72 65 25.0 260 CRMSMC SURFACE . . . . . . . . 8.68 105 39.9 263 CRMSMC BURIED . . . . . . . . 9.15 55 42.3 130 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.00 138 42.1 328 CRMSSC RELIABLE SIDE CHAINS . 10.83 120 44.8 268 CRMSSC SECONDARY STRUCTURE . . 10.59 58 26.2 221 CRMSSC SURFACE . . . . . . . . 11.10 92 40.7 226 CRMSSC BURIED . . . . . . . . 10.82 46 45.1 102 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.94 266 41.3 644 CRMSALL SECONDARY STRUCTURE . . 9.71 110 25.6 429 CRMSALL SURFACE . . . . . . . . 9.92 176 40.2 438 CRMSALL BURIED . . . . . . . . 9.97 90 43.7 206 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 108.611 0.854 0.866 32 40.5 79 ERRCA SECONDARY STRUCTURE . . 113.937 0.870 0.880 13 25.0 52 ERRCA SURFACE . . . . . . . . 110.625 0.854 0.867 21 39.6 53 ERRCA BURIED . . . . . . . . 104.765 0.853 0.865 11 42.3 26 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 108.455 0.850 0.863 160 40.7 393 ERRMC SECONDARY STRUCTURE . . 113.634 0.864 0.875 65 25.0 260 ERRMC SURFACE . . . . . . . . 110.476 0.851 0.865 105 39.9 263 ERRMC BURIED . . . . . . . . 104.597 0.849 0.861 55 42.3 130 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 109.183 0.824 0.842 138 42.1 328 ERRSC RELIABLE SIDE CHAINS . 110.722 0.825 0.843 120 44.8 268 ERRSC SECONDARY STRUCTURE . . 117.595 0.849 0.861 58 26.2 221 ERRSC SURFACE . . . . . . . . 110.994 0.819 0.839 92 40.7 226 ERRSC BURIED . . . . . . . . 105.562 0.835 0.849 46 45.1 102 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 108.917 0.838 0.853 266 41.3 644 ERRALL SECONDARY STRUCTURE . . 115.776 0.857 0.868 110 25.6 429 ERRALL SURFACE . . . . . . . . 110.837 0.836 0.852 176 40.2 438 ERRALL BURIED . . . . . . . . 105.163 0.842 0.855 90 43.7 206 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 1 1 3 7 22 32 79 DISTCA CA (P) 1.27 1.27 3.80 8.86 27.85 79 DISTCA CA (RMS) 0.54 0.54 2.21 3.41 6.67 DISTCA ALL (N) 1 4 10 51 157 266 644 DISTALL ALL (P) 0.16 0.62 1.55 7.92 24.38 644 DISTALL ALL (RMS) 0.54 1.56 2.21 3.81 6.78 DISTALL END of the results output