####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 23 ( 192), selected 23 , name T0547TS189_1-D3 # Molecule2: number of CA atoms 79 ( 644), selected 23 , name T0547-D3.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0547TS189_1-D3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 390 - 402 4.95 16.63 LCS_AVERAGE: 13.48 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 397 - 402 1.84 20.45 LCS_AVERAGE: 5.94 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 397 - 401 1.00 22.09 LCS_AVERAGE: 4.62 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 23 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT E 343 E 343 3 5 6 3 3 4 4 7 7 7 8 8 11 12 13 14 14 15 15 15 15 16 17 LCS_GDT Y 344 Y 344 4 5 6 3 4 5 5 7 7 7 8 9 11 12 13 14 14 15 15 15 15 16 17 LCS_GDT A 345 A 345 4 5 6 3 4 5 5 7 7 7 8 9 11 12 13 14 14 15 15 15 15 16 17 LCS_GDT E 346 E 346 4 5 6 3 4 5 5 5 5 6 7 7 10 12 13 14 14 15 15 15 15 16 17 LCS_GDT N 347 N 347 4 5 6 3 4 5 5 5 5 6 7 9 10 12 13 14 14 15 15 15 15 16 17 LCS_GDT K 348 K 348 4 5 6 0 3 5 5 5 5 6 7 9 10 12 13 14 14 15 15 15 15 16 17 LCS_GDT E 386 E 386 3 3 10 0 3 3 3 3 3 4 4 5 6 6 7 8 8 11 11 11 16 16 17 LCS_GDT S 387 S 387 3 3 10 0 3 3 3 3 3 4 5 5 7 8 9 10 10 11 13 14 16 16 17 LCS_GDT I 388 I 388 3 3 10 1 3 3 3 3 4 4 6 7 8 9 11 13 13 15 15 15 16 16 17 LCS_GDT L 389 L 389 3 3 10 1 3 3 3 3 4 6 7 8 11 12 13 14 14 15 15 15 16 16 17 LCS_GDT T 390 T 390 3 3 13 1 3 3 3 4 4 6 7 8 11 11 13 14 14 15 15 15 16 16 17 LCS_GDT L 391 L 391 3 3 13 0 3 3 3 4 5 6 7 9 11 12 13 14 14 15 15 15 16 16 17 LCS_GDT F 392 F 392 3 4 13 3 3 4 4 4 5 7 8 9 11 12 13 14 14 15 15 15 16 16 17 LCS_GDT D 393 D 393 3 5 13 3 3 4 5 7 7 7 8 9 11 12 13 14 14 15 15 15 16 16 17 LCS_GDT L 394 L 394 3 5 13 3 3 4 5 7 7 7 8 9 11 12 13 14 14 15 15 15 16 16 17 LCS_GDT G 395 G 395 3 5 13 3 3 4 5 7 7 7 8 9 11 12 13 14 14 15 15 15 16 16 17 LCS_GDT Y 396 Y 396 3 5 13 3 3 4 4 7 7 7 8 8 11 11 12 14 14 15 15 15 15 16 17 LCS_GDT V 397 V 397 5 6 13 3 4 5 5 5 6 7 7 8 9 11 12 12 13 13 14 14 16 16 17 LCS_GDT D 398 D 398 5 6 13 3 4 5 5 5 6 7 7 8 9 11 12 12 13 13 14 14 16 16 17 LCS_GDT L 399 L 399 5 6 13 3 4 5 5 5 6 7 7 8 9 11 12 12 13 13 14 14 16 16 17 LCS_GDT Q 400 Q 400 5 6 13 3 4 5 5 5 6 6 7 8 9 11 12 12 13 13 14 14 16 16 17 LCS_GDT D 401 D 401 5 6 13 3 3 5 5 5 6 6 7 8 9 11 12 12 13 13 14 14 16 16 17 LCS_GDT R 402 R 402 3 6 13 3 3 4 4 5 6 6 6 7 7 11 12 12 13 13 14 14 16 16 17 LCS_AVERAGE LCS_A: 8.02 ( 4.62 5.94 13.48 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 4 5 5 7 7 7 8 9 11 12 13 14 14 15 15 15 16 16 17 GDT PERCENT_AT 3.80 5.06 6.33 6.33 8.86 8.86 8.86 10.13 11.39 13.92 15.19 16.46 17.72 17.72 18.99 18.99 18.99 20.25 20.25 21.52 GDT RMS_LOCAL 0.05 0.54 1.00 1.00 1.83 1.83 1.83 2.29 3.59 3.63 4.26 4.43 4.73 4.73 4.97 4.97 4.97 6.13 5.57 6.09 GDT RMS_ALL_AT 16.17 24.15 22.09 22.09 9.65 9.65 9.65 9.54 10.09 9.26 9.67 9.56 9.42 9.42 9.49 9.49 9.49 14.33 9.38 9.18 # Checking swapping # possible swapping detected: E 346 E 346 # possible swapping detected: E 386 E 386 # possible swapping detected: F 392 F 392 # possible swapping detected: D 401 D 401 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA E 343 E 343 1.804 0 0.636 0.965 3.443 71.429 73.228 LGA Y 344 Y 344 1.508 0 0.128 1.138 12.198 83.810 38.333 LGA A 345 A 345 2.156 0 0.143 0.155 6.178 48.690 51.905 LGA E 346 E 346 9.179 0 0.084 0.864 14.060 4.643 2.063 LGA N 347 N 347 11.853 0 0.170 1.403 14.096 0.119 0.060 LGA K 348 K 348 10.328 0 0.583 0.931 14.005 0.000 0.159 LGA E 386 E 386 16.475 0 0.653 1.293 17.918 0.000 0.000 LGA S 387 S 387 15.153 0 0.526 1.004 16.526 0.000 0.000 LGA I 388 I 388 11.419 0 0.640 1.110 15.244 0.238 0.119 LGA L 389 L 389 7.110 0 0.607 0.662 8.528 6.905 8.690 LGA T 390 T 390 7.497 0 0.667 0.931 8.855 9.286 9.184 LGA L 391 L 391 6.983 0 0.576 1.316 12.911 11.905 6.310 LGA F 392 F 392 3.964 0 0.660 1.396 11.388 52.143 24.675 LGA D 393 D 393 1.869 0 0.331 0.469 5.594 77.738 54.405 LGA L 394 L 394 1.137 0 0.655 0.499 4.094 70.476 65.119 LGA G 395 G 395 2.201 0 0.532 0.532 2.201 79.524 79.524 LGA Y 396 Y 396 2.547 0 0.271 0.545 12.421 50.595 22.857 LGA V 397 V 397 7.606 0 0.706 0.595 9.930 9.167 5.578 LGA D 398 D 398 10.782 0 0.691 1.305 14.101 0.714 0.357 LGA L 399 L 399 15.064 0 0.326 1.174 20.680 0.000 0.000 LGA Q 400 Q 400 13.729 0 0.304 1.081 15.750 0.000 0.000 LGA D 401 D 401 11.450 0 0.033 1.119 12.720 0.000 0.000 LGA R 402 R 402 14.607 0 0.073 1.154 24.213 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 23 92 92 100.00 192 192 100.00 79 SUMMARY(RMSD_GDC): 8.796 8.922 10.222 7.309 5.602 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 23 79 4.0 8 2.29 10.127 9.581 0.335 LGA_LOCAL RMSD: 2.291 Number of atoms: 8 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.542 Number of assigned atoms: 23 Std_ASGN_ATOMS RMSD: 8.796 Standard rmsd on all 23 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.375392 * X + 0.816287 * Y + -0.439040 * Z + -6.755581 Y_new = 0.270912 * X + 0.549629 * Y + 0.790263 * Z + 17.658932 Z_new = 0.886390 * X + 0.177717 * Y + -0.427468 * Z + -65.108498 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.516466 -1.089489 2.747588 [DEG: 144.1829 -62.4231 157.4252 ] ZXZ: -2.634489 2.012486 1.372925 [DEG: -150.9451 115.3070 78.6628 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0547TS189_1-D3 REMARK 2: T0547-D3.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0547TS189_1-D3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 23 79 4.0 8 2.29 9.581 8.80 REMARK ---------------------------------------------------------- MOLECULE T0547TS189_1-D3 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0547 REMARK MODEL 1 REMARK PARENT 1KNW 1TWI 2PLJ 2P3E 2QGH ATOM 5262 N GLU 343 -29.556 76.971 -4.322 1.00 99.99 N ATOM 5264 CA GLU 343 -28.538 75.010 -4.497 1.00 99.99 C ATOM 5266 CB GLU 343 -27.076 74.975 -4.939 1.00 99.99 C ATOM 5269 CG GLU 343 -26.705 75.530 -3.718 1.00 99.99 C ATOM 5272 CD GLU 343 -26.479 77.005 -3.629 1.00 99.99 C ATOM 5273 OE1 GLU 343 -27.257 77.826 -4.125 1.00 99.99 O ATOM 5274 OE2 GLU 343 -25.456 77.326 -3.002 1.00 99.99 O ATOM 5275 C GLU 343 -29.025 74.146 -3.551 1.00 99.99 C ATOM 5276 O GLU 343 -29.467 74.864 -2.669 1.00 99.99 O ATOM 5277 N TYR 344 -29.437 73.036 -4.063 1.00 99.99 N ATOM 5279 CA TYR 344 -29.908 72.105 -3.152 1.00 99.99 C ATOM 5281 CB TYR 344 -31.375 71.953 -2.841 1.00 99.99 C ATOM 5284 CG TYR 344 -31.721 70.992 -1.730 1.00 99.99 C ATOM 5285 CD1 TYR 344 -31.102 71.077 -0.491 1.00 99.99 C ATOM 5287 CD2 TYR 344 -32.664 69.992 -1.914 1.00 99.99 C ATOM 5289 CE1 TYR 344 -31.415 70.191 0.530 1.00 99.99 C ATOM 5291 CE2 TYR 344 -32.970 69.097 -0.897 1.00 99.99 C ATOM 5293 CZ TYR 344 -32.354 69.187 0.339 1.00 99.99 C ATOM 5294 OH TYR 344 -32.683 68.309 1.320 1.00 99.99 H ATOM 5296 C TYR 344 -29.184 70.908 -3.516 1.00 99.99 C ATOM 5297 O TYR 344 -29.341 70.251 -4.345 1.00 99.99 O ATOM 5298 N ALA 345 -28.315 70.212 -2.954 1.00 99.99 N ATOM 5300 CA ALA 345 -27.710 68.942 -3.488 1.00 99.99 C ATOM 5302 CB ALA 345 -28.326 67.605 -3.195 1.00 99.99 C ATOM 5306 C ALA 345 -27.027 69.035 -4.854 1.00 99.99 C ATOM 5307 O ALA 345 -27.548 69.629 -5.798 1.00 99.99 O ATOM 5308 N GLU 346 -25.879 68.387 -4.986 1.00 99.99 N ATOM 5310 CA GLU 346 -24.986 68.596 -6.109 1.00 99.99 C ATOM 5312 CB GLU 346 -23.919 67.506 -6.209 1.00 99.99 C ATOM 5315 CG GLU 346 -22.920 67.182 -5.094 1.00 99.99 C ATOM 5318 CD GLU 346 -21.801 68.185 -4.785 1.00 99.99 C ATOM 5319 OE1 GLU 346 -21.857 69.294 -5.330 1.00 99.99 O ATOM 5320 OE2 GLU 346 -20.881 67.873 -4.002 1.00 99.99 O ATOM 5321 C GLU 346 -25.631 68.630 -7.462 1.00 99.99 C ATOM 5322 O GLU 346 -25.063 69.292 -8.304 1.00 99.99 O ATOM 5323 N ASN 347 -26.810 67.983 -7.577 1.00 99.99 N ATOM 5325 CA ASN 347 -27.703 67.876 -8.676 1.00 99.99 C ATOM 5327 CB ASN 347 -27.537 66.591 -9.437 1.00 99.99 C ATOM 5330 CG ASN 347 -26.151 66.381 -9.970 1.00 99.99 C ATOM 5331 OD1 ASN 347 -25.731 67.064 -10.888 1.00 99.99 O ATOM 5332 ND2 ASN 347 -25.433 65.435 -9.378 1.00 99.99 N ATOM 5335 C ASN 347 -29.065 68.504 -8.647 1.00 99.99 C ATOM 5336 O ASN 347 -29.425 69.075 -9.673 1.00 99.99 O ATOM 5337 N LYS 348 -29.783 68.448 -7.530 1.00 99.99 N ATOM 5339 CA LYS 348 -31.033 69.102 -7.303 1.00 99.99 C ATOM 5341 CB LYS 348 -31.897 68.283 -6.398 1.00 99.99 C ATOM 5344 CG LYS 348 -32.372 67.022 -7.019 1.00 99.99 C ATOM 5347 CD LYS 348 -33.316 66.241 -6.190 1.00 99.99 C ATOM 5350 CE LYS 348 -34.563 66.913 -5.719 1.00 99.99 C ATOM 5353 NZ LYS 348 -35.183 67.891 -6.602 1.00 99.99 N ATOM 5357 C LYS 348 -30.991 70.444 -6.873 1.00 99.99 C ATOM 5358 O LYS 348 -30.479 70.737 -6.056 1.00 99.99 O ATOM 5359 N GLU 386 -31.473 71.503 -7.295 1.00 99.99 N ATOM 5361 CA GLU 386 -31.287 72.876 -6.740 1.00 99.99 C ATOM 5363 CB GLU 386 -30.376 73.814 -7.542 1.00 99.99 C ATOM 5366 CG GLU 386 -30.383 75.206 -7.247 1.00 99.99 C ATOM 5369 CD GLU 386 -30.269 75.416 -6.096 1.00 99.99 C ATOM 5370 OE1 GLU 386 -30.996 74.890 -4.914 1.00 99.99 O ATOM 5371 OE2 GLU 386 -28.914 76.235 -6.287 1.00 99.99 O ATOM 5372 C GLU 386 -32.772 73.209 -6.465 1.00 99.99 C ATOM 5373 O GLU 386 -33.695 72.433 -6.799 1.00 99.99 O ATOM 5374 N SER 387 -33.052 74.316 -5.802 1.00 99.99 N ATOM 5376 CA SER 387 -34.227 74.911 -5.326 1.00 99.99 C ATOM 5378 CB SER 387 -34.187 75.440 -3.909 1.00 99.99 C ATOM 5381 OG SER 387 -33.714 76.669 -3.689 1.00 99.99 O ATOM 5383 C SER 387 -34.751 76.132 -6.060 1.00 99.99 C ATOM 5384 O SER 387 -34.059 77.108 -6.305 1.00 99.99 O ATOM 5385 N ILE 388 -36.038 76.147 -6.340 1.00 99.99 N ATOM 5387 CA ILE 388 -36.628 77.285 -6.949 1.00 99.99 C ATOM 5389 CB ILE 388 -37.302 76.975 -8.267 1.00 99.99 C ATOM 5391 CG1 ILE 388 -36.370 76.327 -9.261 1.00 99.99 C ATOM 5394 CG2 ILE 388 -37.807 78.202 -8.858 1.00 99.99 C ATOM 5398 CD1 ILE 388 -36.927 76.082 -10.620 1.00 99.99 C ATOM 5402 C ILE 388 -37.513 77.779 -5.833 1.00 99.99 C ATOM 5403 O ILE 388 -38.259 77.006 -5.235 1.00 99.99 O ATOM 5404 N LEU 389 -37.394 79.051 -5.515 1.00 99.99 N ATOM 5406 CA LEU 389 -38.142 79.693 -4.474 1.00 99.99 C ATOM 5408 CB LEU 389 -37.187 80.393 -3.531 1.00 99.99 C ATOM 5411 CG LEU 389 -36.037 79.689 -2.902 1.00 99.99 C ATOM 5413 CD1 LEU 389 -35.291 80.596 -1.980 1.00 99.99 C ATOM 5417 CD2 LEU 389 -36.448 78.455 -2.197 1.00 99.99 C ATOM 5421 C LEU 389 -39.255 80.565 -5.013 1.00 99.99 C ATOM 5422 O LEU 389 -38.848 81.502 -5.672 1.00 99.99 O ATOM 5423 N THR 390 -40.565 80.364 -4.809 1.00 99.99 N ATOM 5425 CA THR 390 -41.444 81.411 -5.313 1.00 99.99 C ATOM 5427 CB THR 390 -42.591 80.928 -6.207 1.00 99.99 C ATOM 5429 OG1 THR 390 -43.502 81.960 -6.513 1.00 99.99 O ATOM 5431 CG2 THR 390 -43.324 79.803 -5.578 1.00 99.99 C ATOM 5435 C THR 390 -41.907 81.962 -3.981 1.00 99.99 C ATOM 5436 O THR 390 -42.147 81.241 -3.023 1.00 99.99 O ATOM 5437 N LEU 391 -42.092 83.251 -3.958 1.00 99.99 N ATOM 5439 CA LEU 391 -42.467 84.100 -2.853 1.00 99.99 C ATOM 5441 CB LEU 391 -41.154 84.634 -2.313 1.00 99.99 C ATOM 5444 CG LEU 391 -40.514 85.813 -2.965 1.00 99.99 C ATOM 5446 CD1 LEU 391 -39.119 85.953 -2.652 1.00 99.99 C ATOM 5450 CD2 LEU 391 -40.571 85.724 -4.362 1.00 99.99 C ATOM 5454 C LEU 391 -43.638 85.072 -3.211 1.00 99.99 C ATOM 5455 O LEU 391 -43.992 85.399 -4.355 1.00 99.99 O ATOM 5456 N PHE 392 -44.332 85.375 -2.129 1.00 99.99 N ATOM 5458 CA PHE 392 -45.581 86.063 -1.988 1.00 99.99 C ATOM 5460 CB PHE 392 -46.759 85.227 -1.535 1.00 99.99 C ATOM 5463 CG PHE 392 -48.039 85.846 -1.748 1.00 99.99 C ATOM 5464 CD1 PHE 392 -48.471 85.752 -2.947 1.00 99.99 C ATOM 5466 CD2 PHE 392 -48.704 86.597 -0.755 1.00 99.99 C ATOM 5468 CE1 PHE 392 -49.560 86.302 -2.842 1.00 99.99 C ATOM 5470 CE2 PHE 392 -49.859 87.259 -0.936 1.00 99.99 C ATOM 5472 CZ PHE 392 -50.376 86.942 -1.970 1.00 99.99 C ATOM 5474 C PHE 392 -45.383 87.236 -1.187 1.00 99.99 C ATOM 5475 O PHE 392 -44.697 87.063 -0.235 1.00 99.99 O ATOM 5476 N ASP 393 -46.163 88.283 -1.376 1.00 99.99 N ATOM 5478 CA ASP 393 -46.152 89.553 -0.611 1.00 99.99 C ATOM 5480 CB ASP 393 -47.223 90.562 -1.119 1.00 99.99 C ATOM 5483 CG ASP 393 -47.134 91.547 -2.142 1.00 99.99 C ATOM 5484 OD1 ASP 393 -46.214 91.830 -2.810 1.00 99.99 O ATOM 5485 OD2 ASP 393 -47.993 92.338 -2.315 1.00 99.99 O ATOM 5486 C ASP 393 -46.817 89.231 0.603 1.00 99.99 C ATOM 5487 O ASP 393 -47.684 89.845 0.960 1.00 99.99 O ATOM 5488 N LEU 394 -46.661 88.184 1.271 1.00 99.99 N ATOM 5490 CA LEU 394 -47.366 87.769 2.446 1.00 99.99 C ATOM 5492 CB LEU 394 -48.829 87.655 2.612 1.00 99.99 C ATOM 5495 CG LEU 394 -49.783 88.717 3.004 1.00 99.99 C ATOM 5497 CD1 LEU 394 -49.385 89.973 2.737 1.00 99.99 C ATOM 5501 CD2 LEU 394 -51.078 88.573 2.338 1.00 99.99 C ATOM 5505 C LEU 394 -46.835 86.648 3.109 1.00 99.99 C ATOM 5506 O LEU 394 -46.690 85.741 2.320 1.00 99.99 O ATOM 5507 N GLY 395 -46.704 86.659 4.444 1.00 99.99 N ATOM 5509 CA GLY 395 -46.382 85.500 5.175 1.00 99.99 C ATOM 5512 C GLY 395 -46.301 85.525 6.597 1.00 99.99 C ATOM 5513 O GLY 395 -45.941 86.569 7.042 1.00 99.99 O ATOM 5514 N TYR 396 -46.650 84.512 7.356 1.00 99.99 N ATOM 5516 CA TYR 396 -46.718 84.470 8.774 1.00 99.99 C ATOM 5518 CB TYR 396 -45.356 84.426 9.413 1.00 99.99 C ATOM 5521 CG TYR 396 -44.672 83.184 9.128 1.00 99.99 C ATOM 5522 CD1 TYR 396 -45.051 82.055 9.777 1.00 99.99 C ATOM 5524 CD2 TYR 396 -43.680 83.174 8.227 1.00 99.99 C ATOM 5526 CE1 TYR 396 -44.158 81.119 9.595 1.00 99.99 C ATOM 5528 CE2 TYR 396 -42.973 82.171 8.552 1.00 99.99 C ATOM 5530 CZ TYR 396 -43.477 81.010 8.407 1.00 99.99 C ATOM 5531 OH TYR 396 -43.017 79.975 7.323 1.00 99.99 H ATOM 5533 C TYR 396 -48.026 85.203 9.102 1.00 99.99 C ATOM 5534 O TYR 396 -48.945 84.696 9.752 1.00 99.99 O ATOM 5535 N VAL 397 -48.169 86.406 8.523 1.00 99.99 N ATOM 5537 CA VAL 397 -49.330 87.227 8.670 1.00 99.99 C ATOM 5539 CB VAL 397 -49.049 88.694 8.438 1.00 99.99 C ATOM 5541 CG1 VAL 397 -47.924 89.109 9.269 1.00 99.99 C ATOM 5545 CG2 VAL 397 -48.800 89.003 7.008 1.00 99.99 C ATOM 5549 C VAL 397 -50.428 86.816 7.714 1.00 99.99 C ATOM 5550 O VAL 397 -51.569 87.247 7.853 1.00 99.99 O ATOM 5551 N ASP 398 -50.058 86.025 6.710 1.00 99.99 N ATOM 5553 CA ASP 398 -51.023 85.526 5.737 1.00 99.99 C ATOM 5555 CB ASP 398 -50.333 84.948 4.557 1.00 99.99 C ATOM 5558 CG ASP 398 -51.163 84.803 3.363 1.00 99.99 C ATOM 5559 OD1 ASP 398 -51.643 85.629 2.637 1.00 99.99 O ATOM 5560 OD2 ASP 398 -51.248 83.687 3.185 1.00 99.99 O ATOM 5561 C ASP 398 -51.812 84.271 6.112 1.00 99.99 C ATOM 5562 O ASP 398 -52.577 83.702 5.348 1.00 99.99 O ATOM 5563 N LEU 399 -51.624 83.755 7.279 1.00 99.99 N ATOM 5565 CA LEU 399 -52.141 82.452 7.615 1.00 99.99 C ATOM 5567 CB LEU 399 -53.442 82.116 7.730 1.00 99.99 C ATOM 5570 CG LEU 399 -54.480 83.035 7.688 1.00 99.99 C ATOM 5572 CD1 LEU 399 -55.606 82.389 7.455 1.00 99.99 C ATOM 5576 CD2 LEU 399 -54.158 83.728 9.007 1.00 99.99 C ATOM 5580 C LEU 399 -51.946 81.173 6.660 1.00 99.99 C ATOM 5581 O LEU 399 -52.642 80.157 6.432 1.00 99.99 O ATOM 5582 N GLN 400 -50.762 81.063 6.404 1.00 99.99 N ATOM 5584 CA GLN 400 -50.130 79.802 6.398 1.00 99.99 C ATOM 5586 CB GLN 400 -48.900 79.909 5.657 1.00 99.99 C ATOM 5589 CG GLN 400 -49.207 79.476 4.430 1.00 99.99 C ATOM 5592 CD GLN 400 -50.224 80.067 3.487 1.00 99.99 C ATOM 5593 OE1 GLN 400 -50.161 81.247 3.241 1.00 99.99 O ATOM 5594 NE2 GLN 400 -50.897 79.167 2.717 1.00 99.99 N ATOM 5597 C GLN 400 -49.562 79.607 7.834 1.00 99.99 C ATOM 5598 O GLN 400 -48.708 78.830 8.276 1.00 99.99 O ATOM 5599 N ASP 401 -49.867 80.490 8.696 1.00 99.99 N ATOM 5601 CA ASP 401 -49.665 80.394 10.126 1.00 99.99 C ATOM 5603 CB ASP 401 -49.632 81.326 11.256 1.00 99.99 C ATOM 5606 CG ASP 401 -50.507 80.888 12.432 1.00 99.99 C ATOM 5607 OD1 ASP 401 -51.666 80.541 12.172 1.00 99.99 O ATOM 5608 OD2 ASP 401 -50.020 80.836 13.570 1.00 99.99 O ATOM 5609 C ASP 401 -49.667 78.965 10.600 1.00 99.99 C ATOM 5610 O ASP 401 -48.772 78.516 11.278 1.00 99.99 O ATOM 5611 N ARG 402 -50.622 78.258 10.012 1.00 99.99 N ATOM 5613 CA ARG 402 -50.746 76.841 10.044 1.00 99.99 C ATOM 5615 CB ARG 402 -52.118 76.532 9.506 1.00 99.99 C ATOM 5618 CG ARG 402 -53.237 77.342 10.071 1.00 99.99 C ATOM 5621 CD ARG 402 -54.498 77.223 9.334 1.00 99.99 C ATOM 5624 NE ARG 402 -55.489 78.126 9.797 1.00 99.99 N ATOM 5626 CZ ARG 402 -56.741 78.082 9.235 1.00 99.99 C ATOM 5627 NH1 ARG 402 -57.084 77.355 8.254 1.00 99.99 H ATOM 5630 NH2 ARG 402 -57.852 78.708 9.417 1.00 99.99 H ATOM 5633 C ARG 402 -49.529 76.034 9.608 1.00 99.99 C ATOM 5634 O ARG 402 -49.037 75.250 10.366 1.00 99.99 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 192 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 100.12 31.0 42 26.9 156 ARMSMC SECONDARY STRUCTURE . . 109.57 20.0 20 19.2 104 ARMSMC SURFACE . . . . . . . . 98.96 30.6 36 34.6 104 ARMSMC BURIED . . . . . . . . 106.83 33.3 6 11.5 52 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 97.69 47.6 21 28.8 73 ARMSSC1 RELIABLE SIDE CHAINS . 100.09 45.0 20 27.8 72 ARMSSC1 SECONDARY STRUCTURE . . 116.91 27.3 11 22.4 49 ARMSSC1 SURFACE . . . . . . . . 98.40 44.4 18 36.0 50 ARMSSC1 BURIED . . . . . . . . 93.27 66.7 3 13.0 23 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 64.00 50.0 18 28.1 64 ARMSSC2 RELIABLE SIDE CHAINS . 68.56 46.2 13 32.5 40 ARMSSC2 SECONDARY STRUCTURE . . 65.55 66.7 9 21.4 42 ARMSSC2 SURFACE . . . . . . . . 61.02 50.0 16 36.4 44 ARMSSC2 BURIED . . . . . . . . 84.09 50.0 2 10.0 20 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 92.69 33.3 6 35.3 17 ARMSSC3 RELIABLE SIDE CHAINS . 71.47 40.0 5 33.3 15 ARMSSC3 SECONDARY STRUCTURE . . 98.53 33.3 3 30.0 10 ARMSSC3 SURFACE . . . . . . . . 92.69 33.3 6 37.5 16 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 105.11 50.0 2 22.2 9 ARMSSC4 RELIABLE SIDE CHAINS . 105.11 50.0 2 22.2 9 ARMSSC4 SECONDARY STRUCTURE . . 9.66 100.0 1 20.0 5 ARMSSC4 SURFACE . . . . . . . . 105.11 50.0 2 25.0 8 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.80 (Number of atoms: 23) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.80 23 29.1 79 CRMSCA CRN = ALL/NP . . . . . 0.3825 CRMSCA SECONDARY STRUCTURE . . 10.41 11 21.2 52 CRMSCA SURFACE . . . . . . . . 8.55 20 37.7 53 CRMSCA BURIED . . . . . . . . 10.27 3 11.5 26 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.04 114 29.0 393 CRMSMC SECONDARY STRUCTURE . . 10.53 55 21.2 260 CRMSMC SURFACE . . . . . . . . 8.82 99 37.6 263 CRMSMC BURIED . . . . . . . . 10.37 15 11.5 130 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.37 100 30.5 328 CRMSSC RELIABLE SIDE CHAINS . 11.40 86 32.1 268 CRMSSC SECONDARY STRUCTURE . . 12.77 49 22.2 221 CRMSSC SURFACE . . . . . . . . 11.36 89 39.4 226 CRMSSC BURIED . . . . . . . . 11.39 11 10.8 102 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.27 192 29.8 644 CRMSALL SECONDARY STRUCTURE . . 11.73 93 21.7 429 CRMSALL SURFACE . . . . . . . . 10.19 169 38.6 438 CRMSALL BURIED . . . . . . . . 10.81 23 11.2 206 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 92.260 0.859 0.871 23 29.1 79 ERRCA SECONDARY STRUCTURE . . 90.344 0.826 0.842 11 21.2 52 ERRCA SURFACE . . . . . . . . 92.625 0.866 0.877 20 37.7 53 ERRCA BURIED . . . . . . . . 89.831 0.816 0.832 3 11.5 26 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 91.975 0.854 0.866 114 29.0 393 ERRMC SECONDARY STRUCTURE . . 90.251 0.825 0.841 55 21.2 260 ERRMC SURFACE . . . . . . . . 92.300 0.860 0.872 99 37.6 263 ERRMC BURIED . . . . . . . . 89.831 0.816 0.832 15 11.5 130 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 89.458 0.812 0.830 100 30.5 328 ERRSC RELIABLE SIDE CHAINS . 89.434 0.812 0.830 86 32.1 268 ERRSC SECONDARY STRUCTURE . . 88.131 0.791 0.813 49 22.2 221 ERRSC SURFACE . . . . . . . . 89.539 0.814 0.831 89 39.4 226 ERRSC BURIED . . . . . . . . 88.801 0.799 0.818 11 10.8 102 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 90.733 0.834 0.848 192 29.8 644 ERRALL SECONDARY STRUCTURE . . 89.170 0.808 0.827 93 21.7 429 ERRALL SURFACE . . . . . . . . 90.914 0.837 0.852 169 38.6 438 ERRALL BURIED . . . . . . . . 89.398 0.809 0.826 23 11.2 206 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 3 4 7 16 23 79 DISTCA CA (P) 0.00 3.80 5.06 8.86 20.25 79 DISTCA CA (RMS) 0.00 1.54 1.71 2.78 6.31 DISTCA ALL (N) 2 11 16 36 106 192 644 DISTALL ALL (P) 0.31 1.71 2.48 5.59 16.46 644 DISTALL ALL (RMS) 0.75 1.46 1.83 3.24 6.61 DISTALL END of the results output