####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 23 ( 187), selected 23 , name T0547TS117_1_1-D4 # Molecule2: number of CA atoms 56 ( 459), selected 23 , name T0547-D4.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0547TS117_1_1-D4.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 558 - 576 4.80 7.53 LCS_AVERAGE: 32.38 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 565 - 576 1.90 10.15 LCS_AVERAGE: 20.57 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 566 - 576 0.67 11.07 LCS_AVERAGE: 15.45 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 23 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT Q 554 Q 554 8 11 14 0 8 8 9 10 11 11 11 12 12 13 13 13 15 16 17 19 20 22 23 LCS_GDT S 555 S 555 8 11 14 3 8 8 9 10 11 11 11 12 12 13 13 13 15 16 17 19 19 20 23 LCS_GDT I 556 I 556 8 11 14 3 8 8 9 10 11 11 11 12 12 13 13 13 15 16 17 19 19 22 23 LCS_GDT L 557 L 557 8 11 14 5 8 8 9 10 11 11 11 12 12 13 13 13 15 16 17 19 20 22 23 LCS_GDT D 558 D 558 8 11 19 5 8 8 9 10 11 11 11 12 12 13 13 13 16 19 19 19 20 22 23 LCS_GDT T 559 T 559 8 11 19 5 8 8 9 10 11 11 11 12 12 13 16 18 18 19 19 19 20 22 23 LCS_GDT L 560 L 560 8 11 19 5 8 8 9 10 11 11 11 12 12 13 16 18 18 19 19 19 20 22 23 LCS_GDT E 561 E 561 8 11 19 5 8 8 9 10 11 11 11 12 12 14 16 18 18 19 19 19 20 22 23 LCS_GDT D 562 D 562 4 11 19 4 4 6 9 12 13 14 15 15 15 15 16 18 18 19 19 19 20 22 23 LCS_GDT L 563 L 563 4 11 19 4 4 4 7 9 11 13 15 15 15 15 16 18 18 19 19 19 20 22 23 LCS_GDT D 564 D 564 3 11 19 0 3 7 9 11 13 14 15 15 15 15 16 18 18 19 19 19 20 22 23 LCS_GDT Y 565 Y 565 3 12 19 3 3 3 4 6 8 14 15 15 15 15 16 18 18 19 19 19 20 22 23 LCS_GDT D 566 D 566 11 12 19 7 11 11 11 12 13 14 15 15 15 15 16 18 18 19 19 19 20 22 23 LCS_GDT I 567 I 567 11 12 19 7 11 11 11 12 13 14 15 15 15 15 16 18 18 19 19 19 20 22 23 LCS_GDT H 568 H 568 11 12 19 7 11 11 11 12 13 14 15 15 15 15 16 18 18 19 19 19 20 22 23 LCS_GDT A 569 A 569 11 12 19 7 11 11 11 12 13 14 15 15 15 15 16 18 18 19 19 19 20 22 23 LCS_GDT I 570 I 570 11 12 19 7 11 11 11 12 13 14 15 15 15 15 16 18 18 19 19 19 20 22 23 LCS_GDT M 571 M 571 11 12 19 7 11 11 11 12 13 14 15 15 15 15 16 18 18 19 19 19 20 22 23 LCS_GDT D 572 D 572 11 12 19 7 11 11 11 12 13 14 15 15 15 15 16 18 18 19 19 19 20 22 23 LCS_GDT I 573 I 573 11 12 19 7 11 11 11 12 13 14 15 15 15 15 16 18 18 19 19 19 20 22 23 LCS_GDT L 574 L 574 11 12 19 4 11 11 11 12 13 14 15 15 15 15 16 18 18 19 19 19 20 22 23 LCS_GDT N 575 N 575 11 12 19 4 11 11 11 12 13 14 15 15 15 15 16 18 18 19 19 19 20 22 23 LCS_GDT E 576 E 576 11 12 19 3 11 11 11 12 13 14 15 15 15 15 16 18 18 19 19 19 19 22 23 LCS_AVERAGE LCS_A: 22.80 ( 15.45 20.57 32.38 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 11 11 11 12 13 14 15 15 15 15 16 18 18 19 19 19 20 22 23 GDT PERCENT_AT 12.50 19.64 19.64 19.64 21.43 23.21 25.00 26.79 26.79 26.79 26.79 28.57 32.14 32.14 33.93 33.93 33.93 35.71 39.29 41.07 GDT RMS_LOCAL 0.31 0.67 0.67 0.67 1.35 1.70 2.07 2.40 2.40 2.40 2.40 3.12 4.16 4.16 4.80 4.80 4.80 6.01 6.41 6.72 GDT RMS_ALL_AT 11.32 11.07 11.07 11.07 9.64 9.61 9.60 9.29 9.29 9.29 9.29 8.88 7.97 7.97 7.53 7.53 7.53 6.83 6.76 6.72 # Checking swapping # possible swapping detected: E 561 E 561 # possible swapping detected: D 562 D 562 # possible swapping detected: D 564 D 564 # possible swapping detected: Y 565 Y 565 # possible swapping detected: D 566 D 566 # possible swapping detected: D 572 D 572 # possible swapping detected: E 576 E 576 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA Q 554 Q 554 18.288 0 0.073 0.917 20.373 0.000 0.000 LGA S 555 S 555 20.166 0 0.120 0.174 21.821 0.000 0.000 LGA I 556 I 556 19.475 0 0.067 0.092 25.793 0.000 0.000 LGA L 557 L 557 16.978 0 0.147 1.289 20.920 0.000 0.000 LGA D 558 D 558 13.799 0 0.056 0.238 18.567 0.000 0.000 LGA T 559 T 559 10.881 0 0.020 0.047 12.901 0.833 0.476 LGA L 560 L 560 10.240 0 0.292 0.319 14.622 2.500 1.250 LGA E 561 E 561 8.620 0 0.188 0.820 14.547 10.714 4.762 LGA D 562 D 562 2.843 0 0.166 1.183 4.968 62.976 59.167 LGA L 563 L 563 4.410 0 0.599 0.578 11.449 43.452 23.393 LGA D 564 D 564 1.889 0 0.467 0.801 5.864 57.976 47.202 LGA Y 565 Y 565 3.724 0 0.687 0.457 15.888 57.619 20.952 LGA D 566 D 566 2.449 0 0.585 1.294 8.044 67.381 44.881 LGA I 567 I 567 3.647 0 0.063 0.110 5.751 50.119 39.583 LGA H 568 H 568 2.855 0 0.076 0.968 8.567 61.190 35.905 LGA A 569 A 569 1.099 0 0.076 0.089 1.748 81.548 81.524 LGA I 570 I 570 1.638 0 0.000 0.103 3.145 79.286 68.274 LGA M 571 M 571 1.051 0 0.040 1.167 4.922 85.952 69.762 LGA D 572 D 572 0.761 0 0.113 0.119 1.786 90.595 83.929 LGA I 573 I 573 0.798 0 0.028 1.571 3.666 88.333 76.012 LGA L 574 L 574 1.540 0 0.109 0.138 2.081 72.976 76.131 LGA N 575 N 575 1.702 0 0.145 0.856 4.092 71.071 68.571 LGA E 576 E 576 1.574 0 0.489 1.048 3.843 69.048 62.857 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 23 92 92 100.00 187 187 100.00 56 SUMMARY(RMSD_GDC): 6.721 6.606 7.648 18.814 15.440 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 23 56 4.0 15 2.40 25.000 23.839 0.600 LGA_LOCAL RMSD: 2.400 Number of atoms: 15 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.285 Number of assigned atoms: 23 Std_ASGN_ATOMS RMSD: 6.721 Standard rmsd on all 23 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.316530 * X + -0.425784 * Y + -0.847653 * Z + -32.175602 Y_new = 0.212980 * X + -0.838885 * Y + 0.500911 * Z + 93.740814 Z_new = -0.924364 * X + -0.339087 * Y + -0.174849 * Z + -66.809097 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.592277 1.179364 -2.046882 [DEG: 33.9350 67.5726 -117.2777 ] ZXZ: -2.104526 1.746549 -1.922388 [DEG: -120.5805 100.0699 -110.1447 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0547TS117_1_1-D4 REMARK 2: T0547-D4.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0547TS117_1_1-D4.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 23 56 4.0 15 2.40 23.839 6.72 REMARK ---------------------------------------------------------- MOLECULE T0547TS117_1_1-D4 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 1 REMARK PFRMAT TS REMARK TARGET T0547 REMARK PARENT N/A ATOM 3603 N GLN 554 -17.064 105.550 -40.993 1.00 0.00 N ATOM 3604 CA GLN 554 -16.181 106.036 -39.939 1.00 0.00 C ATOM 3605 C GLN 554 -14.700 105.833 -40.248 1.00 0.00 C ATOM 3606 O GLN 554 -14.340 105.127 -41.199 1.00 0.00 O ATOM 3607 CB GLN 554 -16.466 105.309 -38.624 1.00 0.00 C ATOM 3608 CG GLN 554 -17.866 105.538 -38.078 1.00 0.00 C ATOM 3609 CD GLN 554 -18.141 106.998 -37.777 1.00 0.00 C ATOM 3610 OE1 GLN 554 -17.382 107.647 -37.057 1.00 0.00 O ATOM 3611 NE2 GLN 554 -19.231 107.518 -38.327 1.00 0.00 N ATOM 3612 N SER 555 -13.812 106.442 -39.458 1.00 0.00 N ATOM 3613 CA SER 555 -12.391 106.360 -39.736 1.00 0.00 C ATOM 3614 C SER 555 -11.520 106.362 -38.478 1.00 0.00 C ATOM 3615 O SER 555 -12.002 106.324 -37.343 1.00 0.00 O ATOM 3616 CB SER 555 -11.943 107.550 -40.587 1.00 0.00 C ATOM 3617 OG SER 555 -12.053 108.764 -39.865 1.00 0.00 O ATOM 3618 N ILE 556 -10.206 106.407 -38.736 1.00 0.00 N ATOM 3619 CA ILE 556 -9.119 106.342 -37.764 1.00 0.00 C ATOM 3620 C ILE 556 -9.284 107.175 -36.495 1.00 0.00 C ATOM 3621 O ILE 556 -8.986 106.692 -35.391 1.00 0.00 O ATOM 3622 CB ILE 556 -7.789 106.824 -38.373 1.00 0.00 C ATOM 3623 CG1 ILE 556 -7.295 105.832 -39.429 1.00 0.00 C ATOM 3624 CG2 ILE 556 -6.724 106.949 -37.293 1.00 0.00 C ATOM 3625 CD1 ILE 556 -6.125 106.338 -40.242 1.00 0.00 C ATOM 3626 N LEU 557 -9.753 108.423 -36.609 1.00 0.00 N ATOM 3627 CA LEU 557 -9.917 109.268 -35.440 1.00 0.00 C ATOM 3628 C LEU 557 -11.293 109.177 -34.794 1.00 0.00 C ATOM 3629 O LEU 557 -11.431 109.444 -33.600 1.00 0.00 O ATOM 3630 CB LEU 557 -9.705 110.738 -35.807 1.00 0.00 C ATOM 3631 CG LEU 557 -8.315 111.114 -36.326 1.00 0.00 C ATOM 3632 CD1 LEU 557 -8.274 112.576 -36.742 1.00 0.00 C ATOM 3633 CD2 LEU 557 -7.263 110.895 -35.250 1.00 0.00 C ATOM 3634 N ASP 558 -12.331 108.802 -35.558 1.00 0.00 N ATOM 3635 CA ASP 558 -13.696 108.687 -35.028 1.00 0.00 C ATOM 3636 C ASP 558 -13.782 107.531 -34.039 1.00 0.00 C ATOM 3637 O ASP 558 -14.531 107.548 -33.063 1.00 0.00 O ATOM 3638 CB ASP 558 -14.691 108.433 -36.161 1.00 0.00 C ATOM 3639 CG ASP 558 -14.935 109.665 -37.009 1.00 0.00 C ATOM 3640 OD1 ASP 558 -14.532 110.768 -36.585 1.00 0.00 O ATOM 3641 OD2 ASP 558 -15.530 109.528 -38.099 1.00 0.00 O ATOM 3642 N THR 559 -12.961 106.528 -34.363 1.00 0.00 N ATOM 3643 CA THR 559 -12.547 105.443 -33.482 1.00 0.00 C ATOM 3644 C THR 559 -12.277 105.860 -32.032 1.00 0.00 C ATOM 3645 O THR 559 -12.687 105.166 -31.101 1.00 0.00 O ATOM 3646 CB THR 559 -11.244 104.785 -33.973 1.00 0.00 C ATOM 3647 OG1 THR 559 -11.435 104.267 -35.296 1.00 0.00 O ATOM 3648 CG2 THR 559 -10.844 103.643 -33.051 1.00 0.00 C ATOM 3649 N LEU 560 -11.590 106.989 -31.818 1.00 0.00 N ATOM 3650 CA LEU 560 -11.304 107.476 -30.478 1.00 0.00 C ATOM 3651 C LEU 560 -12.039 108.773 -30.162 1.00 0.00 C ATOM 3652 O LEU 560 -11.669 109.489 -29.232 1.00 0.00 O ATOM 3653 CB LEU 560 -9.807 107.745 -30.315 1.00 0.00 C ATOM 3654 CG LEU 560 -8.879 106.542 -30.493 1.00 0.00 C ATOM 3655 CD1 LEU 560 -7.421 106.973 -30.416 1.00 0.00 C ATOM 3656 CD2 LEU 560 -9.126 105.507 -29.406 1.00 0.00 C ATOM 3657 N GLU 561 -13.095 109.123 -30.913 1.00 0.00 N ATOM 3658 CA GLU 561 -13.801 110.394 -30.738 1.00 0.00 C ATOM 3659 C GLU 561 -14.547 110.497 -29.404 1.00 0.00 C ATOM 3660 O GLU 561 -15.063 111.553 -29.032 1.00 0.00 O ATOM 3661 CB GLU 561 -14.839 110.587 -31.844 1.00 0.00 C ATOM 3662 CG GLU 561 -16.002 109.610 -31.782 1.00 0.00 C ATOM 3663 CD GLU 561 -16.990 109.806 -32.915 1.00 0.00 C ATOM 3664 OE1 GLU 561 -16.750 110.689 -33.766 1.00 0.00 O ATOM 3665 OE2 GLU 561 -18.004 109.078 -32.952 1.00 0.00 O ATOM 3666 N ASP 562 -14.613 109.389 -28.659 1.00 0.00 N ATOM 3667 CA ASP 562 -15.079 109.390 -27.277 1.00 0.00 C ATOM 3668 C ASP 562 -14.013 109.862 -26.279 1.00 0.00 C ATOM 3669 O ASP 562 -14.181 109.699 -25.070 1.00 0.00 O ATOM 3670 CB ASP 562 -15.498 107.981 -26.851 1.00 0.00 C ATOM 3671 CG ASP 562 -14.333 107.011 -26.823 1.00 0.00 C ATOM 3672 OD1 ASP 562 -13.196 107.439 -27.114 1.00 0.00 O ATOM 3673 OD2 ASP 562 -14.557 105.823 -26.510 1.00 0.00 O ATOM 3674 N LEU 563 -12.906 110.450 -26.753 1.00 0.00 N ATOM 3675 CA LEU 563 -11.952 111.153 -25.907 1.00 0.00 C ATOM 3676 C LEU 563 -12.563 112.340 -25.169 1.00 0.00 C ATOM 3677 O LEU 563 -13.437 113.041 -25.685 1.00 0.00 O ATOM 3678 CB LEU 563 -10.791 111.694 -26.743 1.00 0.00 C ATOM 3679 CG LEU 563 -9.863 110.652 -27.371 1.00 0.00 C ATOM 3680 CD1 LEU 563 -8.840 111.320 -28.277 1.00 0.00 C ATOM 3681 CD2 LEU 563 -9.114 109.881 -26.295 1.00 0.00 C ATOM 3682 N ASP 564 -12.098 112.572 -23.941 1.00 0.00 N ATOM 3683 CA ASP 564 -12.583 113.684 -23.140 1.00 0.00 C ATOM 3684 C ASP 564 -11.522 114.069 -22.119 1.00 0.00 C ATOM 3685 O ASP 564 -10.915 113.203 -21.481 1.00 0.00 O ATOM 3686 CB ASP 564 -13.866 113.295 -22.403 1.00 0.00 C ATOM 3687 CG ASP 564 -14.550 114.482 -21.757 1.00 0.00 C ATOM 3688 OD1 ASP 564 -14.094 115.624 -21.978 1.00 0.00 O ATOM 3689 OD2 ASP 564 -15.543 114.272 -21.029 1.00 0.00 O ATOM 3690 N TYR 565 -11.294 115.376 -21.958 1.00 0.00 N ATOM 3691 CA TYR 565 -10.319 115.891 -21.002 1.00 0.00 C ATOM 3692 C TYR 565 -10.817 115.845 -19.559 1.00 0.00 C ATOM 3693 O TYR 565 -10.029 115.810 -18.613 1.00 0.00 O ATOM 3694 CB TYR 565 -9.979 117.349 -21.315 1.00 0.00 C ATOM 3695 CG TYR 565 -9.154 117.530 -22.569 1.00 0.00 C ATOM 3696 CD1 TYR 565 -9.744 117.954 -23.753 1.00 0.00 C ATOM 3697 CD2 TYR 565 -7.789 117.278 -22.565 1.00 0.00 C ATOM 3698 CE1 TYR 565 -8.999 118.122 -24.905 1.00 0.00 C ATOM 3699 CE2 TYR 565 -7.027 117.441 -23.706 1.00 0.00 C ATOM 3700 CZ TYR 565 -7.644 117.867 -24.882 1.00 0.00 C ATOM 3701 OH TYR 565 -6.899 118.033 -26.026 1.00 0.00 H ATOM 3702 N ASP 566 -12.145 115.845 -19.375 1.00 0.00 N ATOM 3703 CA ASP 566 -12.784 115.833 -18.059 1.00 0.00 C ATOM 3704 C ASP 566 -12.366 114.696 -17.138 1.00 0.00 C ATOM 3705 O ASP 566 -12.365 114.845 -15.913 1.00 0.00 O ATOM 3706 CB ASP 566 -14.303 115.716 -18.201 1.00 0.00 C ATOM 3707 CG ASP 566 -14.942 116.997 -18.700 1.00 0.00 C ATOM 3708 OD1 ASP 566 -14.252 118.039 -18.714 1.00 0.00 O ATOM 3709 OD2 ASP 566 -16.132 116.960 -19.078 1.00 0.00 O ATOM 3710 N ILE 567 -12.006 113.545 -17.717 1.00 0.00 N ATOM 3711 CA ILE 567 -11.521 112.405 -16.944 1.00 0.00 C ATOM 3712 C ILE 567 -10.176 112.714 -16.273 1.00 0.00 C ATOM 3713 O ILE 567 -9.907 112.263 -15.159 1.00 0.00 O ATOM 3714 CB ILE 567 -11.318 111.164 -17.834 1.00 0.00 C ATOM 3715 CG1 ILE 567 -12.665 110.650 -18.348 1.00 0.00 C ATOM 3716 CG2 ILE 567 -10.643 110.050 -17.049 1.00 0.00 C ATOM 3717 CD1 ILE 567 -12.544 109.603 -19.432 1.00 0.00 C ATOM 3718 N HIS 568 -9.319 113.488 -16.954 1.00 0.00 N ATOM 3719 CA HIS 568 -8.015 113.876 -16.423 1.00 0.00 C ATOM 3720 C HIS 568 -8.175 114.823 -15.234 1.00 0.00 C ATOM 3721 O HIS 568 -7.374 114.794 -14.296 1.00 0.00 O ATOM 3722 CB HIS 568 -7.189 114.589 -17.496 1.00 0.00 C ATOM 3723 CG HIS 568 -6.729 113.688 -18.601 1.00 0.00 C ATOM 3724 ND1 HIS 568 -5.848 112.649 -18.396 1.00 0.00 N ATOM 3725 CD2 HIS 568 -6.984 113.585 -20.031 1.00 0.00 C ATOM 3726 CE1 HIS 568 -5.626 112.026 -19.567 1.00 0.00 C ATOM 3727 NE2 HIS 568 -6.304 112.583 -20.551 1.00 0.00 N ATOM 3728 N ALA 569 -9.210 115.673 -15.261 1.00 0.00 N ATOM 3729 CA ALA 569 -9.569 116.493 -14.110 1.00 0.00 C ATOM 3730 C ALA 569 -9.939 115.665 -12.881 1.00 0.00 C ATOM 3731 O ALA 569 -9.563 116.018 -11.760 1.00 0.00 O ATOM 3732 CB ALA 569 -10.766 117.372 -14.437 1.00 0.00 C ATOM 3733 N ILE 570 -10.674 114.560 -13.068 1.00 0.00 N ATOM 3734 CA ILE 570 -10.980 113.627 -11.983 1.00 0.00 C ATOM 3735 C ILE 570 -9.697 112.990 -11.440 1.00 0.00 C ATOM 3736 O ILE 570 -9.521 112.874 -10.226 1.00 0.00 O ATOM 3737 CB ILE 570 -11.906 112.492 -12.459 1.00 0.00 C ATOM 3738 CG1 ILE 570 -13.293 113.042 -12.797 1.00 0.00 C ATOM 3739 CG2 ILE 570 -12.057 111.437 -11.373 1.00 0.00 C ATOM 3740 CD1 ILE 570 -14.182 112.053 -13.521 1.00 0.00 C ATOM 3741 N MET 571 -8.787 112.571 -12.333 1.00 0.00 N ATOM 3742 CA MET 571 -7.467 112.074 -11.937 1.00 0.00 C ATOM 3743 C MET 571 -6.666 113.092 -11.128 1.00 0.00 C ATOM 3744 O MET 571 -5.954 112.740 -10.184 1.00 0.00 O ATOM 3745 CB MET 571 -6.635 111.722 -13.172 1.00 0.00 C ATOM 3746 CG MET 571 -7.133 110.502 -13.930 1.00 0.00 C ATOM 3747 SD MET 571 -7.103 109.002 -12.930 1.00 0.00 S ATOM 3748 CE MET 571 -5.340 108.743 -12.760 1.00 0.00 C ATOM 3749 N ASP 572 -6.776 114.376 -11.496 1.00 0.00 N ATOM 3750 CA ASP 572 -6.158 115.460 -10.741 1.00 0.00 C ATOM 3751 C ASP 572 -6.736 115.616 -9.341 1.00 0.00 C ATOM 3752 O ASP 572 -5.992 115.900 -8.399 1.00 0.00 O ATOM 3753 CB ASP 572 -6.357 116.795 -11.461 1.00 0.00 C ATOM 3754 CG ASP 572 -5.497 116.921 -12.703 1.00 0.00 C ATOM 3755 OD1 ASP 572 -4.583 116.089 -12.880 1.00 0.00 O ATOM 3756 OD2 ASP 572 -5.739 117.851 -13.502 1.00 0.00 O ATOM 3757 N ILE 573 -8.054 115.435 -9.182 1.00 0.00 N ATOM 3758 CA ILE 573 -8.689 115.427 -7.864 1.00 0.00 C ATOM 3759 C ILE 573 -8.170 114.263 -7.018 1.00 0.00 C ATOM 3760 O ILE 573 -7.913 114.434 -5.824 1.00 0.00 O ATOM 3761 CB ILE 573 -10.219 115.282 -7.975 1.00 0.00 C ATOM 3762 CG1 ILE 573 -10.829 116.534 -8.606 1.00 0.00 C ATOM 3763 CG2 ILE 573 -10.836 115.086 -6.599 1.00 0.00 C ATOM 3764 CD1 ILE 573 -12.281 116.375 -8.996 1.00 0.00 C ATOM 3765 N LEU 574 -8.009 113.071 -7.607 1.00 0.00 N ATOM 3766 CA LEU 574 -7.456 111.913 -6.905 1.00 0.00 C ATOM 3767 C LEU 574 -6.039 112.097 -6.360 1.00 0.00 C ATOM 3768 O LEU 574 -5.642 111.425 -5.408 1.00 0.00 O ATOM 3769 CB LEU 574 -7.393 110.701 -7.838 1.00 0.00 C ATOM 3770 CG LEU 574 -8.736 110.117 -8.282 1.00 0.00 C ATOM 3771 CD1 LEU 574 -8.529 109.011 -9.306 1.00 0.00 C ATOM 3772 CD2 LEU 574 -9.488 109.533 -7.096 1.00 0.00 C ATOM 3773 N ASN 575 -5.258 113.008 -6.954 1.00 0.00 N ATOM 3774 CA ASN 575 -3.950 113.386 -6.427 1.00 0.00 C ATOM 3775 C ASN 575 -4.015 114.340 -5.234 1.00 0.00 C ATOM 3776 O ASN 575 -3.038 114.505 -4.502 1.00 0.00 O ATOM 3777 CB ASN 575 -3.120 114.087 -7.504 1.00 0.00 C ATOM 3778 CG ASN 575 -2.680 113.145 -8.606 1.00 0.00 C ATOM 3779 OD1 ASN 575 -2.616 111.931 -8.410 1.00 0.00 O ATOM 3780 ND2 ASN 575 -2.377 113.701 -9.774 1.00 0.00 N ATOM 3781 N GLU 576 -5.157 114.995 -4.998 1.00 0.00 N ATOM 3782 CA GLU 576 -5.293 115.920 -3.882 1.00 0.00 C ATOM 3783 C GLU 576 -5.435 115.199 -2.538 1.00 0.00 C ATOM 3784 O GLU 576 -5.443 116.430 -2.593 1.00 0.00 O ATOM 3785 CB GLU 576 -6.532 116.799 -4.064 1.00 0.00 C ATOM 3786 CG GLU 576 -6.485 117.692 -5.293 1.00 0.00 C ATOM 3787 CD GLU 576 -7.799 118.406 -5.545 1.00 0.00 C ATOM 3788 OE1 GLU 576 -8.764 118.157 -4.793 1.00 0.00 O ATOM 3789 OE2 GLU 576 -7.863 119.214 -6.496 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 187 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 50.70 75.0 44 40.0 110 ARMSMC SECONDARY STRUCTURE . . 21.04 84.8 33 47.1 70 ARMSMC SURFACE . . . . . . . . 55.88 73.5 34 37.8 90 ARMSMC BURIED . . . . . . . . 26.33 80.0 10 50.0 20 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 68.60 59.1 22 41.5 53 ARMSSC1 RELIABLE SIDE CHAINS . 68.60 59.1 22 42.3 52 ARMSSC1 SECONDARY STRUCTURE . . 74.47 56.2 16 48.5 33 ARMSSC1 SURFACE . . . . . . . . 76.31 52.9 17 39.5 43 ARMSSC1 BURIED . . . . . . . . 30.11 80.0 5 50.0 10 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 64.78 65.0 20 42.6 47 ARMSSC2 RELIABLE SIDE CHAINS . 61.02 64.3 14 46.7 30 ARMSSC2 SECONDARY STRUCTURE . . 67.45 66.7 15 48.4 31 ARMSSC2 SURFACE . . . . . . . . 56.47 68.8 16 42.1 38 ARMSSC2 BURIED . . . . . . . . 90.70 50.0 4 44.4 9 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 32.89 75.0 4 33.3 12 ARMSSC3 RELIABLE SIDE CHAINS . 37.76 66.7 3 30.0 10 ARMSSC3 SECONDARY STRUCTURE . . 37.76 66.7 3 33.3 9 ARMSSC3 SURFACE . . . . . . . . 37.94 66.7 3 30.0 10 ARMSSC3 BURIED . . . . . . . . 3.20 100.0 1 50.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 4 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.72 (Number of atoms: 23) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.72 23 41.1 56 CRMSCA CRN = ALL/NP . . . . . 0.2922 CRMSCA SECONDARY STRUCTURE . . 6.36 17 48.6 35 CRMSCA SURFACE . . . . . . . . 6.37 18 39.1 46 CRMSCA BURIED . . . . . . . . 7.87 5 50.0 10 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.76 115 41.4 278 CRMSMC SECONDARY STRUCTURE . . 6.41 85 48.9 174 CRMSMC SURFACE . . . . . . . . 6.49 90 39.5 228 CRMSMC BURIED . . . . . . . . 7.63 25 50.0 50 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 8.55 95 40.4 235 CRMSSC RELIABLE SIDE CHAINS . 8.51 79 41.4 191 CRMSSC SECONDARY STRUCTURE . . 8.07 68 45.0 151 CRMSSC SURFACE . . . . . . . . 8.37 77 39.3 196 CRMSSC BURIED . . . . . . . . 9.30 18 46.2 39 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 7.66 187 40.7 459 CRMSALL SECONDARY STRUCTURE . . 7.23 136 46.7 291 CRMSALL SURFACE . . . . . . . . 7.49 149 39.2 380 CRMSALL BURIED . . . . . . . . 8.32 38 48.1 79 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.317 1.000 0.500 23 41.1 56 ERRCA SECONDARY STRUCTURE . . 6.024 1.000 0.500 17 48.6 35 ERRCA SURFACE . . . . . . . . 5.997 1.000 0.500 18 39.1 46 ERRCA BURIED . . . . . . . . 7.468 1.000 0.500 5 50.0 10 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.350 1.000 0.500 115 41.4 278 ERRMC SECONDARY STRUCTURE . . 6.069 1.000 0.500 85 48.9 174 ERRMC SURFACE . . . . . . . . 6.107 1.000 0.500 90 39.5 228 ERRMC BURIED . . . . . . . . 7.226 1.000 0.500 25 50.0 50 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.978 1.000 0.500 95 40.4 235 ERRSC RELIABLE SIDE CHAINS . 7.891 1.000 0.500 79 41.4 191 ERRSC SECONDARY STRUCTURE . . 7.586 1.000 0.500 68 45.0 151 ERRSC SURFACE . . . . . . . . 7.756 1.000 0.500 77 39.3 196 ERRSC BURIED . . . . . . . . 8.930 1.000 0.500 18 46.2 39 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.128 1.000 0.500 187 40.7 459 ERRALL SECONDARY STRUCTURE . . 6.777 1.000 0.500 136 46.7 291 ERRALL SURFACE . . . . . . . . 6.932 1.000 0.500 149 39.2 380 ERRALL BURIED . . . . . . . . 7.892 1.000 0.500 38 48.1 79 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 2 5 20 23 56 DISTCA CA (P) 0.00 0.00 3.57 8.93 35.71 56 DISTCA CA (RMS) 0.00 0.00 2.79 3.49 5.91 DISTCA ALL (N) 0 2 12 39 155 187 459 DISTALL ALL (P) 0.00 0.44 2.61 8.50 33.77 459 DISTALL ALL (RMS) 0.00 1.78 2.58 3.72 6.45 DISTALL END of the results output