####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 26 ( 223), selected 26 , name T0547TS117_1_1-D3 # Molecule2: number of CA atoms 79 ( 644), selected 26 , name T0547-D3.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0547TS117_1_1-D3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 344 - 365 4.82 7.23 LONGEST_CONTINUOUS_SEGMENT: 22 345 - 366 4.57 7.15 LONGEST_CONTINUOUS_SEGMENT: 22 346 - 367 4.95 7.54 LCS_AVERAGE: 27.60 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 357 - 364 1.72 20.86 LCS_AVERAGE: 7.35 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 358 - 363 0.78 20.97 LCS_AVERAGE: 5.45 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 26 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT E 343 E 343 4 5 21 3 4 4 5 5 5 5 6 9 9 10 11 13 18 18 20 20 23 23 24 LCS_GDT Y 344 Y 344 4 5 22 3 4 4 5 5 5 6 8 11 13 15 18 18 20 22 22 22 23 23 24 LCS_GDT A 345 A 345 4 5 22 3 4 4 5 6 6 9 12 14 16 19 19 20 21 22 22 22 23 23 24 LCS_GDT E 346 E 346 4 5 22 3 4 4 5 5 6 9 11 15 17 19 19 20 21 22 22 22 23 23 24 LCS_GDT N 347 N 347 4 5 22 3 4 5 6 7 9 10 12 15 17 19 19 20 21 22 22 22 23 23 24 LCS_GDT K 348 K 348 5 5 22 3 4 5 6 7 9 10 12 15 17 19 19 20 21 22 22 22 23 23 24 LCS_GDT L 349 L 349 5 6 22 3 4 5 5 6 9 10 12 15 17 19 19 20 21 22 22 22 23 23 24 LCS_GDT I 350 I 350 5 6 22 3 4 5 5 7 9 10 12 15 17 19 19 20 21 22 22 22 23 23 24 LCS_GDT L 351 L 351 5 6 22 3 4 5 5 6 7 10 12 14 16 19 19 20 21 22 22 22 23 23 24 LCS_GDT K 352 K 352 5 6 22 3 4 5 5 6 7 10 12 15 17 19 19 20 21 22 22 22 23 23 24 LCS_GDT K 353 K 353 3 6 22 3 3 3 5 6 7 10 12 14 17 19 19 20 21 22 22 22 23 23 24 LCS_GDT Q 354 Q 354 3 6 22 0 3 3 5 6 7 10 12 15 17 19 19 20 21 22 22 22 23 23 24 LCS_GDT N 355 N 355 3 5 22 0 3 3 5 7 9 10 12 15 17 19 19 20 21 22 22 22 23 23 24 LCS_GDT P 356 P 356 3 4 22 1 4 5 6 7 9 10 12 15 17 19 19 20 21 22 22 22 23 23 24 LCS_GDT K 357 K 357 3 8 22 3 4 5 6 7 9 10 12 15 17 19 19 20 21 22 22 22 23 23 24 LCS_GDT L 358 L 358 6 8 22 3 4 6 6 7 8 10 12 14 17 19 19 20 21 22 22 22 23 23 24 LCS_GDT I 359 I 359 6 8 22 3 5 6 6 7 8 10 12 15 17 19 19 20 21 22 22 22 23 23 24 LCS_GDT D 360 D 360 6 8 22 3 5 6 6 7 8 10 12 15 17 19 19 20 21 22 22 22 23 23 24 LCS_GDT E 361 E 361 6 8 22 3 5 6 6 7 8 10 12 15 17 19 19 20 21 22 22 22 23 23 24 LCS_GDT L 362 L 362 6 8 22 3 5 6 6 7 8 8 9 11 13 18 19 20 21 22 22 22 23 23 24 LCS_GDT Y 363 Y 363 6 8 22 3 5 6 6 7 8 8 9 9 13 14 17 18 21 22 22 22 23 23 24 LCS_GDT D 364 D 364 4 8 22 3 4 4 6 7 9 10 12 15 17 19 19 20 21 22 22 22 23 23 24 LCS_GDT L 365 L 365 3 3 22 3 3 5 6 7 9 10 12 15 17 19 19 20 21 22 22 22 23 23 24 LCS_GDT Y 366 Y 366 3 3 22 3 3 4 5 6 6 10 12 13 15 18 19 20 21 22 22 22 23 23 24 LCS_GDT K 367 K 367 3 3 22 3 3 3 3 4 6 7 11 12 12 15 16 16 16 19 20 22 22 23 24 LCS_GDT S 368 S 368 3 3 18 0 3 3 3 3 3 7 9 9 9 11 12 15 16 16 17 18 18 19 21 LCS_AVERAGE LCS_A: 13.47 ( 5.45 7.35 27.60 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 5 6 6 7 9 10 12 15 17 19 19 20 21 22 22 22 23 23 24 GDT PERCENT_AT 3.80 6.33 7.59 7.59 8.86 11.39 12.66 15.19 18.99 21.52 24.05 24.05 25.32 26.58 27.85 27.85 27.85 29.11 29.11 30.38 GDT RMS_LOCAL 0.02 0.54 0.78 0.78 1.35 2.03 2.33 2.80 3.40 3.63 3.96 3.96 4.19 4.37 4.57 4.57 4.57 5.07 5.07 5.46 GDT RMS_ALL_AT 16.83 21.36 20.97 20.97 21.03 7.12 7.11 8.28 7.18 7.26 7.18 7.18 7.09 7.23 7.15 7.15 7.15 7.01 7.01 7.03 # Checking swapping # possible swapping detected: E 343 E 343 # possible swapping detected: E 346 E 346 # possible swapping detected: D 360 D 360 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA E 343 E 343 13.395 0 0.491 1.146 21.280 0.000 0.000 LGA Y 344 Y 344 10.304 0 0.597 1.168 22.003 7.857 2.619 LGA A 345 A 345 4.637 0 0.310 0.363 7.070 23.571 25.143 LGA E 346 E 346 5.658 0 0.190 0.937 10.748 26.429 14.656 LGA N 347 N 347 2.614 0 0.567 1.253 6.043 61.071 49.107 LGA K 348 K 348 1.276 0 0.655 0.913 2.736 75.476 76.931 LGA L 349 L 349 3.096 0 0.069 1.383 8.830 59.167 39.286 LGA I 350 I 350 0.580 0 0.219 1.136 4.396 77.381 67.143 LGA L 351 L 351 3.003 0 0.498 1.302 9.232 59.167 36.845 LGA K 352 K 352 2.546 0 0.057 1.205 3.858 52.143 59.577 LGA K 353 K 353 6.052 0 0.551 1.237 7.662 16.667 14.180 LGA Q 354 Q 354 7.223 0 0.583 1.177 10.741 13.690 6.667 LGA N 355 N 355 3.882 0 0.685 1.152 6.812 54.048 38.571 LGA P 356 P 356 2.332 0 0.659 0.566 4.087 57.857 52.585 LGA K 357 K 357 3.172 0 0.522 0.763 14.581 55.714 28.254 LGA L 358 L 358 2.312 0 0.254 0.434 8.880 70.952 42.024 LGA I 359 I 359 4.461 0 0.154 1.595 9.954 35.357 23.810 LGA D 360 D 360 6.543 0 0.171 1.214 11.788 23.095 12.143 LGA E 361 E 361 2.111 0 0.117 1.520 8.155 67.738 44.074 LGA L 362 L 362 5.187 0 0.050 1.271 9.688 27.619 16.071 LGA Y 363 Y 363 9.574 0 0.294 0.375 18.615 2.976 0.992 LGA D 364 D 364 8.983 0 0.432 0.375 11.098 2.024 1.131 LGA L 365 L 365 9.564 0 0.600 1.382 10.998 0.833 2.798 LGA Y 366 Y 366 12.465 0 0.603 0.725 16.913 0.000 0.000 LGA K 367 K 367 17.476 0 0.677 0.910 19.561 0.000 0.000 LGA S 368 S 368 21.583 0 0.636 0.759 24.105 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 26 104 104 100.00 223 223 100.00 79 SUMMARY(RMSD_GDC): 6.668 6.607 8.614 11.023 8.286 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 26 79 4.0 12 2.80 14.241 13.219 0.414 LGA_LOCAL RMSD: 2.801 Number of atoms: 12 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 8.279 Number of assigned atoms: 26 Std_ASGN_ATOMS RMSD: 6.668 Standard rmsd on all 26 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.737541 * X + 0.243694 * Y + -0.629799 * Z + -33.358059 Y_new = 0.629985 * X + 0.087594 * Y + 0.771652 * Z + 98.971115 Z_new = 0.243213 * X + -0.965889 * Y + -0.088919 * Z + -0.937254 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.706910 -0.245677 -1.662597 [DEG: 40.5030 -14.0763 -95.2598 ] ZXZ: -2.457069 1.659833 2.894918 [DEG: -140.7797 95.1014 165.8666 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0547TS117_1_1-D3 REMARK 2: T0547-D3.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0547TS117_1_1-D3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 26 79 4.0 12 2.80 13.219 6.67 REMARK ---------------------------------------------------------- MOLECULE T0547TS117_1_1-D3 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 1 REMARK PFRMAT TS REMARK TARGET T0547 REMARK PARENT N/A ATOM 2668 N GLU 343 -23.338 62.165 -3.991 1.00 0.00 N ATOM 2669 CA GLU 343 -23.258 61.844 -5.422 1.00 0.00 C ATOM 2670 C GLU 343 -24.245 62.536 -6.368 1.00 0.00 C ATOM 2671 O GLU 343 -23.871 63.079 -7.411 1.00 0.00 O ATOM 2672 CB GLU 343 -23.493 60.350 -5.651 1.00 0.00 C ATOM 2673 CG GLU 343 -23.341 59.912 -7.099 1.00 0.00 C ATOM 2674 CD GLU 343 -23.507 58.416 -7.275 1.00 0.00 C ATOM 2675 OE1 GLU 343 -23.743 57.721 -6.264 1.00 0.00 O ATOM 2676 OE2 GLU 343 -23.400 57.938 -8.424 1.00 0.00 O ATOM 2677 N TYR 344 -25.519 62.499 -5.973 1.00 0.00 N ATOM 2678 CA TYR 344 -26.608 63.053 -6.757 1.00 0.00 C ATOM 2679 C TYR 344 -27.023 64.449 -6.295 1.00 0.00 C ATOM 2680 O TYR 344 -27.426 65.278 -7.112 1.00 0.00 O ATOM 2681 CB TYR 344 -27.846 62.159 -6.661 1.00 0.00 C ATOM 2682 CG TYR 344 -27.633 60.758 -7.188 1.00 0.00 C ATOM 2683 CD1 TYR 344 -27.420 59.695 -6.320 1.00 0.00 C ATOM 2684 CD2 TYR 344 -27.645 60.504 -8.554 1.00 0.00 C ATOM 2685 CE1 TYR 344 -27.224 58.412 -6.794 1.00 0.00 C ATOM 2686 CE2 TYR 344 -27.451 59.227 -9.046 1.00 0.00 C ATOM 2687 CZ TYR 344 -27.240 58.178 -8.152 1.00 0.00 C ATOM 2688 OH TYR 344 -27.045 56.901 -8.626 1.00 0.00 H ATOM 2689 N ALA 345 -26.935 64.741 -4.991 1.00 0.00 N ATOM 2690 CA ALA 345 -27.702 65.831 -4.408 1.00 0.00 C ATOM 2691 C ALA 345 -27.140 66.520 -3.165 1.00 0.00 C ATOM 2692 O ALA 345 -27.299 66.097 -2.019 1.00 0.00 O ATOM 2693 CB ALA 345 -29.078 65.344 -3.983 1.00 0.00 C ATOM 2694 N GLU 346 -26.452 67.633 -3.420 1.00 0.00 N ATOM 2695 CA GLU 346 -26.849 68.971 -2.988 1.00 0.00 C ATOM 2696 C GLU 346 -27.290 69.379 -1.578 1.00 0.00 C ATOM 2697 O GLU 346 -27.354 70.588 -1.358 1.00 0.00 O ATOM 2698 CB GLU 346 -28.060 69.454 -3.787 1.00 0.00 C ATOM 2699 CG GLU 346 -27.780 69.679 -5.264 1.00 0.00 C ATOM 2700 CD GLU 346 -29.010 70.127 -6.029 1.00 0.00 C ATOM 2701 OE1 GLU 346 -30.087 70.246 -5.407 1.00 0.00 O ATOM 2702 OE2 GLU 346 -28.897 70.360 -7.251 1.00 0.00 O ATOM 2703 N ASN 347 -27.598 68.501 -0.615 1.00 0.00 N ATOM 2704 CA ASN 347 -28.394 68.823 0.579 1.00 0.00 C ATOM 2705 C ASN 347 -27.948 69.965 1.486 1.00 0.00 C ATOM 2706 O ASN 347 -26.865 69.949 2.062 1.00 0.00 O ATOM 2707 CB ASN 347 -28.462 67.617 1.519 1.00 0.00 C ATOM 2708 CG ASN 347 -29.345 67.869 2.726 1.00 0.00 C ATOM 2709 OD1 ASN 347 -30.175 68.778 2.721 1.00 0.00 O ATOM 2710 ND2 ASN 347 -29.167 67.063 3.766 1.00 0.00 N ATOM 2711 N LYS 348 -28.834 70.965 1.592 1.00 0.00 N ATOM 2712 CA LYS 348 -28.748 71.972 2.642 1.00 0.00 C ATOM 2713 C LYS 348 -29.889 71.705 3.612 1.00 0.00 C ATOM 2714 O LYS 348 -31.043 71.595 3.200 1.00 0.00 O ATOM 2715 CB LYS 348 -28.876 73.376 2.050 1.00 0.00 C ATOM 2716 CG LYS 348 -27.723 73.775 1.143 1.00 0.00 C ATOM 2717 CD LYS 348 -27.909 75.183 0.601 1.00 0.00 C ATOM 2718 CE LYS 348 -26.779 75.565 -0.343 1.00 0.00 C ATOM 2719 NZ LYS 348 -26.959 76.933 -0.900 1.00 0.00 N ATOM 2720 N LEU 349 -29.589 71.599 4.905 1.00 0.00 N ATOM 2721 CA LEU 349 -30.592 71.291 5.913 1.00 0.00 C ATOM 2722 C LEU 349 -31.025 72.513 6.715 1.00 0.00 C ATOM 2723 O LEU 349 -30.170 73.246 7.223 1.00 0.00 O ATOM 2724 CB LEU 349 -30.050 70.265 6.911 1.00 0.00 C ATOM 2725 CG LEU 349 -30.988 69.873 8.055 1.00 0.00 C ATOM 2726 CD1 LEU 349 -32.196 69.116 7.525 1.00 0.00 C ATOM 2727 CD2 LEU 349 -30.269 68.981 9.056 1.00 0.00 C ATOM 2728 N ILE 350 -32.335 72.755 6.843 1.00 0.00 N ATOM 2729 CA ILE 350 -32.862 73.854 7.646 1.00 0.00 C ATOM 2730 C ILE 350 -33.644 73.380 8.872 1.00 0.00 C ATOM 2731 O ILE 350 -34.082 72.230 8.937 1.00 0.00 O ATOM 2732 CB ILE 350 -33.822 74.739 6.830 1.00 0.00 C ATOM 2733 CG1 ILE 350 -35.015 73.917 6.336 1.00 0.00 C ATOM 2734 CG2 ILE 350 -33.109 75.327 5.622 1.00 0.00 C ATOM 2735 CD1 ILE 350 -36.106 74.748 5.697 1.00 0.00 C ATOM 2736 N LEU 351 -33.829 74.262 9.865 1.00 0.00 N ATOM 2737 CA LEU 351 -34.641 73.963 11.045 1.00 0.00 C ATOM 2738 C LEU 351 -36.157 74.056 10.819 1.00 0.00 C ATOM 2739 O LEU 351 -36.955 73.632 11.658 1.00 0.00 O ATOM 2740 CB LEU 351 -34.317 74.936 12.180 1.00 0.00 C ATOM 2741 CG LEU 351 -32.894 74.876 12.739 1.00 0.00 C ATOM 2742 CD1 LEU 351 -32.679 75.964 13.780 1.00 0.00 C ATOM 2743 CD2 LEU 351 -32.630 73.531 13.396 1.00 0.00 C ATOM 2744 N LYS 352 -36.597 74.612 9.685 1.00 0.00 N ATOM 2745 CA LYS 352 -38.012 74.690 9.336 1.00 0.00 C ATOM 2746 C LYS 352 -38.506 73.360 8.767 1.00 0.00 C ATOM 2747 O LYS 352 -37.712 72.570 8.251 1.00 0.00 O ATOM 2748 CB LYS 352 -38.246 75.777 8.285 1.00 0.00 C ATOM 2749 CG LYS 352 -37.806 77.165 8.719 1.00 0.00 C ATOM 2750 CD LYS 352 -38.674 77.692 9.849 1.00 0.00 C ATOM 2751 CE LYS 352 -40.065 78.052 9.355 1.00 0.00 C ATOM 2752 NZ LYS 352 -40.918 78.602 10.445 1.00 0.00 N ATOM 2753 N LYS 353 -39.809 73.073 8.843 1.00 0.00 N ATOM 2754 CA LYS 353 -40.308 71.721 8.628 1.00 0.00 C ATOM 2755 C LYS 353 -41.464 71.625 7.641 1.00 0.00 C ATOM 2756 O LYS 353 -41.930 72.625 7.092 1.00 0.00 O ATOM 2757 CB LYS 353 -40.814 71.121 9.942 1.00 0.00 C ATOM 2758 CG LYS 353 -39.758 71.036 11.031 1.00 0.00 C ATOM 2759 CD LYS 353 -38.734 69.954 10.725 1.00 0.00 C ATOM 2760 CE LYS 353 -37.790 69.739 11.897 1.00 0.00 C ATOM 2761 NZ LYS 353 -36.814 70.854 12.036 1.00 0.00 N ATOM 2762 N GLN 354 -41.937 70.393 7.413 1.00 0.00 N ATOM 2763 CA GLN 354 -43.308 70.127 6.976 1.00 0.00 C ATOM 2764 C GLN 354 -44.327 70.924 7.787 1.00 0.00 C ATOM 2765 O GLN 354 -45.211 71.587 7.244 1.00 0.00 O ATOM 2766 CB GLN 354 -43.643 68.643 7.138 1.00 0.00 C ATOM 2767 CG GLN 354 -45.038 68.267 6.664 1.00 0.00 C ATOM 2768 CD GLN 354 -45.326 66.786 6.820 1.00 0.00 C ATOM 2769 OE1 GLN 354 -44.511 66.039 7.361 1.00 0.00 O ATOM 2770 NE2 GLN 354 -46.490 66.358 6.344 1.00 0.00 N ATOM 2771 N ASN 355 -44.215 70.871 9.116 1.00 0.00 N ATOM 2772 CA ASN 355 -45.287 71.352 9.961 1.00 0.00 C ATOM 2773 C ASN 355 -45.684 72.813 10.094 1.00 0.00 C ATOM 2774 O ASN 355 -46.858 73.017 10.404 1.00 0.00 O ATOM 2775 CB ASN 355 -45.018 70.990 11.424 1.00 0.00 C ATOM 2776 CG ASN 355 -45.208 69.512 11.703 1.00 0.00 C ATOM 2777 OD1 ASN 355 -45.888 68.811 10.953 1.00 0.00 O ATOM 2778 ND2 ASN 355 -44.605 69.034 12.785 1.00 0.00 N ATOM 2779 N PRO 356 -44.877 73.869 9.904 1.00 0.00 N ATOM 2780 CA PRO 356 -45.382 75.232 9.788 1.00 0.00 C ATOM 2781 C PRO 356 -46.060 75.499 8.447 1.00 0.00 C ATOM 2782 O PRO 356 -46.785 76.485 8.322 1.00 0.00 O ATOM 2783 CB PRO 356 -44.135 76.104 9.947 1.00 0.00 C ATOM 2784 CG PRO 356 -43.008 75.223 9.523 1.00 0.00 C ATOM 2785 CD PRO 356 -43.378 73.834 9.959 1.00 0.00 C ATOM 2786 N LYS 357 -45.833 74.632 7.445 1.00 0.00 N ATOM 2787 CA LYS 357 -46.228 74.903 6.073 1.00 0.00 C ATOM 2788 C LYS 357 -46.117 73.659 5.186 1.00 0.00 C ATOM 2789 O LYS 357 -45.079 73.376 4.586 1.00 0.00 O ATOM 2790 CB LYS 357 -45.337 75.988 5.464 1.00 0.00 C ATOM 2791 CG LYS 357 -43.873 75.596 5.348 1.00 0.00 C ATOM 2792 CD LYS 357 -43.051 76.709 4.721 1.00 0.00 C ATOM 2793 CE LYS 357 -41.592 76.306 4.576 1.00 0.00 C ATOM 2794 NZ LYS 357 -40.778 77.381 3.947 1.00 0.00 N ATOM 2795 N LEU 358 -47.209 72.892 5.097 1.00 0.00 N ATOM 2796 CA LEU 358 -47.244 71.611 4.387 1.00 0.00 C ATOM 2797 C LEU 358 -47.333 71.710 2.857 1.00 0.00 C ATOM 2798 O LEU 358 -47.512 70.694 2.180 1.00 0.00 O ATOM 2799 CB LEU 358 -48.459 70.790 4.824 1.00 0.00 C ATOM 2800 CG LEU 358 -48.505 70.378 6.297 1.00 0.00 C ATOM 2801 CD1 LEU 358 -49.815 69.677 6.619 1.00 0.00 C ATOM 2802 CD2 LEU 358 -47.364 69.426 6.624 1.00 0.00 C ATOM 2803 N ILE 359 -47.212 72.916 2.283 1.00 0.00 N ATOM 2804 CA ILE 359 -47.443 73.185 0.861 1.00 0.00 C ATOM 2805 C ILE 359 -46.758 72.282 -0.167 1.00 0.00 C ATOM 2806 O ILE 359 -47.413 71.794 -1.091 1.00 0.00 O ATOM 2807 CB ILE 359 -46.977 74.600 0.471 1.00 0.00 C ATOM 2808 CG1 ILE 359 -47.816 75.656 1.195 1.00 0.00 C ATOM 2809 CG2 ILE 359 -47.122 74.814 -1.029 1.00 0.00 C ATOM 2810 CD1 ILE 359 -49.280 75.641 0.812 1.00 0.00 C ATOM 2811 N ASP 360 -45.448 72.039 -0.040 1.00 0.00 N ATOM 2812 CA ASP 360 -44.735 71.304 -1.073 1.00 0.00 C ATOM 2813 C ASP 360 -45.026 69.833 -0.800 1.00 0.00 C ATOM 2814 O ASP 360 -45.834 69.235 -1.518 1.00 0.00 O ATOM 2815 CB ASP 360 -43.234 71.589 -0.994 1.00 0.00 C ATOM 2816 CG ASP 360 -42.452 70.894 -2.092 1.00 0.00 C ATOM 2817 OD1 ASP 360 -43.070 70.152 -2.884 1.00 0.00 O ATOM 2818 OD2 ASP 360 -41.220 71.092 -2.159 1.00 0.00 O ATOM 2819 N GLU 361 -44.386 69.250 0.216 1.00 0.00 N ATOM 2820 CA GLU 361 -44.827 68.065 0.960 1.00 0.00 C ATOM 2821 C GLU 361 -46.083 67.292 0.548 1.00 0.00 C ATOM 2822 O GLU 361 -46.005 66.097 0.284 1.00 0.00 O ATOM 2823 CB GLU 361 -45.120 68.426 2.418 1.00 0.00 C ATOM 2824 CG GLU 361 -45.549 67.247 3.276 1.00 0.00 C ATOM 2825 CD GLU 361 -44.430 66.246 3.491 1.00 0.00 C ATOM 2826 OE1 GLU 361 -43.276 66.558 3.129 1.00 0.00 O ATOM 2827 OE2 GLU 361 -44.708 65.150 4.020 1.00 0.00 O ATOM 2828 N LEU 362 -47.237 67.969 0.492 1.00 0.00 N ATOM 2829 CA LEU 362 -48.502 67.378 0.075 1.00 0.00 C ATOM 2830 C LEU 362 -48.691 67.258 -1.442 1.00 0.00 C ATOM 2831 O LEU 362 -49.111 66.209 -1.933 1.00 0.00 O ATOM 2832 CB LEU 362 -49.677 68.215 0.584 1.00 0.00 C ATOM 2833 CG LEU 362 -49.872 68.260 2.101 1.00 0.00 C ATOM 2834 CD1 LEU 362 -50.971 69.242 2.474 1.00 0.00 C ATOM 2835 CD2 LEU 362 -50.257 66.889 2.634 1.00 0.00 C ATOM 2836 N TYR 363 -48.391 68.311 -2.214 1.00 0.00 N ATOM 2837 CA TYR 363 -48.789 68.395 -3.620 1.00 0.00 C ATOM 2838 C TYR 363 -47.639 68.613 -4.612 1.00 0.00 C ATOM 2839 O TYR 363 -47.846 68.665 -5.825 1.00 0.00 O ATOM 2840 CB TYR 363 -49.756 69.562 -3.833 1.00 0.00 C ATOM 2841 CG TYR 363 -51.027 69.461 -3.020 1.00 0.00 C ATOM 2842 CD1 TYR 363 -51.222 70.264 -1.904 1.00 0.00 C ATOM 2843 CD2 TYR 363 -52.027 68.562 -3.371 1.00 0.00 C ATOM 2844 CE1 TYR 363 -52.381 70.178 -1.154 1.00 0.00 C ATOM 2845 CE2 TYR 363 -53.192 68.464 -2.634 1.00 0.00 C ATOM 2846 CZ TYR 363 -53.362 69.281 -1.519 1.00 0.00 C ATOM 2847 OH TYR 363 -54.516 69.195 -0.774 1.00 0.00 H ATOM 2848 N ASP 364 -46.401 68.745 -4.125 1.00 0.00 N ATOM 2849 CA ASP 364 -45.251 69.230 -4.894 1.00 0.00 C ATOM 2850 C ASP 364 -45.488 70.596 -5.546 1.00 0.00 C ATOM 2851 O ASP 364 -45.131 70.873 -6.693 1.00 0.00 O ATOM 2852 CB ASP 364 -44.908 68.252 -6.019 1.00 0.00 C ATOM 2853 CG ASP 364 -44.472 66.896 -5.501 1.00 0.00 C ATOM 2854 OD1 ASP 364 -43.600 66.853 -4.608 1.00 0.00 O ATOM 2855 OD2 ASP 364 -45.003 65.875 -5.987 1.00 0.00 O ATOM 2856 N LEU 365 -46.120 71.477 -4.765 1.00 0.00 N ATOM 2857 CA LEU 365 -46.438 72.823 -5.217 1.00 0.00 C ATOM 2858 C LEU 365 -45.163 73.658 -5.175 1.00 0.00 C ATOM 2859 O LEU 365 -44.410 73.652 -4.197 1.00 0.00 O ATOM 2860 CB LEU 365 -47.495 73.456 -4.310 1.00 0.00 C ATOM 2861 CG LEU 365 -48.868 72.782 -4.296 1.00 0.00 C ATOM 2862 CD1 LEU 365 -49.777 73.436 -3.267 1.00 0.00 C ATOM 2863 CD2 LEU 365 -49.536 72.893 -5.658 1.00 0.00 C ATOM 2864 N TYR 366 -44.948 74.379 -6.276 1.00 0.00 N ATOM 2865 CA TYR 366 -43.742 75.160 -6.494 1.00 0.00 C ATOM 2866 C TYR 366 -43.740 76.412 -5.629 1.00 0.00 C ATOM 2867 O TYR 366 -44.704 77.183 -5.596 1.00 0.00 O ATOM 2868 CB TYR 366 -43.641 75.591 -7.959 1.00 0.00 C ATOM 2869 CG TYR 366 -42.415 76.420 -8.270 1.00 0.00 C ATOM 2870 CD1 TYR 366 -41.162 75.828 -8.364 1.00 0.00 C ATOM 2871 CD2 TYR 366 -42.515 77.791 -8.469 1.00 0.00 C ATOM 2872 CE1 TYR 366 -40.036 76.577 -8.648 1.00 0.00 C ATOM 2873 CE2 TYR 366 -41.401 78.556 -8.754 1.00 0.00 C ATOM 2874 CZ TYR 366 -40.155 77.936 -8.843 1.00 0.00 C ATOM 2875 OH TYR 366 -39.034 78.685 -9.125 1.00 0.00 H ATOM 2876 N LYS 367 -42.628 76.599 -4.926 1.00 0.00 N ATOM 2877 CA LYS 367 -42.478 77.666 -3.957 1.00 0.00 C ATOM 2878 C LYS 367 -41.162 78.361 -4.264 1.00 0.00 C ATOM 2879 O LYS 367 -40.168 77.702 -4.580 1.00 0.00 O ATOM 2880 CB LYS 367 -42.459 77.100 -2.536 1.00 0.00 C ATOM 2881 CG LYS 367 -43.785 76.510 -2.085 1.00 0.00 C ATOM 2882 CD LYS 367 -43.740 76.104 -0.620 1.00 0.00 C ATOM 2883 CE LYS 367 -42.790 74.937 -0.401 1.00 0.00 C ATOM 2884 NZ LYS 367 -42.863 74.418 0.993 1.00 0.00 N ATOM 2885 N SER 368 -41.131 79.693 -4.178 1.00 0.00 N ATOM 2886 CA SER 368 -39.904 80.424 -4.407 1.00 0.00 C ATOM 2887 C SER 368 -39.087 80.466 -3.125 1.00 0.00 C ATOM 2888 O SER 368 -39.610 80.607 -2.016 1.00 0.00 O ATOM 2889 CB SER 368 -40.209 81.857 -4.847 1.00 0.00 C ATOM 2890 OG SER 368 -39.018 82.612 -4.990 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 223 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 85.76 38.0 50 32.1 156 ARMSMC SECONDARY STRUCTURE . . 80.53 39.1 23 22.1 104 ARMSMC SURFACE . . . . . . . . 88.12 29.4 34 32.7 104 ARMSMC BURIED . . . . . . . . 80.52 56.2 16 30.8 52 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 84.44 40.0 25 34.2 73 ARMSSC1 RELIABLE SIDE CHAINS . 84.44 40.0 25 34.7 72 ARMSSC1 SECONDARY STRUCTURE . . 83.69 33.3 12 24.5 49 ARMSSC1 SURFACE . . . . . . . . 80.31 52.9 17 34.0 50 ARMSSC1 BURIED . . . . . . . . 92.61 12.5 8 34.8 23 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 84.15 41.7 24 37.5 64 ARMSSC2 RELIABLE SIDE CHAINS . 65.70 52.9 17 42.5 40 ARMSSC2 SECONDARY STRUCTURE . . 84.30 36.4 11 26.2 42 ARMSSC2 SURFACE . . . . . . . . 61.40 56.2 16 36.4 44 ARMSSC2 BURIED . . . . . . . . 117.06 12.5 8 40.0 20 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 56.50 55.6 9 52.9 17 ARMSSC3 RELIABLE SIDE CHAINS . 53.40 62.5 8 53.3 15 ARMSSC3 SECONDARY STRUCTURE . . 68.78 66.7 3 30.0 10 ARMSSC3 SURFACE . . . . . . . . 59.90 50.0 8 50.0 16 ARMSSC3 BURIED . . . . . . . . 4.75 100.0 1 100.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 5.56 100.0 5 55.6 9 ARMSSC4 RELIABLE SIDE CHAINS . 5.56 100.0 5 55.6 9 ARMSSC4 SECONDARY STRUCTURE . . 4.85 100.0 2 40.0 5 ARMSSC4 SURFACE . . . . . . . . 5.82 100.0 4 50.0 8 ARMSSC4 BURIED . . . . . . . . 4.38 100.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.67 (Number of atoms: 26) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.67 26 32.9 79 CRMSCA CRN = ALL/NP . . . . . 0.2564 CRMSCA SECONDARY STRUCTURE . . 7.47 12 23.1 52 CRMSCA SURFACE . . . . . . . . 6.99 18 34.0 53 CRMSCA BURIED . . . . . . . . 5.89 8 30.8 26 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.85 130 33.1 393 CRMSMC SECONDARY STRUCTURE . . 7.75 60 23.1 260 CRMSMC SURFACE . . . . . . . . 7.11 90 34.2 263 CRMSMC BURIED . . . . . . . . 6.22 40 30.8 130 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.12 119 36.3 328 CRMSSC RELIABLE SIDE CHAINS . 10.14 103 38.4 268 CRMSSC SECONDARY STRUCTURE . . 10.49 57 25.8 221 CRMSSC SURFACE . . . . . . . . 10.59 82 36.3 226 CRMSSC BURIED . . . . . . . . 8.99 37 36.3 102 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.66 223 34.6 644 CRMSALL SECONDARY STRUCTURE . . 9.25 105 24.5 429 CRMSALL SURFACE . . . . . . . . 9.05 154 35.2 438 CRMSALL BURIED . . . . . . . . 7.72 69 33.5 206 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.899 1.000 0.500 26 32.9 79 ERRCA SECONDARY STRUCTURE . . 6.484 1.000 0.500 12 23.1 52 ERRCA SURFACE . . . . . . . . 6.091 1.000 0.500 18 34.0 53 ERRCA BURIED . . . . . . . . 5.466 1.000 0.500 8 30.8 26 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.057 1.000 0.500 130 33.1 393 ERRMC SECONDARY STRUCTURE . . 6.805 1.000 0.500 60 23.1 260 ERRMC SURFACE . . . . . . . . 6.177 1.000 0.500 90 34.2 263 ERRMC BURIED . . . . . . . . 5.787 1.000 0.500 40 30.8 130 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.152 1.000 0.500 119 36.3 328 ERRSC RELIABLE SIDE CHAINS . 9.121 1.000 0.500 103 38.4 268 ERRSC SECONDARY STRUCTURE . . 9.962 1.000 0.500 57 25.8 221 ERRSC SURFACE . . . . . . . . 9.455 1.000 0.500 82 36.3 226 ERRSC BURIED . . . . . . . . 8.481 1.000 0.500 37 36.3 102 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.606 1.000 0.500 223 34.6 644 ERRALL SECONDARY STRUCTURE . . 8.399 1.000 0.500 105 24.5 429 ERRALL SURFACE . . . . . . . . 7.833 1.000 0.500 154 35.2 438 ERRALL BURIED . . . . . . . . 7.101 1.000 0.500 69 33.5 206 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 2 4 12 23 26 79 DISTCA CA (P) 0.00 2.53 5.06 15.19 29.11 79 DISTCA CA (RMS) 0.00 1.84 2.22 3.52 5.53 DISTCA ALL (N) 1 6 15 71 165 223 644 DISTALL ALL (P) 0.16 0.93 2.33 11.02 25.62 644 DISTALL ALL (RMS) 0.99 1.53 2.24 3.73 5.93 DISTALL END of the results output