####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 25 ( 217), selected 25 , name T0547TS001_1-D3 # Molecule2: number of CA atoms 79 ( 644), selected 25 , name T0547-D3.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0547TS001_1-D3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 344 - 365 4.92 6.41 LONGEST_CONTINUOUS_SEGMENT: 22 345 - 366 4.65 6.60 LCS_AVERAGE: 27.70 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 357 - 364 1.59 20.73 LCS_AVERAGE: 7.49 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 358 - 363 0.79 20.81 LCS_AVERAGE: 5.47 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 25 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT E 343 E 343 3 5 20 3 3 4 4 5 5 5 5 8 8 10 13 13 14 20 20 21 24 24 24 LCS_GDT Y 344 Y 344 4 5 22 3 4 4 4 5 5 6 8 11 12 16 17 18 20 22 22 23 24 24 24 LCS_GDT A 345 A 345 4 5 22 3 4 4 4 5 6 9 11 14 16 18 19 20 21 22 22 23 24 24 24 LCS_GDT E 346 E 346 4 5 22 3 4 4 4 5 5 8 10 14 16 18 19 20 21 22 22 23 24 24 24 LCS_GDT N 347 N 347 4 5 22 3 4 4 6 7 10 10 12 14 16 18 19 20 21 22 22 23 24 24 24 LCS_GDT K 348 K 348 5 5 22 3 4 5 6 7 10 10 12 14 16 18 19 20 21 22 22 23 24 24 24 LCS_GDT L 349 L 349 5 6 22 3 4 5 6 7 10 10 12 14 16 18 19 20 21 22 22 23 24 24 24 LCS_GDT I 350 I 350 5 6 22 3 4 5 6 7 10 10 12 15 16 18 19 20 21 22 22 23 24 24 24 LCS_GDT L 351 L 351 5 6 22 3 4 5 5 6 10 10 11 15 16 18 19 20 21 22 22 23 24 24 24 LCS_GDT K 352 K 352 5 6 22 3 4 5 5 6 10 10 11 15 16 18 19 20 21 22 22 23 24 24 24 LCS_GDT K 353 K 353 3 6 22 3 3 3 5 6 7 9 11 15 16 18 19 20 21 22 22 23 24 24 24 LCS_GDT Q 354 Q 354 3 6 22 0 3 3 5 6 7 8 11 15 16 18 19 20 21 22 22 23 24 24 24 LCS_GDT N 355 N 355 3 5 22 3 3 3 5 7 9 10 12 15 16 18 19 20 21 22 22 23 24 24 24 LCS_GDT P 356 P 356 3 4 22 3 4 4 6 7 10 10 12 15 16 18 19 20 21 22 22 23 24 24 24 LCS_GDT K 357 K 357 3 8 22 3 3 3 6 8 10 10 12 15 16 18 19 20 21 22 22 23 24 24 24 LCS_GDT L 358 L 358 6 8 22 4 5 6 7 8 10 10 12 15 16 18 19 20 21 22 22 23 24 24 24 LCS_GDT I 359 I 359 6 8 22 4 5 6 7 8 8 9 11 15 16 18 19 20 21 22 22 23 24 24 24 LCS_GDT D 360 D 360 6 8 22 4 5 6 7 8 8 10 12 15 16 18 19 20 21 22 22 23 24 24 24 LCS_GDT E 361 E 361 6 8 22 4 5 6 7 8 10 10 12 15 16 18 19 20 21 22 22 23 24 24 24 LCS_GDT L 362 L 362 6 8 22 4 5 6 7 8 8 9 10 10 13 17 19 20 21 22 22 23 24 24 24 LCS_GDT Y 363 Y 363 6 8 22 3 5 6 7 8 8 9 9 11 13 15 16 18 21 22 22 23 24 24 24 LCS_GDT D 364 D 364 4 8 22 3 4 5 7 8 9 10 12 15 16 18 19 20 21 22 22 23 24 24 24 LCS_GDT L 365 L 365 3 3 22 3 4 4 6 7 9 10 12 15 16 18 19 20 21 22 22 23 24 24 24 LCS_GDT Y 366 Y 366 3 3 22 1 3 4 5 5 9 9 11 15 15 17 18 19 21 22 22 23 24 24 24 LCS_GDT K 367 K 367 3 3 21 0 3 3 3 3 4 5 8 9 11 13 14 15 17 18 18 18 22 22 23 LCS_AVERAGE LCS_A: 13.55 ( 5.47 7.49 27.70 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 6 7 8 10 10 12 15 16 18 19 20 21 22 22 23 24 24 24 GDT PERCENT_AT 5.06 6.33 7.59 8.86 10.13 12.66 12.66 15.19 18.99 20.25 22.78 24.05 25.32 26.58 27.85 27.85 29.11 30.38 30.38 30.38 GDT RMS_LOCAL 0.24 0.49 0.79 1.27 1.59 2.40 2.33 2.84 3.55 3.64 3.94 4.06 4.27 4.47 4.65 4.65 5.16 5.55 5.55 5.55 GDT RMS_ALL_AT 20.71 20.13 20.81 20.90 20.73 7.57 6.91 7.04 9.97 6.85 6.56 6.60 6.61 6.59 6.60 6.60 6.31 6.26 6.26 6.26 # Checking swapping # possible swapping detected: E 343 E 343 # possible swapping detected: E 346 E 346 # possible swapping detected: D 360 D 360 # possible swapping detected: E 361 E 361 # possible swapping detected: Y 363 Y 363 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA E 343 E 343 17.762 0 0.455 0.856 24.515 0.000 0.000 LGA Y 344 Y 344 15.212 0 0.616 1.198 27.459 0.000 0.000 LGA A 345 A 345 7.765 0 0.065 0.064 10.657 6.905 7.524 LGA E 346 E 346 5.156 0 0.630 0.863 10.893 34.881 18.466 LGA N 347 N 347 1.186 0 0.634 1.143 7.559 79.286 52.143 LGA K 348 K 348 0.986 0 0.661 1.416 6.421 79.524 67.672 LGA L 349 L 349 2.765 0 0.094 0.178 8.654 57.500 35.714 LGA I 350 I 350 3.159 0 0.245 1.101 6.037 55.833 42.798 LGA L 351 L 351 7.457 0 0.429 1.270 12.900 11.071 5.595 LGA K 352 K 352 6.762 0 0.085 0.846 9.951 14.286 9.524 LGA K 353 K 353 7.138 0 0.581 0.970 8.009 9.524 22.857 LGA Q 354 Q 354 5.902 0 0.610 0.912 11.413 24.286 13.175 LGA N 355 N 355 2.442 0 0.650 0.977 5.898 65.119 47.738 LGA P 356 P 356 1.708 0 0.639 0.735 4.039 66.310 66.803 LGA K 357 K 357 3.240 0 0.600 1.094 11.549 57.500 30.159 LGA L 358 L 358 3.620 0 0.190 0.362 9.104 49.881 29.226 LGA I 359 I 359 5.320 0 0.158 1.477 10.865 31.786 17.857 LGA D 360 D 360 4.045 0 0.038 1.104 9.515 52.500 31.071 LGA E 361 E 361 4.183 0 0.054 1.160 11.679 35.476 18.677 LGA L 362 L 362 7.969 0 0.075 1.245 12.688 9.286 4.702 LGA Y 363 Y 363 7.740 0 0.318 0.515 17.128 13.810 4.722 LGA D 364 D 364 1.891 0 0.425 0.354 5.406 61.190 52.679 LGA L 365 L 365 2.569 0 0.588 1.411 4.606 52.619 46.548 LGA Y 366 Y 366 5.421 0 0.602 0.998 9.696 15.714 9.603 LGA K 367 K 367 11.795 0 0.686 0.882 15.576 0.714 0.317 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 25 100 100 100.00 217 217 100.00 79 SUMMARY(RMSD_GDC): 6.172 6.077 8.422 11.203 8.045 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 25 79 4.0 12 2.84 14.557 13.432 0.409 LGA_LOCAL RMSD: 2.836 Number of atoms: 12 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 7.036 Number of assigned atoms: 25 Std_ASGN_ATOMS RMSD: 6.172 Standard rmsd on all 25 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.795440 * X + -0.419430 * Y + -0.437440 * Z + -50.330040 Y_new = 0.596977 * X + 0.417982 * Y + 0.684770 * Z + 21.937542 Z_new = -0.104371 * X + -0.805835 * Y + 0.582870 * Z + 4.963885 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.643821 0.104561 -0.944596 [DEG: 36.8882 5.9909 -54.1214 ] ZXZ: -2.573122 0.948541 -3.012791 [DEG: -147.4290 54.3474 -172.6202 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0547TS001_1-D3 REMARK 2: T0547-D3.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0547TS001_1-D3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 25 79 4.0 12 2.84 13.432 6.17 REMARK ---------------------------------------------------------- MOLECULE T0547TS001_1-D3 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0547 REMARK MODEL 1 REMARK PARENT N/A ATOM 2571 N GLU 343 -22.762 60.922 4.429 1.00 3.28 N ATOM 2572 CA GLU 343 -22.489 59.882 3.424 1.00 3.28 C ATOM 2573 C GLU 343 -23.683 59.632 2.443 1.00 3.28 C ATOM 2574 O GLU 343 -23.473 59.416 1.255 1.00 3.28 O ATOM 2575 CB GLU 343 -22.152 58.632 4.286 1.00 3.28 C ATOM 2576 CG GLU 343 -20.807 58.732 5.008 1.00 3.28 C ATOM 2577 CD GLU 343 -20.663 57.512 5.906 1.00 3.28 C ATOM 2578 OE1 GLU 343 -21.633 56.710 5.975 1.00 3.28 O ATOM 2579 OE2 GLU 343 -19.581 57.366 6.537 1.00 3.28 O ATOM 2580 N TYR 344 -24.932 59.666 2.914 1.00 3.06 N ATOM 2581 CA TYR 344 -26.051 59.415 2.008 1.00 3.06 C ATOM 2582 C TYR 344 -26.513 60.588 1.114 1.00 3.06 C ATOM 2583 O TYR 344 -26.993 60.389 -0.032 1.00 3.06 O ATOM 2584 CB TYR 344 -27.294 58.947 2.809 1.00 3.06 C ATOM 2585 CG TYR 344 -27.025 57.560 3.282 1.00 3.06 C ATOM 2586 CD1 TYR 344 -26.665 57.337 4.618 1.00 3.06 C ATOM 2587 CD2 TYR 344 -27.130 56.449 2.417 1.00 3.06 C ATOM 2588 CE1 TYR 344 -26.406 56.040 5.104 1.00 3.06 C ATOM 2589 CE2 TYR 344 -26.869 55.124 2.894 1.00 3.06 C ATOM 2590 CZ TYR 344 -26.508 54.941 4.245 1.00 3.06 C ATOM 2591 OH TYR 344 -26.245 53.686 4.748 1.00 3.06 H ATOM 2592 N ALA 345 -26.345 61.808 1.612 1.00 3.15 N ATOM 2593 CA ALA 345 -26.856 62.963 0.883 1.00 3.15 C ATOM 2594 C ALA 345 -26.304 64.300 1.353 1.00 3.15 C ATOM 2595 O ALA 345 -25.810 64.422 2.483 1.00 3.15 O ATOM 2596 CB ALA 345 -28.367 63.080 1.088 1.00 3.15 C ATOM 2597 N GLU 346 -26.377 65.300 0.487 1.00 2.90 N ATOM 2598 CA GLU 346 -25.962 66.617 0.905 1.00 2.90 C ATOM 2599 C GLU 346 -27.263 67.382 1.206 1.00 2.90 C ATOM 2600 O GLU 346 -28.109 67.585 0.320 1.00 2.90 O ATOM 2601 CB GLU 346 -25.178 67.337 -0.172 1.00 2.90 C ATOM 2602 CG GLU 346 -23.809 66.713 -0.448 1.00 2.90 C ATOM 2603 CD GLU 346 -23.134 67.527 -1.545 1.00 2.90 C ATOM 2604 OE1 GLU 346 -23.746 68.532 -1.996 1.00 2.90 O ATOM 2605 OE2 GLU 346 -21.999 67.154 -1.945 1.00 2.90 O ATOM 2606 N ASN 347 -27.383 67.788 2.468 1.00 2.37 N ATOM 2607 CA ASN 347 -28.540 68.498 2.988 1.00 2.37 C ATOM 2608 C ASN 347 -28.369 70.012 3.023 1.00 2.37 C ATOM 2609 O ASN 347 -27.315 70.527 3.407 1.00 2.37 O ATOM 2610 CB ASN 347 -28.859 68.055 4.446 1.00 2.37 C ATOM 2611 CG ASN 347 -29.338 66.610 4.403 1.00 2.37 C ATOM 2612 OD1 ASN 347 -29.875 66.151 3.396 1.00 2.37 O ATOM 2613 ND2 ASN 347 -29.171 65.817 5.495 1.00 2.37 N ATOM 2614 N LYS 348 -29.428 70.723 2.639 1.00 2.35 N ATOM 2615 CA LYS 348 -29.420 72.167 2.732 1.00 2.35 C ATOM 2616 C LYS 348 -30.582 72.451 3.693 1.00 2.35 C ATOM 2617 O LYS 348 -31.731 72.036 3.451 1.00 2.35 O ATOM 2618 CB LYS 348 -29.605 72.919 1.335 1.00 2.35 C ATOM 2619 CG LYS 348 -28.475 72.647 0.340 1.00 2.35 C ATOM 2620 CD LYS 348 -28.736 73.216 -1.055 1.00 2.35 C ATOM 2621 CE LYS 348 -29.808 72.453 -1.838 1.00 2.35 C ATOM 2622 NZ LYS 348 -29.302 71.114 -2.213 1.00 2.35 N ATOM 2623 N LEU 349 -30.256 73.135 4.784 1.00 2.65 N ATOM 2624 CA LEU 349 -31.230 73.413 5.858 1.00 2.65 C ATOM 2625 C LEU 349 -31.725 74.841 5.719 1.00 2.65 C ATOM 2626 O LEU 349 -30.917 75.758 5.782 1.00 2.65 O ATOM 2627 CB LEU 349 -30.552 73.282 7.232 1.00 2.65 C ATOM 2628 CG LEU 349 -29.985 71.887 7.501 1.00 2.65 C ATOM 2629 CD1 LEU 349 -29.248 71.734 8.832 1.00 2.65 C ATOM 2630 CD2 LEU 349 -31.022 70.764 7.541 1.00 2.65 C ATOM 2631 N ILE 350 -33.030 75.013 5.602 1.00 2.65 N ATOM 2632 CA ILE 350 -33.621 76.332 5.426 1.00 2.65 C ATOM 2633 C ILE 350 -34.532 76.700 6.568 1.00 2.65 C ATOM 2634 O ILE 350 -34.916 75.825 7.365 1.00 2.65 O ATOM 2635 CB ILE 350 -34.418 76.471 4.036 1.00 2.65 C ATOM 2636 CG1 ILE 350 -35.568 75.465 3.924 1.00 2.65 C ATOM 2637 CG2 ILE 350 -33.409 76.291 2.865 1.00 2.65 C ATOM 2638 CD1 ILE 350 -36.458 75.600 2.605 1.00 2.65 C ATOM 2639 N LEU 351 -34.868 77.986 6.686 1.00 2.69 N ATOM 2640 CA LEU 351 -35.713 78.402 7.810 1.00 2.69 C ATOM 2641 C LEU 351 -37.206 78.277 7.591 1.00 2.69 C ATOM 2642 O LEU 351 -37.974 78.705 8.455 1.00 2.69 O ATOM 2643 CB LEU 351 -35.367 79.829 8.299 1.00 2.69 C ATOM 2644 CG LEU 351 -33.939 79.962 8.834 1.00 2.69 C ATOM 2645 CD1 LEU 351 -33.529 81.378 9.235 1.00 2.69 C ATOM 2646 CD2 LEU 351 -33.639 79.137 10.085 1.00 2.69 C ATOM 2647 N LYS 352 -37.612 77.713 6.447 1.00 2.81 N ATOM 2648 CA LYS 352 -39.028 77.387 6.214 1.00 2.81 C ATOM 2649 C LYS 352 -39.124 75.960 6.776 1.00 2.81 C ATOM 2650 O LYS 352 -38.145 75.184 6.691 1.00 2.81 O ATOM 2651 CB LYS 352 -39.338 77.351 4.747 1.00 2.81 C ATOM 2652 CG LYS 352 -38.637 76.213 4.003 1.00 2.81 C ATOM 2653 CD LYS 352 -38.893 76.218 2.495 1.00 2.81 C ATOM 2654 CE LYS 352 -38.169 75.097 1.747 1.00 2.81 C ATOM 2655 NZ LYS 352 -38.421 75.212 0.293 1.00 2.81 N ATOM 2656 N LYS 353 -40.279 75.588 7.322 1.00 3.05 N ATOM 2657 CA LYS 353 -40.424 74.258 7.853 1.00 3.05 C ATOM 2658 C LYS 353 -41.812 73.700 7.586 1.00 3.05 C ATOM 2659 O LYS 353 -42.707 74.408 7.078 1.00 3.05 O ATOM 2660 CB LYS 353 -40.141 74.253 9.358 1.00 3.05 C ATOM 2661 CG LYS 353 -38.763 74.808 9.722 1.00 3.05 C ATOM 2662 CD LYS 353 -38.415 74.662 11.205 1.00 3.05 C ATOM 2663 CE LYS 353 -39.033 75.747 12.088 1.00 3.05 C ATOM 2664 NZ LYS 353 -38.431 77.061 11.774 1.00 3.05 N ATOM 2665 N GLN 354 -42.014 72.435 7.962 1.00 3.08 N ATOM 2666 CA GLN 354 -43.308 71.809 7.739 1.00 3.08 C ATOM 2667 C GLN 354 -44.432 72.562 8.443 1.00 3.08 C ATOM 2668 O GLN 354 -45.581 72.506 7.968 1.00 3.08 O ATOM 2669 CB GLN 354 -43.292 70.341 8.176 1.00 3.08 C ATOM 2670 CG GLN 354 -42.387 69.457 7.315 1.00 3.08 C ATOM 2671 CD GLN 354 -42.919 69.488 5.890 1.00 3.08 C ATOM 2672 OE1 GLN 354 -44.123 69.393 5.661 1.00 3.08 O ATOM 2673 NE2 GLN 354 -42.049 69.621 4.853 1.00 3.08 N ATOM 2674 N ASN 355 -44.156 73.242 9.570 1.00 3.15 N ATOM 2675 CA ASN 355 -45.257 73.993 10.238 1.00 3.15 C ATOM 2676 C ASN 355 -45.662 75.179 9.336 1.00 3.15 C ATOM 2677 O ASN 355 -46.758 75.701 9.457 1.00 3.15 O ATOM 2678 CB ASN 355 -44.821 74.556 11.582 1.00 3.15 C ATOM 2679 CG ASN 355 -43.788 75.665 11.422 1.00 3.15 C ATOM 2680 OD1 ASN 355 -42.716 75.457 10.851 1.00 3.15 O ATOM 2681 ND2 ASN 355 -44.127 76.859 11.909 1.00 3.15 N ATOM 2682 N PRO 356 -44.751 75.653 8.474 1.00 3.35 N ATOM 2683 CA PRO 356 -45.124 76.725 7.551 1.00 3.35 C ATOM 2684 C PRO 356 -45.914 76.211 6.349 1.00 3.35 C ATOM 2685 O PRO 356 -46.742 76.936 5.751 1.00 3.35 O ATOM 2686 CB PRO 356 -43.854 77.393 6.978 1.00 3.35 C ATOM 2687 CG PRO 356 -42.595 77.121 7.805 1.00 3.35 C ATOM 2688 CD PRO 356 -42.588 75.745 8.473 1.00 3.35 C ATOM 2689 N LYS 357 -45.595 74.985 5.932 1.00 3.45 N ATOM 2690 CA LYS 357 -46.187 74.414 4.736 1.00 3.45 C ATOM 2691 C LYS 357 -46.057 72.912 4.892 1.00 3.45 C ATOM 2692 O LYS 357 -44.969 72.340 4.780 1.00 3.45 O ATOM 2693 CB LYS 357 -45.442 74.962 3.498 1.00 3.45 C ATOM 2694 CG LYS 357 -46.020 74.468 2.171 1.00 3.45 C ATOM 2695 CD LYS 357 -45.440 75.181 0.947 1.00 3.45 C ATOM 2696 CE LYS 357 -43.942 74.938 0.750 1.00 3.45 C ATOM 2697 NZ LYS 357 -43.700 73.519 0.409 1.00 3.45 N ATOM 2698 N LEU 358 -47.210 72.297 5.129 1.00 3.11 N ATOM 2699 CA LEU 358 -47.315 70.877 5.499 1.00 3.11 C ATOM 2700 C LEU 358 -47.401 69.788 4.417 1.00 3.11 C ATOM 2701 O LEU 358 -47.294 68.592 4.756 1.00 3.11 O ATOM 2702 CB LEU 358 -48.561 70.722 6.400 1.00 3.11 C ATOM 2703 CG LEU 358 -48.461 71.497 7.715 1.00 3.11 C ATOM 2704 CD1 LEU 358 -49.714 71.448 8.589 1.00 3.11 C ATOM 2705 CD2 LEU 358 -47.354 71.031 8.658 1.00 3.11 C ATOM 2706 N ILE 359 -47.573 70.192 3.155 1.00 2.86 N ATOM 2707 CA ILE 359 -47.801 69.213 2.115 1.00 2.86 C ATOM 2708 C ILE 359 -46.733 68.137 1.947 1.00 2.86 C ATOM 2709 O ILE 359 -47.074 66.957 1.911 1.00 2.86 O ATOM 2710 CB ILE 359 -48.156 69.906 0.772 1.00 2.86 C ATOM 2711 CG1 ILE 359 -49.516 70.625 0.793 1.00 2.86 C ATOM 2712 CG2 ILE 359 -48.232 68.935 -0.418 1.00 2.86 C ATOM 2713 CD1 ILE 359 -49.746 71.529 -0.417 1.00 2.86 C ATOM 2714 N ASP 360 -45.454 68.500 1.826 1.00 3.05 N ATOM 2715 CA ASP 360 -44.411 67.464 1.681 1.00 3.05 C ATOM 2716 C ASP 360 -44.437 66.522 2.899 1.00 3.05 C ATOM 2717 O ASP 360 -44.471 65.290 2.739 1.00 3.05 O ATOM 2718 CB ASP 360 -43.109 68.277 1.611 1.00 3.05 C ATOM 2719 CG ASP 360 -43.059 68.970 0.257 1.00 3.05 C ATOM 2720 OD1 ASP 360 -43.880 68.602 -0.626 1.00 3.05 O ATOM 2721 OD2 ASP 360 -42.199 69.874 0.087 1.00 3.05 O ATOM 2722 N GLU 361 -44.484 67.081 4.120 1.00 2.96 N ATOM 2723 CA GLU 361 -44.494 66.232 5.325 1.00 2.96 C ATOM 2724 C GLU 361 -45.716 65.325 5.456 1.00 2.96 C ATOM 2725 O GLU 361 -45.581 64.143 5.790 1.00 2.96 O ATOM 2726 CB GLU 361 -44.344 67.098 6.611 1.00 2.96 C ATOM 2727 CG GLU 361 -44.310 66.275 7.900 1.00 2.96 C ATOM 2728 CD GLU 361 -44.057 67.227 9.061 1.00 2.96 C ATOM 2729 OE1 GLU 361 -44.846 68.198 9.212 1.00 2.96 O ATOM 2730 OE2 GLU 361 -43.071 66.997 9.810 1.00 2.96 O ATOM 2731 N LEU 362 -46.903 65.841 5.175 1.00 3.13 N ATOM 2732 CA LEU 362 -48.110 65.035 5.300 1.00 3.13 C ATOM 2733 C LEU 362 -48.422 64.048 4.202 1.00 3.13 C ATOM 2734 O LEU 362 -48.944 62.970 4.467 1.00 3.13 O ATOM 2735 CB LEU 362 -49.365 65.889 5.353 1.00 3.13 C ATOM 2736 CG LEU 362 -49.454 66.763 6.606 1.00 3.13 C ATOM 2737 CD1 LEU 362 -50.638 67.729 6.634 1.00 3.13 C ATOM 2738 CD2 LEU 362 -49.590 65.997 7.920 1.00 3.13 C ATOM 2739 N TYR 363 -48.183 64.448 2.959 1.00 3.23 N ATOM 2740 CA TYR 363 -48.573 63.617 1.831 1.00 3.23 C ATOM 2741 C TYR 363 -47.407 63.212 0.993 1.00 3.23 C ATOM 2742 O TYR 363 -47.596 62.595 -0.039 1.00 3.23 O ATOM 2743 CB TYR 363 -49.538 64.389 0.920 1.00 3.23 C ATOM 2744 CG TYR 363 -50.701 65.090 1.622 1.00 3.23 C ATOM 2745 CD1 TYR 363 -51.795 64.379 2.088 1.00 3.23 C ATOM 2746 CD2 TYR 363 -50.677 66.460 1.853 1.00 3.23 C ATOM 2747 CE1 TYR 363 -52.850 65.030 2.782 1.00 3.23 C ATOM 2748 CE2 TYR 363 -51.713 67.120 2.544 1.00 3.23 C ATOM 2749 CZ TYR 363 -52.796 66.396 3.006 1.00 3.23 C ATOM 2750 OH TYR 363 -53.824 67.039 3.685 1.00 3.23 H ATOM 2751 N ASP 364 -46.206 63.556 1.428 1.00 3.90 N ATOM 2752 CA ASP 364 -45.023 63.302 0.605 1.00 3.90 C ATOM 2753 C ASP 364 -45.290 63.910 -0.793 1.00 3.90 C ATOM 2754 O ASP 364 -44.927 63.323 -1.825 1.00 3.90 O ATOM 2755 CB ASP 364 -44.763 61.802 0.450 1.00 3.90 C ATOM 2756 CG ASP 364 -44.455 61.233 1.828 1.00 3.90 C ATOM 2757 OD1 ASP 364 -43.599 61.828 2.536 1.00 3.90 O ATOM 2758 OD2 ASP 364 -45.073 60.197 2.191 1.00 3.90 O ATOM 2759 N LEU 365 -45.946 65.063 -0.827 1.00 3.82 N ATOM 2760 CA LEU 365 -46.280 65.732 -2.104 1.00 3.82 C ATOM 2761 C LEU 365 -45.063 66.458 -2.689 1.00 3.82 C ATOM 2762 O LEU 365 -44.205 67.003 -1.959 1.00 3.82 O ATOM 2763 CB LEU 365 -47.444 66.737 -1.878 1.00 3.82 C ATOM 2764 CG LEU 365 -48.743 66.073 -1.416 1.00 3.82 C ATOM 2765 CD1 LEU 365 -49.880 67.039 -1.088 1.00 3.82 C ATOM 2766 CD2 LEU 365 -49.371 65.113 -2.423 1.00 3.82 C ATOM 2767 N TYR 366 -45.003 66.504 -4.025 1.00 3.64 N ATOM 2768 CA TYR 366 -43.894 67.143 -4.709 1.00 3.64 C ATOM 2769 C TYR 366 -44.183 68.644 -5.028 1.00 3.64 C ATOM 2770 O TYR 366 -45.252 68.980 -5.536 1.00 3.64 O ATOM 2771 CB TYR 366 -43.597 66.367 -6.018 1.00 3.64 C ATOM 2772 CG TYR 366 -42.502 66.953 -6.893 1.00 3.64 C ATOM 2773 CD1 TYR 366 -42.740 68.031 -7.727 1.00 3.64 C ATOM 2774 CD2 TYR 366 -41.219 66.443 -6.840 1.00 3.64 C ATOM 2775 CE1 TYR 366 -41.713 68.585 -8.463 1.00 3.64 C ATOM 2776 CE2 TYR 366 -40.196 66.986 -7.574 1.00 3.64 C ATOM 2777 CZ TYR 366 -40.436 68.041 -8.358 1.00 3.64 C ATOM 2778 OH TYR 366 -39.358 68.617 -8.952 1.00 3.64 H ATOM 2779 N LYS 367 -43.218 69.507 -4.715 1.00 2.90 N ATOM 2780 CA LYS 367 -43.298 70.941 -5.044 1.00 2.90 C ATOM 2781 C LYS 367 -41.971 71.232 -5.740 1.00 2.90 C ATOM 2782 O LYS 367 -40.931 70.755 -5.313 1.00 2.90 O ATOM 2783 CB LYS 367 -43.390 71.846 -3.791 1.00 2.90 C ATOM 2784 CG LYS 367 -44.657 71.616 -2.964 1.00 2.90 C ATOM 2785 CD LYS 367 -44.782 72.553 -1.762 1.00 2.90 C ATOM 2786 CE LYS 367 -43.761 72.273 -0.658 1.00 2.90 C ATOM 2787 NZ LYS 367 -43.911 73.263 0.433 1.00 2.90 N TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 217 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 86.05 37.5 48 30.8 156 ARMSMC SECONDARY STRUCTURE . . 75.19 47.6 21 20.2 104 ARMSMC SURFACE . . . . . . . . 88.91 28.1 32 30.8 104 ARMSMC BURIED . . . . . . . . 80.02 56.2 16 30.8 52 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 83.27 33.3 24 32.9 73 ARMSSC1 RELIABLE SIDE CHAINS . 83.27 33.3 24 33.3 72 ARMSSC1 SECONDARY STRUCTURE . . 81.31 27.3 11 22.4 49 ARMSSC1 SURFACE . . . . . . . . 86.63 37.5 16 32.0 50 ARMSSC1 BURIED . . . . . . . . 76.09 25.0 8 34.8 23 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 72.00 58.3 24 37.5 64 ARMSSC2 RELIABLE SIDE CHAINS . 55.59 64.7 17 42.5 40 ARMSSC2 SECONDARY STRUCTURE . . 67.06 63.6 11 26.2 42 ARMSSC2 SURFACE . . . . . . . . 64.64 62.5 16 36.4 44 ARMSSC2 BURIED . . . . . . . . 84.82 50.0 8 40.0 20 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 86.64 22.2 9 52.9 17 ARMSSC3 RELIABLE SIDE CHAINS . 91.33 12.5 8 53.3 15 ARMSSC3 SECONDARY STRUCTURE . . 85.08 33.3 3 30.0 10 ARMSSC3 SURFACE . . . . . . . . 82.52 25.0 8 50.0 16 ARMSSC3 BURIED . . . . . . . . 114.32 0.0 1 100.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 68.43 60.0 5 55.6 9 ARMSSC4 RELIABLE SIDE CHAINS . 68.43 60.0 5 55.6 9 ARMSSC4 SECONDARY STRUCTURE . . 76.81 50.0 2 40.0 5 ARMSSC4 SURFACE . . . . . . . . 76.49 50.0 4 50.0 8 ARMSSC4 BURIED . . . . . . . . 3.18 100.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.17 (Number of atoms: 25) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.17 25 31.6 79 CRMSCA CRN = ALL/NP . . . . . 0.2469 CRMSCA SECONDARY STRUCTURE . . 6.68 11 21.2 52 CRMSCA SURFACE . . . . . . . . 6.37 17 32.1 53 CRMSCA BURIED . . . . . . . . 5.72 8 30.8 26 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.37 125 31.8 393 CRMSMC SECONDARY STRUCTURE . . 7.02 55 21.2 260 CRMSMC SURFACE . . . . . . . . 6.48 85 32.3 263 CRMSMC BURIED . . . . . . . . 6.12 40 30.8 130 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.06 117 35.7 328 CRMSSC RELIABLE SIDE CHAINS . 10.17 101 37.7 268 CRMSSC SECONDARY STRUCTURE . . 10.30 55 24.9 221 CRMSSC SURFACE . . . . . . . . 10.54 80 35.4 226 CRMSSC BURIED . . . . . . . . 8.93 37 36.3 102 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.46 217 33.7 644 CRMSALL SECONDARY STRUCTURE . . 8.91 99 23.1 429 CRMSALL SURFACE . . . . . . . . 8.81 148 33.8 438 CRMSALL BURIED . . . . . . . . 7.66 69 33.5 206 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.773 0.279 0.146 25 31.6 79 ERRCA SECONDARY STRUCTURE . . 3.211 0.304 0.167 11 21.2 52 ERRCA SURFACE . . . . . . . . 2.890 0.280 0.149 17 32.1 53 ERRCA BURIED . . . . . . . . 2.524 0.275 0.139 8 30.8 26 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.831 0.277 0.148 125 31.8 393 ERRMC SECONDARY STRUCTURE . . 3.254 0.289 0.157 55 21.2 260 ERRMC SURFACE . . . . . . . . 2.866 0.273 0.147 85 32.3 263 ERRMC BURIED . . . . . . . . 2.755 0.285 0.151 40 30.8 130 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.059 0.435 0.221 117 35.7 328 ERRSC RELIABLE SIDE CHAINS . 6.144 0.439 0.223 101 37.7 268 ERRSC SECONDARY STRUCTURE . . 6.450 0.453 0.226 55 24.9 221 ERRSC SURFACE . . . . . . . . 6.445 0.446 0.227 80 35.4 226 ERRSC BURIED . . . . . . . . 5.224 0.413 0.207 37 36.3 102 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.455 0.354 0.183 217 33.7 644 ERRALL SECONDARY STRUCTURE . . 4.932 0.374 0.194 99 23.1 429 ERRALL SURFACE . . . . . . . . 4.680 0.358 0.185 148 33.8 438 ERRALL BURIED . . . . . . . . 3.973 0.347 0.179 69 33.5 206 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 3 13 23 25 79 DISTCA CA (P) 0.00 0.00 3.80 16.46 29.11 79 DISTCA CA (RMS) 0.00 0.00 2.60 3.74 5.33 DISTCA ALL (N) 0 3 12 79 162 217 644 DISTALL ALL (P) 0.00 0.47 1.86 12.27 25.16 644 DISTALL ALL (RMS) 0.00 1.48 2.35 3.87 5.77 DISTALL END of the results output