####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 45 ( 345), selected 45 , name T0543TS490_1-D2 # Molecule2: number of CA atoms 45 ( 345), selected 45 , name T0543-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS490_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 45 96 - 140 2.39 2.39 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 43 97 - 139 1.89 2.43 LCS_AVERAGE: 93.63 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 26 114 - 139 0.98 2.51 LCS_AVERAGE: 44.00 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 45 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT T 96 T 96 3 5 45 3 3 9 18 22 28 35 38 40 42 43 44 44 44 45 45 45 45 45 45 LCS_GDT A 97 A 97 4 43 45 3 3 4 6 8 16 27 36 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT R 98 R 98 4 43 45 3 3 4 5 11 18 25 39 41 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT G 99 G 99 14 43 45 7 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT W 100 W 100 14 43 45 11 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT E 101 E 101 14 43 45 15 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT C 102 C 102 14 43 45 16 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT T 103 T 103 14 43 45 6 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT K 104 K 104 14 43 45 7 20 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT D 105 D 105 14 43 45 6 20 33 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT R 106 R 106 14 43 45 16 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT C 107 C 107 14 43 45 8 29 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT G 108 G 108 14 43 45 16 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT E 109 E 109 14 43 45 16 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT V 110 V 110 14 43 45 4 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT R 111 R 111 14 43 45 4 5 17 27 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT N 112 N 112 14 43 45 4 19 34 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT E 113 E 113 5 43 45 3 5 9 18 25 32 36 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT E 114 E 114 26 43 45 3 12 31 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT N 115 N 115 26 43 45 4 21 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT A 116 A 116 26 43 45 11 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT C 117 C 117 26 43 45 16 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT H 118 H 118 26 43 45 16 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT C 119 C 119 26 43 45 6 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT S 120 S 120 26 43 45 16 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT E 121 E 121 26 43 45 5 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT D 122 D 122 26 43 45 16 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT C 123 C 123 26 43 45 16 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT L 124 L 124 26 43 45 6 27 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT S 125 S 125 26 43 45 10 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT R 126 R 126 26 43 45 5 27 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT G 127 G 127 26 43 45 6 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT D 128 D 128 26 43 45 9 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT C 129 C 129 26 43 45 11 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT C 130 C 130 26 43 45 12 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT T 131 T 131 26 43 45 16 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT N 132 N 132 26 43 45 16 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT Y 133 Y 133 26 43 45 16 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT Q 134 Q 134 26 43 45 16 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT V 135 V 135 26 43 45 16 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT V 136 V 136 26 43 45 16 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT C 137 C 137 26 43 45 16 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT K 138 K 138 26 43 45 11 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT G 139 G 139 26 43 45 4 19 34 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 LCS_GDT E 140 E 140 3 42 45 3 3 3 3 4 5 25 29 33 40 41 41 43 44 45 45 45 45 45 45 LCS_AVERAGE LCS_A: 79.21 ( 44.00 93.63 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 16 30 35 38 39 40 40 41 42 43 43 44 44 44 45 45 45 45 45 45 GDT PERCENT_AT 35.56 66.67 77.78 84.44 86.67 88.89 88.89 91.11 93.33 95.56 95.56 97.78 97.78 97.78 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.34 0.66 0.81 0.97 1.08 1.17 1.17 1.46 1.70 1.89 1.89 2.11 2.11 2.11 2.39 2.39 2.39 2.39 2.39 2.39 GDT RMS_ALL_AT 2.64 2.60 2.57 2.54 2.49 2.48 2.48 2.45 2.42 2.43 2.43 2.42 2.42 2.42 2.39 2.39 2.39 2.39 2.39 2.39 # Checking swapping # possible swapping detected: E 101 E 101 # possible swapping detected: D 105 D 105 # possible swapping detected: E 114 E 114 # possible swapping detected: E 121 E 121 # possible swapping detected: D 128 D 128 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA T 96 T 96 6.431 0 0.035 1.015 8.201 22.619 19.728 LGA A 97 A 97 6.107 0 0.199 0.239 8.620 24.048 19.810 LGA R 98 R 98 6.077 0 0.659 1.021 18.142 26.786 10.000 LGA G 99 G 99 0.647 0 0.386 0.386 2.167 84.048 84.048 LGA W 100 W 100 0.644 0 0.239 0.472 6.288 88.214 59.456 LGA E 101 E 101 0.533 0 0.128 0.750 2.295 88.452 82.751 LGA C 102 C 102 0.997 0 0.086 0.684 2.331 85.952 81.667 LGA T 103 T 103 1.289 0 0.047 0.199 2.283 81.429 75.442 LGA K 104 K 104 1.303 0 0.051 0.872 1.737 77.143 78.624 LGA D 105 D 105 1.871 0 0.154 0.936 4.857 70.833 59.107 LGA R 106 R 106 0.734 0 0.150 1.218 6.156 90.476 74.545 LGA C 107 C 107 1.487 0 0.052 0.740 4.023 81.429 72.619 LGA G 108 G 108 0.898 0 0.177 0.177 1.146 90.595 90.595 LGA E 109 E 109 1.110 0 0.034 0.657 2.738 81.429 76.085 LGA V 110 V 110 1.165 0 0.604 0.968 3.486 71.429 67.755 LGA R 111 R 111 2.739 0 0.146 1.143 13.535 57.500 25.108 LGA N 112 N 112 1.667 0 0.042 1.272 6.627 70.952 52.440 LGA E 113 E 113 5.420 0 0.198 1.017 13.212 34.405 16.243 LGA E 114 E 114 2.400 0 0.598 0.919 6.486 59.167 41.746 LGA N 115 N 115 1.400 0 0.058 0.859 4.719 83.810 67.679 LGA A 116 A 116 1.062 0 0.032 0.056 1.672 85.952 83.333 LGA C 117 C 117 0.526 0 0.030 0.100 1.043 88.214 90.556 LGA H 118 H 118 0.935 0 0.121 1.111 2.889 88.214 80.095 LGA C 119 C 119 0.868 0 0.190 0.309 1.554 90.476 86.032 LGA S 120 S 120 0.393 0 0.038 0.135 1.038 92.857 90.556 LGA E 121 E 121 1.121 0 0.110 0.592 3.247 81.548 69.894 LGA D 122 D 122 0.570 0 0.174 1.274 4.288 88.214 77.262 LGA C 123 C 123 0.702 0 0.075 0.119 1.369 90.595 90.556 LGA L 124 L 124 1.475 0 0.061 1.452 5.283 77.381 69.524 LGA S 125 S 125 1.530 0 0.207 0.223 2.461 72.976 75.794 LGA R 126 R 126 1.327 0 0.170 1.100 2.494 79.286 76.926 LGA G 127 G 127 0.870 0 0.123 0.123 0.873 90.476 90.476 LGA D 128 D 128 0.999 0 0.224 1.076 2.441 85.952 78.452 LGA C 129 C 129 1.111 0 0.023 0.161 1.193 85.952 84.444 LGA C 130 C 130 0.713 0 0.051 0.059 1.218 88.214 87.460 LGA T 131 T 131 0.899 0 0.165 0.153 1.762 95.238 86.871 LGA N 132 N 132 0.376 0 0.218 0.820 3.780 90.595 78.452 LGA Y 133 Y 133 0.513 0 0.070 0.419 1.521 97.619 89.881 LGA Q 134 Q 134 0.640 0 0.067 0.694 3.061 90.476 82.011 LGA V 135 V 135 0.896 0 0.052 0.098 1.102 90.476 89.184 LGA V 136 V 136 0.654 0 0.118 0.127 0.799 95.238 94.558 LGA C 137 C 137 0.448 0 0.157 0.771 3.112 90.595 83.810 LGA K 138 K 138 1.164 0 0.246 0.878 6.845 77.381 52.804 LGA G 139 G 139 2.281 0 0.719 0.719 5.516 49.048 49.048 LGA E 140 E 140 8.186 0 0.185 1.279 14.758 7.619 3.439 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 45 180 180 100.00 345 345 100.00 45 SUMMARY(RMSD_GDC): 2.391 2.342 4.051 76.474 68.819 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 45 45 4.0 41 1.46 85.556 89.470 2.632 LGA_LOCAL RMSD: 1.458 Number of atoms: 41 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.448 Number of assigned atoms: 45 Std_ASGN_ATOMS RMSD: 2.391 Standard rmsd on all 45 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.557293 * X + -0.355578 * Y + 0.750326 * Z + 7.471085 Y_new = 0.756092 * X + -0.590782 * Y + 0.281605 * Z + 92.252487 Z_new = 0.343147 * X + 0.724252 * Y + 0.598088 * Z + 12.659072 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.205971 -0.350265 0.880520 [DEG: 126.3928 -20.0687 50.4501 ] ZXZ: 1.929839 0.929683 0.442465 [DEG: 110.5716 53.2669 25.3513 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS490_1-D2 REMARK 2: T0543-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS490_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 45 45 4.0 41 1.46 89.470 2.39 REMARK ---------------------------------------------------------- MOLECULE T0543TS490_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT N/A ATOM 728 N THR 96 14.841 91.826 20.170 1.00215.72 N ATOM 729 CA THR 96 15.438 90.808 20.988 1.00215.72 C ATOM 730 CB THR 96 15.918 91.352 22.297 1.00215.72 C ATOM 731 OG1 THR 96 16.559 90.329 23.043 1.00215.72 O ATOM 732 CG2 THR 96 14.709 91.901 23.076 1.00215.72 C ATOM 733 C THR 96 14.500 89.686 21.348 1.00215.72 C ATOM 734 O THR 96 14.959 88.660 21.832 1.00215.72 O ATOM 735 N ALA 97 13.177 89.808 21.164 1.00202.68 N ATOM 736 CA ALA 97 12.308 88.754 21.626 1.00202.68 C ATOM 737 CB ALA 97 10.855 89.208 21.834 1.00202.68 C ATOM 738 C ALA 97 12.302 87.633 20.638 1.00202.68 C ATOM 739 O ALA 97 12.910 87.722 19.573 1.00202.68 O ATOM 740 N ARG 98 11.636 86.515 20.999 1.00102.82 N ATOM 741 CA ARG 98 11.558 85.399 20.102 1.00102.82 C ATOM 742 CB ARG 98 10.788 84.199 20.673 1.00102.82 C ATOM 743 CG ARG 98 11.432 83.566 21.906 1.00102.82 C ATOM 744 CD ARG 98 10.574 82.456 22.520 1.00102.82 C ATOM 745 NE ARG 98 9.303 83.089 22.973 1.00102.82 N ATOM 746 CZ ARG 98 8.180 82.336 23.156 1.00102.82 C ATOM 747 NH1 ARG 98 8.210 80.988 22.941 1.00102.82 N ATOM 748 NH2 ARG 98 7.018 82.931 23.556 1.00102.82 N ATOM 749 C ARG 98 10.776 85.870 18.924 1.00102.82 C ATOM 750 O ARG 98 9.822 86.631 19.077 1.00102.82 O ATOM 751 N GLY 99 11.173 85.438 17.709 1.00 40.19 N ATOM 752 CA GLY 99 10.449 85.860 16.548 1.00 40.19 C ATOM 753 C GLY 99 10.230 84.665 15.678 1.00 40.19 C ATOM 754 O GLY 99 11.037 84.342 14.807 1.00 40.19 O ATOM 755 N TRP 100 9.093 83.991 15.908 1.00 76.49 N ATOM 756 CA TRP 100 8.671 82.828 15.189 1.00 76.49 C ATOM 757 CB TRP 100 7.398 82.207 15.784 1.00 76.49 C ATOM 758 CG TRP 100 7.570 81.567 17.137 1.00 76.49 C ATOM 759 CD2 TRP 100 7.512 80.151 17.364 1.00 76.49 C ATOM 760 CD1 TRP 100 7.762 82.147 18.356 1.00 76.49 C ATOM 761 NE1 TRP 100 7.838 81.181 19.328 1.00 76.49 N ATOM 762 CE2 TRP 100 7.680 79.947 18.732 1.00 76.49 C ATOM 763 CE3 TRP 100 7.325 79.109 16.501 1.00 76.49 C ATOM 764 CZ2 TRP 100 7.667 78.689 19.262 1.00 76.49 C ATOM 765 CZ3 TRP 100 7.317 77.840 17.040 1.00 76.49 C ATOM 766 CH2 TRP 100 7.486 77.634 18.393 1.00 76.49 C ATOM 767 C TRP 100 8.305 83.214 13.792 1.00 76.49 C ATOM 768 O TRP 100 8.526 82.457 12.850 1.00 76.49 O ATOM 769 N GLU 101 7.703 84.405 13.629 1.00 67.67 N ATOM 770 CA GLU 101 7.154 84.763 12.353 1.00 67.67 C ATOM 771 CB GLU 101 5.853 85.570 12.463 1.00 67.67 C ATOM 772 CG GLU 101 4.678 84.753 12.999 1.00 67.67 C ATOM 773 CD GLU 101 3.525 85.719 13.220 1.00 67.67 C ATOM 774 OE1 GLU 101 3.607 86.513 14.194 1.00 67.67 O ATOM 775 OE2 GLU 101 2.554 85.693 12.422 1.00 67.67 O ATOM 776 C GLU 101 8.110 85.559 11.526 1.00 67.67 C ATOM 777 O GLU 101 9.176 85.974 11.977 1.00 67.67 O ATOM 778 N CYS 102 7.730 85.741 10.244 1.00 41.91 N ATOM 779 CA CYS 102 8.497 86.490 9.296 1.00 41.91 C ATOM 780 CB CYS 102 8.843 85.673 8.038 1.00 41.91 C ATOM 781 SG CYS 102 9.881 86.565 6.844 1.00 41.91 S ATOM 782 C CYS 102 7.650 87.648 8.878 1.00 41.91 C ATOM 783 O CYS 102 6.456 87.692 9.168 1.00 41.91 O ATOM 784 N THR 103 8.263 88.637 8.201 1.00 35.96 N ATOM 785 CA THR 103 7.513 89.769 7.749 1.00 35.96 C ATOM 786 CB THR 103 8.062 91.089 8.207 1.00 35.96 C ATOM 787 OG1 THR 103 9.362 91.299 7.679 1.00 35.96 O ATOM 788 CG2 THR 103 8.110 91.089 9.744 1.00 35.96 C ATOM 789 C THR 103 7.573 89.737 6.259 1.00 35.96 C ATOM 790 O THR 103 8.416 89.059 5.676 1.00 35.96 O ATOM 791 N LYS 104 6.660 90.470 5.600 1.00 52.19 N ATOM 792 CA LYS 104 6.590 90.425 4.170 1.00 52.19 C ATOM 793 CB LYS 104 5.490 91.331 3.589 1.00 52.19 C ATOM 794 CG LYS 104 5.412 91.281 2.060 1.00 52.19 C ATOM 795 CD LYS 104 4.142 91.911 1.485 1.00 52.19 C ATOM 796 CE LYS 104 4.259 93.414 1.226 1.00 52.19 C ATOM 797 NZ LYS 104 2.992 93.932 0.663 1.00 52.19 N ATOM 798 C LYS 104 7.888 90.897 3.609 1.00 52.19 C ATOM 799 O LYS 104 8.419 90.304 2.671 1.00 52.19 O ATOM 800 N ASP 105 8.443 91.973 4.191 1.00 30.50 N ATOM 801 CA ASP 105 9.657 92.544 3.688 1.00 30.50 C ATOM 802 CB ASP 105 10.111 93.774 4.493 1.00 30.50 C ATOM 803 CG ASP 105 9.109 94.901 4.282 1.00 30.50 C ATOM 804 OD1 ASP 105 8.185 94.730 3.444 1.00 30.50 O ATOM 805 OD2 ASP 105 9.258 95.953 4.962 1.00 30.50 O ATOM 806 C ASP 105 10.731 91.521 3.819 1.00 30.50 C ATOM 807 O ASP 105 11.569 91.358 2.934 1.00 30.50 O ATOM 808 N ARG 106 10.696 90.774 4.933 1.00 83.59 N ATOM 809 CA ARG 106 11.716 89.827 5.242 1.00 83.59 C ATOM 810 CB ARG 106 11.521 89.171 6.617 1.00 83.59 C ATOM 811 CG ARG 106 11.880 90.110 7.771 1.00 83.59 C ATOM 812 CD ARG 106 11.703 89.495 9.161 1.00 83.59 C ATOM 813 NE ARG 106 12.102 90.533 10.152 1.00 83.59 N ATOM 814 CZ ARG 106 11.512 90.573 11.385 1.00 83.59 C ATOM 815 NH1 ARG 106 10.556 89.659 11.717 1.00 83.59 N ATOM 816 NH2 ARG 106 11.876 91.540 12.277 1.00 83.59 N ATOM 817 C ARG 106 11.773 88.766 4.198 1.00 83.59 C ATOM 818 O ARG 106 12.860 88.277 3.890 1.00 83.59 O ATOM 819 N CYS 107 10.621 88.380 3.621 1.00 43.07 N ATOM 820 CA CYS 107 10.648 87.317 2.657 1.00 43.07 C ATOM 821 CB CYS 107 9.270 86.984 2.050 1.00 43.07 C ATOM 822 SG CYS 107 9.333 85.558 0.920 1.00 43.07 S ATOM 823 C CYS 107 11.571 87.711 1.549 1.00 43.07 C ATOM 824 O CYS 107 11.561 88.850 1.081 1.00 43.07 O ATOM 825 N GLY 108 12.423 86.756 1.126 1.00 24.54 N ATOM 826 CA GLY 108 13.362 87.008 0.076 1.00 24.54 C ATOM 827 C GLY 108 14.501 87.820 0.613 1.00 24.54 C ATOM 828 O GLY 108 15.020 88.687 -0.091 1.00 24.54 O ATOM 829 N GLU 109 14.934 87.585 1.871 1.00103.44 N ATOM 830 CA GLU 109 16.022 88.407 2.319 1.00103.44 C ATOM 831 CB GLU 109 15.840 89.085 3.692 1.00103.44 C ATOM 832 CG GLU 109 15.903 88.171 4.910 1.00103.44 C ATOM 833 CD GLU 109 15.863 89.096 6.119 1.00103.44 C ATOM 834 OE1 GLU 109 16.862 89.836 6.333 1.00103.44 O ATOM 835 OE2 GLU 109 14.824 89.097 6.829 1.00103.44 O ATOM 836 C GLU 109 17.307 87.633 2.321 1.00103.44 C ATOM 837 O GLU 109 17.338 86.431 2.580 1.00103.44 O ATOM 838 N VAL 110 18.399 88.349 1.971 1.00 48.46 N ATOM 839 CA VAL 110 19.741 87.854 1.810 1.00 48.46 C ATOM 840 CB VAL 110 20.657 88.897 1.238 1.00 48.46 C ATOM 841 CG1 VAL 110 22.068 88.297 1.105 1.00 48.46 C ATOM 842 CG2 VAL 110 20.059 89.396 -0.088 1.00 48.46 C ATOM 843 C VAL 110 20.366 87.391 3.095 1.00 48.46 C ATOM 844 O VAL 110 20.946 86.307 3.136 1.00 48.46 O ATOM 845 N ARG 111 20.298 88.187 4.182 1.00106.89 N ATOM 846 CA ARG 111 20.975 87.744 5.372 1.00106.89 C ATOM 847 CB ARG 111 22.392 88.324 5.544 1.00106.89 C ATOM 848 CG ARG 111 22.433 89.852 5.606 1.00106.89 C ATOM 849 CD ARG 111 23.812 90.425 5.947 1.00106.89 C ATOM 850 NE ARG 111 24.084 90.122 7.382 1.00106.89 N ATOM 851 CZ ARG 111 25.123 90.734 8.023 1.00106.89 C ATOM 852 NH1 ARG 111 25.923 91.608 7.347 1.00106.89 N ATOM 853 NH2 ARG 111 25.363 90.472 9.341 1.00106.89 N ATOM 854 C ARG 111 20.187 88.149 6.576 1.00106.89 C ATOM 855 O ARG 111 19.359 89.057 6.515 1.00106.89 O ATOM 856 N ASN 112 20.415 87.456 7.712 1.00 49.06 N ATOM 857 CA ASN 112 19.706 87.784 8.915 1.00 49.06 C ATOM 858 CB ASN 112 18.693 86.703 9.327 1.00 49.06 C ATOM 859 CG ASN 112 17.543 86.760 8.336 1.00 49.06 C ATOM 860 OD1 ASN 112 16.818 87.756 8.311 1.00 49.06 O ATOM 861 ND2 ASN 112 17.370 85.698 7.505 1.00 49.06 N ATOM 862 C ASN 112 20.689 87.923 10.029 1.00 49.06 C ATOM 863 O ASN 112 21.516 87.042 10.256 1.00 49.06 O ATOM 864 N GLU 113 20.633 89.065 10.744 1.00 46.72 N ATOM 865 CA GLU 113 21.534 89.292 11.834 1.00 46.72 C ATOM 866 CB GLU 113 21.399 90.718 12.389 1.00 46.72 C ATOM 867 CG GLU 113 21.822 91.780 11.370 1.00 46.72 C ATOM 868 CD GLU 113 21.478 93.153 11.925 1.00 46.72 C ATOM 869 OE1 GLU 113 20.735 93.217 12.941 1.00 46.72 O ATOM 870 OE2 GLU 113 21.948 94.159 11.329 1.00 46.72 O ATOM 871 C GLU 113 21.218 88.329 12.934 1.00 46.72 C ATOM 872 O GLU 113 22.085 87.585 13.388 1.00 46.72 O ATOM 873 N GLU 114 19.947 88.291 13.382 1.00 80.01 N ATOM 874 CA GLU 114 19.615 87.370 14.429 1.00 80.01 C ATOM 875 CB GLU 114 19.811 87.954 15.841 1.00 80.01 C ATOM 876 CG GLU 114 18.976 89.205 16.117 1.00 80.01 C ATOM 877 CD GLU 114 19.330 89.695 17.513 1.00 80.01 C ATOM 878 OE1 GLU 114 19.780 88.855 18.339 1.00 80.01 O ATOM 879 OE2 GLU 114 19.160 90.916 17.772 1.00 80.01 O ATOM 880 C GLU 114 18.177 87.015 14.266 1.00 80.01 C ATOM 881 O GLU 114 17.296 87.861 14.407 1.00 80.01 O ATOM 882 N ASN 115 17.901 85.739 13.944 1.00 48.03 N ATOM 883 CA ASN 115 16.534 85.344 13.795 1.00 48.03 C ATOM 884 CB ASN 115 15.985 85.604 12.380 1.00 48.03 C ATOM 885 CG ASN 115 14.469 85.475 12.400 1.00 48.03 C ATOM 886 OD1 ASN 115 13.917 84.509 12.926 1.00 48.03 O ATOM 887 ND2 ASN 115 13.770 86.483 11.810 1.00 48.03 N ATOM 888 C ASN 115 16.474 83.876 14.043 1.00 48.03 C ATOM 889 O ASN 115 17.349 83.128 13.610 1.00 48.03 O ATOM 890 N ALA 116 15.439 83.424 14.771 1.00 28.62 N ATOM 891 CA ALA 116 15.301 82.027 15.049 1.00 28.62 C ATOM 892 CB ALA 116 14.113 81.720 15.975 1.00 28.62 C ATOM 893 C ALA 116 15.054 81.319 13.756 1.00 28.62 C ATOM 894 O ALA 116 15.635 80.268 13.496 1.00 28.62 O ATOM 895 N CYS 117 14.192 81.904 12.897 1.00 52.12 N ATOM 896 CA CYS 117 13.842 81.262 11.660 1.00 52.12 C ATOM 897 CB CYS 117 12.324 81.040 11.453 1.00 52.12 C ATOM 898 SG CYS 117 11.344 82.570 11.396 1.00 52.12 S ATOM 899 C CYS 117 14.371 82.073 10.517 1.00 52.12 C ATOM 900 O CYS 117 14.897 83.167 10.714 1.00 52.12 O ATOM 901 N HIS 118 14.270 81.531 9.281 1.00 50.50 N ATOM 902 CA HIS 118 14.823 82.211 8.141 1.00 50.50 C ATOM 903 ND1 HIS 118 18.176 82.013 8.386 1.00 50.50 N ATOM 904 CG HIS 118 17.106 81.152 8.292 1.00 50.50 C ATOM 905 CB HIS 118 15.909 81.392 7.421 1.00 50.50 C ATOM 906 NE2 HIS 118 18.610 80.312 9.750 1.00 50.50 N ATOM 907 CD2 HIS 118 17.387 80.119 9.132 1.00 50.50 C ATOM 908 CE1 HIS 118 19.046 81.463 9.271 1.00 50.50 C ATOM 909 C HIS 118 13.750 82.517 7.132 1.00 50.50 C ATOM 910 O HIS 118 12.979 81.653 6.719 1.00 50.50 O ATOM 911 N CYS 119 13.686 83.810 6.754 1.00 81.58 N ATOM 912 CA CYS 119 12.804 84.439 5.805 1.00 81.58 C ATOM 913 CB CYS 119 12.702 85.956 6.030 1.00 81.58 C ATOM 914 SG CYS 119 11.769 86.304 7.549 1.00 81.58 S ATOM 915 C CYS 119 13.190 84.180 4.371 1.00 81.58 C ATOM 916 O CYS 119 12.408 84.475 3.467 1.00 81.58 O ATOM 917 N SER 120 14.426 83.711 4.103 1.00 43.71 N ATOM 918 CA SER 120 14.859 83.561 2.736 1.00 43.71 C ATOM 919 CB SER 120 16.389 83.519 2.572 1.00 43.71 C ATOM 920 OG SER 120 16.920 82.349 3.176 1.00 43.71 O ATOM 921 C SER 120 14.304 82.321 2.100 1.00 43.71 C ATOM 922 O SER 120 13.778 81.433 2.763 1.00 43.71 O ATOM 923 N GLU 121 14.431 82.261 0.755 1.00117.97 N ATOM 924 CA GLU 121 13.951 81.203 -0.093 1.00117.97 C ATOM 925 CB GLU 121 14.127 81.504 -1.587 1.00117.97 C ATOM 926 CG GLU 121 13.582 80.388 -2.477 1.00117.97 C ATOM 927 CD GLU 121 12.065 80.395 -2.344 1.00117.97 C ATOM 928 OE1 GLU 121 11.449 81.449 -2.649 1.00117.97 O ATOM 929 OE2 GLU 121 11.504 79.346 -1.925 1.00117.97 O ATOM 930 C GLU 121 14.693 79.941 0.200 1.00117.97 C ATOM 931 O GLU 121 14.143 78.847 0.088 1.00117.97 O ATOM 932 N ASP 122 15.968 80.064 0.600 1.00 46.62 N ATOM 933 CA ASP 122 16.788 78.915 0.841 1.00 46.62 C ATOM 934 CB ASP 122 18.197 79.284 1.330 1.00 46.62 C ATOM 935 CG ASP 122 18.937 79.880 0.142 1.00 46.62 C ATOM 936 OD1 ASP 122 18.972 79.212 -0.927 1.00 46.62 O ATOM 937 OD2 ASP 122 19.480 81.007 0.287 1.00 46.62 O ATOM 938 C ASP 122 16.119 78.093 1.891 1.00 46.62 C ATOM 939 O ASP 122 16.284 76.875 1.941 1.00 46.62 O ATOM 940 N CYS 123 15.313 78.742 2.746 1.00 45.62 N ATOM 941 CA CYS 123 14.661 78.035 3.806 1.00 45.62 C ATOM 942 CB CYS 123 13.715 78.906 4.661 1.00 45.62 C ATOM 943 SG CYS 123 12.173 79.368 3.812 1.00 45.62 S ATOM 944 C CYS 123 13.830 76.964 3.184 1.00 45.62 C ATOM 945 O CYS 123 13.610 75.919 3.790 1.00 45.62 O ATOM 946 N LEU 124 13.326 77.179 1.960 1.00 38.92 N ATOM 947 CA LEU 124 12.490 76.168 1.383 1.00 38.92 C ATOM 948 CB LEU 124 12.007 76.541 -0.030 1.00 38.92 C ATOM 949 CG LEU 124 11.104 75.478 -0.686 1.00 38.92 C ATOM 950 CD1 LEU 124 9.786 75.314 0.089 1.00 38.92 C ATOM 951 CD2 LEU 124 10.872 75.776 -2.177 1.00 38.92 C ATOM 952 C LEU 124 13.273 74.894 1.266 1.00 38.92 C ATOM 953 O LEU 124 12.803 73.831 1.666 1.00 38.92 O ATOM 954 N SER 125 14.503 74.966 0.724 1.00 31.40 N ATOM 955 CA SER 125 15.281 73.775 0.541 1.00 31.40 C ATOM 956 CB SER 125 16.570 74.031 -0.256 1.00 31.40 C ATOM 957 OG SER 125 17.413 74.922 0.460 1.00 31.40 O ATOM 958 C SER 125 15.680 73.209 1.870 1.00 31.40 C ATOM 959 O SER 125 15.462 72.031 2.147 1.00 31.40 O ATOM 960 N ARG 126 16.257 74.064 2.734 1.00103.82 N ATOM 961 CA ARG 126 16.819 73.686 4.002 1.00103.82 C ATOM 962 CB ARG 126 17.519 74.884 4.662 1.00103.82 C ATOM 963 CG ARG 126 18.653 75.430 3.788 1.00103.82 C ATOM 964 CD ARG 126 18.981 76.907 4.027 1.00103.82 C ATOM 965 NE ARG 126 20.208 76.992 4.865 1.00103.82 N ATOM 966 CZ ARG 126 21.062 78.046 4.697 1.00103.82 C ATOM 967 NH1 ARG 126 20.809 78.986 3.741 1.00103.82 N ATOM 968 NH2 ARG 126 22.170 78.158 5.485 1.00103.82 N ATOM 969 C ARG 126 15.761 73.167 4.935 1.00103.82 C ATOM 970 O ARG 126 15.980 72.175 5.630 1.00103.82 O ATOM 971 N GLY 127 14.570 73.797 4.948 1.00 24.83 N ATOM 972 CA GLY 127 13.526 73.414 5.860 1.00 24.83 C ATOM 973 C GLY 127 13.516 74.371 7.021 1.00 24.83 C ATOM 974 O GLY 127 12.881 74.116 8.042 1.00 24.83 O ATOM 975 N ASP 128 14.258 75.488 6.880 1.00 56.80 N ATOM 976 CA ASP 128 14.421 76.556 7.835 1.00 56.80 C ATOM 977 CB ASP 128 15.560 77.514 7.445 1.00 56.80 C ATOM 978 CG ASP 128 16.884 76.771 7.564 1.00 56.80 C ATOM 979 OD1 ASP 128 16.921 75.723 8.261 1.00 56.80 O ATOM 980 OD2 ASP 128 17.880 77.248 6.955 1.00 56.80 O ATOM 981 C ASP 128 13.180 77.407 7.965 1.00 56.80 C ATOM 982 O ASP 128 12.984 78.055 8.992 1.00 56.80 O ATOM 983 N CYS 129 12.313 77.430 6.931 1.00 65.63 N ATOM 984 CA CYS 129 11.207 78.353 6.819 1.00 65.63 C ATOM 985 CB CYS 129 10.208 77.976 5.711 1.00 65.63 C ATOM 986 SG CYS 129 10.957 77.759 4.064 1.00 65.63 S ATOM 987 C CYS 129 10.428 78.474 8.097 1.00 65.63 C ATOM 988 O CYS 129 10.281 77.525 8.867 1.00 65.63 O ATOM 989 N CYS 130 9.914 79.701 8.338 1.00 54.02 N ATOM 990 CA CYS 130 9.191 80.058 9.525 1.00 54.02 C ATOM 991 CB CYS 130 8.976 81.575 9.679 1.00 54.02 C ATOM 992 SG CYS 130 10.507 82.555 9.539 1.00 54.02 S ATOM 993 C CYS 130 7.848 79.409 9.467 1.00 54.02 C ATOM 994 O CYS 130 7.409 78.940 8.418 1.00 54.02 O ATOM 995 N THR 131 7.160 79.357 10.623 1.00113.29 N ATOM 996 CA THR 131 5.886 78.708 10.674 1.00113.29 C ATOM 997 CB THR 131 5.260 78.760 12.040 1.00113.29 C ATOM 998 OG1 THR 131 5.037 80.106 12.433 1.00113.29 O ATOM 999 CG2 THR 131 6.207 78.083 13.039 1.00113.29 C ATOM 1000 C THR 131 4.961 79.395 9.723 1.00113.29 C ATOM 1001 O THR 131 4.296 78.735 8.926 1.00113.29 O ATOM 1002 N ASN 132 4.907 80.742 9.760 1.00184.00 N ATOM 1003 CA ASN 132 3.990 81.420 8.886 1.00184.00 C ATOM 1004 CB ASN 132 3.368 82.683 9.502 1.00184.00 C ATOM 1005 CG ASN 132 2.742 82.368 10.842 1.00184.00 C ATOM 1006 OD1 ASN 132 2.954 81.303 11.413 1.00184.00 O ATOM 1007 ND2 ASN 132 1.948 83.333 11.370 1.00184.00 N ATOM 1008 C ASN 132 4.782 81.987 7.758 1.00184.00 C ATOM 1009 O ASN 132 4.574 83.139 7.382 1.00184.00 O ATOM 1010 N TYR 133 5.713 81.210 7.185 1.00 66.85 N ATOM 1011 CA TYR 133 6.500 81.740 6.110 1.00 66.85 C ATOM 1012 CB TYR 133 7.647 80.780 5.740 1.00 66.85 C ATOM 1013 CG TYR 133 8.473 81.333 4.627 1.00 66.85 C ATOM 1014 CD1 TYR 133 9.446 82.274 4.872 1.00 66.85 C ATOM 1015 CD2 TYR 133 8.289 80.891 3.339 1.00 66.85 C ATOM 1016 CE1 TYR 133 10.217 82.773 3.846 1.00 66.85 C ATOM 1017 CE2 TYR 133 9.056 81.384 2.309 1.00 66.85 C ATOM 1018 CZ TYR 133 10.021 82.329 2.560 1.00 66.85 C ATOM 1019 OH TYR 133 10.809 82.834 1.504 1.00 66.85 O ATOM 1020 C TYR 133 5.614 81.920 4.920 1.00 66.85 C ATOM 1021 O TYR 133 5.580 82.983 4.302 1.00 66.85 O ATOM 1022 N GLN 134 4.847 80.866 4.583 1.00 44.21 N ATOM 1023 CA GLN 134 3.988 80.907 3.439 1.00 44.21 C ATOM 1024 CB GLN 134 3.374 79.549 3.073 1.00 44.21 C ATOM 1025 CG GLN 134 4.399 78.535 2.565 1.00 44.21 C ATOM 1026 CD GLN 134 3.626 77.330 2.052 1.00 44.21 C ATOM 1027 OE1 GLN 134 2.650 77.483 1.321 1.00 44.21 O ATOM 1028 NE2 GLN 134 4.065 76.105 2.447 1.00 44.21 N ATOM 1029 C GLN 134 2.864 81.845 3.688 1.00 44.21 C ATOM 1030 O GLN 134 2.444 82.561 2.784 1.00 44.21 O ATOM 1031 N VAL 135 2.331 81.867 4.921 1.00 31.00 N ATOM 1032 CA VAL 135 1.202 82.717 5.144 1.00 31.00 C ATOM 1033 CB VAL 135 0.708 82.671 6.562 1.00 31.00 C ATOM 1034 CG1 VAL 135 -0.454 83.669 6.719 1.00 31.00 C ATOM 1035 CG2 VAL 135 0.336 81.216 6.900 1.00 31.00 C ATOM 1036 C VAL 135 1.611 84.123 4.849 1.00 31.00 C ATOM 1037 O VAL 135 0.962 84.815 4.066 1.00 31.00 O ATOM 1038 N VAL 136 2.723 84.578 5.452 1.00 47.96 N ATOM 1039 CA VAL 136 3.149 85.923 5.221 1.00 47.96 C ATOM 1040 CB VAL 136 4.272 86.320 6.137 1.00 47.96 C ATOM 1041 CG1 VAL 136 4.714 87.751 5.788 1.00 47.96 C ATOM 1042 CG2 VAL 136 3.802 86.138 7.593 1.00 47.96 C ATOM 1043 C VAL 136 3.622 86.117 3.808 1.00 47.96 C ATOM 1044 O VAL 136 3.091 86.955 3.081 1.00 47.96 O ATOM 1045 N CYS 137 4.627 85.328 3.374 1.00 50.99 N ATOM 1046 CA CYS 137 5.233 85.546 2.087 1.00 50.99 C ATOM 1047 CB CYS 137 6.553 84.778 1.899 1.00 50.99 C ATOM 1048 SG CYS 137 7.400 85.258 0.363 1.00 50.99 S ATOM 1049 C CYS 137 4.317 85.206 0.947 1.00 50.99 C ATOM 1050 O CYS 137 4.150 85.995 0.019 1.00 50.99 O ATOM 1051 N LYS 138 3.675 84.025 1.001 1.00 84.13 N ATOM 1052 CA LYS 138 2.860 83.541 -0.080 1.00 84.13 C ATOM 1053 CB LYS 138 2.378 82.088 0.104 1.00 84.13 C ATOM 1054 CG LYS 138 1.654 81.493 -1.104 1.00 84.13 C ATOM 1055 CD LYS 138 2.583 81.211 -2.284 1.00 84.13 C ATOM 1056 CE LYS 138 1.870 80.604 -3.493 1.00 84.13 C ATOM 1057 NZ LYS 138 2.838 80.377 -4.587 1.00 84.13 N ATOM 1058 C LYS 138 1.647 84.406 -0.258 1.00 84.13 C ATOM 1059 O LYS 138 1.143 84.545 -1.372 1.00 84.13 O ATOM 1060 N GLY 139 1.151 85.030 0.826 1.00 31.02 N ATOM 1061 CA GLY 139 -0.089 85.757 0.768 1.00 31.02 C ATOM 1062 C GLY 139 -0.049 86.790 -0.320 1.00 31.02 C ATOM 1063 O GLY 139 1.015 87.148 -0.822 1.00 31.02 O ATOM 1064 N GLU 140 -1.245 87.280 -0.720 1.00 44.03 N ATOM 1065 CA GLU 140 -1.355 88.241 -1.782 1.00 44.03 C ATOM 1066 CB GLU 140 -2.570 88.017 -2.693 1.00 44.03 C ATOM 1067 CG GLU 140 -2.668 89.045 -3.820 1.00 44.03 C ATOM 1068 CD GLU 140 -3.918 88.750 -4.633 1.00 44.03 C ATOM 1069 OE1 GLU 140 -4.179 87.547 -4.901 1.00 44.03 O ATOM 1070 OE2 GLU 140 -4.632 89.723 -4.991 1.00 44.03 O ATOM 1071 C GLU 140 -1.517 89.601 -1.193 1.00 44.03 C ATOM 1072 O GLU 140 -2.410 89.849 -0.383 1.00 44.03 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 345 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 51.51 61.4 88 100.0 88 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 56.92 59.7 62 100.0 62 ARMSMC BURIED . . . . . . . . 35.44 65.4 26 100.0 26 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 76.40 53.8 39 100.0 39 ARMSSC1 RELIABLE SIDE CHAINS . 76.99 52.8 36 100.0 36 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 83.79 46.2 26 100.0 26 ARMSSC1 BURIED . . . . . . . . 58.90 69.2 13 100.0 13 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 73.27 47.8 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 66.06 55.6 18 100.0 18 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 75.66 37.5 16 100.0 16 ARMSSC2 BURIED . . . . . . . . 67.49 71.4 7 100.0 7 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 73.45 30.8 13 100.0 13 ARMSSC3 RELIABLE SIDE CHAINS . 72.27 33.3 12 100.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 69.05 30.0 10 100.0 10 ARMSSC3 BURIED . . . . . . . . 86.50 33.3 3 100.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 65.35 33.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 65.35 33.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 70.92 50.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 52.46 0.0 2 100.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.39 (Number of atoms: 45) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.39 45 100.0 45 CRMSCA CRN = ALL/NP . . . . . 0.0531 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 2.73 32 100.0 32 CRMSCA BURIED . . . . . . . . 1.19 13 100.0 13 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.52 221 100.0 221 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 2.88 156 100.0 156 CRMSMC BURIED . . . . . . . . 1.32 65 100.0 65 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 5.38 165 100.0 165 CRMSSC RELIABLE SIDE CHAINS . 5.60 145 100.0 145 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 5.84 112 100.0 112 CRMSSC BURIED . . . . . . . . 4.26 53 100.0 53 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 4.09 345 100.0 345 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 4.44 240 100.0 240 CRMSALL BURIED . . . . . . . . 3.14 105 100.0 105 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 65.770 0.940 0.943 45 100.0 45 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 62.855 0.929 0.933 32 100.0 32 ERRCA BURIED . . . . . . . . 72.947 0.967 0.968 13 100.0 13 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 66.341 0.937 0.940 221 100.0 221 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 63.617 0.925 0.929 156 100.0 156 ERRMC BURIED . . . . . . . . 72.877 0.966 0.966 65 100.0 65 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 69.680 0.894 0.903 165 100.0 165 ERRSC RELIABLE SIDE CHAINS . 71.523 0.894 0.904 145 100.0 145 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 66.022 0.876 0.887 112 100.0 112 ERRSC BURIED . . . . . . . . 77.410 0.933 0.936 53 100.0 53 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 67.631 0.917 0.923 345 100.0 345 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 64.326 0.903 0.911 240 100.0 240 ERRALL BURIED . . . . . . . . 75.184 0.949 0.952 105 100.0 105 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 16 36 40 40 45 45 45 DISTCA CA (P) 35.56 80.00 88.89 88.89 100.00 45 DISTCA CA (RMS) 0.84 1.17 1.32 1.32 2.39 DISTCA ALL (N) 75 211 258 295 328 345 345 DISTALL ALL (P) 21.74 61.16 74.78 85.51 95.07 345 DISTALL ALL (RMS) 0.81 1.23 1.52 2.03 2.88 DISTALL END of the results output