####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS490_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS490_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 56 - 95 2.28 2.28 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 38 56 - 93 1.95 2.34 LCS_AVERAGE: 93.44 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 72 - 93 0.93 2.37 LCS_AVERAGE: 37.00 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 7 38 40 14 27 28 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT S 57 S 57 7 38 40 14 27 28 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 58 C 58 7 38 40 14 27 28 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT K 59 K 59 7 38 40 12 27 28 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT G 60 G 60 7 38 40 12 27 28 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT R 61 R 61 7 38 40 14 27 28 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 62 C 62 7 38 40 14 27 28 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT F 63 F 63 4 38 40 3 4 8 12 21 33 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT E 64 E 64 4 38 40 3 19 28 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT L 65 L 65 4 38 40 3 4 4 21 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT Q 66 Q 66 4 38 40 3 4 4 11 26 32 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT E 67 E 67 4 38 40 3 4 26 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT V 68 V 68 4 38 40 3 4 4 5 7 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT G 69 G 69 4 38 40 0 3 4 12 21 33 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT P 70 P 70 5 38 40 2 4 5 7 11 17 21 35 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT P 71 P 71 19 38 40 3 12 24 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT D 72 D 72 22 38 40 3 9 17 30 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 73 C 73 22 38 40 12 27 28 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT R 74 R 74 22 38 40 14 27 28 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 75 C 75 22 38 40 14 27 28 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT D 76 D 76 22 38 40 14 27 28 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT N 77 N 77 22 38 40 4 14 26 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT L 78 L 78 22 38 40 14 27 28 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 79 C 79 22 38 40 14 27 28 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT K 80 K 80 22 38 40 14 27 28 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT S 81 S 81 22 38 40 8 27 28 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT Y 82 Y 82 22 38 40 9 27 28 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT S 83 S 83 22 38 40 8 27 28 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT S 84 S 84 22 38 40 8 27 28 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 85 C 85 22 38 40 14 27 28 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 86 C 86 22 38 40 14 27 28 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT H 87 H 87 22 38 40 9 27 28 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT D 88 D 88 22 38 40 14 27 28 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT F 89 F 89 22 38 40 14 27 28 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT D 90 D 90 22 38 40 12 27 28 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT E 91 E 91 22 38 40 7 27 28 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT L 92 L 92 22 38 40 14 27 28 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 93 C 93 22 38 40 12 27 28 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT L 94 L 94 4 26 40 3 4 8 13 23 31 35 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT K 95 K 95 3 25 40 0 3 4 4 4 4 26 36 37 38 39 40 40 40 40 40 40 40 40 40 LCS_AVERAGE LCS_A: 76.81 ( 37.00 93.44 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 14 27 28 31 33 34 35 37 38 39 39 40 40 40 40 40 40 40 40 40 GDT PERCENT_AT 35.00 67.50 70.00 77.50 82.50 85.00 87.50 92.50 95.00 97.50 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.37 0.66 0.71 1.02 1.17 1.26 1.38 1.68 1.84 2.08 2.07 2.28 2.28 2.28 2.28 2.28 2.28 2.28 2.28 2.28 GDT RMS_ALL_AT 2.52 2.40 2.38 2.35 2.35 2.35 2.33 2.34 2.32 2.31 2.29 2.28 2.28 2.28 2.28 2.28 2.28 2.28 2.28 2.28 # Checking swapping # possible swapping detected: F 63 F 63 # possible swapping detected: E 64 E 64 # possible swapping detected: E 67 E 67 # possible swapping detected: D 76 D 76 # possible swapping detected: D 90 D 90 # possible swapping detected: E 91 E 91 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 0.666 0 0.377 0.377 1.301 88.214 88.214 LGA S 57 S 57 0.548 0 0.080 0.075 0.617 90.476 92.063 LGA C 58 C 58 0.733 0 0.166 0.787 1.857 88.214 86.032 LGA K 59 K 59 1.000 0 0.046 0.742 4.307 88.214 71.799 LGA G 60 G 60 1.194 0 0.171 0.171 1.532 81.548 81.548 LGA R 61 R 61 0.552 0 0.152 0.976 2.344 92.857 85.758 LGA C 62 C 62 0.608 0 0.615 0.582 1.812 90.833 89.206 LGA F 63 F 63 3.445 0 0.284 1.429 10.497 61.190 28.571 LGA E 64 E 64 1.331 0 0.603 0.880 3.704 75.476 63.333 LGA L 65 L 65 2.728 0 0.627 0.591 4.310 54.286 53.929 LGA Q 66 Q 66 4.109 0 0.033 0.659 11.376 56.548 28.201 LGA E 67 E 67 2.145 0 0.067 1.154 9.558 70.952 37.249 LGA V 68 V 68 2.955 0 0.605 1.346 7.486 55.595 38.163 LGA G 69 G 69 5.088 0 0.463 0.463 5.213 30.476 30.476 LGA P 70 P 70 6.889 0 0.094 0.193 10.914 18.571 11.224 LGA P 71 P 71 3.187 0 0.219 0.526 4.395 60.357 51.293 LGA D 72 D 72 2.245 3 0.606 0.616 3.791 63.095 36.964 LGA C 73 C 73 0.612 0 0.198 0.220 1.145 88.214 87.460 LGA R 74 R 74 0.550 0 0.072 1.127 3.833 88.214 84.589 LGA C 75 C 75 0.302 0 0.197 0.589 3.573 92.976 84.286 LGA D 76 D 76 0.884 0 0.048 0.902 4.586 88.333 72.560 LGA N 77 N 77 2.099 0 0.081 0.378 3.666 70.833 59.643 LGA L 78 L 78 0.894 0 0.143 0.755 3.058 85.952 78.810 LGA C 79 C 79 0.666 0 0.024 0.115 1.208 90.476 88.968 LGA K 80 K 80 0.799 0 0.027 0.730 3.079 90.476 78.466 LGA S 81 S 81 1.025 0 0.041 0.669 2.614 85.952 80.397 LGA Y 82 Y 82 0.855 0 0.168 0.158 1.962 90.476 83.095 LGA S 83 S 83 1.059 0 0.264 0.238 1.970 85.952 81.587 LGA S 84 S 84 1.021 0 0.105 0.630 1.878 88.333 84.603 LGA C 85 C 85 0.589 0 0.070 0.516 1.329 90.476 88.968 LGA C 86 C 86 0.589 0 0.061 0.167 1.028 90.476 88.968 LGA H 87 H 87 0.968 0 0.076 0.187 2.284 90.476 78.333 LGA D 88 D 88 0.543 0 0.189 1.160 3.887 90.476 79.167 LGA F 89 F 89 0.474 0 0.084 0.191 0.696 97.619 99.134 LGA D 90 D 90 0.472 0 0.066 0.561 1.870 92.976 88.393 LGA E 91 E 91 0.813 0 0.137 0.632 2.918 92.857 81.905 LGA L 92 L 92 0.672 0 0.174 0.226 2.039 97.619 87.440 LGA C 93 C 93 0.433 0 0.634 0.577 1.666 86.190 84.683 LGA L 94 L 94 4.298 0 0.609 0.547 10.468 30.833 19.643 LGA K 95 K 95 6.432 0 0.089 1.127 14.557 17.976 10.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 2.278 2.208 3.481 77.277 68.628 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 37 1.68 84.375 88.348 2.075 LGA_LOCAL RMSD: 1.683 Number of atoms: 37 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.343 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 2.278 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.456189 * X + 0.361710 * Y + 0.813055 * Z + 7.627419 Y_new = -0.137089 * X + -0.874192 * Y + 0.465827 * Z + 73.968719 Z_new = 0.879260 * X + -0.323966 * Y + -0.349210 * Z + 19.648254 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.291924 -1.074307 -2.393677 [DEG: -16.7260 -61.5532 -137.1476 ] ZXZ: 2.091077 1.927524 1.923815 [DEG: 119.8099 110.4390 110.2265 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS490_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS490_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 37 1.68 88.348 2.28 REMARK ---------------------------------------------------------- MOLECULE T0543TS490_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT N/A ATOM 422 N GLY 56 35.833 72.751 18.944 1.00 42.23 N ATOM 423 CA GLY 56 34.613 72.117 19.329 1.00 42.23 C ATOM 424 C GLY 56 33.609 73.205 19.231 1.00 42.23 C ATOM 425 O GLY 56 33.335 73.902 20.208 1.00 42.23 O ATOM 426 N SER 57 33.024 73.367 18.031 1.00 37.52 N ATOM 427 CA SER 57 32.099 74.440 17.840 1.00 37.52 C ATOM 428 CB SER 57 32.534 75.444 16.760 1.00 37.52 C ATOM 429 OG SER 57 31.563 76.472 16.632 1.00 37.52 O ATOM 430 C SER 57 30.806 73.851 17.399 1.00 37.52 C ATOM 431 O SER 57 30.765 72.863 16.665 1.00 37.52 O ATOM 432 N CYS 58 29.710 74.441 17.903 1.00 59.36 N ATOM 433 CA CYS 58 28.364 74.035 17.637 1.00 59.36 C ATOM 434 CB CYS 58 27.346 74.627 18.627 1.00 59.36 C ATOM 435 SG CYS 58 25.679 73.954 18.365 1.00 59.36 S ATOM 436 C CYS 58 27.918 74.418 16.260 1.00 59.36 C ATOM 437 O CYS 58 27.034 73.773 15.702 1.00 59.36 O ATOM 438 N LYS 59 28.502 75.480 15.674 1.00 88.26 N ATOM 439 CA LYS 59 27.993 76.053 14.454 1.00 88.26 C ATOM 440 CB LYS 59 28.920 77.140 13.882 1.00 88.26 C ATOM 441 CG LYS 59 28.300 77.958 12.748 1.00 88.26 C ATOM 442 CD LYS 59 29.085 79.231 12.422 1.00 88.26 C ATOM 443 CE LYS 59 29.131 80.239 13.575 1.00 88.26 C ATOM 444 NZ LYS 59 30.113 81.306 13.281 1.00 88.26 N ATOM 445 C LYS 59 27.753 75.026 13.386 1.00 88.26 C ATOM 446 O LYS 59 28.654 74.296 12.977 1.00 88.26 O ATOM 447 N GLY 60 26.481 74.963 12.930 1.00 32.83 N ATOM 448 CA GLY 60 26.028 74.118 11.859 1.00 32.83 C ATOM 449 C GLY 60 25.579 72.803 12.423 1.00 32.83 C ATOM 450 O GLY 60 24.797 72.083 11.805 1.00 32.83 O ATOM 451 N ARG 61 26.079 72.482 13.629 1.00144.47 N ATOM 452 CA ARG 61 25.857 71.252 14.341 1.00144.47 C ATOM 453 CB ARG 61 26.843 71.054 15.502 1.00144.47 C ATOM 454 CG ARG 61 28.304 70.952 15.060 1.00144.47 C ATOM 455 CD ARG 61 28.869 69.542 15.208 1.00144.47 C ATOM 456 NE ARG 61 28.796 69.202 16.657 1.00144.47 N ATOM 457 CZ ARG 61 29.938 69.091 17.395 1.00144.47 C ATOM 458 NH1 ARG 61 31.154 69.187 16.784 1.00144.47 N ATOM 459 NH2 ARG 61 29.865 68.867 18.738 1.00144.47 N ATOM 460 C ARG 61 24.477 71.134 14.923 1.00144.47 C ATOM 461 O ARG 61 24.006 70.024 15.168 1.00144.47 O ATOM 462 N CYS 62 23.783 72.258 15.169 1.00 56.73 N ATOM 463 CA CYS 62 22.570 72.241 15.942 1.00 56.73 C ATOM 464 CB CYS 62 21.919 73.630 16.035 1.00 56.73 C ATOM 465 SG CYS 62 22.971 74.773 16.974 1.00 56.73 S ATOM 466 C CYS 62 21.556 71.276 15.399 1.00 56.73 C ATOM 467 O CYS 62 20.856 70.624 16.171 1.00 56.73 O ATOM 468 N PHE 63 21.419 71.166 14.070 1.00 64.94 N ATOM 469 CA PHE 63 20.453 70.282 13.471 1.00 64.94 C ATOM 470 CB PHE 63 20.334 70.475 11.948 1.00 64.94 C ATOM 471 CG PHE 63 19.174 69.671 11.467 1.00 64.94 C ATOM 472 CD1 PHE 63 17.906 70.209 11.467 1.00 64.94 C ATOM 473 CD2 PHE 63 19.346 68.382 11.015 1.00 64.94 C ATOM 474 CE1 PHE 63 16.830 69.474 11.026 1.00 64.94 C ATOM 475 CE2 PHE 63 18.272 67.643 10.573 1.00 64.94 C ATOM 476 CZ PHE 63 17.011 68.188 10.578 1.00 64.94 C ATOM 477 C PHE 63 20.832 68.844 13.705 1.00 64.94 C ATOM 478 O PHE 63 19.962 67.982 13.827 1.00 64.94 O ATOM 479 N GLU 64 22.148 68.557 13.787 1.00 83.49 N ATOM 480 CA GLU 64 22.682 67.220 13.749 1.00 83.49 C ATOM 481 CB GLU 64 24.211 67.174 13.914 1.00 83.49 C ATOM 482 CG GLU 64 24.983 67.748 12.727 1.00 83.49 C ATOM 483 CD GLU 64 26.464 67.617 13.045 1.00 83.49 C ATOM 484 OE1 GLU 64 26.857 67.979 14.186 1.00 83.49 O ATOM 485 OE2 GLU 64 27.218 67.141 12.157 1.00 83.49 O ATOM 486 C GLU 64 22.124 66.285 14.777 1.00 83.49 C ATOM 487 O GLU 64 21.734 65.183 14.395 1.00 83.49 O ATOM 488 N LEU 65 22.089 66.678 16.072 1.00104.92 N ATOM 489 CA LEU 65 21.610 65.868 17.172 1.00104.92 C ATOM 490 CB LEU 65 20.700 64.666 16.836 1.00104.92 C ATOM 491 CG LEU 65 19.376 65.081 16.169 1.00104.92 C ATOM 492 CD1 LEU 65 18.497 63.862 15.854 1.00104.92 C ATOM 493 CD2 LEU 65 18.641 66.135 17.012 1.00104.92 C ATOM 494 C LEU 65 22.797 65.360 17.932 1.00104.92 C ATOM 495 O LEU 65 23.917 65.830 17.746 1.00104.92 O ATOM 496 N GLN 66 22.565 64.382 18.832 1.00 56.15 N ATOM 497 CA GLN 66 23.610 63.874 19.672 1.00 56.15 C ATOM 498 CB GLN 66 23.100 62.874 20.721 1.00 56.15 C ATOM 499 CG GLN 66 24.181 62.366 21.670 1.00 56.15 C ATOM 500 CD GLN 66 23.481 61.566 22.756 1.00 56.15 C ATOM 501 OE1 GLN 66 22.255 61.600 22.872 1.00 56.15 O ATOM 502 NE2 GLN 66 24.276 60.836 23.581 1.00 56.15 N ATOM 503 C GLN 66 24.648 63.210 18.829 1.00 56.15 C ATOM 504 O GLN 66 24.338 62.457 17.907 1.00 56.15 O ATOM 505 N GLU 67 25.929 63.512 19.124 1.00 60.49 N ATOM 506 CA GLU 67 27.010 62.942 18.381 1.00 60.49 C ATOM 507 CB GLU 67 27.707 63.981 17.490 1.00 60.49 C ATOM 508 CG GLU 67 26.784 64.541 16.406 1.00 60.49 C ATOM 509 CD GLU 67 27.478 65.736 15.773 1.00 60.49 C ATOM 510 OE1 GLU 67 27.628 66.771 16.473 1.00 60.49 O ATOM 511 OE2 GLU 67 27.875 65.627 14.582 1.00 60.49 O ATOM 512 C GLU 67 28.016 62.451 19.369 1.00 60.49 C ATOM 513 O GLU 67 28.560 63.217 20.162 1.00 60.49 O ATOM 514 N VAL 68 28.272 61.135 19.341 1.00 90.20 N ATOM 515 CA VAL 68 29.217 60.521 20.222 1.00 90.20 C ATOM 516 CB VAL 68 29.168 59.020 20.170 1.00 90.20 C ATOM 517 CG1 VAL 68 29.598 58.547 18.771 1.00 90.20 C ATOM 518 CG2 VAL 68 30.036 58.466 21.311 1.00 90.20 C ATOM 519 C VAL 68 30.590 60.964 19.836 1.00 90.20 C ATOM 520 O VAL 68 31.469 61.121 20.682 1.00 90.20 O ATOM 521 N GLY 69 30.798 61.202 18.529 1.00 36.70 N ATOM 522 CA GLY 69 32.122 61.441 18.044 1.00 36.70 C ATOM 523 C GLY 69 32.765 62.606 18.722 1.00 36.70 C ATOM 524 O GLY 69 33.898 62.452 19.171 1.00 36.70 O ATOM 525 N PRO 70 32.157 63.759 18.815 1.00 82.65 N ATOM 526 CA PRO 70 32.877 64.826 19.470 1.00 82.65 C ATOM 527 CD PRO 70 31.406 64.248 17.669 1.00 82.65 C ATOM 528 CB PRO 70 32.318 66.128 18.905 1.00 82.65 C ATOM 529 CG PRO 70 31.799 65.727 17.514 1.00 82.65 C ATOM 530 C PRO 70 32.841 64.773 20.968 1.00 82.65 C ATOM 531 O PRO 70 31.735 64.769 21.508 1.00 82.65 O ATOM 532 N PRO 71 33.956 64.735 21.658 1.00165.76 N ATOM 533 CA PRO 71 33.910 64.836 23.091 1.00165.76 C ATOM 534 CD PRO 71 35.100 63.954 21.216 1.00165.76 C ATOM 535 CB PRO 71 35.207 64.224 23.613 1.00165.76 C ATOM 536 CG PRO 71 35.666 63.295 22.482 1.00165.76 C ATOM 537 C PRO 71 33.808 66.273 23.466 1.00165.76 C ATOM 538 O PRO 71 33.400 66.582 24.585 1.00165.76 O ATOM 539 N ASP 72 34.175 67.169 22.535 1.00110.78 N ATOM 540 CA ASP 72 34.286 68.548 22.884 1.00110.78 C ATOM 541 CB ASP 72 34.903 69.412 21.755 1.00110.78 C ATOM 542 CG ASP 72 34.222 69.203 20.403 1.00110.78 C ATOM 543 OD1 ASP 72 33.013 68.859 20.349 1.00110.78 O ATOM 544 OD2 ASP 72 34.937 69.391 19.382 1.00110.78 O ATOM 545 C ASP 72 32.983 69.078 23.370 1.00110.78 C ATOM 546 O ASP 72 32.939 69.765 24.390 1.00110.78 O ATOM 547 N CYS 73 31.870 68.759 22.695 1.00 53.92 N ATOM 548 CA CYS 73 30.650 69.287 23.209 1.00 53.92 C ATOM 549 CB CYS 73 30.594 70.820 23.139 1.00 53.92 C ATOM 550 SG CYS 73 30.856 71.409 21.446 1.00 53.92 S ATOM 551 C CYS 73 29.532 68.734 22.396 1.00 53.92 C ATOM 552 O CYS 73 29.748 68.176 21.320 1.00 53.92 O ATOM 553 N ARG 74 28.294 68.874 22.910 1.00152.51 N ATOM 554 CA ARG 74 27.167 68.355 22.199 1.00152.51 C ATOM 555 CB ARG 74 26.355 67.322 23.006 1.00152.51 C ATOM 556 CG ARG 74 27.224 66.197 23.574 1.00152.51 C ATOM 557 CD ARG 74 26.488 64.891 23.892 1.00152.51 C ATOM 558 NE ARG 74 25.286 65.196 24.716 1.00152.51 N ATOM 559 CZ ARG 74 24.079 65.379 24.100 1.00152.51 C ATOM 560 NH1 ARG 74 23.995 65.329 22.739 1.00152.51 N ATOM 561 NH2 ARG 74 22.954 65.587 24.844 1.00152.51 N ATOM 562 C ARG 74 26.255 69.501 21.876 1.00152.51 C ATOM 563 O ARG 74 26.032 70.392 22.694 1.00152.51 O ATOM 564 N CYS 75 25.788 69.530 20.614 1.00115.02 N ATOM 565 CA CYS 75 24.859 70.476 20.057 1.00115.02 C ATOM 566 CB CYS 75 25.001 70.625 18.529 1.00115.02 C ATOM 567 SG CYS 75 25.231 69.045 17.666 1.00115.02 S ATOM 568 C CYS 75 23.423 70.191 20.420 1.00115.02 C ATOM 569 O CYS 75 22.574 71.075 20.306 1.00115.02 O ATOM 570 N ASP 76 23.099 68.952 20.841 1.00 93.62 N ATOM 571 CA ASP 76 21.738 68.529 21.059 1.00 93.62 C ATOM 572 CB ASP 76 21.673 67.058 21.511 1.00 93.62 C ATOM 573 CG ASP 76 20.243 66.535 21.468 1.00 93.62 C ATOM 574 OD1 ASP 76 19.476 66.827 22.424 1.00 93.62 O ATOM 575 OD2 ASP 76 19.908 65.798 20.504 1.00 93.62 O ATOM 576 C ASP 76 21.055 69.396 22.078 1.00 93.62 C ATOM 577 O ASP 76 21.694 70.089 22.867 1.00 93.62 O ATOM 578 N ASN 77 19.702 69.398 22.029 1.00 62.85 N ATOM 579 CA ASN 77 18.829 70.168 22.874 1.00 62.85 C ATOM 580 CB ASN 77 17.350 70.010 22.483 1.00 62.85 C ATOM 581 CG ASN 77 17.152 70.642 21.110 1.00 62.85 C ATOM 582 OD1 ASN 77 17.939 71.482 20.678 1.00 62.85 O ATOM 583 ND2 ASN 77 16.065 70.231 20.403 1.00 62.85 N ATOM 584 C ASN 77 18.963 69.723 24.300 1.00 62.85 C ATOM 585 O ASN 77 18.929 70.543 25.216 1.00 62.85 O ATOM 586 N LEU 78 19.105 68.401 24.508 1.00122.24 N ATOM 587 CA LEU 78 19.201 67.772 25.796 1.00122.24 C ATOM 588 CB LEU 78 19.138 66.240 25.745 1.00122.24 C ATOM 589 CG LEU 78 17.746 65.685 25.395 1.00122.24 C ATOM 590 CD1 LEU 78 17.337 66.035 23.960 1.00122.24 C ATOM 591 CD2 LEU 78 17.660 64.181 25.689 1.00122.24 C ATOM 592 C LEU 78 20.479 68.149 26.476 1.00122.24 C ATOM 593 O LEU 78 20.598 68.035 27.695 1.00122.24 O ATOM 594 N CYS 79 21.461 68.638 25.702 1.00 73.20 N ATOM 595 CA CYS 79 22.810 68.837 26.153 1.00 73.20 C ATOM 596 CB CYS 79 23.664 69.640 25.167 1.00 73.20 C ATOM 597 SG CYS 79 23.122 71.370 25.105 1.00 73.20 S ATOM 598 C CYS 79 22.858 69.624 27.428 1.00 73.20 C ATOM 599 O CYS 79 23.731 69.367 28.251 1.00 73.20 O ATOM 600 N LYS 80 21.954 70.596 27.648 1.00118.35 N ATOM 601 CA LYS 80 22.049 71.417 28.826 1.00118.35 C ATOM 602 CB LYS 80 20.882 72.411 28.945 1.00118.35 C ATOM 603 CG LYS 80 20.992 73.620 28.011 1.00118.35 C ATOM 604 CD LYS 80 22.124 74.578 28.387 1.00118.35 C ATOM 605 CE LYS 80 23.525 74.070 28.047 1.00118.35 C ATOM 606 NZ LYS 80 24.531 75.066 28.480 1.00118.35 N ATOM 607 C LYS 80 22.029 70.554 30.051 1.00118.35 C ATOM 608 O LYS 80 22.789 70.790 30.990 1.00118.35 O ATOM 609 N SER 81 21.167 69.524 30.082 1.00 26.66 N ATOM 610 CA SER 81 21.102 68.685 31.243 1.00 26.66 C ATOM 611 CB SER 81 20.072 67.552 31.093 1.00 26.66 C ATOM 612 OG SER 81 20.455 66.687 30.034 1.00 26.66 O ATOM 613 C SER 81 22.444 68.053 31.429 1.00 26.66 C ATOM 614 O SER 81 22.949 67.961 32.546 1.00 26.66 O ATOM 615 N TYR 82 23.055 67.621 30.312 1.00 58.21 N ATOM 616 CA TYR 82 24.338 66.980 30.291 1.00 58.21 C ATOM 617 CB TYR 82 24.768 66.511 28.890 1.00 58.21 C ATOM 618 CG TYR 82 23.919 65.354 28.478 1.00 58.21 C ATOM 619 CD1 TYR 82 22.675 65.551 27.928 1.00 58.21 C ATOM 620 CD2 TYR 82 24.377 64.066 28.638 1.00 58.21 C ATOM 621 CE1 TYR 82 21.898 64.483 27.546 1.00 58.21 C ATOM 622 CE2 TYR 82 23.606 62.991 28.259 1.00 58.21 C ATOM 623 CZ TYR 82 22.363 63.199 27.710 1.00 58.21 C ATOM 624 OH TYR 82 21.562 62.106 27.316 1.00 58.21 O ATOM 625 C TYR 82 25.374 67.951 30.761 1.00 58.21 C ATOM 626 O TYR 82 26.313 67.576 31.460 1.00 58.21 O ATOM 627 N SER 83 25.208 69.239 30.402 1.00 59.05 N ATOM 628 CA SER 83 26.180 70.251 30.687 1.00 59.05 C ATOM 629 CB SER 83 26.685 70.208 32.139 1.00 59.05 C ATOM 630 OG SER 83 25.613 70.475 33.031 1.00 59.05 O ATOM 631 C SER 83 27.343 70.017 29.769 1.00 59.05 C ATOM 632 O SER 83 28.434 70.548 29.973 1.00 59.05 O ATOM 633 N SER 84 27.112 69.187 28.731 1.00109.37 N ATOM 634 CA SER 84 28.045 68.853 27.688 1.00109.37 C ATOM 635 CB SER 84 27.657 67.579 26.919 1.00109.37 C ATOM 636 OG SER 84 27.691 66.446 27.771 1.00109.37 O ATOM 637 C SER 84 28.075 69.933 26.648 1.00109.37 C ATOM 638 O SER 84 28.901 69.892 25.738 1.00109.37 O ATOM 639 N CYS 85 27.172 70.926 26.730 1.00103.08 N ATOM 640 CA CYS 85 27.076 71.855 25.639 1.00103.08 C ATOM 641 CB CYS 85 25.836 72.764 25.632 1.00103.08 C ATOM 642 SG CYS 85 24.702 72.324 24.279 1.00103.08 S ATOM 643 C CYS 85 28.293 72.680 25.395 1.00103.08 C ATOM 644 O CYS 85 29.084 72.977 26.288 1.00103.08 O ATOM 645 N CYS 86 28.457 73.033 24.100 1.00 60.58 N ATOM 646 CA CYS 86 29.520 73.857 23.613 1.00 60.58 C ATOM 647 CB CYS 86 29.496 74.049 22.085 1.00 60.58 C ATOM 648 SG CYS 86 29.214 72.540 21.111 1.00 60.58 S ATOM 649 C CYS 86 29.210 75.214 24.147 1.00 60.58 C ATOM 650 O CYS 86 28.051 75.529 24.412 1.00 60.58 O ATOM 651 N HIS 87 30.239 76.057 24.333 1.00 54.64 N ATOM 652 CA HIS 87 29.988 77.373 24.837 1.00 54.64 C ATOM 653 ND1 HIS 87 33.168 77.045 23.905 1.00 54.64 N ATOM 654 CG HIS 87 32.321 78.109 24.097 1.00 54.64 C ATOM 655 CB HIS 87 31.272 78.155 25.164 1.00 54.64 C ATOM 656 NE2 HIS 87 33.734 78.583 22.405 1.00 54.64 N ATOM 657 CD2 HIS 87 32.682 79.041 23.174 1.00 54.64 C ATOM 658 CE1 HIS 87 33.994 77.380 22.881 1.00 54.64 C ATOM 659 C HIS 87 29.185 78.132 23.825 1.00 54.64 C ATOM 660 O HIS 87 28.273 78.878 24.177 1.00 54.64 O ATOM 661 N ASP 88 29.505 77.929 22.536 1.00 57.03 N ATOM 662 CA ASP 88 28.900 78.587 21.407 1.00 57.03 C ATOM 663 CB ASP 88 29.644 78.306 20.092 1.00 57.03 C ATOM 664 CG ASP 88 30.974 79.042 20.151 1.00 57.03 C ATOM 665 OD1 ASP 88 31.127 79.904 21.054 1.00 57.03 O ATOM 666 OD2 ASP 88 31.849 78.762 19.289 1.00 57.03 O ATOM 667 C ASP 88 27.474 78.150 21.231 1.00 57.03 C ATOM 668 O ASP 88 26.696 78.807 20.540 1.00 57.03 O ATOM 669 N PHE 89 27.089 77.027 21.862 1.00 82.63 N ATOM 670 CA PHE 89 25.818 76.390 21.644 1.00 82.63 C ATOM 671 CB PHE 89 25.590 75.236 22.638 1.00 82.63 C ATOM 672 CG PHE 89 24.166 74.785 22.587 1.00 82.63 C ATOM 673 CD1 PHE 89 23.727 73.900 21.629 1.00 82.63 C ATOM 674 CD2 PHE 89 23.268 75.244 23.525 1.00 82.63 C ATOM 675 CE1 PHE 89 22.413 73.491 21.606 1.00 82.63 C ATOM 676 CE2 PHE 89 21.955 74.838 23.508 1.00 82.63 C ATOM 677 CZ PHE 89 21.523 73.960 22.543 1.00 82.63 C ATOM 678 C PHE 89 24.646 77.317 21.778 1.00 82.63 C ATOM 679 O PHE 89 23.803 77.351 20.883 1.00 82.63 O ATOM 680 N ASP 90 24.545 78.108 22.860 1.00 49.53 N ATOM 681 CA ASP 90 23.335 78.862 23.052 1.00 49.53 C ATOM 682 CB ASP 90 23.375 79.715 24.332 1.00 49.53 C ATOM 683 CG ASP 90 23.356 78.768 25.524 1.00 49.53 C ATOM 684 OD1 ASP 90 22.753 77.669 25.397 1.00 49.53 O ATOM 685 OD2 ASP 90 23.950 79.130 26.574 1.00 49.53 O ATOM 686 C ASP 90 23.080 79.789 21.911 1.00 49.53 C ATOM 687 O ASP 90 21.992 79.787 21.338 1.00 49.53 O ATOM 688 N GLU 91 24.078 80.604 21.538 1.00 79.93 N ATOM 689 CA GLU 91 23.836 81.560 20.504 1.00 79.93 C ATOM 690 CB GLU 91 24.954 82.606 20.396 1.00 79.93 C ATOM 691 CG GLU 91 24.550 83.831 19.573 1.00 79.93 C ATOM 692 CD GLU 91 25.567 84.927 19.849 1.00 79.93 C ATOM 693 OE1 GLU 91 25.490 85.537 20.952 1.00 79.93 O ATOM 694 OE2 GLU 91 26.436 85.168 18.971 1.00 79.93 O ATOM 695 C GLU 91 23.671 80.878 19.181 1.00 79.93 C ATOM 696 O GLU 91 22.802 81.246 18.392 1.00 79.93 O ATOM 697 N LEU 92 24.489 79.846 18.915 1.00 51.53 N ATOM 698 CA LEU 92 24.492 79.233 17.618 1.00 51.53 C ATOM 699 CB LEU 92 25.579 78.158 17.485 1.00 51.53 C ATOM 700 CG LEU 92 27.003 78.733 17.594 1.00 51.53 C ATOM 701 CD1 LEU 92 28.066 77.633 17.455 1.00 51.53 C ATOM 702 CD2 LEU 92 27.217 79.892 16.609 1.00 51.53 C ATOM 703 C LEU 92 23.178 78.600 17.296 1.00 51.53 C ATOM 704 O LEU 92 22.629 78.823 16.218 1.00 51.53 O ATOM 705 N CYS 93 22.607 77.809 18.219 1.00 58.43 N ATOM 706 CA CYS 93 21.402 77.150 17.829 1.00 58.43 C ATOM 707 CB CYS 93 20.952 76.050 18.802 1.00 58.43 C ATOM 708 SG CYS 93 22.192 74.725 18.848 1.00 58.43 S ATOM 709 C CYS 93 20.322 78.155 17.682 1.00 58.43 C ATOM 710 O CYS 93 20.042 78.945 18.583 1.00 58.43 O ATOM 711 N LEU 94 19.692 78.150 16.496 1.00 67.64 N ATOM 712 CA LEU 94 18.615 79.049 16.243 1.00 67.64 C ATOM 713 CB LEU 94 18.936 80.126 15.197 1.00 67.64 C ATOM 714 CG LEU 94 20.023 81.110 15.668 1.00 67.64 C ATOM 715 CD1 LEU 94 20.260 82.220 14.632 1.00 67.64 C ATOM 716 CD2 LEU 94 19.707 81.657 17.071 1.00 67.64 C ATOM 717 C LEU 94 17.506 78.201 15.731 1.00 67.64 C ATOM 718 O LEU 94 17.710 77.013 15.490 1.00 67.64 O ATOM 719 N LYS 95 16.288 78.765 15.585 1.00192.70 N ATOM 720 CA LYS 95 15.244 77.922 15.077 1.00192.70 C ATOM 721 CB LYS 95 13.869 78.598 14.953 1.00192.70 C ATOM 722 CG LYS 95 13.131 78.679 16.288 1.00192.70 C ATOM 723 CD LYS 95 12.790 77.305 16.875 1.00192.70 C ATOM 724 CE LYS 95 11.337 76.880 16.647 1.00192.70 C ATOM 725 NZ LYS 95 11.050 76.780 15.198 1.00192.70 N ATOM 726 C LYS 95 15.673 77.469 13.719 1.00192.70 C ATOM 727 O LYS 95 15.778 78.278 12.796 1.00192.70 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 61.12 61.5 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 60.04 64.3 56 100.0 56 ARMSMC BURIED . . . . . . . . 63.79 54.5 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 66.81 63.9 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 64.37 65.7 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 53.07 72.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 90.58 45.5 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 39.23 60.9 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 38.80 58.8 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 43.13 55.6 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 19.57 80.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 97.35 11.1 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 100.41 12.5 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 103.55 0.0 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 71.52 50.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 81.30 40.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 81.30 40.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 81.08 50.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 82.15 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.28 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.28 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.0570 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 2.55 29 100.0 29 CRMSCA BURIED . . . . . . . . 1.31 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.42 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 2.68 142 100.0 142 CRMSMC BURIED . . . . . . . . 1.57 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 4.52 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 4.27 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 5.04 103 100.0 103 CRMSSC BURIED . . . . . . . . 2.76 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.50 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 3.89 219 100.0 219 CRMSALL BURIED . . . . . . . . 2.16 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 78.771 0.952 0.954 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 77.139 0.944 0.947 29 100.0 29 ERRCA BURIED . . . . . . . . 83.072 0.972 0.973 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 79.354 0.951 0.953 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 77.983 0.945 0.947 142 100.0 142 ERRMC BURIED . . . . . . . . 82.895 0.968 0.968 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 84.012 0.918 0.924 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 86.194 0.926 0.931 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 81.830 0.905 0.913 103 100.0 103 ERRSC BURIED . . . . . . . . 89.629 0.952 0.953 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 81.264 0.937 0.940 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 79.400 0.928 0.932 219 100.0 219 ERRALL BURIED . . . . . . . . 86.123 0.960 0.962 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 15 29 32 38 40 40 40 DISTCA CA (P) 37.50 72.50 80.00 95.00 100.00 40 DISTCA CA (RMS) 0.75 1.00 1.20 1.88 2.28 DISTCA ALL (N) 81 188 224 266 294 303 303 DISTALL ALL (P) 26.73 62.05 73.93 87.79 97.03 303 DISTALL ALL (RMS) 0.74 1.14 1.43 2.02 2.95 DISTALL END of the results output