####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 26 ( 205), selected 26 , name T0543TS481_1_2-D4 # Molecule2: number of CA atoms 312 ( 2539), selected 26 , name T0543-D4.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS481_1_2-D4.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 550 - 566 4.98 19.89 LCS_AVERAGE: 4.89 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 545 - 552 1.78 21.24 LCS_AVERAGE: 2.08 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 4 542 - 545 0.31 33.71 LONGEST_CONTINUOUS_SEGMENT: 4 545 - 548 0.86 20.02 LONGEST_CONTINUOUS_SEGMENT: 4 547 - 550 0.56 26.13 LONGEST_CONTINUOUS_SEGMENT: 4 554 - 557 0.96 20.07 LCS_AVERAGE: 1.12 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 26 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT P 541 P 541 3 5 12 3 3 4 4 4 5 5 5 6 7 7 7 7 8 8 8 8 11 11 12 LCS_GDT T 542 T 542 4 6 12 4 4 4 4 5 6 6 8 9 11 11 11 11 11 11 12 12 12 12 12 LCS_GDT M 543 M 543 4 6 12 4 4 5 5 7 7 8 10 10 11 11 11 11 11 11 12 12 12 12 12 LCS_GDT P 544 P 544 4 6 12 4 4 5 5 7 7 8 10 10 11 11 11 11 11 11 12 12 12 12 12 LCS_GDT D 545 D 545 4 8 12 4 4 5 7 7 8 8 10 10 11 11 11 11 11 11 12 12 12 12 12 LCS_GDT E 546 E 546 4 8 12 3 3 5 7 7 8 8 10 10 11 11 11 11 11 11 12 12 12 12 12 LCS_GDT V 547 V 547 4 8 12 3 4 5 7 7 8 8 10 10 11 11 11 11 11 11 12 12 12 12 12 LCS_GDT S 548 S 548 4 8 12 3 4 5 7 7 8 8 10 10 11 11 11 11 11 11 12 13 14 15 16 LCS_GDT R 549 R 549 4 8 12 3 4 5 7 7 8 8 10 10 11 11 11 11 11 11 14 14 15 16 17 LCS_GDT P 550 P 550 4 8 17 3 4 4 6 6 8 8 10 10 11 12 13 14 15 16 17 17 17 17 17 LCS_GDT N 551 N 551 3 8 17 3 4 5 7 7 8 8 10 10 11 13 14 15 16 16 17 17 17 17 17 LCS_GDT Y 552 Y 552 3 8 17 3 4 5 7 7 8 8 10 10 11 13 13 14 16 16 17 17 17 17 17 LCS_GDT P 553 P 553 3 7 17 3 4 5 5 6 7 8 8 9 11 13 14 15 16 16 17 17 17 17 17 LCS_GDT G 554 G 554 4 7 17 3 4 5 5 6 7 8 8 9 11 13 14 15 16 16 17 17 17 17 17 LCS_GDT I 555 I 555 4 7 17 3 3 5 5 6 7 8 9 11 12 13 14 15 16 16 17 17 17 17 17 LCS_GDT M 556 M 556 4 7 17 3 4 5 5 6 7 8 9 11 12 13 14 15 16 16 17 17 17 17 17 LCS_GDT Y 557 Y 557 4 7 17 3 4 5 5 6 7 8 9 11 12 13 14 15 16 16 17 17 17 17 17 LCS_GDT L 558 L 558 3 7 17 3 3 4 5 6 7 8 9 11 12 13 14 15 16 16 17 17 17 17 17 LCS_GDT Q 559 Q 559 3 5 17 3 3 4 4 5 5 7 9 11 12 13 14 15 16 16 17 17 17 17 17 LCS_GDT S 560 S 560 3 5 17 3 3 4 4 4 5 7 7 10 12 12 14 15 16 16 17 17 17 17 17 LCS_GDT E 561 E 561 3 5 17 3 3 3 4 5 5 7 9 11 12 13 14 15 16 16 17 17 17 17 17 LCS_GDT F 562 F 562 3 5 17 3 3 4 4 6 6 8 9 11 12 13 14 15 16 16 17 17 17 17 17 LCS_GDT D 563 D 563 3 5 17 3 3 3 4 5 5 7 9 11 12 13 14 15 16 16 17 17 17 17 17 LCS_GDT L 564 L 564 3 5 17 3 3 3 4 4 5 6 9 11 12 12 14 15 16 16 17 17 17 17 17 LCS_GDT G 565 G 565 3 5 17 3 3 3 4 4 5 6 9 11 12 12 13 15 16 16 17 17 17 17 17 LCS_GDT C 566 C 566 3 5 17 0 3 3 4 4 5 6 7 11 12 13 14 15 16 16 17 17 17 17 17 LCS_AVERAGE LCS_A: 2.70 ( 1.12 2.08 4.89 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 4 5 7 7 8 8 10 11 12 13 14 15 16 16 17 17 17 17 17 GDT PERCENT_AT 1.28 1.28 1.60 2.24 2.24 2.56 2.56 3.21 3.53 3.85 4.17 4.49 4.81 5.13 5.13 5.45 5.45 5.45 5.45 5.45 GDT RMS_LOCAL 0.31 0.31 0.79 1.39 1.39 1.78 1.78 2.68 3.51 3.67 4.01 4.28 4.45 4.67 4.67 4.98 4.98 4.98 4.98 4.98 GDT RMS_ALL_AT 33.71 33.71 22.40 20.58 20.58 21.24 21.24 18.39 19.51 19.50 20.75 20.27 20.36 20.90 20.90 19.89 19.89 19.89 19.89 19.89 # Checking swapping # possible swapping detected: D 545 D 545 # possible swapping detected: E 546 E 546 # possible swapping detected: F 562 F 562 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA P 541 P 541 13.444 0 0.075 0.367 17.050 0.000 0.000 LGA T 542 T 542 7.131 0 0.226 1.274 9.537 11.310 9.592 LGA M 543 M 543 2.240 0 0.052 0.773 9.416 65.238 46.071 LGA P 544 P 544 2.485 0 0.078 0.142 6.151 67.381 49.184 LGA D 545 D 545 3.718 0 0.415 1.181 9.472 59.762 33.155 LGA E 546 E 546 3.727 0 0.041 1.193 9.899 46.905 25.397 LGA V 547 V 547 0.805 0 0.578 1.303 2.792 75.476 75.714 LGA S 548 S 548 2.541 0 0.106 0.143 5.177 77.857 63.492 LGA R 549 R 549 1.367 0 0.242 0.889 7.524 64.048 39.870 LGA P 550 P 550 3.435 0 0.268 0.707 6.333 69.405 51.156 LGA N 551 N 551 0.892 0 0.552 1.164 4.873 84.048 67.798 LGA Y 552 Y 552 3.353 0 0.578 0.857 11.705 34.643 18.532 LGA P 553 P 553 9.194 0 0.284 0.448 11.806 3.690 7.347 LGA G 554 G 554 14.888 0 0.251 0.251 15.842 0.000 0.000 LGA I 555 I 555 19.067 0 0.079 0.452 20.991 0.000 0.000 LGA M 556 M 556 22.667 0 0.598 1.070 25.687 0.000 0.000 LGA Y 557 Y 557 27.839 0 0.091 1.473 30.264 0.000 0.000 LGA L 558 L 558 31.192 0 0.629 1.394 35.770 0.000 0.000 LGA Q 559 Q 559 27.557 0 0.482 0.536 28.698 0.000 0.000 LGA S 560 S 560 29.798 0 0.775 0.735 32.383 0.000 0.000 LGA E 561 E 561 24.910 0 0.724 1.247 26.246 0.000 0.000 LGA F 562 F 562 24.932 0 0.511 1.417 28.616 0.000 0.000 LGA D 563 D 563 26.918 0 0.279 1.231 29.909 0.000 0.000 LGA L 564 L 564 24.653 0 0.262 1.059 25.782 0.000 0.000 LGA G 565 G 565 26.471 0 0.644 0.644 26.471 0.000 0.000 LGA C 566 C 566 25.288 0 0.216 0.308 28.526 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 26 104 104 100.00 205 205 100.00 312 SUMMARY(RMSD_GDC): 12.284 12.181 12.659 2.115 1.562 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 26 312 4.0 10 2.68 3.045 2.814 0.360 LGA_LOCAL RMSD: 2.678 Number of atoms: 10 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 18.394 Number of assigned atoms: 26 Std_ASGN_ATOMS RMSD: 12.284 Standard rmsd on all 26 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.097412 * X + 0.906711 * Y + -0.410348 * Z + -40.630543 Y_new = 0.131964 * X + 0.396901 * Y + 0.908325 * Z + -47.231823 Z_new = 0.986457 * X + -0.142632 * Y + -0.080990 * Z + 17.208588 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.934909 -1.406029 -2.087221 [DEG: 53.5664 -80.5595 -119.5889 ] ZXZ: -2.717273 1.651875 1.714392 [DEG: -155.6883 94.6455 98.2274 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS481_1_2-D4 REMARK 2: T0543-D4.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS481_1_2-D4.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 26 312 4.0 10 2.68 2.814 12.28 REMARK ---------------------------------------------------------- MOLECULE T0543TS481_1_2-D4 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 2 REMARK PFRMAT TS REMARK TARGET T0543 REMARK PARENT 2RH6_A ATOM 4322 N PRO 541 -15.199 30.740 23.056 1.00 0.00 N ATOM 4323 CA PRO 541 -13.924 30.831 22.376 1.00 0.00 C ATOM 4324 CD PRO 541 -15.321 29.511 23.802 1.00 0.00 C ATOM 4325 CB PRO 541 -13.180 29.536 22.666 1.00 0.00 C ATOM 4326 CG PRO 541 -13.906 28.943 23.871 1.00 0.00 C ATOM 4327 C PRO 541 -13.840 31.203 20.936 1.00 0.00 C ATOM 4328 O PRO 541 -14.825 31.159 20.225 1.00 0.00 O ATOM 4329 N THR 542 -12.660 31.751 20.597 1.00 0.00 N ATOM 4330 CA THR 542 -12.043 32.394 19.490 1.00 0.00 C ATOM 4331 CB THR 542 -11.847 33.897 19.659 1.00 0.00 C ATOM 4332 OG1 THR 542 -11.449 34.521 18.453 1.00 0.00 O ATOM 4333 CG2 THR 542 -10.784 34.225 20.717 1.00 0.00 C ATOM 4334 C THR 542 -10.677 31.855 19.561 1.00 0.00 C ATOM 4335 O THR 542 -10.427 30.905 20.304 1.00 0.00 O ATOM 4336 N MET 543 -9.802 32.469 18.764 1.00 0.00 N ATOM 4337 CA MET 543 -8.431 32.170 18.591 1.00 0.00 C ATOM 4338 CB MET 543 -7.697 33.434 18.128 1.00 0.00 C ATOM 4339 CG MET 543 -6.244 33.249 17.726 1.00 0.00 C ATOM 4340 SD MET 543 -5.453 34.756 17.118 1.00 0.00 S ATOM 4341 CE MET 543 -3.899 33.911 16.718 1.00 0.00 C ATOM 4342 C MET 543 -7.877 31.726 19.888 1.00 0.00 C ATOM 4343 O MET 543 -8.025 32.290 20.969 1.00 0.00 O ATOM 4344 N PRO 544 -7.246 30.640 19.676 1.00 0.00 N ATOM 4345 CA PRO 544 -6.673 29.822 20.682 1.00 0.00 C ATOM 4346 CD PRO 544 -6.727 30.348 18.354 1.00 0.00 C ATOM 4347 CB PRO 544 -5.821 28.804 19.932 1.00 0.00 C ATOM 4348 CG PRO 544 -5.493 29.488 18.600 1.00 0.00 C ATOM 4349 C PRO 544 -5.839 30.529 21.667 1.00 0.00 C ATOM 4350 O PRO 544 -5.129 31.470 21.326 1.00 0.00 O ATOM 4351 N ASP 545 -5.964 30.092 22.920 1.00 0.00 N ATOM 4352 CA ASP 545 -5.078 30.531 23.924 1.00 0.00 C ATOM 4353 CB ASP 545 -5.581 31.742 24.714 1.00 0.00 C ATOM 4354 CG ASP 545 -4.338 32.353 25.328 1.00 0.00 C ATOM 4355 OD1 ASP 545 -3.250 31.742 25.157 1.00 0.00 O ATOM 4356 OD2 ASP 545 -4.451 33.435 25.961 1.00 0.00 O ATOM 4357 C ASP 545 -4.996 29.381 24.851 1.00 0.00 C ATOM 4358 O ASP 545 -4.229 28.447 24.647 1.00 0.00 O ATOM 4359 N GLU 546 -5.879 29.403 25.855 1.00 0.00 N ATOM 4360 CA GLU 546 -5.877 28.475 26.936 1.00 0.00 C ATOM 4361 CB GLU 546 -6.840 28.886 28.052 1.00 0.00 C ATOM 4362 CG GLU 546 -6.279 30.058 28.863 1.00 0.00 C ATOM 4363 CD GLU 546 -6.062 31.254 27.945 1.00 0.00 C ATOM 4364 OE1 GLU 546 -7.017 31.610 27.203 1.00 0.00 O ATOM 4365 OE2 GLU 546 -4.930 31.807 27.951 1.00 0.00 O ATOM 4366 C GLU 546 -6.136 27.093 26.460 1.00 0.00 C ATOM 4367 O GLU 546 -6.975 26.823 25.603 1.00 0.00 O ATOM 4368 N VAL 547 -5.398 26.166 27.081 1.00 0.00 N ATOM 4369 CA VAL 547 -5.305 24.839 26.599 1.00 0.00 C ATOM 4370 CB VAL 547 -3.945 24.289 26.850 1.00 0.00 C ATOM 4371 CG1 VAL 547 -2.968 24.950 25.871 1.00 0.00 C ATOM 4372 CG2 VAL 547 -3.590 24.650 28.301 1.00 0.00 C ATOM 4373 C VAL 547 -6.287 23.870 27.150 1.00 0.00 C ATOM 4374 O VAL 547 -6.356 23.595 28.341 1.00 0.00 O ATOM 4375 N SER 548 -7.097 23.377 26.209 1.00 0.00 N ATOM 4376 CA SER 548 -7.807 22.141 26.227 1.00 0.00 C ATOM 4377 CB SER 548 -6.852 21.078 26.514 1.00 0.00 C ATOM 4378 OG SER 548 -6.008 21.159 25.394 1.00 0.00 O ATOM 4379 C SER 548 -8.951 21.874 27.068 1.00 0.00 C ATOM 4380 O SER 548 -8.937 22.437 28.153 1.00 0.00 O ATOM 4381 N ARG 549 -9.800 20.902 26.523 1.00 0.00 N ATOM 4382 CA ARG 549 -11.050 20.199 26.818 1.00 0.00 C ATOM 4383 CB ARG 549 -12.318 20.588 26.058 1.00 0.00 C ATOM 4384 CG ARG 549 -13.508 19.739 26.445 1.00 0.00 C ATOM 4385 CD ARG 549 -14.875 20.393 26.514 1.00 0.00 C ATOM 4386 NE ARG 549 -15.822 19.261 26.706 1.00 0.00 N ATOM 4387 CZ ARG 549 -17.176 19.428 26.701 1.00 0.00 C ATOM 4388 NH1 ARG 549 -17.734 20.668 26.679 1.00 0.00 H ATOM 4389 NH2 ARG 549 -17.992 18.338 26.723 1.00 0.00 H ATOM 4390 C ARG 549 -11.170 18.746 26.602 1.00 0.00 C ATOM 4391 O ARG 549 -11.463 18.239 25.525 1.00 0.00 O ATOM 4392 N PRO 550 -11.048 18.086 27.672 1.00 0.00 N ATOM 4393 CA PRO 550 -11.957 17.008 27.921 1.00 0.00 C ATOM 4394 CD PRO 550 -9.691 17.627 27.875 1.00 0.00 C ATOM 4395 CB PRO 550 -11.189 15.908 28.552 1.00 0.00 C ATOM 4396 CG PRO 550 -9.760 16.120 28.067 1.00 0.00 C ATOM 4397 C PRO 550 -13.193 17.252 28.747 1.00 0.00 C ATOM 4398 O PRO 550 -13.969 18.174 28.557 1.00 0.00 O ATOM 4399 N ASN 551 -13.316 16.396 29.752 1.00 0.00 N ATOM 4400 CA ASN 551 -14.513 16.020 30.440 1.00 0.00 C ATOM 4401 CB ASN 551 -14.250 15.190 31.618 1.00 0.00 C ATOM 4402 CG ASN 551 -14.281 13.890 30.965 1.00 0.00 C ATOM 4403 OD1 ASN 551 -14.651 13.015 31.737 1.00 0.00 O ATOM 4404 ND2 ASN 551 -13.906 13.782 29.657 1.00 0.00 N ATOM 4405 C ASN 551 -15.475 16.983 31.044 1.00 0.00 C ATOM 4406 O ASN 551 -16.653 17.083 30.714 1.00 0.00 O ATOM 4407 N TYR 552 -15.048 17.708 32.030 1.00 0.00 N ATOM 4408 CA TYR 552 -16.002 18.526 32.649 1.00 0.00 C ATOM 4409 CB TYR 552 -16.199 18.146 34.133 1.00 0.00 C ATOM 4410 CG TYR 552 -15.801 16.729 34.274 1.00 0.00 C ATOM 4411 CD1 TYR 552 -16.462 15.685 33.715 1.00 0.00 C ATOM 4412 CD2 TYR 552 -14.668 16.440 34.960 1.00 0.00 C ATOM 4413 CE1 TYR 552 -15.972 14.424 33.904 1.00 0.00 C ATOM 4414 CE2 TYR 552 -14.178 15.178 35.138 1.00 0.00 C ATOM 4415 CZ TYR 552 -14.843 14.130 34.605 1.00 0.00 C ATOM 4416 OH TYR 552 -14.376 12.810 34.773 1.00 0.00 H ATOM 4417 C TYR 552 -15.425 19.876 32.366 1.00 0.00 C ATOM 4418 O TYR 552 -15.014 20.025 31.217 1.00 0.00 O ATOM 4419 N PRO 553 -15.268 20.868 33.187 1.00 0.00 N ATOM 4420 CA PRO 553 -14.959 22.112 32.601 1.00 0.00 C ATOM 4421 CD PRO 553 -16.063 21.103 34.381 1.00 0.00 C ATOM 4422 CB PRO 553 -15.114 23.172 33.679 1.00 0.00 C ATOM 4423 CG PRO 553 -15.465 22.396 34.941 1.00 0.00 C ATOM 4424 C PRO 553 -13.929 22.561 31.647 1.00 0.00 C ATOM 4425 O PRO 553 -12.794 22.847 32.006 1.00 0.00 O ATOM 4426 N GLY 554 -14.473 22.737 30.442 1.00 0.00 N ATOM 4427 CA GLY 554 -14.155 23.594 29.356 1.00 0.00 C ATOM 4428 C GLY 554 -15.260 23.791 28.324 1.00 0.00 C ATOM 4429 O GLY 554 -15.601 22.892 27.568 1.00 0.00 O ATOM 4430 N ILE 555 -15.841 25.018 28.354 1.00 0.00 N ATOM 4431 CA ILE 555 -16.867 25.742 27.636 1.00 0.00 C ATOM 4432 CB ILE 555 -18.169 24.999 27.373 1.00 0.00 C ATOM 4433 CG2 ILE 555 -19.146 25.886 26.583 1.00 0.00 C ATOM 4434 CG1 ILE 555 -18.033 23.697 26.621 1.00 0.00 C ATOM 4435 CD1 ILE 555 -19.393 23.006 26.601 1.00 0.00 C ATOM 4436 C ILE 555 -17.368 26.740 28.663 1.00 0.00 C ATOM 4437 O ILE 555 -18.513 26.653 29.073 1.00 0.00 O ATOM 4438 N MET 556 -16.558 27.704 29.137 1.00 0.00 N ATOM 4439 CA MET 556 -16.863 28.799 30.045 1.00 0.00 C ATOM 4440 CB MET 556 -17.006 28.587 31.538 1.00 0.00 C ATOM 4441 CG MET 556 -17.322 29.927 32.158 1.00 0.00 C ATOM 4442 SD MET 556 -18.024 29.890 33.811 1.00 0.00 S ATOM 4443 CE MET 556 -17.964 31.699 33.715 1.00 0.00 C ATOM 4444 C MET 556 -15.685 29.700 30.159 1.00 0.00 C ATOM 4445 O MET 556 -14.629 29.300 30.639 1.00 0.00 O ATOM 4446 N TYR 557 -15.840 30.967 29.774 1.00 0.00 N ATOM 4447 CA TYR 557 -14.719 31.853 29.781 1.00 0.00 C ATOM 4448 CB TYR 557 -14.830 32.959 28.726 1.00 0.00 C ATOM 4449 CG TYR 557 -13.883 34.051 29.098 1.00 0.00 C ATOM 4450 CD1 TYR 557 -12.533 33.953 28.850 1.00 0.00 C ATOM 4451 CD2 TYR 557 -14.359 35.194 29.698 1.00 0.00 C ATOM 4452 CE1 TYR 557 -11.680 34.978 29.196 1.00 0.00 C ATOM 4453 CE2 TYR 557 -13.512 36.221 30.045 1.00 0.00 C ATOM 4454 CZ TYR 557 -12.168 36.117 29.793 1.00 0.00 C ATOM 4455 OH TYR 557 -11.296 37.170 30.146 1.00 0.00 H ATOM 4456 C TYR 557 -14.559 32.555 31.085 1.00 0.00 C ATOM 4457 O TYR 557 -15.520 32.917 31.746 1.00 0.00 O ATOM 4458 N LEU 558 -13.303 32.711 31.520 1.00 0.00 N ATOM 4459 CA LEU 558 -12.974 33.525 32.650 1.00 0.00 C ATOM 4460 CB LEU 558 -13.720 34.873 32.652 1.00 0.00 C ATOM 4461 CG LEU 558 -13.343 35.864 33.778 1.00 0.00 C ATOM 4462 CD1 LEU 558 -13.849 35.431 35.161 1.00 0.00 C ATOM 4463 CD2 LEU 558 -11.841 36.173 33.771 1.00 0.00 C ATOM 4464 C LEU 558 -13.323 32.820 33.897 1.00 0.00 C ATOM 4465 O LEU 558 -12.640 32.982 34.903 1.00 0.00 O ATOM 4466 N GLN 559 -14.346 31.955 33.895 1.00 0.00 N ATOM 4467 CA GLN 559 -14.456 31.339 35.167 1.00 0.00 C ATOM 4468 CB GLN 559 -15.856 31.004 35.645 1.00 0.00 C ATOM 4469 CG GLN 559 -15.896 30.597 37.109 1.00 0.00 C ATOM 4470 CD GLN 559 -15.819 31.884 37.912 1.00 0.00 C ATOM 4471 OE1 GLN 559 -15.643 32.970 37.363 1.00 0.00 O ATOM 4472 NE2 GLN 559 -15.963 31.766 39.256 1.00 0.00 N ATOM 4473 C GLN 559 -13.762 30.086 34.980 1.00 0.00 C ATOM 4474 O GLN 559 -14.279 28.998 35.211 1.00 0.00 O ATOM 4475 N SER 560 -12.500 30.218 34.574 1.00 0.00 N ATOM 4476 CA SER 560 -11.819 28.998 34.519 1.00 0.00 C ATOM 4477 CB SER 560 -10.452 29.024 33.829 1.00 0.00 C ATOM 4478 OG SER 560 -9.537 29.775 34.606 1.00 0.00 O ATOM 4479 C SER 560 -11.627 28.741 35.940 1.00 0.00 C ATOM 4480 O SER 560 -11.758 29.684 36.734 1.00 0.00 O ATOM 4481 N GLU 561 -11.397 27.449 36.257 1.00 0.00 N ATOM 4482 CA GLU 561 -11.017 27.088 37.581 1.00 0.00 C ATOM 4483 CB GLU 561 -10.398 25.698 37.652 1.00 0.00 C ATOM 4484 CG GLU 561 -11.432 24.605 37.429 1.00 0.00 C ATOM 4485 CD GLU 561 -12.255 24.526 38.700 1.00 0.00 C ATOM 4486 OE1 GLU 561 -12.595 25.598 39.261 1.00 0.00 O ATOM 4487 OE2 GLU 561 -12.544 23.384 39.139 1.00 0.00 O ATOM 4488 C GLU 561 -9.960 28.083 37.761 1.00 0.00 C ATOM 4489 O GLU 561 -9.114 28.191 36.874 1.00 0.00 O ATOM 4490 N PHE 562 -10.059 28.829 38.883 1.00 0.00 N ATOM 4491 CA PHE 562 -9.515 30.154 39.027 1.00 0.00 C ATOM 4492 CB PHE 562 -9.350 30.545 40.503 1.00 0.00 C ATOM 4493 CG PHE 562 -8.784 31.920 40.588 1.00 0.00 C ATOM 4494 CD1 PHE 562 -9.572 33.021 40.355 1.00 0.00 C ATOM 4495 CD2 PHE 562 -7.463 32.110 40.925 1.00 0.00 C ATOM 4496 CE1 PHE 562 -9.047 34.290 40.444 1.00 0.00 C ATOM 4497 CE2 PHE 562 -6.934 33.375 41.015 1.00 0.00 C ATOM 4498 CZ PHE 562 -7.725 34.470 40.774 1.00 0.00 C ATOM 4499 C PHE 562 -8.195 30.207 38.389 1.00 0.00 C ATOM 4500 O PHE 562 -8.017 30.875 37.375 1.00 0.00 O ATOM 4501 N ASP 563 -7.236 29.445 38.877 1.00 0.00 N ATOM 4502 CA ASP 563 -6.120 29.431 38.010 1.00 0.00 C ATOM 4503 CB ASP 563 -4.763 29.350 38.720 1.00 0.00 C ATOM 4504 CG ASP 563 -4.488 30.742 39.282 1.00 0.00 C ATOM 4505 OD1 ASP 563 -5.182 31.704 38.854 1.00 0.00 O ATOM 4506 OD2 ASP 563 -3.578 30.864 40.143 1.00 0.00 O ATOM 4507 C ASP 563 -6.398 28.218 37.224 1.00 0.00 C ATOM 4508 O ASP 563 -6.872 27.227 37.785 1.00 0.00 O ATOM 4509 N LEU 564 -6.132 28.289 35.910 1.00 0.00 N ATOM 4510 CA LEU 564 -6.498 27.249 35.009 1.00 0.00 C ATOM 4511 CB LEU 564 -5.859 27.431 33.628 1.00 0.00 C ATOM 4512 CG LEU 564 -6.122 28.796 32.966 1.00 0.00 C ATOM 4513 CD1 LEU 564 -7.619 29.036 32.728 1.00 0.00 C ATOM 4514 CD2 LEU 564 -5.426 29.935 33.726 1.00 0.00 C ATOM 4515 C LEU 564 -5.895 26.028 35.560 1.00 0.00 C ATOM 4516 O LEU 564 -6.509 24.970 35.633 1.00 0.00 O ATOM 4517 N GLY 565 -4.650 26.172 35.997 1.00 0.00 N ATOM 4518 CA GLY 565 -4.021 25.077 36.636 1.00 0.00 C ATOM 4519 C GLY 565 -3.979 25.444 38.081 1.00 0.00 C ATOM 4520 O GLY 565 -4.984 25.792 38.699 1.00 0.00 O ATOM 4521 N CYS 566 -2.784 25.371 38.671 1.00 0.00 N ATOM 4522 CA CYS 566 -2.662 25.714 40.053 1.00 0.00 C ATOM 4523 CB CYS 566 -1.210 25.698 40.558 1.00 0.00 C ATOM 4524 SG CYS 566 -0.432 24.061 40.446 1.00 0.00 S ATOM 4525 C CYS 566 -3.159 27.141 40.237 1.00 0.00 C ATOM 4526 O CYS 566 -2.400 28.076 39.868 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 205 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 92.14 32.0 50 8.1 619 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 219 ARMSMC SURFACE . . . . . . . . 93.90 32.5 40 13.1 305 ARMSMC BURIED . . . . . . . . 84.76 30.0 10 3.2 314 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 74.69 45.8 24 8.9 269 ARMSSC1 RELIABLE SIDE CHAINS . 72.72 47.8 23 9.2 251 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 95 ARMSSC1 SURFACE . . . . . . . . 78.24 42.1 19 13.8 138 ARMSSC1 BURIED . . . . . . . . 59.28 60.0 5 3.8 131 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 72.10 42.1 19 12.4 153 ARMSSC2 RELIABLE SIDE CHAINS . 60.23 50.0 16 13.3 120 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 52 ARMSSC2 SURFACE . . . . . . . . 72.63 40.0 15 19.2 78 ARMSSC2 BURIED . . . . . . . . 70.06 50.0 4 5.3 75 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 68.74 50.0 6 13.0 46 ARMSSC3 RELIABLE SIDE CHAINS . 74.55 40.0 5 13.5 37 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 17 ARMSSC3 SURFACE . . . . . . . . 68.74 50.0 6 20.0 30 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 33.39 0.0 1 12.5 8 ARMSSC4 RELIABLE SIDE CHAINS . 33.39 0.0 1 12.5 8 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 3 ARMSSC4 SURFACE . . . . . . . . 33.39 0.0 1 16.7 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 12.28 (Number of atoms: 26) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 12.28 26 8.3 312 CRMSCA CRN = ALL/NP . . . . . 0.4725 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 111 CRMSCA SURFACE . . . . . . . . 13.03 21 13.5 155 CRMSCA BURIED . . . . . . . . 8.46 5 3.2 157 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 12.30 128 8.3 1547 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 552 CRMSMC SURFACE . . . . . . . . 12.98 103 13.4 769 CRMSMC BURIED . . . . . . . . 8.98 25 3.2 778 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 13.30 101 7.8 1291 CRMSSC RELIABLE SIDE CHAINS . 13.44 91 8.0 1131 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 469 CRMSSC SURFACE . . . . . . . . 14.17 82 12.8 642 CRMSSC BURIED . . . . . . . . 8.58 19 2.9 649 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 12.75 205 8.1 2539 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 913 CRMSALL SURFACE . . . . . . . . 13.50 166 13.2 1262 CRMSALL BURIED . . . . . . . . 8.84 39 3.1 1277 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.610 1.000 0.500 26 8.3 312 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 111 ERRCA SURFACE . . . . . . . . 12.464 1.000 0.500 21 13.5 155 ERRCA BURIED . . . . . . . . 8.024 1.000 0.500 5 3.2 157 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.642 1.000 0.500 128 8.3 1547 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 552 ERRMC SURFACE . . . . . . . . 12.392 1.000 0.500 103 13.4 769 ERRMC BURIED . . . . . . . . 8.551 1.000 0.500 25 3.2 778 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 12.461 1.000 0.500 101 7.8 1291 ERRSC RELIABLE SIDE CHAINS . 12.556 1.000 0.500 91 8.0 1131 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 469 ERRSC SURFACE . . . . . . . . 13.459 1.000 0.500 82 12.8 642 ERRSC BURIED . . . . . . . . 8.153 1.000 0.500 19 2.9 649 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 12.010 1.000 0.500 205 8.1 2539 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 913 ERRALL SURFACE . . . . . . . . 12.846 1.000 0.500 166 13.2 1262 ERRALL BURIED . . . . . . . . 8.453 1.000 0.500 39 3.1 1277 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 1 10 26 312 DISTCA CA (P) 0.00 0.00 0.00 0.32 3.21 312 DISTCA CA (RMS) 0.00 0.00 0.00 3.55 8.21 DISTCA ALL (N) 0 0 1 4 68 205 2539 DISTALL ALL (P) 0.00 0.00 0.04 0.16 2.68 2539 DISTALL ALL (RMS) 0.00 0.00 2.81 4.03 7.96 DISTALL END of the results output