####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 20 ( 158), selected 20 , name T0543TS481_1_1-D3 # Molecule2: number of CA atoms 386 ( 3136), selected 20 , name T0543-D3.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS481_1_1-D3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 141 - 156 4.35 6.85 LONGEST_CONTINUOUS_SEGMENT: 16 145 - 160 4.94 7.14 LCS_AVERAGE: 4.15 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 143 - 148 1.76 23.38 LONGEST_CONTINUOUS_SEGMENT: 6 147 - 152 1.87 17.29 LONGEST_CONTINUOUS_SEGMENT: 6 150 - 155 1.99 6.99 LONGEST_CONTINUOUS_SEGMENT: 6 151 - 156 1.88 7.09 LCS_AVERAGE: 1.40 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 148 - 152 0.76 16.89 LCS_AVERAGE: 1.05 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 20 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 141 S 141 3 4 16 3 3 3 4 8 9 10 11 12 13 14 15 16 18 18 20 20 20 20 20 LCS_GDT H 142 H 142 3 4 16 3 4 6 7 8 9 10 11 12 13 14 15 16 18 18 20 20 20 20 20 LCS_GDT W 143 W 143 4 6 16 3 4 6 7 8 9 10 11 12 13 14 15 16 18 18 20 20 20 20 20 LCS_GDT V 144 V 144 4 6 16 3 4 5 5 5 6 7 11 11 13 14 15 16 18 18 20 20 20 20 20 LCS_GDT D 145 D 145 4 6 16 3 4 5 5 5 6 7 7 8 8 10 12 14 16 18 20 20 20 20 20 LCS_GDT D 146 D 146 4 6 16 3 4 5 5 5 7 10 11 12 13 14 15 16 18 18 20 20 20 20 20 LCS_GDT D 147 D 147 4 6 16 3 4 5 5 6 9 10 11 12 13 14 15 15 16 17 20 20 20 20 20 LCS_GDT C 148 C 148 5 6 16 4 5 5 5 7 9 10 11 12 13 14 15 16 18 18 20 20 20 20 20 LCS_GDT E 149 E 149 5 6 16 4 5 5 5 7 9 10 11 12 13 14 15 16 18 18 20 20 20 20 20 LCS_GDT E 150 E 150 5 6 16 4 5 5 5 8 9 10 11 12 13 14 15 16 18 18 20 20 20 20 20 LCS_GDT I 151 I 151 5 6 16 4 5 6 7 8 9 10 11 12 13 14 15 16 18 18 20 20 20 20 20 LCS_GDT K 152 K 152 5 6 16 3 5 6 7 8 9 10 11 12 13 14 15 16 18 18 20 20 20 20 20 LCS_GDT V 153 V 153 4 6 16 3 4 6 7 8 9 10 11 12 13 14 15 16 18 18 20 20 20 20 20 LCS_GDT P 154 P 154 4 6 16 3 4 4 5 8 9 10 11 12 13 14 15 16 18 18 20 20 20 20 20 LCS_GDT E 155 E 155 3 6 16 3 3 6 7 8 9 10 11 12 12 14 15 16 18 18 20 20 20 20 20 LCS_GDT C 156 C 156 3 6 16 3 3 5 7 8 9 10 11 11 12 14 15 16 18 18 20 20 20 20 20 LCS_GDT P 157 P 157 4 4 16 3 4 4 4 4 5 5 5 6 7 13 15 15 18 18 20 20 20 20 20 LCS_GDT A 158 A 158 4 4 16 3 4 4 4 4 5 5 5 7 9 12 15 16 18 18 20 20 20 20 20 LCS_GDT G 159 G 159 4 4 16 3 4 4 4 4 5 5 5 11 12 14 15 16 18 18 20 20 20 20 20 LCS_GDT F 160 F 160 4 4 16 3 4 4 7 8 8 9 11 11 12 14 15 16 18 18 20 20 20 20 20 LCS_AVERAGE LCS_A: 2.20 ( 1.05 1.40 4.15 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 6 7 8 9 10 11 12 13 14 15 16 18 18 20 20 20 20 20 GDT PERCENT_AT 1.04 1.30 1.55 1.81 2.07 2.33 2.59 2.85 3.11 3.37 3.63 3.89 4.15 4.66 4.66 5.18 5.18 5.18 5.18 5.18 GDT RMS_LOCAL 0.40 0.76 0.99 1.40 1.55 2.05 2.48 2.49 3.06 3.33 3.64 4.06 4.37 4.84 4.84 5.39 5.39 5.39 5.39 5.39 GDT RMS_ALL_AT 17.19 16.89 6.77 6.89 6.93 6.75 9.15 6.77 9.17 9.19 7.90 5.73 5.65 5.49 5.49 5.39 5.39 5.39 5.39 5.39 # Checking swapping # possible swapping detected: D 146 D 146 # possible swapping detected: D 147 D 147 # possible swapping detected: E 155 E 155 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 141 S 141 3.733 0 0.662 0.845 6.110 43.810 43.968 LGA H 142 H 142 1.352 0 0.495 1.226 5.475 71.429 53.286 LGA W 143 W 143 1.579 0 0.582 1.210 9.707 69.524 32.143 LGA V 144 V 144 3.821 0 0.092 0.188 7.664 30.952 26.939 LGA D 145 D 145 9.998 0 0.148 0.708 13.610 1.905 0.952 LGA D 146 D 146 10.866 0 0.068 1.113 11.352 0.476 0.417 LGA D 147 D 147 14.402 0 0.428 1.108 18.998 0.000 0.000 LGA C 148 C 148 10.402 0 0.471 0.731 13.392 0.000 1.270 LGA E 149 E 149 10.009 0 0.057 1.056 15.081 7.262 3.228 LGA E 150 E 150 6.782 0 0.062 1.130 12.506 17.738 8.519 LGA I 151 I 151 1.277 0 0.328 1.093 5.187 67.143 57.679 LGA K 152 K 152 1.754 0 0.701 0.947 4.580 62.619 64.762 LGA V 153 V 153 1.626 0 0.220 1.013 3.707 77.143 67.687 LGA P 154 P 154 3.500 0 0.222 0.301 5.690 63.333 48.299 LGA E 155 E 155 1.938 0 0.522 0.783 8.777 67.262 38.254 LGA C 156 C 156 1.918 0 0.573 1.122 4.842 55.714 53.889 LGA P 157 P 157 8.181 0 0.607 0.811 10.512 10.833 8.163 LGA A 158 A 158 8.422 0 0.611 0.595 9.559 6.667 5.429 LGA G 159 G 159 5.568 0 0.128 0.128 6.383 29.762 29.762 LGA F 160 F 160 2.928 0 0.091 1.147 9.421 55.595 28.615 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 20 80 80 100.00 158 158 100.00 386 SUMMARY(RMSD_GDC): 5.389 5.191 6.523 1.915 1.485 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 20 386 4.0 11 2.49 2.785 2.429 0.424 LGA_LOCAL RMSD: 2.495 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 6.772 Number of assigned atoms: 20 Std_ASGN_ATOMS RMSD: 5.389 Standard rmsd on all 20 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.160344 * X + -0.756052 * Y + -0.634567 * Z + 0.043229 Y_new = 0.695008 * X + -0.542979 * Y + 0.471314 * Z + 79.238380 Z_new = -0.700894 * X + -0.365457 * Y + 0.612526 * Z + 27.544252 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.797538 0.776651 -0.537944 [DEG: 102.9913 44.4988 -30.8219 ] ZXZ: -2.209630 0.911544 -2.051429 [DEG: -126.6025 52.2276 -117.5382 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS481_1_1-D3 REMARK 2: T0543-D3.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS481_1_1-D3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 20 386 4.0 11 2.49 2.429 5.39 REMARK ---------------------------------------------------------- MOLECULE T0543TS481_1_1-D3 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 1 REMARK PFRMAT TS REMARK TARGET T0543 REMARK PARENT 3IJE_B ATOM 1073 N SER 141 -7.003 79.710 7.028 1.00 0.00 N ATOM 1074 CA SER 141 -6.814 79.342 5.648 1.00 0.00 C ATOM 1075 CB SER 141 -7.262 80.439 4.658 1.00 0.00 C ATOM 1076 OG SER 141 -8.668 80.630 4.733 1.00 0.00 O ATOM 1077 C SER 141 -5.385 78.978 5.342 1.00 0.00 C ATOM 1078 O SER 141 -5.066 78.729 4.178 1.00 0.00 O ATOM 1079 N HIS 142 -4.463 79.018 6.333 1.00 0.00 N ATOM 1080 CA HIS 142 -3.092 78.686 6.035 1.00 0.00 C ATOM 1081 ND1 HIS 142 0.223 78.476 6.764 1.00 0.00 N ATOM 1082 CG HIS 142 -0.735 79.442 6.563 1.00 0.00 C ATOM 1083 CB HIS 142 -2.146 79.355 7.042 1.00 0.00 C ATOM 1084 NE2 HIS 142 1.198 80.122 5.626 1.00 0.00 N ATOM 1085 CD2 HIS 142 -0.124 80.440 5.866 1.00 0.00 C ATOM 1086 CE1 HIS 142 1.362 78.934 6.183 1.00 0.00 C ATOM 1087 C HIS 142 -2.801 77.203 6.025 1.00 0.00 C ATOM 1088 O HIS 142 -2.740 76.559 4.980 1.00 0.00 O ATOM 1089 N TRP 143 -2.703 76.592 7.228 1.00 0.00 N ATOM 1090 CA TRP 143 -2.345 75.198 7.335 1.00 0.00 C ATOM 1091 CB TRP 143 -0.893 74.915 7.738 1.00 0.00 C ATOM 1092 CG TRP 143 0.007 74.692 6.560 1.00 0.00 C ATOM 1093 CD2 TRP 143 0.060 73.416 5.910 1.00 0.00 C ATOM 1094 CD1 TRP 143 0.877 75.509 5.899 1.00 0.00 C ATOM 1095 NE1 TRP 143 1.480 74.810 4.879 1.00 0.00 N ATOM 1096 CE2 TRP 143 0.982 73.521 4.875 1.00 0.00 C ATOM 1097 CE3 TRP 143 -0.613 72.254 6.163 1.00 0.00 C ATOM 1098 CZ2 TRP 143 1.254 72.450 4.070 1.00 0.00 C ATOM 1099 CZ3 TRP 143 -0.339 71.177 5.353 1.00 0.00 C ATOM 1100 CH2 TRP 143 0.578 71.275 4.326 1.00 0.00 H ATOM 1101 C TRP 143 -3.183 74.516 8.349 1.00 0.00 C ATOM 1102 O TRP 143 -3.137 74.820 9.538 1.00 0.00 O ATOM 1103 N VAL 144 -4.066 73.659 7.831 1.00 0.00 N ATOM 1104 CA VAL 144 -5.017 72.867 8.533 1.00 0.00 C ATOM 1105 CB VAL 144 -6.290 73.061 7.860 1.00 0.00 C ATOM 1106 CG1 VAL 144 -6.240 72.178 6.606 1.00 0.00 C ATOM 1107 CG2 VAL 144 -7.380 72.977 8.926 1.00 0.00 C ATOM 1108 C VAL 144 -4.716 71.389 8.716 1.00 0.00 C ATOM 1109 O VAL 144 -5.425 70.690 9.434 1.00 0.00 O ATOM 1110 N ASP 145 -3.747 70.838 7.970 1.00 0.00 N ATOM 1111 CA ASP 145 -3.450 69.430 7.875 1.00 0.00 C ATOM 1112 CB ASP 145 -2.600 69.060 6.650 1.00 0.00 C ATOM 1113 CG ASP 145 -3.512 69.157 5.436 1.00 0.00 C ATOM 1114 OD1 ASP 145 -4.483 69.958 5.491 1.00 0.00 O ATOM 1115 OD2 ASP 145 -3.260 68.417 4.448 1.00 0.00 O ATOM 1116 C ASP 145 -2.759 68.879 9.077 1.00 0.00 C ATOM 1117 O ASP 145 -2.068 67.879 8.938 1.00 0.00 O ATOM 1118 N ASP 146 -2.786 69.531 10.248 1.00 0.00 N ATOM 1119 CA ASP 146 -1.938 68.926 11.226 1.00 0.00 C ATOM 1120 CB ASP 146 -0.856 69.893 11.724 1.00 0.00 C ATOM 1121 CG ASP 146 0.111 70.139 10.578 1.00 0.00 C ATOM 1122 OD1 ASP 146 0.143 69.299 9.640 1.00 0.00 O ATOM 1123 OD2 ASP 146 0.831 71.171 10.624 1.00 0.00 O ATOM 1124 C ASP 146 -2.617 68.270 12.396 1.00 0.00 C ATOM 1125 O ASP 146 -3.587 68.751 12.982 1.00 0.00 O ATOM 1126 N ASP 147 -2.070 67.071 12.671 1.00 0.00 N ATOM 1127 CA ASP 147 -2.209 66.072 13.685 1.00 0.00 C ATOM 1128 CB ASP 147 -1.227 66.214 14.866 1.00 0.00 C ATOM 1129 CG ASP 147 -1.438 67.534 15.555 1.00 0.00 C ATOM 1130 OD1 ASP 147 -2.573 68.073 15.472 1.00 0.00 O ATOM 1131 OD2 ASP 147 -0.454 68.006 16.183 1.00 0.00 O ATOM 1132 C ASP 147 -3.579 65.756 14.158 1.00 0.00 C ATOM 1133 O ASP 147 -3.879 65.903 15.331 1.00 0.00 O ATOM 1134 N CYS 148 -4.595 65.569 13.338 1.00 0.00 N ATOM 1135 CA CYS 148 -5.579 64.779 13.978 1.00 0.00 C ATOM 1136 CB CYS 148 -6.938 65.460 14.048 1.00 0.00 C ATOM 1137 SG CYS 148 -6.895 67.010 14.999 1.00 0.00 S ATOM 1138 C CYS 148 -5.532 63.480 13.256 1.00 0.00 C ATOM 1139 O CYS 148 -4.894 62.514 13.651 1.00 0.00 O ATOM 1140 N GLU 149 -6.046 63.534 12.010 1.00 0.00 N ATOM 1141 CA GLU 149 -5.940 62.402 11.155 1.00 0.00 C ATOM 1142 CB GLU 149 -6.951 61.293 11.407 1.00 0.00 C ATOM 1143 CG GLU 149 -6.447 60.039 10.724 1.00 0.00 C ATOM 1144 CD GLU 149 -5.023 59.735 11.206 1.00 0.00 C ATOM 1145 OE1 GLU 149 -4.585 60.297 12.246 1.00 0.00 O ATOM 1146 OE2 GLU 149 -4.350 58.920 10.520 1.00 0.00 O ATOM 1147 C GLU 149 -6.014 62.871 9.745 1.00 0.00 C ATOM 1148 O GLU 149 -6.978 63.510 9.321 1.00 0.00 O ATOM 1149 N GLU 150 -4.963 62.522 8.983 1.00 0.00 N ATOM 1150 CA GLU 150 -4.789 62.990 7.644 1.00 0.00 C ATOM 1151 CB GLU 150 -3.380 62.746 7.073 1.00 0.00 C ATOM 1152 CG GLU 150 -3.047 61.265 6.874 1.00 0.00 C ATOM 1153 CD GLU 150 -1.632 61.156 6.318 1.00 0.00 C ATOM 1154 OE1 GLU 150 -1.339 61.854 5.313 1.00 0.00 O ATOM 1155 OE2 GLU 150 -0.818 60.384 6.893 1.00 0.00 O ATOM 1156 C GLU 150 -5.757 62.308 6.751 1.00 0.00 C ATOM 1157 O GLU 150 -6.198 61.187 7.002 1.00 0.00 O ATOM 1158 N ILE 151 -6.109 63.017 5.670 1.00 0.00 N ATOM 1159 CA ILE 151 -6.971 62.532 4.643 1.00 0.00 C ATOM 1160 CB ILE 151 -7.107 63.475 3.484 1.00 0.00 C ATOM 1161 CG2 ILE 151 -7.763 64.773 3.983 1.00 0.00 C ATOM 1162 CG1 ILE 151 -5.738 63.685 2.819 1.00 0.00 C ATOM 1163 CD1 ILE 151 -5.826 64.395 1.471 1.00 0.00 C ATOM 1164 C ILE 151 -6.353 61.278 4.144 1.00 0.00 C ATOM 1165 O ILE 151 -5.173 61.029 4.396 1.00 0.00 O ATOM 1166 N LYS 152 -7.181 60.445 3.477 1.00 0.00 N ATOM 1167 CA LYS 152 -6.789 59.186 2.919 1.00 0.00 C ATOM 1168 CB LYS 152 -7.824 58.666 1.914 1.00 0.00 C ATOM 1169 CG LYS 152 -9.207 58.540 2.555 1.00 0.00 C ATOM 1170 CD LYS 152 -10.359 58.447 1.556 1.00 0.00 C ATOM 1171 CE LYS 152 -10.985 57.056 1.467 1.00 0.00 C ATOM 1172 NZ LYS 152 -12.208 57.112 0.637 1.00 0.00 N ATOM 1173 C LYS 152 -5.491 59.427 2.235 1.00 0.00 C ATOM 1174 O LYS 152 -5.274 60.527 1.727 1.00 0.00 O ATOM 1175 N VAL 153 -4.619 58.394 2.245 1.00 0.00 N ATOM 1176 CA VAL 153 -3.231 58.467 1.883 1.00 0.00 C ATOM 1177 CB VAL 153 -2.656 57.140 1.492 1.00 0.00 C ATOM 1178 CG1 VAL 153 -1.202 57.354 1.048 1.00 0.00 C ATOM 1179 CG2 VAL 153 -2.821 56.169 2.673 1.00 0.00 C ATOM 1180 C VAL 153 -3.012 59.396 0.745 1.00 0.00 C ATOM 1181 O VAL 153 -3.351 59.170 -0.415 1.00 0.00 O ATOM 1182 N PRO 154 -2.437 60.478 1.165 1.00 0.00 N ATOM 1183 CA PRO 154 -2.054 61.548 0.298 1.00 0.00 C ATOM 1184 CD PRO 154 -2.602 60.919 2.542 1.00 0.00 C ATOM 1185 CB PRO 154 -2.044 62.808 1.158 1.00 0.00 C ATOM 1186 CG PRO 154 -1.908 62.286 2.592 1.00 0.00 C ATOM 1187 C PRO 154 -0.699 61.178 -0.173 1.00 0.00 C ATOM 1188 O PRO 154 -0.252 60.067 0.111 1.00 0.00 O ATOM 1189 N GLU 155 -0.027 62.101 -0.874 1.00 0.00 N ATOM 1190 CA GLU 155 1.303 61.841 -1.319 1.00 0.00 C ATOM 1191 CB GLU 155 1.988 63.076 -1.931 1.00 0.00 C ATOM 1192 CG GLU 155 3.475 62.856 -2.228 1.00 0.00 C ATOM 1193 CD GLU 155 4.115 64.221 -2.450 1.00 0.00 C ATOM 1194 OE1 GLU 155 3.581 64.995 -3.287 1.00 0.00 O ATOM 1195 OE2 GLU 155 5.143 64.511 -1.780 1.00 0.00 O ATOM 1196 C GLU 155 2.090 61.526 -0.094 1.00 0.00 C ATOM 1197 O GLU 155 3.007 60.710 -0.132 1.00 0.00 O ATOM 1198 N CYS 156 1.731 62.151 1.041 1.00 0.00 N ATOM 1199 CA CYS 156 2.534 62.006 2.217 1.00 0.00 C ATOM 1200 CB CYS 156 1.966 62.755 3.436 1.00 0.00 C ATOM 1201 SG CYS 156 3.012 62.551 4.907 1.00 0.00 S ATOM 1202 C CYS 156 2.693 60.564 2.591 1.00 0.00 C ATOM 1203 O CYS 156 3.829 60.138 2.795 1.00 0.00 O ATOM 1204 N PRO 157 1.672 59.760 2.690 1.00 0.00 N ATOM 1205 CA PRO 157 1.958 58.401 3.055 1.00 0.00 C ATOM 1206 CD PRO 157 0.380 60.190 3.200 1.00 0.00 C ATOM 1207 CB PRO 157 0.620 57.776 3.431 1.00 0.00 C ATOM 1208 CG PRO 157 -0.193 58.975 3.951 1.00 0.00 C ATOM 1209 C PRO 157 2.709 57.688 1.981 1.00 0.00 C ATOM 1210 O PRO 157 3.482 56.783 2.294 1.00 0.00 O ATOM 1211 N ALA 158 2.480 58.066 0.710 1.00 0.00 N ATOM 1212 CA ALA 158 3.133 57.424 -0.391 1.00 0.00 C ATOM 1213 CB ALA 158 2.614 57.916 -1.754 1.00 0.00 C ATOM 1214 C ALA 158 4.598 57.709 -0.341 1.00 0.00 C ATOM 1215 O ALA 158 5.424 56.821 -0.546 1.00 0.00 O ATOM 1216 N GLY 159 4.957 58.967 -0.027 1.00 0.00 N ATOM 1217 CA GLY 159 6.326 59.386 -0.075 1.00 0.00 C ATOM 1218 C GLY 159 7.125 58.564 0.876 1.00 0.00 C ATOM 1219 O GLY 159 8.228 58.128 0.550 1.00 0.00 O ATOM 1220 N PHE 160 6.589 58.328 2.088 1.00 0.00 N ATOM 1221 CA PHE 160 7.334 57.547 3.027 1.00 0.00 C ATOM 1222 CB PHE 160 6.605 57.307 4.363 1.00 0.00 C ATOM 1223 CG PHE 160 7.462 56.385 5.164 1.00 0.00 C ATOM 1224 CD1 PHE 160 8.589 56.843 5.808 1.00 0.00 C ATOM 1225 CD2 PHE 160 7.131 55.054 5.279 1.00 0.00 C ATOM 1226 CE1 PHE 160 9.375 55.986 6.544 1.00 0.00 C ATOM 1227 CE2 PHE 160 7.911 54.193 6.014 1.00 0.00 C ATOM 1228 CZ PHE 160 9.038 54.657 6.647 1.00 0.00 C ATOM 1229 C PHE 160 7.602 56.190 2.394 1.00 0.00 C ATOM 1230 O PHE 160 6.622 55.431 2.178 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 158 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 90.04 42.1 38 5.0 767 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 306 ARMSMC SURFACE . . . . . . . . 90.10 45.5 33 9.5 347 ARMSMC BURIED . . . . . . . . 89.63 20.0 5 1.2 420 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 87.21 33.3 18 5.4 334 ARMSSC1 RELIABLE SIDE CHAINS . 88.11 31.2 16 5.2 310 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 132 ARMSSC1 SURFACE . . . . . . . . 83.72 40.0 15 9.4 159 ARMSSC1 BURIED . . . . . . . . 102.94 0.0 3 1.7 175 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 55.90 53.8 13 5.3 247 ARMSSC2 RELIABLE SIDE CHAINS . 57.67 50.0 12 6.6 183 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 100 ARMSSC2 SURFACE . . . . . . . . 63.38 40.0 10 8.5 118 ARMSSC2 BURIED . . . . . . . . 12.33 100.0 3 2.3 129 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 97.05 25.0 4 5.6 71 ARMSSC3 RELIABLE SIDE CHAINS . 97.05 25.0 4 6.6 61 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 32 ARMSSC3 SURFACE . . . . . . . . 97.05 25.0 4 9.1 44 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 27 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 12.94 100.0 1 3.1 32 ARMSSC4 RELIABLE SIDE CHAINS . 12.94 100.0 1 3.1 32 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 15 ARMSSC4 SURFACE . . . . . . . . 12.94 100.0 1 4.5 22 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 5.39 (Number of atoms: 20) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 5.39 20 5.2 386 CRMSCA CRN = ALL/NP . . . . . 0.2694 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 153 CRMSCA SURFACE . . . . . . . . 5.59 17 9.7 176 CRMSCA BURIED . . . . . . . . 4.06 3 1.4 210 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 5.48 99 5.2 1902 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 758 CRMSMC SURFACE . . . . . . . . 5.67 84 9.6 872 CRMSMC BURIED . . . . . . . . 4.29 15 1.5 1030 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 7.78 78 4.9 1592 CRMSSC RELIABLE SIDE CHAINS . 8.01 70 5.2 1352 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 633 CRMSSC SURFACE . . . . . . . . 7.85 57 7.5 764 CRMSSC BURIED . . . . . . . . 7.58 21 2.5 828 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 6.60 158 5.0 3136 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 1245 CRMSALL SURFACE . . . . . . . . 6.62 125 8.5 1468 CRMSALL BURIED . . . . . . . . 6.52 33 2.0 1668 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.157 1.000 0.500 20 5.2 386 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 153 ERRCA SURFACE . . . . . . . . 5.361 1.000 0.500 17 9.7 176 ERRCA BURIED . . . . . . . . 4.003 1.000 0.500 3 1.4 210 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.142 1.000 0.500 99 5.2 1902 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 758 ERRMC SURFACE . . . . . . . . 5.323 1.000 0.500 84 9.6 872 ERRMC BURIED . . . . . . . . 4.128 1.000 0.500 15 1.5 1030 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.281 1.000 0.500 78 4.9 1592 ERRSC RELIABLE SIDE CHAINS . 7.566 1.000 0.500 70 5.2 1352 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 633 ERRSC SURFACE . . . . . . . . 7.252 1.000 0.500 57 7.5 764 ERRSC BURIED . . . . . . . . 7.360 1.000 0.500 21 2.5 828 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.080 1.000 0.500 158 5.0 3136 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 1245 ERRALL SURFACE . . . . . . . . 6.074 1.000 0.500 125 8.5 1468 ERRALL BURIED . . . . . . . . 6.106 1.000 0.500 33 2.0 1668 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 11 20 20 386 DISTCA CA (P) 0.00 0.00 0.26 2.85 5.18 386 DISTCA CA (RMS) 0.00 0.00 2.92 4.03 5.39 DISTCA ALL (N) 1 4 14 63 146 158 3136 DISTALL ALL (P) 0.03 0.13 0.45 2.01 4.66 3136 DISTALL ALL (RMS) 0.23 1.35 2.34 3.85 6.02 DISTALL END of the results output