####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS481_1_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS481_1_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 56 - 95 2.14 2.14 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 28 67 - 94 1.94 2.18 LCS_AVERAGE: 58.94 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 72 - 94 0.82 2.35 LCS_AVERAGE: 38.75 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 7 12 40 4 17 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 57 S 57 7 12 40 11 25 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 58 C 58 7 12 40 3 25 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 59 K 59 7 12 40 14 25 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT G 60 G 60 7 12 40 13 25 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT R 61 R 61 7 12 40 14 25 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 62 C 62 7 12 40 3 15 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT F 63 F 63 4 12 40 3 4 5 13 22 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 64 E 64 4 12 40 3 22 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 65 L 65 5 12 40 4 4 5 27 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT Q 66 Q 66 5 12 40 4 4 5 9 15 29 35 36 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 67 E 67 5 28 40 4 6 14 30 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT V 68 V 68 5 28 40 4 4 5 6 7 22 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT G 69 G 69 5 28 40 1 5 10 18 31 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT P 70 P 70 3 28 40 3 3 3 6 12 21 33 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT P 71 P 71 3 28 40 3 3 3 15 22 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 72 D 72 23 28 40 3 18 28 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 73 C 73 23 28 40 11 25 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT R 74 R 74 23 28 40 14 25 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 75 C 75 23 28 40 14 25 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 76 D 76 23 28 40 14 25 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT N 77 N 77 23 28 40 10 25 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 78 L 78 23 28 40 14 25 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 79 C 79 23 28 40 14 25 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 80 K 80 23 28 40 14 25 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 81 S 81 23 28 40 14 25 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT Y 82 Y 82 23 28 40 14 25 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 83 S 83 23 28 40 14 25 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 84 S 84 23 28 40 14 25 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 85 C 85 23 28 40 13 25 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 86 C 86 23 28 40 11 25 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT H 87 H 87 23 28 40 8 22 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 88 D 88 23 28 40 14 25 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT F 89 F 89 23 28 40 8 25 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 90 D 90 23 28 40 6 25 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 91 E 91 23 28 40 6 25 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 92 L 92 23 28 40 9 25 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 93 C 93 23 28 40 14 25 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 94 L 94 23 28 40 4 11 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 95 K 95 3 27 40 3 4 9 16 27 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_AVERAGE LCS_A: 65.90 ( 38.75 58.94 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 14 25 29 31 33 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 GDT PERCENT_AT 35.00 62.50 72.50 77.50 82.50 85.00 90.00 95.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.38 0.66 0.81 0.94 1.13 1.25 1.58 1.86 2.02 2.14 2.14 2.14 2.14 2.14 2.14 2.14 2.14 2.14 2.14 2.14 GDT RMS_ALL_AT 2.28 2.27 2.26 2.27 2.26 2.26 2.17 2.15 2.15 2.14 2.14 2.14 2.14 2.14 2.14 2.14 2.14 2.14 2.14 2.14 # Checking swapping # possible swapping detected: Y 82 Y 82 # possible swapping detected: D 88 D 88 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 1.202 0 0.671 0.671 2.786 75.357 75.357 LGA S 57 S 57 0.965 0 0.160 0.577 1.855 88.214 84.524 LGA C 58 C 58 1.007 0 0.626 0.606 2.733 79.881 78.968 LGA K 59 K 59 0.564 0 0.096 1.195 4.888 90.476 72.857 LGA G 60 G 60 0.649 0 0.105 0.105 0.853 90.476 90.476 LGA R 61 R 61 0.574 0 0.708 1.063 3.155 82.738 85.238 LGA C 62 C 62 1.241 0 0.610 0.601 2.116 79.524 77.381 LGA F 63 F 63 3.379 0 0.273 1.461 12.323 59.167 24.935 LGA E 64 E 64 1.451 0 0.553 0.683 2.562 73.214 74.021 LGA L 65 L 65 2.892 0 0.666 1.433 5.913 50.595 40.179 LGA Q 66 Q 66 4.805 0 0.037 0.605 12.181 49.524 24.021 LGA E 67 E 67 2.339 0 0.174 1.240 10.023 69.048 35.556 LGA V 68 V 68 3.858 0 0.509 0.634 7.930 50.119 32.993 LGA G 69 G 69 3.410 0 0.657 0.657 3.599 50.119 50.119 LGA P 70 P 70 5.440 0 0.034 0.367 7.288 35.952 28.912 LGA P 71 P 71 4.202 0 0.665 0.657 6.451 45.833 34.150 LGA D 72 D 72 2.828 3 0.287 0.367 5.738 59.524 32.440 LGA C 73 C 73 0.992 0 0.098 0.652 1.950 79.405 80.159 LGA R 74 R 74 0.570 0 0.035 1.376 6.475 88.214 71.991 LGA C 75 C 75 0.542 0 0.065 0.222 1.692 92.857 89.127 LGA D 76 D 76 0.758 0 0.053 0.398 2.002 90.476 83.869 LGA N 77 N 77 1.314 0 0.085 0.919 4.453 81.429 66.964 LGA L 78 L 78 1.043 0 0.064 1.270 3.306 81.429 76.548 LGA C 79 C 79 0.965 0 0.026 0.106 1.195 90.476 87.460 LGA K 80 K 80 0.904 0 0.028 1.332 6.737 88.214 66.984 LGA S 81 S 81 0.726 0 0.066 0.690 2.577 90.476 84.921 LGA Y 82 Y 82 0.592 0 0.152 0.422 3.230 90.476 75.040 LGA S 83 S 83 0.495 0 0.237 0.774 1.702 92.976 90.794 LGA S 84 S 84 0.416 0 0.094 0.082 0.721 97.619 95.238 LGA C 85 C 85 0.833 0 0.056 0.108 1.045 90.476 87.460 LGA C 86 C 86 1.020 0 0.028 0.271 1.919 88.214 86.032 LGA H 87 H 87 1.333 0 0.072 0.159 2.566 83.690 72.381 LGA D 88 D 88 0.592 0 0.210 0.983 3.365 92.857 78.095 LGA F 89 F 89 0.649 0 0.090 0.148 1.041 90.476 89.697 LGA D 90 D 90 1.335 0 0.023 0.674 2.320 79.405 74.107 LGA E 91 E 91 1.379 0 0.112 0.870 3.228 79.286 73.280 LGA L 92 L 92 1.042 0 0.198 1.380 5.608 90.595 71.548 LGA C 93 C 93 0.856 0 0.628 0.547 3.337 78.333 75.317 LGA L 94 L 94 2.175 0 0.525 0.455 9.253 72.976 43.869 LGA K 95 K 95 4.901 0 0.141 1.696 12.520 40.833 19.788 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 2.142 1.983 3.567 77.024 67.070 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 38 1.86 83.750 80.118 1.934 LGA_LOCAL RMSD: 1.864 Number of atoms: 38 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.149 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 2.142 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.140455 * X + -0.756835 * Y + 0.638337 * Z + 29.322096 Y_new = -0.910570 * X + 0.351896 * Y + 0.216866 * Z + 71.071106 Z_new = -0.388760 * X + -0.550790 * Y + -0.738576 * Z + 17.446039 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.723839 0.399286 -2.500820 [DEG: -98.7687 22.8774 -143.2864 ] ZXZ: 1.898299 2.401753 -2.526969 [DEG: 108.7645 137.6103 -144.7847 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS481_1_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS481_1_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 38 1.86 80.118 2.14 REMARK ---------------------------------------------------------- MOLECULE T0543TS481_1_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 1 REMARK PFRMAT TS REMARK TARGET T0543 REMARK PARENT 3IJE_B ATOM 422 N GLY 56 35.283 71.167 17.738 1.00 0.00 N ATOM 423 CA GLY 56 35.213 72.471 18.326 1.00 0.00 C ATOM 424 C GLY 56 33.792 72.841 18.581 1.00 0.00 C ATOM 425 O GLY 56 32.991 72.038 19.058 1.00 0.00 O ATOM 426 N SER 57 33.475 74.113 18.276 1.00 0.00 N ATOM 427 CA SER 57 32.190 74.694 18.498 1.00 0.00 C ATOM 428 CB SER 57 32.177 76.223 18.373 1.00 0.00 C ATOM 429 OG SER 57 32.473 76.604 17.038 1.00 0.00 O ATOM 430 C SER 57 31.244 74.177 17.476 1.00 0.00 C ATOM 431 O SER 57 31.624 73.473 16.542 1.00 0.00 O ATOM 432 N CYS 58 29.955 74.521 17.653 1.00 0.00 N ATOM 433 CA CYS 58 28.985 74.016 16.744 1.00 0.00 C ATOM 434 CB CYS 58 27.687 73.581 17.402 1.00 0.00 C ATOM 435 SG CYS 58 27.999 72.312 18.642 1.00 0.00 S ATOM 436 C CYS 58 28.625 75.063 15.764 1.00 0.00 C ATOM 437 O CYS 58 28.461 76.239 16.083 1.00 0.00 O ATOM 438 N LYS 59 28.539 74.616 14.505 1.00 0.00 N ATOM 439 CA LYS 59 28.101 75.431 13.425 1.00 0.00 C ATOM 440 CB LYS 59 29.170 76.425 12.922 1.00 0.00 C ATOM 441 CG LYS 59 30.509 75.802 12.531 1.00 0.00 C ATOM 442 CD LYS 59 30.493 75.047 11.202 1.00 0.00 C ATOM 443 CE LYS 59 30.335 75.954 9.985 1.00 0.00 C ATOM 444 NZ LYS 59 30.422 75.149 8.748 1.00 0.00 N ATOM 445 C LYS 59 27.727 74.458 12.366 1.00 0.00 C ATOM 446 O LYS 59 28.438 73.485 12.117 1.00 0.00 O ATOM 447 N GLY 60 26.549 74.658 11.755 1.00 0.00 N ATOM 448 CA GLY 60 26.125 73.725 10.760 1.00 0.00 C ATOM 449 C GLY 60 25.606 72.548 11.495 1.00 0.00 C ATOM 450 O GLY 60 25.169 71.574 10.887 1.00 0.00 O ATOM 451 N ARG 61 25.627 72.635 12.839 1.00 0.00 N ATOM 452 CA ARG 61 25.166 71.579 13.677 1.00 0.00 C ATOM 453 CB ARG 61 26.131 71.155 14.804 1.00 0.00 C ATOM 454 CG ARG 61 27.300 70.297 14.308 1.00 0.00 C ATOM 455 CD ARG 61 28.032 69.516 15.406 1.00 0.00 C ATOM 456 NE ARG 61 28.892 70.453 16.184 1.00 0.00 N ATOM 457 CZ ARG 61 29.761 69.957 17.115 1.00 0.00 C ATOM 458 NH1 ARG 61 29.817 68.615 17.354 1.00 0.00 H ATOM 459 NH2 ARG 61 30.577 70.800 17.815 1.00 0.00 H ATOM 460 C ARG 61 23.905 72.048 14.295 1.00 0.00 C ATOM 461 O ARG 61 23.157 72.827 13.706 1.00 0.00 O ATOM 462 N CYS 62 23.644 71.542 15.514 1.00 0.00 N ATOM 463 CA CYS 62 22.417 71.698 16.237 1.00 0.00 C ATOM 464 CB CYS 62 21.770 73.086 16.109 1.00 0.00 C ATOM 465 SG CYS 62 22.305 74.325 17.321 1.00 0.00 S ATOM 466 C CYS 62 21.448 70.726 15.643 1.00 0.00 C ATOM 467 O CYS 62 20.450 70.369 16.264 1.00 0.00 O ATOM 468 N PHE 63 21.721 70.306 14.394 1.00 0.00 N ATOM 469 CA PHE 63 20.976 69.330 13.664 1.00 0.00 C ATOM 470 CB PHE 63 21.100 69.496 12.142 1.00 0.00 C ATOM 471 CG PHE 63 22.436 69.002 11.714 1.00 0.00 C ATOM 472 CD1 PHE 63 23.594 69.523 12.244 1.00 0.00 C ATOM 473 CD2 PHE 63 22.518 68.029 10.744 1.00 0.00 C ATOM 474 CE1 PHE 63 24.816 69.054 11.824 1.00 0.00 C ATOM 475 CE2 PHE 63 23.738 67.565 10.319 1.00 0.00 C ATOM 476 CZ PHE 63 24.888 68.083 10.862 1.00 0.00 C ATOM 477 C PHE 63 21.449 67.955 14.008 1.00 0.00 C ATOM 478 O PHE 63 20.677 66.996 13.957 1.00 0.00 O ATOM 479 N GLU 64 22.753 67.810 14.334 1.00 0.00 N ATOM 480 CA GLU 64 23.248 66.465 14.338 1.00 0.00 C ATOM 481 CB GLU 64 24.778 66.343 14.443 1.00 0.00 C ATOM 482 CG GLU 64 25.507 67.000 15.602 1.00 0.00 C ATOM 483 CD GLU 64 26.962 66.646 15.343 1.00 0.00 C ATOM 484 OE1 GLU 64 27.258 66.238 14.188 1.00 0.00 O ATOM 485 OE2 GLU 64 27.792 66.765 16.282 1.00 0.00 O ATOM 486 C GLU 64 22.591 65.573 15.335 1.00 0.00 C ATOM 487 O GLU 64 21.985 64.587 14.917 1.00 0.00 O ATOM 488 N LEU 65 22.657 65.936 16.637 1.00 0.00 N ATOM 489 CA LEU 65 22.122 65.190 17.749 1.00 0.00 C ATOM 490 CB LEU 65 21.477 63.815 17.473 1.00 0.00 C ATOM 491 CG LEU 65 22.467 62.640 17.359 1.00 0.00 C ATOM 492 CD1 LEU 65 21.728 61.330 17.046 1.00 0.00 C ATOM 493 CD2 LEU 65 23.602 62.944 16.379 1.00 0.00 C ATOM 494 C LEU 65 23.293 64.953 18.623 1.00 0.00 C ATOM 495 O LEU 65 24.363 65.516 18.392 1.00 0.00 O ATOM 496 N GLN 66 23.133 64.124 19.668 1.00 0.00 N ATOM 497 CA GLN 66 24.264 63.910 20.509 1.00 0.00 C ATOM 498 CB GLN 66 23.943 63.142 21.799 1.00 0.00 C ATOM 499 CG GLN 66 25.153 62.979 22.716 1.00 0.00 C ATOM 500 CD GLN 66 24.619 62.595 24.083 1.00 0.00 C ATOM 501 OE1 GLN 66 23.488 62.944 24.414 1.00 0.00 O ATOM 502 NE2 GLN 66 25.439 61.874 24.894 1.00 0.00 N ATOM 503 C GLN 66 25.291 63.165 19.729 1.00 0.00 C ATOM 504 O GLN 66 24.992 62.200 19.026 1.00 0.00 O ATOM 505 N GLU 67 26.541 63.660 19.800 1.00 0.00 N ATOM 506 CA GLU 67 27.622 62.975 19.160 1.00 0.00 C ATOM 507 CB GLU 67 28.918 63.780 19.027 1.00 0.00 C ATOM 508 CG GLU 67 28.976 64.687 17.810 1.00 0.00 C ATOM 509 CD GLU 67 29.453 63.847 16.635 1.00 0.00 C ATOM 510 OE1 GLU 67 30.153 62.827 16.870 1.00 0.00 O ATOM 511 OE2 GLU 67 29.123 64.225 15.478 1.00 0.00 O ATOM 512 C GLU 67 27.966 61.838 20.041 1.00 0.00 C ATOM 513 O GLU 67 27.873 61.936 21.263 1.00 0.00 O ATOM 514 N VAL 68 28.305 60.691 19.440 1.00 0.00 N ATOM 515 CA VAL 68 28.714 59.632 20.296 1.00 0.00 C ATOM 516 CB VAL 68 28.782 58.308 19.600 1.00 0.00 C ATOM 517 CG1 VAL 68 29.439 57.307 20.554 1.00 0.00 C ATOM 518 CG2 VAL 68 27.355 57.899 19.207 1.00 0.00 C ATOM 519 C VAL 68 30.054 59.933 20.867 1.00 0.00 C ATOM 520 O VAL 68 30.238 59.976 22.061 1.00 0.00 O ATOM 521 N GLY 69 31.063 60.212 20.055 1.00 0.00 N ATOM 522 CA GLY 69 32.395 60.486 20.522 1.00 0.00 C ATOM 523 C GLY 69 32.651 61.879 20.992 1.00 0.00 C ATOM 524 O GLY 69 33.737 62.042 21.545 1.00 0.00 O ATOM 525 N PRO 70 31.772 62.857 20.778 1.00 0.00 N ATOM 526 CA PRO 70 32.173 64.236 20.745 1.00 0.00 C ATOM 527 CD PRO 70 30.522 62.801 21.513 1.00 0.00 C ATOM 528 CB PRO 70 30.919 65.081 20.889 1.00 0.00 C ATOM 529 CG PRO 70 30.109 64.239 21.870 1.00 0.00 C ATOM 530 C PRO 70 33.098 64.624 21.828 1.00 0.00 C ATOM 531 O PRO 70 32.957 64.155 22.957 1.00 0.00 O ATOM 532 N PRO 71 34.045 65.436 21.482 1.00 0.00 N ATOM 533 CA PRO 71 34.942 65.923 22.470 1.00 0.00 C ATOM 534 CD PRO 71 34.627 65.443 20.149 1.00 0.00 C ATOM 535 CB PRO 71 35.990 66.731 21.704 1.00 0.00 C ATOM 536 CG PRO 71 36.037 66.034 20.330 1.00 0.00 C ATOM 537 C PRO 71 34.005 66.694 23.315 1.00 0.00 C ATOM 538 O PRO 71 33.036 67.189 22.742 1.00 0.00 O ATOM 539 N ASP 72 34.271 66.799 24.634 1.00 0.00 N ATOM 540 CA ASP 72 33.343 67.354 25.580 1.00 0.00 C ATOM 541 CB ASP 72 33.976 67.739 26.927 1.00 0.00 C ATOM 542 CG ASP 72 34.182 66.470 27.733 1.00 0.00 C ATOM 543 OD1 ASP 72 33.301 65.574 27.648 1.00 0.00 O ATOM 544 OD2 ASP 72 35.220 66.379 28.442 1.00 0.00 O ATOM 545 C ASP 72 32.709 68.584 25.040 1.00 0.00 C ATOM 546 O ASP 72 33.261 69.681 25.104 1.00 0.00 O ATOM 547 N CYS 73 31.505 68.391 24.475 1.00 0.00 N ATOM 548 CA CYS 73 30.739 69.444 23.900 1.00 0.00 C ATOM 549 CB CYS 73 31.516 70.352 22.950 1.00 0.00 C ATOM 550 SG CYS 73 30.334 71.395 22.061 1.00 0.00 S ATOM 551 C CYS 73 29.688 68.814 23.052 1.00 0.00 C ATOM 552 O CYS 73 29.991 67.955 22.225 1.00 0.00 O ATOM 553 N ARG 74 28.423 69.243 23.224 1.00 0.00 N ATOM 554 CA ARG 74 27.365 68.678 22.439 1.00 0.00 C ATOM 555 CB ARG 74 26.615 67.545 23.159 1.00 0.00 C ATOM 556 CG ARG 74 27.450 66.272 23.316 1.00 0.00 C ATOM 557 CD ARG 74 26.763 65.178 24.134 1.00 0.00 C ATOM 558 NE ARG 74 27.609 63.955 24.035 1.00 0.00 N ATOM 559 CZ ARG 74 28.687 63.789 24.855 1.00 0.00 C ATOM 560 NH1 ARG 74 29.025 64.764 25.748 1.00 0.00 H ATOM 561 NH2 ARG 74 29.428 62.644 24.780 1.00 0.00 H ATOM 562 C ARG 74 26.375 69.762 22.128 1.00 0.00 C ATOM 563 O ARG 74 26.247 70.749 22.849 1.00 0.00 O ATOM 564 N CYS 75 25.814 69.691 20.910 1.00 0.00 N ATOM 565 CA CYS 75 24.795 70.550 20.385 1.00 0.00 C ATOM 566 CB CYS 75 25.218 71.298 19.132 1.00 0.00 C ATOM 567 SG CYS 75 26.362 72.549 19.777 1.00 0.00 S ATOM 568 C CYS 75 23.386 70.041 20.352 1.00 0.00 C ATOM 569 O CYS 75 22.601 70.538 19.543 1.00 0.00 O ATOM 570 N ASP 76 23.056 68.945 21.060 1.00 0.00 N ATOM 571 CA ASP 76 21.725 68.408 20.954 1.00 0.00 C ATOM 572 CB ASP 76 21.612 66.953 21.450 1.00 0.00 C ATOM 573 CG ASP 76 21.998 66.912 22.924 1.00 0.00 C ATOM 574 OD1 ASP 76 23.080 67.458 23.269 1.00 0.00 O ATOM 575 OD2 ASP 76 21.218 66.335 23.725 1.00 0.00 O ATOM 576 C ASP 76 20.735 69.239 21.718 1.00 0.00 C ATOM 577 O ASP 76 21.066 70.265 22.312 1.00 0.00 O ATOM 578 N ASN 77 19.455 68.813 21.664 1.00 0.00 N ATOM 579 CA ASN 77 18.365 69.489 22.308 1.00 0.00 C ATOM 580 CB ASN 77 17.009 68.836 22.015 1.00 0.00 C ATOM 581 CG ASN 77 15.963 69.645 22.761 1.00 0.00 C ATOM 582 OD1 ASN 77 16.145 70.838 22.993 1.00 0.00 O ATOM 583 ND2 ASN 77 14.858 68.971 23.178 1.00 0.00 N ATOM 584 C ASN 77 18.528 69.465 23.795 1.00 0.00 C ATOM 585 O ASN 77 18.261 70.446 24.480 1.00 0.00 O ATOM 586 N LEU 78 18.925 68.301 24.319 1.00 0.00 N ATOM 587 CA LEU 78 19.109 67.958 25.699 1.00 0.00 C ATOM 588 CB LEU 78 19.056 66.442 25.914 1.00 0.00 C ATOM 589 CG LEU 78 17.665 65.868 25.599 1.00 0.00 C ATOM 590 CD1 LEU 78 17.620 64.356 25.816 1.00 0.00 C ATOM 591 CD2 LEU 78 16.564 66.608 26.373 1.00 0.00 C ATOM 592 C LEU 78 20.367 68.502 26.305 1.00 0.00 C ATOM 593 O LEU 78 20.567 68.339 27.504 1.00 0.00 O ATOM 594 N CYS 79 21.278 69.104 25.515 1.00 0.00 N ATOM 595 CA CYS 79 22.580 69.455 26.028 1.00 0.00 C ATOM 596 CB CYS 79 23.490 70.186 25.013 1.00 0.00 C ATOM 597 SG CYS 79 23.058 71.928 24.738 1.00 0.00 S ATOM 598 C CYS 79 22.446 70.311 27.254 1.00 0.00 C ATOM 599 O CYS 79 23.281 70.222 28.150 1.00 0.00 O ATOM 600 N LYS 80 21.405 71.161 27.344 1.00 0.00 N ATOM 601 CA LYS 80 21.260 71.980 28.516 1.00 0.00 C ATOM 602 CB LYS 80 20.182 73.076 28.408 1.00 0.00 C ATOM 603 CG LYS 80 19.010 72.785 27.472 1.00 0.00 C ATOM 604 CD LYS 80 19.437 72.725 26.004 1.00 0.00 C ATOM 605 CE LYS 80 18.331 73.121 25.022 1.00 0.00 C ATOM 606 NZ LYS 80 18.821 72.985 23.631 1.00 0.00 N ATOM 607 C LYS 80 21.038 71.163 29.752 1.00 0.00 C ATOM 608 O LYS 80 21.551 71.510 30.815 1.00 0.00 O ATOM 609 N SER 81 20.276 70.060 29.671 1.00 0.00 N ATOM 610 CA SER 81 20.042 69.281 30.851 1.00 0.00 C ATOM 611 CB SER 81 19.205 68.025 30.564 1.00 0.00 C ATOM 612 OG SER 81 19.027 67.279 31.759 1.00 0.00 O ATOM 613 C SER 81 21.362 68.819 31.387 1.00 0.00 C ATOM 614 O SER 81 21.664 68.997 32.566 1.00 0.00 O ATOM 615 N TYR 82 22.184 68.230 30.498 1.00 0.00 N ATOM 616 CA TYR 82 23.469 67.656 30.784 1.00 0.00 C ATOM 617 CB TYR 82 24.048 66.924 29.568 1.00 0.00 C ATOM 618 CG TYR 82 22.952 66.031 29.098 1.00 0.00 C ATOM 619 CD1 TYR 82 22.496 64.992 29.873 1.00 0.00 C ATOM 620 CD2 TYR 82 22.384 66.240 27.864 1.00 0.00 C ATOM 621 CE1 TYR 82 21.481 64.178 29.427 1.00 0.00 C ATOM 622 CE2 TYR 82 21.372 65.427 27.415 1.00 0.00 C ATOM 623 CZ TYR 82 20.919 64.393 28.194 1.00 0.00 C ATOM 624 OH TYR 82 19.880 63.559 27.733 1.00 0.00 H ATOM 625 C TYR 82 24.412 68.756 31.172 1.00 0.00 C ATOM 626 O TYR 82 25.291 68.570 32.011 1.00 0.00 O ATOM 627 N SER 83 24.230 69.945 30.570 1.00 0.00 N ATOM 628 CA SER 83 25.096 71.078 30.750 1.00 0.00 C ATOM 629 CB SER 83 25.392 71.378 32.234 1.00 0.00 C ATOM 630 OG SER 83 26.235 72.516 32.359 1.00 0.00 O ATOM 631 C SER 83 26.395 70.829 30.028 1.00 0.00 C ATOM 632 O SER 83 27.423 71.423 30.352 1.00 0.00 O ATOM 633 N SER 84 26.366 69.919 29.032 1.00 0.00 N ATOM 634 CA SER 84 27.475 69.585 28.172 1.00 0.00 C ATOM 635 CB SER 84 27.337 68.187 27.545 1.00 0.00 C ATOM 636 OG SER 84 26.205 68.141 26.688 1.00 0.00 O ATOM 637 C SER 84 27.620 70.568 27.030 1.00 0.00 C ATOM 638 O SER 84 28.578 70.483 26.263 1.00 0.00 O ATOM 639 N CYS 85 26.693 71.536 26.892 1.00 0.00 N ATOM 640 CA CYS 85 26.611 72.389 25.727 1.00 0.00 C ATOM 641 CB CYS 85 25.498 73.453 25.833 1.00 0.00 C ATOM 642 SG CYS 85 23.857 72.855 26.357 1.00 0.00 S ATOM 643 C CYS 85 27.872 73.180 25.508 1.00 0.00 C ATOM 644 O CYS 85 28.568 73.544 26.455 1.00 0.00 O ATOM 645 N CYS 86 28.195 73.452 24.217 1.00 0.00 N ATOM 646 CA CYS 86 29.291 74.324 23.881 1.00 0.00 C ATOM 647 CB CYS 86 29.772 74.313 22.417 1.00 0.00 C ATOM 648 SG CYS 86 31.183 73.213 22.144 1.00 0.00 S ATOM 649 C CYS 86 28.850 75.723 24.139 1.00 0.00 C ATOM 650 O CYS 86 27.660 76.029 24.113 1.00 0.00 O ATOM 651 N HIS 87 29.819 76.615 24.407 1.00 0.00 N ATOM 652 CA HIS 87 29.484 77.978 24.685 1.00 0.00 C ATOM 653 ND1 HIS 87 32.743 78.447 23.683 1.00 0.00 N ATOM 654 CG HIS 87 31.641 79.197 24.026 1.00 0.00 C ATOM 655 CB HIS 87 30.684 78.839 25.124 1.00 0.00 C ATOM 656 NE2 HIS 87 32.750 80.229 22.352 1.00 0.00 N ATOM 657 CD2 HIS 87 31.659 80.281 23.202 1.00 0.00 C ATOM 658 CE1 HIS 87 33.371 79.111 22.680 1.00 0.00 C ATOM 659 C HIS 87 28.907 78.570 23.440 1.00 0.00 C ATOM 660 O HIS 87 27.993 79.392 23.486 1.00 0.00 O ATOM 661 N ASP 88 29.445 78.142 22.287 1.00 0.00 N ATOM 662 CA ASP 88 29.050 78.611 20.991 1.00 0.00 C ATOM 663 CB ASP 88 29.978 78.109 19.879 1.00 0.00 C ATOM 664 CG ASP 88 31.270 78.901 20.035 1.00 0.00 C ATOM 665 OD1 ASP 88 31.206 80.159 20.023 1.00 0.00 O ATOM 666 OD2 ASP 88 32.343 78.263 20.189 1.00 0.00 O ATOM 667 C ASP 88 27.655 78.172 20.693 1.00 0.00 C ATOM 668 O ASP 88 26.982 78.759 19.847 1.00 0.00 O ATOM 669 N PHE 89 27.182 77.131 21.394 1.00 0.00 N ATOM 670 CA PHE 89 25.902 76.553 21.107 1.00 0.00 C ATOM 671 CB PHE 89 25.526 75.465 22.129 1.00 0.00 C ATOM 672 CG PHE 89 24.147 74.988 21.831 1.00 0.00 C ATOM 673 CD1 PHE 89 23.910 74.062 20.842 1.00 0.00 C ATOM 674 CD2 PHE 89 23.084 75.469 22.561 1.00 0.00 C ATOM 675 CE1 PHE 89 22.630 73.627 20.584 1.00 0.00 C ATOM 676 CE2 PHE 89 21.803 75.039 22.308 1.00 0.00 C ATOM 677 CZ PHE 89 21.575 74.116 21.317 1.00 0.00 C ATOM 678 C PHE 89 24.840 77.610 21.125 1.00 0.00 C ATOM 679 O PHE 89 24.009 77.656 20.221 1.00 0.00 O ATOM 680 N ASP 90 24.815 78.495 22.133 1.00 0.00 N ATOM 681 CA ASP 90 23.777 79.487 22.164 1.00 0.00 C ATOM 682 CB ASP 90 23.828 80.366 23.423 1.00 0.00 C ATOM 683 CG ASP 90 23.485 79.500 24.628 1.00 0.00 C ATOM 684 OD1 ASP 90 23.135 78.306 24.424 1.00 0.00 O ATOM 685 OD2 ASP 90 23.569 80.022 25.771 1.00 0.00 O ATOM 686 C ASP 90 23.910 80.409 20.987 1.00 0.00 C ATOM 687 O ASP 90 22.922 80.761 20.346 1.00 0.00 O ATOM 688 N GLU 91 25.140 80.835 20.660 1.00 0.00 N ATOM 689 CA GLU 91 25.271 81.752 19.568 1.00 0.00 C ATOM 690 CB GLU 91 26.734 82.157 19.320 1.00 0.00 C ATOM 691 CG GLU 91 27.361 82.942 20.470 1.00 0.00 C ATOM 692 CD GLU 91 28.840 83.144 20.157 1.00 0.00 C ATOM 693 OE1 GLU 91 29.284 82.683 19.071 1.00 0.00 O ATOM 694 OE2 GLU 91 29.545 83.758 20.999 1.00 0.00 O ATOM 695 C GLU 91 24.800 81.064 18.331 1.00 0.00 C ATOM 696 O GLU 91 24.040 81.629 17.545 1.00 0.00 O ATOM 697 N LEU 92 25.234 79.806 18.140 1.00 0.00 N ATOM 698 CA LEU 92 24.875 79.109 16.944 1.00 0.00 C ATOM 699 CB LEU 92 25.501 77.707 16.860 1.00 0.00 C ATOM 700 CG LEU 92 25.121 76.958 15.571 1.00 0.00 C ATOM 701 CD1 LEU 92 25.687 77.672 14.334 1.00 0.00 C ATOM 702 CD2 LEU 92 25.532 75.477 15.637 1.00 0.00 C ATOM 703 C LEU 92 23.386 78.947 16.925 1.00 0.00 C ATOM 704 O LEU 92 22.738 79.270 15.930 1.00 0.00 O ATOM 705 N CYS 93 22.805 78.459 18.042 1.00 0.00 N ATOM 706 CA CYS 93 21.381 78.290 18.143 1.00 0.00 C ATOM 707 CB CYS 93 20.955 76.840 18.410 1.00 0.00 C ATOM 708 SG CYS 93 21.017 75.834 16.901 1.00 0.00 S ATOM 709 C CYS 93 20.911 79.143 19.281 1.00 0.00 C ATOM 710 O CYS 93 21.232 78.884 20.438 1.00 0.00 O ATOM 711 N LEU 94 20.079 80.148 18.943 1.00 0.00 N ATOM 712 CA LEU 94 19.726 81.258 19.781 1.00 0.00 C ATOM 713 CB LEU 94 18.807 82.237 19.034 1.00 0.00 C ATOM 714 CG LEU 94 19.353 82.672 17.661 1.00 0.00 C ATOM 715 CD1 LEU 94 18.496 83.788 17.047 1.00 0.00 C ATOM 716 CD2 LEU 94 20.847 83.014 17.721 1.00 0.00 C ATOM 717 C LEU 94 19.031 80.974 21.092 1.00 0.00 C ATOM 718 O LEU 94 19.664 81.157 22.131 1.00 0.00 O ATOM 719 N LYS 95 17.765 80.474 21.120 1.00 0.00 N ATOM 720 CA LYS 95 17.114 80.453 22.416 1.00 0.00 C ATOM 721 CB LYS 95 17.217 81.838 23.119 1.00 0.00 C ATOM 722 CG LYS 95 16.542 82.065 24.480 1.00 0.00 C ATOM 723 CD LYS 95 15.053 82.428 24.423 1.00 0.00 C ATOM 724 CE LYS 95 14.759 83.733 23.681 1.00 0.00 C ATOM 725 NZ LYS 95 13.299 83.911 23.538 1.00 0.00 N ATOM 726 C LYS 95 15.663 80.087 22.305 1.00 0.00 C ATOM 727 O LYS 95 15.110 79.991 21.209 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 69.82 60.3 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 72.09 58.9 56 100.0 56 ARMSMC BURIED . . . . . . . . 63.68 63.6 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 75.83 50.0 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 76.84 48.6 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 86.51 36.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 42.50 81.8 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 67.09 60.9 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 60.38 58.8 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 73.73 61.1 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 33.69 60.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 89.30 11.1 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 89.97 12.5 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 88.49 14.3 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 92.10 0.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 48.13 60.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 48.13 60.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 27.27 75.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 92.79 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.14 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.14 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.0535 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 2.34 29 100.0 29 CRMSCA BURIED . . . . . . . . 1.49 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.26 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 2.44 142 100.0 142 CRMSMC BURIED . . . . . . . . 1.72 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 4.79 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 4.53 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 5.35 103 100.0 103 CRMSSC BURIED . . . . . . . . 2.86 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.59 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 3.99 219 100.0 219 CRMSALL BURIED . . . . . . . . 2.27 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.677 1.000 0.500 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 1.877 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 1.151 1.000 0.500 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.751 1.000 0.500 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 1.924 1.000 0.500 142 100.0 142 ERRMC BURIED . . . . . . . . 1.303 1.000 0.500 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.630 1.000 0.500 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 3.361 1.000 0.500 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 4.210 1.000 0.500 103 100.0 103 ERRSC BURIED . . . . . . . . 2.138 1.000 0.500 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.565 1.000 0.500 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 2.910 1.000 0.500 219 100.0 219 ERRALL BURIED . . . . . . . . 1.668 1.000 0.500 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 16 29 33 39 40 40 40 DISTCA CA (P) 40.00 72.50 82.50 97.50 100.00 40 DISTCA CA (RMS) 0.71 0.99 1.30 2.00 2.14 DISTCA ALL (N) 86 177 221 262 294 303 303 DISTALL ALL (P) 28.38 58.42 72.94 86.47 97.03 303 DISTALL ALL (RMS) 0.74 1.13 1.50 2.05 3.05 DISTALL END of the results output