####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 45 ( 221), selected 45 , name T0543TS477_1-D2 # Molecule2: number of CA atoms 45 ( 345), selected 45 , name T0543-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS477_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 45 96 - 140 4.53 4.53 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 39 100 - 138 1.88 5.25 LCS_AVERAGE: 78.86 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 115 - 130 0.95 5.39 LCS_AVERAGE: 24.44 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 45 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT T 96 T 96 3 9 45 0 3 6 7 7 8 9 10 10 10 10 12 15 26 36 36 36 38 44 44 LCS_GDT A 97 A 97 3 9 45 3 3 4 5 7 8 9 10 10 10 10 12 15 22 26 33 34 40 44 44 LCS_GDT R 98 R 98 3 9 45 3 3 6 7 7 8 9 10 13 14 14 16 30 32 36 38 43 43 44 44 LCS_GDT G 99 G 99 3 9 45 3 3 5 9 13 18 22 30 37 39 40 41 42 42 42 42 43 43 44 44 LCS_GDT W 100 W 100 5 39 45 4 5 9 17 27 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT E 101 E 101 5 39 45 4 5 16 25 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT C 102 C 102 5 39 45 4 5 6 7 23 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT T 103 T 103 5 39 45 4 5 7 16 30 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT K 104 K 104 5 39 45 4 5 13 21 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT D 105 D 105 3 39 45 3 4 6 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT R 106 R 106 4 39 45 3 12 24 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT C 107 C 107 4 39 45 5 13 22 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT G 108 G 108 8 39 45 3 7 9 24 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT E 109 E 109 8 39 45 3 6 8 28 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT V 110 V 110 11 39 45 7 15 24 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT R 111 R 111 11 39 45 4 12 24 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT N 112 N 112 11 39 45 3 5 11 26 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT E 113 E 113 11 39 45 4 9 23 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT E 114 E 114 11 39 45 3 9 24 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT N 115 N 115 16 39 45 10 18 24 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT A 116 A 116 16 39 45 10 18 24 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT C 117 C 117 16 39 45 4 14 24 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT H 118 H 118 16 39 45 4 18 24 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT C 119 C 119 16 39 45 8 18 24 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT S 120 S 120 16 39 45 6 18 24 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT E 121 E 121 16 39 45 7 18 24 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT D 122 D 122 16 39 45 7 18 24 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT C 123 C 123 16 39 45 7 18 24 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT L 124 L 124 16 39 45 3 15 24 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT S 125 S 125 16 39 45 4 14 24 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT R 126 R 126 16 39 45 4 11 21 28 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT G 127 G 127 16 39 45 4 12 21 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT D 128 D 128 16 39 45 7 18 24 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT C 129 C 129 16 39 45 10 18 24 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT C 130 C 130 16 39 45 7 18 24 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT T 131 T 131 14 39 45 5 18 24 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT N 132 N 132 14 39 45 10 18 24 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT Y 133 Y 133 14 39 45 10 18 24 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT Q 134 Q 134 14 39 45 10 18 24 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT V 135 V 135 14 39 45 10 18 24 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT V 136 V 136 14 39 45 10 18 24 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT C 137 C 137 14 39 45 10 18 24 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT K 138 K 138 14 39 45 10 18 24 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 LCS_GDT G 139 G 139 4 36 45 3 4 5 5 5 5 20 28 31 40 40 41 42 42 42 42 43 43 43 43 LCS_GDT E 140 E 140 4 4 45 3 4 5 5 5 5 19 28 31 35 40 41 42 42 42 42 43 43 44 44 LCS_AVERAGE LCS_A: 67.77 ( 24.44 78.86 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 18 24 29 33 37 38 39 39 40 40 41 42 42 42 42 43 43 44 44 GDT PERCENT_AT 22.22 40.00 53.33 64.44 73.33 82.22 84.44 86.67 86.67 88.89 88.89 91.11 93.33 93.33 93.33 93.33 95.56 95.56 97.78 97.78 GDT RMS_LOCAL 0.36 0.68 0.91 1.19 1.38 1.68 1.76 1.88 1.88 2.21 2.31 2.54 2.80 2.80 2.80 2.80 3.39 3.39 4.48 4.48 GDT RMS_ALL_AT 5.67 5.44 5.45 5.39 5.38 5.35 5.36 5.25 5.25 5.17 5.04 5.03 4.87 4.87 4.87 4.87 4.71 4.71 4.53 4.53 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA T 96 T 96 18.568 2 0.434 0.431 20.117 0.000 0.000 LGA A 97 A 97 17.726 0 0.563 0.532 19.414 0.000 0.000 LGA R 98 R 98 14.535 6 0.093 0.094 16.163 0.000 0.000 LGA G 99 G 99 9.072 0 0.661 0.661 11.498 5.357 5.357 LGA W 100 W 100 4.304 9 0.326 0.318 6.035 42.143 14.694 LGA E 101 E 101 2.570 4 0.194 0.267 4.372 53.690 27.989 LGA C 102 C 102 3.529 1 0.156 0.214 6.146 48.452 35.159 LGA T 103 T 103 3.289 2 0.054 0.092 5.442 55.476 35.442 LGA K 104 K 104 2.818 4 0.396 0.404 4.384 57.262 29.577 LGA D 105 D 105 2.075 3 0.256 0.251 2.890 70.833 42.560 LGA R 106 R 106 1.090 6 0.046 0.044 1.596 79.286 37.056 LGA C 107 C 107 2.136 1 0.648 0.583 3.015 65.119 52.937 LGA G 108 G 108 2.536 0 0.254 0.254 2.536 66.905 66.905 LGA E 109 E 109 2.602 4 0.459 0.510 3.725 57.500 31.111 LGA V 110 V 110 1.350 2 0.179 0.201 2.374 77.381 55.850 LGA R 111 R 111 1.971 6 0.039 0.044 2.072 70.833 31.645 LGA N 112 N 112 2.406 3 0.074 0.115 2.863 64.762 39.524 LGA E 113 E 113 2.036 4 0.087 0.086 2.350 70.952 38.730 LGA E 114 E 114 1.780 4 0.164 0.161 2.400 77.143 41.481 LGA N 115 N 115 0.564 3 0.073 0.097 1.109 90.476 55.417 LGA A 116 A 116 1.191 0 0.037 0.064 1.607 79.286 79.714 LGA C 117 C 117 1.769 1 0.100 0.160 2.408 77.143 62.222 LGA H 118 H 118 1.160 5 0.036 0.050 1.732 85.952 41.667 LGA C 119 C 119 0.814 1 0.515 0.487 1.706 88.452 72.540 LGA S 120 S 120 1.279 1 0.101 0.119 1.319 81.429 67.857 LGA E 121 E 121 1.107 4 0.141 0.145 1.229 83.690 46.243 LGA D 122 D 122 0.567 3 0.151 0.152 0.937 90.476 56.548 LGA C 123 C 123 0.827 1 0.078 0.080 1.626 95.238 75.635 LGA L 124 L 124 1.032 3 0.073 0.073 1.744 83.690 50.952 LGA S 125 S 125 1.792 1 0.264 0.271 2.170 75.000 60.794 LGA R 126 R 126 2.462 6 0.140 0.141 2.462 64.762 29.437 LGA G 127 G 127 1.730 0 0.090 0.090 2.006 77.381 77.381 LGA D 128 D 128 0.561 3 0.383 0.361 1.124 90.595 55.476 LGA C 129 C 129 0.720 1 0.059 0.124 0.980 90.476 75.397 LGA C 130 C 130 0.941 1 0.065 0.080 1.053 88.214 73.889 LGA T 131 T 131 1.870 2 0.110 0.111 2.584 72.976 49.864 LGA N 132 N 132 1.794 3 0.087 0.085 2.011 75.000 45.595 LGA Y 133 Y 133 0.489 7 0.079 0.085 0.889 95.238 40.079 LGA Q 134 Q 134 0.319 4 0.081 0.084 1.112 95.238 51.376 LGA V 135 V 135 1.430 2 0.050 0.051 1.960 77.143 54.490 LGA V 136 V 136 1.681 2 0.106 0.105 1.859 77.143 54.490 LGA C 137 C 137 1.274 1 0.173 0.183 1.349 85.952 70.873 LGA K 138 K 138 0.460 4 0.188 0.177 2.947 76.190 41.058 LGA G 139 G 139 7.888 0 0.380 0.380 9.656 9.167 9.167 LGA E 140 E 140 9.463 4 0.132 0.202 13.113 1.548 1.217 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 45 180 180 100.00 345 221 64.06 45 SUMMARY(RMSD_GDC): 4.528 4.395 4.558 66.021 44.120 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 45 45 4.0 39 1.88 71.111 76.938 1.969 LGA_LOCAL RMSD: 1.881 Number of atoms: 39 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 5.254 Number of assigned atoms: 45 Std_ASGN_ATOMS RMSD: 4.528 Standard rmsd on all 45 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.925786 * X + 0.228928 * Y + 0.300852 * Z + 16.443266 Y_new = 0.218618 * X + -0.973439 * Y + 0.067988 * Z + 71.734154 Z_new = 0.308425 * X + 0.002829 * Y + -0.951244 * Z + 10.502810 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.231895 -0.313537 3.138619 [DEG: 13.2866 -17.9644 179.8296 ] ZXZ: 1.793049 2.828042 1.561624 [DEG: 102.7341 162.0349 89.4745 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS477_1-D2 REMARK 2: T0543-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS477_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 45 45 4.0 39 1.88 76.938 4.53 REMARK ---------------------------------------------------------- MOLECULE T0543TS477_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT 2jq8_A 2gso_A 1zm8_A ATOM 208 N THR 96 -1.794 78.104 15.227 1.00 0.00 N ATOM 209 CA THR 96 -0.908 77.179 15.888 1.00 0.00 C ATOM 210 CB THR 96 -0.972 75.756 15.382 1.00 0.00 C ATOM 211 C THR 96 0.456 77.620 15.480 1.00 0.00 C ATOM 212 O THR 96 1.066 78.515 16.062 1.00 0.00 O ATOM 213 N ALA 97 0.945 76.938 14.427 1.00 0.00 N ATOM 214 CA ALA 97 2.197 77.178 13.773 1.00 0.00 C ATOM 215 CB ALA 97 2.546 76.107 12.724 1.00 0.00 C ATOM 216 C ALA 97 2.236 78.509 13.104 1.00 0.00 C ATOM 217 O ALA 97 3.205 78.823 12.414 1.00 0.00 O ATOM 218 N ARG 98 1.198 79.344 13.285 1.00 0.00 N ATOM 219 CA ARG 98 1.328 80.627 12.664 1.00 0.00 C ATOM 220 CB ARG 98 -0.022 81.273 12.308 1.00 0.00 C ATOM 221 C ARG 98 2.029 81.547 13.619 1.00 0.00 C ATOM 222 O ARG 98 2.418 82.649 13.246 1.00 0.00 O ATOM 223 N GLY 99 2.224 81.118 14.881 1.00 0.00 N ATOM 224 CA GLY 99 2.862 81.945 15.873 1.00 0.00 C ATOM 225 C GLY 99 4.294 81.572 16.054 1.00 0.00 C ATOM 226 O GLY 99 4.963 82.019 16.990 1.00 0.00 O ATOM 227 N TRP 100 4.789 80.705 15.153 1.00 0.00 N ATOM 228 CA TRP 100 6.113 80.193 15.320 1.00 0.00 C ATOM 229 CB TRP 100 6.570 79.288 14.163 1.00 0.00 C ATOM 230 C TRP 100 7.063 81.333 15.398 1.00 0.00 C ATOM 231 O TRP 100 7.868 81.440 16.324 1.00 0.00 O ATOM 232 N GLU 101 6.967 82.225 14.404 1.00 0.00 N ATOM 233 CA GLU 101 7.793 83.385 14.340 1.00 0.00 C ATOM 234 CB GLU 101 9.077 83.164 13.524 1.00 0.00 C ATOM 235 C GLU 101 7.019 84.487 13.695 1.00 0.00 C ATOM 236 O GLU 101 5.827 84.331 13.434 1.00 0.00 O ATOM 237 N CYS 102 7.659 85.638 13.398 1.00 0.00 N ATOM 238 CA CYS 102 6.889 86.589 12.657 1.00 0.00 C ATOM 239 CB CYS 102 6.398 87.799 13.462 1.00 0.00 C ATOM 240 C CYS 102 7.722 87.080 11.521 1.00 0.00 C ATOM 241 O CYS 102 8.717 87.776 11.714 1.00 0.00 O ATOM 242 N THR 103 7.312 86.731 10.286 1.00 0.00 N ATOM 243 CA THR 103 8.053 87.132 9.132 1.00 0.00 C ATOM 244 CB THR 103 8.402 85.981 8.243 1.00 0.00 C ATOM 245 C THR 103 7.230 88.122 8.372 1.00 0.00 C ATOM 246 O THR 103 6.007 88.007 8.293 1.00 0.00 O ATOM 247 N LYS 104 7.910 89.145 7.811 1.00 0.00 N ATOM 248 CA LYS 104 7.262 90.217 7.105 1.00 0.00 C ATOM 249 CB LYS 104 7.487 91.599 7.740 1.00 0.00 C ATOM 250 C LYS 104 7.879 90.289 5.745 1.00 0.00 C ATOM 251 O LYS 104 7.770 89.355 4.952 1.00 0.00 O ATOM 252 N ASP 105 8.509 91.441 5.426 1.00 0.00 N ATOM 253 CA ASP 105 9.140 91.618 4.148 1.00 0.00 C ATOM 254 CB ASP 105 9.176 93.091 3.700 1.00 0.00 C ATOM 255 C ASP 105 10.558 91.149 4.281 1.00 0.00 C ATOM 256 O ASP 105 11.467 91.623 3.603 1.00 0.00 O ATOM 257 N ARG 106 10.747 90.171 5.176 1.00 0.00 N ATOM 258 CA ARG 106 11.965 89.498 5.521 1.00 0.00 C ATOM 259 CB ARG 106 11.787 88.634 6.778 1.00 0.00 C ATOM 260 C ARG 106 12.356 88.575 4.405 1.00 0.00 C ATOM 261 O ARG 106 13.400 87.928 4.464 1.00 0.00 O ATOM 262 N CYS 107 11.414 88.308 3.488 1.00 0.00 N ATOM 263 CA CYS 107 11.624 87.447 2.352 1.00 0.00 C ATOM 264 CB CYS 107 10.306 86.908 1.769 1.00 0.00 C ATOM 265 C CYS 107 12.379 88.121 1.241 1.00 0.00 C ATOM 266 O CYS 107 12.955 87.446 0.393 1.00 0.00 O ATOM 267 N GLY 108 12.275 89.457 1.122 1.00 0.00 N ATOM 268 CA GLY 108 12.902 90.160 0.035 1.00 0.00 C ATOM 269 C GLY 108 14.396 90.278 0.122 1.00 0.00 C ATOM 270 O GLY 108 15.096 90.042 -0.863 1.00 0.00 O ATOM 271 N GLU 109 14.930 90.664 1.297 1.00 0.00 N ATOM 272 CA GLU 109 16.324 90.995 1.343 1.00 0.00 C ATOM 273 CB GLU 109 16.773 91.344 2.769 1.00 0.00 C ATOM 274 C GLU 109 17.147 89.813 0.954 1.00 0.00 C ATOM 275 O GLU 109 17.667 89.756 -0.158 1.00 0.00 O ATOM 276 N VAL 110 17.202 88.805 1.849 1.00 0.00 N ATOM 277 CA VAL 110 17.996 87.620 1.673 1.00 0.00 C ATOM 278 CB VAL 110 19.506 87.835 1.814 1.00 0.00 C ATOM 279 C VAL 110 17.632 86.798 2.874 1.00 0.00 C ATOM 280 O VAL 110 16.827 87.227 3.699 1.00 0.00 O ATOM 281 N ARG 111 18.211 85.590 3.000 1.00 0.00 N ATOM 282 CA ARG 111 17.969 84.769 4.140 1.00 0.00 C ATOM 283 CB ARG 111 18.463 83.332 3.916 1.00 0.00 C ATOM 284 C ARG 111 18.756 85.350 5.270 1.00 0.00 C ATOM 285 O ARG 111 19.950 85.613 5.134 1.00 0.00 O ATOM 286 N ASN 112 18.095 85.579 6.422 1.00 0.00 N ATOM 287 CA ASN 112 18.798 86.071 7.570 1.00 0.00 C ATOM 288 CB ASN 112 17.963 86.943 8.526 1.00 0.00 C ATOM 289 C ASN 112 19.197 84.887 8.371 1.00 0.00 C ATOM 290 O ASN 112 18.380 84.284 9.067 1.00 0.00 O ATOM 291 N GLU 113 20.482 84.521 8.278 1.00 0.00 N ATOM 292 CA GLU 113 20.995 83.429 9.049 1.00 0.00 C ATOM 293 CB GLU 113 22.433 83.049 8.660 1.00 0.00 C ATOM 294 C GLU 113 21.015 83.862 10.484 1.00 0.00 C ATOM 295 O GLU 113 20.920 83.044 11.398 1.00 0.00 O ATOM 296 N GLU 114 21.204 85.177 10.703 1.00 0.00 N ATOM 297 CA GLU 114 21.343 85.769 12.006 1.00 0.00 C ATOM 298 CB GLU 114 21.799 87.236 11.934 1.00 0.00 C ATOM 299 C GLU 114 20.083 85.748 12.830 1.00 0.00 C ATOM 300 O GLU 114 20.149 85.515 14.033 1.00 0.00 O ATOM 301 N ASN 115 18.905 85.977 12.222 1.00 0.00 N ATOM 302 CA ASN 115 17.676 86.188 12.949 1.00 0.00 C ATOM 303 CB ASN 115 16.561 86.753 12.045 1.00 0.00 C ATOM 304 C ASN 115 17.158 84.951 13.625 1.00 0.00 C ATOM 305 O ASN 115 17.600 83.833 13.363 1.00 0.00 O ATOM 306 N ALA 116 16.223 85.167 14.585 1.00 0.00 N ATOM 307 CA ALA 116 15.562 84.134 15.334 1.00 0.00 C ATOM 308 CB ALA 116 14.631 84.693 16.422 1.00 0.00 C ATOM 309 C ALA 116 14.720 83.322 14.399 1.00 0.00 C ATOM 310 O ALA 116 14.672 82.098 14.508 1.00 0.00 O ATOM 311 N CYS 117 14.003 83.986 13.470 1.00 0.00 N ATOM 312 CA CYS 117 13.232 83.257 12.508 1.00 0.00 C ATOM 313 CB CYS 117 11.713 83.309 12.719 1.00 0.00 C ATOM 314 C CYS 117 13.510 83.878 11.181 1.00 0.00 C ATOM 315 O CYS 117 13.740 85.083 11.094 1.00 0.00 O ATOM 316 N HIS 118 13.503 83.078 10.096 1.00 0.00 N ATOM 317 CA HIS 118 13.842 83.699 8.853 1.00 0.00 C ATOM 318 CB HIS 118 15.336 83.589 8.485 1.00 0.00 C ATOM 319 C HIS 118 12.993 83.194 7.734 1.00 0.00 C ATOM 320 O HIS 118 12.303 82.180 7.847 1.00 0.00 O ATOM 321 N CYS 119 12.976 83.973 6.632 1.00 0.00 N ATOM 322 CA CYS 119 12.250 83.589 5.458 1.00 0.00 C ATOM 323 CB CYS 119 10.906 84.311 5.275 1.00 0.00 C ATOM 324 C CYS 119 13.081 83.930 4.266 1.00 0.00 C ATOM 325 O CYS 119 13.592 85.043 4.136 1.00 0.00 O ATOM 326 N SER 120 13.239 82.953 3.360 1.00 0.00 N ATOM 327 CA SER 120 13.986 83.195 2.165 1.00 0.00 C ATOM 328 CB SER 120 15.510 83.164 2.392 1.00 0.00 C ATOM 329 C SER 120 13.644 82.092 1.224 1.00 0.00 C ATOM 330 O SER 120 12.889 81.179 1.554 1.00 0.00 O ATOM 331 N GLU 121 14.173 82.175 -0.005 1.00 0.00 N ATOM 332 CA GLU 121 13.976 81.134 -0.954 1.00 0.00 C ATOM 333 CB GLU 121 14.616 81.437 -2.316 1.00 0.00 C ATOM 334 C GLU 121 14.661 79.939 -0.390 1.00 0.00 C ATOM 335 O GLU 121 14.210 78.807 -0.559 1.00 0.00 O ATOM 336 N ASP 122 15.789 80.176 0.307 1.00 0.00 N ATOM 337 CA ASP 122 16.547 79.092 0.850 1.00 0.00 C ATOM 338 CB ASP 122 18.026 79.453 1.067 1.00 0.00 C ATOM 339 C ASP 122 15.988 78.717 2.183 1.00 0.00 C ATOM 340 O ASP 122 16.717 78.218 3.038 1.00 0.00 O ATOM 341 N CYS 123 14.676 78.923 2.405 1.00 0.00 N ATOM 342 CA CYS 123 14.157 78.539 3.681 1.00 0.00 C ATOM 343 CB CYS 123 12.737 79.055 4.010 1.00 0.00 C ATOM 344 C CYS 123 14.185 77.046 3.721 1.00 0.00 C ATOM 345 O CYS 123 14.379 76.449 4.775 1.00 0.00 O ATOM 346 N LEU 124 13.970 76.412 2.550 1.00 0.00 N ATOM 347 CA LEU 124 13.986 74.984 2.426 1.00 0.00 C ATOM 348 CB LEU 124 13.575 74.531 1.006 1.00 0.00 C ATOM 349 C LEU 124 15.385 74.524 2.701 1.00 0.00 C ATOM 350 O LEU 124 15.595 73.502 3.351 1.00 0.00 O ATOM 351 N SER 125 16.386 75.279 2.209 1.00 0.00 N ATOM 352 CA SER 125 17.751 74.865 2.354 1.00 0.00 C ATOM 353 CB SER 125 18.748 75.888 1.781 1.00 0.00 C ATOM 354 C SER 125 18.081 74.690 3.804 1.00 0.00 C ATOM 355 O SER 125 18.397 73.584 4.245 1.00 0.00 O ATOM 356 N ARG 126 18.008 75.786 4.585 1.00 0.00 N ATOM 357 CA ARG 126 18.317 75.731 5.987 1.00 0.00 C ATOM 358 CB ARG 126 18.401 77.112 6.660 1.00 0.00 C ATOM 359 C ARG 126 17.274 74.927 6.687 1.00 0.00 C ATOM 360 O ARG 126 17.563 74.223 7.651 1.00 0.00 O ATOM 361 N GLY 127 16.019 75.015 6.217 1.00 0.00 N ATOM 362 CA GLY 127 14.953 74.296 6.842 1.00 0.00 C ATOM 363 C GLY 127 14.452 75.115 7.986 1.00 0.00 C ATOM 364 O GLY 127 13.836 74.587 8.912 1.00 0.00 O ATOM 365 N ASP 128 14.730 76.437 7.965 1.00 0.00 N ATOM 366 CA ASP 128 14.273 77.271 9.038 1.00 0.00 C ATOM 367 CB ASP 128 15.417 77.863 9.876 1.00 0.00 C ATOM 368 C ASP 128 13.493 78.422 8.481 1.00 0.00 C ATOM 369 O ASP 128 14.053 79.459 8.130 1.00 0.00 O ATOM 370 N CYS 129 12.159 78.263 8.381 1.00 0.00 N ATOM 371 CA CYS 129 11.337 79.350 7.946 1.00 0.00 C ATOM 372 CB CYS 129 10.965 79.300 6.443 1.00 0.00 C ATOM 373 C CYS 129 10.123 79.397 8.820 1.00 0.00 C ATOM 374 O CYS 129 9.681 78.374 9.341 1.00 0.00 O ATOM 375 N CYS 130 9.577 80.617 9.021 1.00 0.00 N ATOM 376 CA CYS 130 8.439 80.835 9.874 1.00 0.00 C ATOM 377 CB CYS 130 8.101 82.315 10.137 1.00 0.00 C ATOM 378 C CYS 130 7.212 80.269 9.240 1.00 0.00 C ATOM 379 O CYS 130 7.191 79.878 8.072 1.00 0.00 O ATOM 380 N THR 131 6.149 80.186 10.059 1.00 0.00 N ATOM 381 CA THR 131 4.875 79.696 9.634 1.00 0.00 C ATOM 382 CB THR 131 3.902 79.545 10.768 1.00 0.00 C ATOM 383 C THR 131 4.291 80.652 8.644 1.00 0.00 C ATOM 384 O THR 131 3.661 80.233 7.673 1.00 0.00 O ATOM 385 N ASN 132 4.485 81.971 8.857 1.00 0.00 N ATOM 386 CA ASN 132 3.857 82.912 7.976 1.00 0.00 C ATOM 387 CB ASN 132 3.505 84.236 8.677 1.00 0.00 C ATOM 388 C ASN 132 4.744 83.198 6.806 1.00 0.00 C ATOM 389 O ASN 132 4.585 84.216 6.133 1.00 0.00 O ATOM 390 N TYR 133 5.682 82.280 6.511 1.00 0.00 N ATOM 391 CA TYR 133 6.531 82.406 5.365 1.00 0.00 C ATOM 392 CB TYR 133 7.616 81.310 5.345 1.00 0.00 C ATOM 393 C TYR 133 5.688 82.270 4.139 1.00 0.00 C ATOM 394 O TYR 133 5.792 83.052 3.193 1.00 0.00 O ATOM 395 N GLN 134 4.805 81.259 4.132 1.00 0.00 N ATOM 396 CA GLN 134 3.985 81.029 2.979 1.00 0.00 C ATOM 397 CB GLN 134 3.129 79.757 3.102 1.00 0.00 C ATOM 398 C GLN 134 3.052 82.184 2.818 1.00 0.00 C ATOM 399 O GLN 134 2.817 82.646 1.701 1.00 0.00 O ATOM 400 N VAL 135 2.483 82.672 3.937 1.00 0.00 N ATOM 401 CA VAL 135 1.521 83.727 3.827 1.00 0.00 C ATOM 402 CB VAL 135 0.890 84.073 5.142 1.00 0.00 C ATOM 403 C VAL 135 2.150 84.980 3.301 1.00 0.00 C ATOM 404 O VAL 135 1.707 85.519 2.287 1.00 0.00 O ATOM 405 N VAL 136 3.202 85.485 3.981 1.00 0.00 N ATOM 406 CA VAL 136 3.764 86.742 3.579 1.00 0.00 C ATOM 407 CB VAL 136 4.695 87.318 4.613 1.00 0.00 C ATOM 408 C VAL 136 4.488 86.667 2.265 1.00 0.00 C ATOM 409 O VAL 136 4.156 87.407 1.341 1.00 0.00 O ATOM 410 N CYS 137 5.507 85.784 2.148 1.00 0.00 N ATOM 411 CA CYS 137 6.304 85.723 0.951 1.00 0.00 C ATOM 412 CB CYS 137 7.619 84.947 1.141 1.00 0.00 C ATOM 413 C CYS 137 5.550 85.131 -0.206 1.00 0.00 C ATOM 414 O CYS 137 5.492 85.721 -1.284 1.00 0.00 O ATOM 415 N LYS 138 4.919 83.963 0.041 1.00 0.00 N ATOM 416 CA LYS 138 4.115 83.112 -0.808 1.00 0.00 C ATOM 417 CB LYS 138 3.005 83.846 -1.592 1.00 0.00 C ATOM 418 C LYS 138 4.904 82.230 -1.740 1.00 0.00 C ATOM 419 O LYS 138 4.328 81.254 -2.214 1.00 0.00 O ATOM 420 N GLY 139 6.203 82.522 -2.015 1.00 0.00 N ATOM 421 CA GLY 139 7.151 81.658 -2.691 1.00 0.00 C ATOM 422 C GLY 139 6.516 80.791 -3.727 1.00 0.00 C ATOM 423 O GLY 139 6.383 79.593 -3.481 1.00 0.00 O ATOM 424 N GLU 140 6.077 81.354 -4.872 1.00 0.00 N ATOM 425 CA GLU 140 5.428 80.534 -5.859 1.00 0.00 C ATOM 426 CB GLU 140 3.911 80.758 -5.932 1.00 0.00 C ATOM 427 C GLU 140 6.020 80.879 -7.187 1.00 0.00 C ATOM 428 O GLU 140 6.259 82.043 -7.502 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 221 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 57.86 62.5 88 100.0 88 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 63.66 54.8 62 100.0 62 ARMSMC BURIED . . . . . . . . 40.83 80.8 26 100.0 26 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 39 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 36 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 26 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 18 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 4.53 (Number of atoms: 45) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 4.53 45 100.0 45 CRMSCA CRN = ALL/NP . . . . . 0.1006 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 5.02 32 100.0 32 CRMSCA BURIED . . . . . . . . 2.98 13 100.0 13 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 4.56 221 100.0 221 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 5.04 156 100.0 156 CRMSMC BURIED . . . . . . . . 3.13 65 100.0 65 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 5.21 41 24.8 165 CRMSSC RELIABLE SIDE CHAINS . 5.21 41 28.3 145 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 5.83 28 25.0 112 CRMSSC BURIED . . . . . . . . 3.53 13 24.5 53 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 4.56 221 64.1 345 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 5.04 156 65.0 240 CRMSALL BURIED . . . . . . . . 3.13 65 61.9 105 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.620 1.000 0.500 45 100.0 45 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 3.989 1.000 0.500 32 100.0 32 ERRCA BURIED . . . . . . . . 2.712 1.000 0.500 13 100.0 13 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.628 1.000 0.500 221 100.0 221 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 3.978 1.000 0.500 156 100.0 156 ERRMC BURIED . . . . . . . . 2.786 1.000 0.500 65 100.0 65 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.098 1.000 0.500 41 24.8 165 ERRSC RELIABLE SIDE CHAINS . 4.098 1.000 0.500 41 28.3 145 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 4.571 1.000 0.500 28 25.0 112 ERRSC BURIED . . . . . . . . 3.078 1.000 0.500 13 24.5 53 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.628 1.000 0.500 221 64.1 345 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 3.978 1.000 0.500 156 65.0 240 ERRALL BURIED . . . . . . . . 2.786 1.000 0.500 65 61.9 105 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 2 14 22 38 42 45 45 DISTCA CA (P) 4.44 31.11 48.89 84.44 93.33 45 DISTCA CA (RMS) 0.84 1.64 1.97 2.93 3.28 DISTCA ALL (N) 11 63 111 184 208 221 345 DISTALL ALL (P) 3.19 18.26 32.17 53.33 60.29 345 DISTALL ALL (RMS) 0.79 1.54 2.01 2.86 3.43 DISTALL END of the results output