####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 197), selected 40 , name T0543TS477_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS477_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 56 - 95 2.30 2.30 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 28 67 - 94 1.89 2.37 LCS_AVERAGE: 57.31 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 72 - 86 0.96 3.48 LONGEST_CONTINUOUS_SEGMENT: 15 73 - 87 0.99 3.13 LCS_AVERAGE: 27.31 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 7 10 40 3 6 18 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT S 57 S 57 7 10 40 3 17 22 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 58 C 58 7 10 40 9 17 22 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT K 59 K 59 7 10 40 4 17 22 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT G 60 G 60 7 10 40 3 7 22 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT R 61 R 61 7 10 40 10 16 22 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 62 C 62 7 10 40 3 13 22 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT F 63 F 63 4 10 40 3 4 6 6 30 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT E 64 E 64 4 10 40 3 4 9 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT L 65 L 65 5 10 40 4 5 20 27 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT Q 66 Q 66 5 8 40 4 5 5 6 12 21 31 34 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT E 67 E 67 5 28 40 4 5 21 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT V 68 V 68 5 28 40 4 5 5 26 32 36 36 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT G 69 G 69 5 28 40 3 5 17 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT P 70 P 70 7 28 40 2 3 11 17 20 25 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT P 71 P 71 7 28 40 3 5 11 17 27 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT D 72 D 72 15 28 40 4 5 15 29 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 73 C 73 15 28 40 4 17 22 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT R 74 R 74 15 28 40 5 17 22 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 75 C 75 15 28 40 10 16 22 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT D 76 D 76 15 28 40 4 12 21 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT N 77 N 77 15 28 40 4 6 21 27 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT L 78 L 78 15 28 40 9 17 22 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 79 C 79 15 28 40 9 17 22 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT K 80 K 80 15 28 40 5 7 15 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT S 81 S 81 15 28 40 5 14 22 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT Y 82 Y 82 15 28 40 5 14 22 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT S 83 S 83 15 28 40 5 14 22 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT S 84 S 84 15 28 40 6 17 22 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 85 C 85 15 28 40 9 17 22 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 86 C 86 15 28 40 10 17 22 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT H 87 H 87 15 28 40 9 16 22 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT D 88 D 88 14 28 40 10 17 22 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT F 89 F 89 14 28 40 10 17 22 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT D 90 D 90 14 28 40 10 17 22 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT E 91 E 91 14 28 40 10 17 22 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT L 92 L 92 14 28 40 10 17 22 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 93 C 93 14 28 40 10 17 22 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT L 94 L 94 14 28 40 10 17 22 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT K 95 K 95 3 25 40 3 3 3 5 6 7 27 32 37 38 39 40 40 40 40 40 40 40 40 40 LCS_AVERAGE LCS_A: 61.54 ( 27.31 57.31 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 17 22 30 34 36 37 37 38 39 39 40 40 40 40 40 40 40 40 40 GDT PERCENT_AT 25.00 42.50 55.00 75.00 85.00 90.00 92.50 92.50 95.00 97.50 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.26 0.69 0.93 1.34 1.52 1.64 1.86 1.77 1.94 2.11 2.11 2.30 2.30 2.30 2.30 2.30 2.30 2.30 2.30 2.30 GDT RMS_ALL_AT 3.16 2.54 2.56 2.37 2.34 2.37 2.33 2.33 2.32 2.32 2.32 2.30 2.30 2.30 2.30 2.30 2.30 2.30 2.30 2.30 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 1.863 0 0.096 0.096 2.464 72.976 72.976 LGA S 57 S 57 1.358 1 0.161 0.195 1.445 81.429 67.857 LGA C 58 C 58 1.402 1 0.508 0.485 3.047 71.429 61.190 LGA K 59 K 59 0.905 4 0.459 0.533 3.908 74.286 41.111 LGA G 60 G 60 1.900 0 0.160 0.160 2.815 68.929 68.929 LGA R 61 R 61 1.763 6 0.038 0.044 1.811 72.857 33.117 LGA C 62 C 62 1.707 1 0.640 0.576 2.411 72.976 59.444 LGA F 63 F 63 2.951 6 0.357 0.339 4.575 67.024 27.229 LGA E 64 E 64 1.806 4 0.539 0.559 2.852 69.048 37.884 LGA L 65 L 65 2.460 3 0.692 0.664 4.314 54.524 34.405 LGA Q 66 Q 66 5.649 4 0.070 0.116 8.020 40.000 18.307 LGA E 67 E 67 2.002 4 0.076 0.108 4.717 57.738 29.153 LGA V 68 V 68 3.284 2 0.147 0.223 6.006 63.095 38.503 LGA G 69 G 69 1.756 0 0.602 0.602 2.934 66.905 66.905 LGA P 70 P 70 5.314 2 0.078 0.071 8.027 34.524 20.408 LGA P 71 P 71 4.123 2 0.266 0.263 5.743 45.357 28.980 LGA D 72 D 72 2.519 3 0.200 0.251 3.433 61.190 36.845 LGA C 73 C 73 0.750 1 0.218 0.286 1.327 88.214 73.889 LGA R 74 R 74 0.822 6 0.047 0.054 0.876 90.476 41.126 LGA C 75 C 75 1.247 1 0.492 0.465 1.790 83.690 67.937 LGA D 76 D 76 1.998 3 0.082 0.080 2.090 68.810 42.500 LGA N 77 N 77 2.523 3 0.110 0.106 3.223 66.905 39.702 LGA L 78 L 78 0.635 3 0.123 0.139 1.722 88.214 53.214 LGA C 79 C 79 1.146 1 0.041 0.058 1.895 85.952 69.444 LGA K 80 K 80 1.962 4 0.034 0.033 2.539 72.976 38.783 LGA S 81 S 81 2.087 1 0.080 0.075 2.233 66.786 55.317 LGA Y 82 Y 82 1.771 7 0.126 0.121 1.803 75.000 31.071 LGA S 83 S 83 1.576 1 0.165 0.171 2.100 81.667 65.238 LGA S 84 S 84 0.431 1 0.397 0.372 1.692 88.452 75.635 LGA C 85 C 85 0.525 1 0.029 0.031 1.257 90.595 77.063 LGA C 86 C 86 1.396 1 0.061 0.086 1.425 81.429 67.857 LGA H 87 H 87 1.757 5 0.058 0.057 2.275 77.143 37.333 LGA D 88 D 88 0.167 3 0.156 0.154 0.934 97.619 60.119 LGA F 89 F 89 0.189 6 0.072 0.081 0.425 100.000 45.455 LGA D 90 D 90 1.219 3 0.019 0.057 1.766 81.548 49.881 LGA E 91 E 91 1.214 4 0.053 0.063 1.459 81.429 45.238 LGA L 92 L 92 0.855 3 0.160 0.165 0.879 92.857 57.738 LGA C 93 C 93 0.553 1 0.079 0.075 0.960 90.476 76.984 LGA L 94 L 94 0.978 3 0.111 0.117 3.721 73.929 42.381 LGA K 95 K 95 6.384 4 0.569 0.595 8.651 25.952 11.852 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 197 65.02 40 SUMMARY(RMSD_GDC): 2.304 2.154 2.427 73.110 49.225 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 37 1.77 77.500 76.806 1.976 LGA_LOCAL RMSD: 1.772 Number of atoms: 37 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.330 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 2.304 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.040011 * X + -0.887302 * Y + 0.459450 * Z + 11.697265 Y_new = 0.848127 * X + -0.212949 * Y + -0.485112 * Z + 83.371521 Z_new = 0.528280 * X + 0.409082 * Y + 0.744024 * Z + 41.358459 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.523656 -0.556574 0.502707 [DEG: 87.2990 -31.8893 28.8030 ] ZXZ: 0.758237 0.731723 0.911883 [DEG: 43.4438 41.9246 52.2470 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS477_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS477_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 37 1.77 76.806 2.30 REMARK ---------------------------------------------------------- MOLECULE T0543TS477_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT 2jq8_A 2gso_A 1zm8_A ATOM 11 N GLY 56 35.950 72.320 17.023 1.00 0.00 N ATOM 12 CA GLY 56 35.118 71.610 17.945 1.00 0.00 C ATOM 13 C GLY 56 34.073 72.558 18.438 1.00 0.00 C ATOM 14 O GLY 56 33.355 72.262 19.391 1.00 0.00 O ATOM 15 N SER 57 33.968 73.734 17.793 1.00 0.00 N ATOM 16 CA SER 57 32.994 74.711 18.179 1.00 0.00 C ATOM 17 CB SER 57 33.268 76.100 17.576 1.00 0.00 C ATOM 18 C SER 57 31.664 74.231 17.681 1.00 0.00 C ATOM 19 O SER 57 31.609 73.288 16.895 1.00 0.00 O ATOM 20 N CYS 58 30.556 74.856 18.145 1.00 0.00 N ATOM 21 CA CYS 58 29.228 74.451 17.748 1.00 0.00 C ATOM 22 CB CYS 58 28.071 74.943 18.658 1.00 0.00 C ATOM 23 C CYS 58 28.837 75.177 16.504 1.00 0.00 C ATOM 24 O CYS 58 28.504 76.357 16.591 1.00 0.00 O ATOM 25 N LYS 59 29.002 74.607 15.295 1.00 0.00 N ATOM 26 CA LYS 59 28.333 75.316 14.236 1.00 0.00 C ATOM 27 CB LYS 59 29.105 75.229 12.911 1.00 0.00 C ATOM 28 C LYS 59 26.932 74.802 13.980 1.00 0.00 C ATOM 29 O LYS 59 25.933 75.283 14.510 1.00 0.00 O ATOM 30 N GLY 60 26.910 73.727 13.150 1.00 0.00 N ATOM 31 CA GLY 60 25.845 72.938 12.564 1.00 0.00 C ATOM 32 C GLY 60 25.274 71.885 13.458 1.00 0.00 C ATOM 33 O GLY 60 24.141 71.440 13.278 1.00 0.00 O ATOM 34 N ARG 61 26.087 71.449 14.424 1.00 0.00 N ATOM 35 CA ARG 61 25.958 70.290 15.260 1.00 0.00 C ATOM 36 CB ARG 61 27.208 70.085 16.131 1.00 0.00 C ATOM 37 C ARG 61 24.727 70.311 16.119 1.00 0.00 C ATOM 38 O ARG 61 24.596 69.472 17.006 1.00 0.00 O ATOM 39 N CYS 62 23.934 71.391 16.073 1.00 0.00 N ATOM 40 CA CYS 62 22.688 71.448 16.791 1.00 0.00 C ATOM 41 CB CYS 62 22.232 72.882 17.116 1.00 0.00 C ATOM 42 C CYS 62 21.555 70.759 16.076 1.00 0.00 C ATOM 43 O CYS 62 20.529 70.481 16.691 1.00 0.00 O ATOM 44 N PHE 63 21.628 70.623 14.735 1.00 0.00 N ATOM 45 CA PHE 63 20.560 70.038 13.962 1.00 0.00 C ATOM 46 CB PHE 63 20.677 70.374 12.466 1.00 0.00 C ATOM 47 C PHE 63 20.462 68.542 14.061 1.00 0.00 C ATOM 48 O PHE 63 19.381 67.997 14.283 1.00 0.00 O ATOM 49 N GLU 64 21.602 67.841 13.901 1.00 0.00 N ATOM 50 CA GLU 64 21.586 66.411 13.765 1.00 0.00 C ATOM 51 CB GLU 64 23.007 65.840 13.659 1.00 0.00 C ATOM 52 C GLU 64 21.007 65.769 14.980 1.00 0.00 C ATOM 53 O GLU 64 19.975 65.104 14.903 1.00 0.00 O ATOM 54 N LEU 65 21.650 65.992 16.142 1.00 0.00 N ATOM 55 CA LEU 65 21.241 65.347 17.353 1.00 0.00 C ATOM 56 CB LEU 65 20.972 63.834 17.107 1.00 0.00 C ATOM 57 C LEU 65 22.382 65.555 18.295 1.00 0.00 C ATOM 58 O LEU 65 23.447 66.015 17.880 1.00 0.00 O ATOM 59 N GLN 66 22.186 65.267 19.595 1.00 0.00 N ATOM 60 CA GLN 66 23.272 65.445 20.506 1.00 0.00 C ATOM 61 CB GLN 66 22.890 65.218 21.980 1.00 0.00 C ATOM 62 C GLN 66 24.324 64.452 20.162 1.00 0.00 C ATOM 63 O GLN 66 24.075 63.250 20.088 1.00 0.00 O ATOM 64 N GLU 67 25.552 64.943 19.931 1.00 0.00 N ATOM 65 CA GLU 67 26.591 64.014 19.650 1.00 0.00 C ATOM 66 CB GLU 67 27.669 64.559 18.697 1.00 0.00 C ATOM 67 C GLU 67 27.224 63.749 20.964 1.00 0.00 C ATOM 68 O GLU 67 27.952 64.581 21.499 1.00 0.00 O ATOM 69 N VAL 68 26.932 62.576 21.541 1.00 0.00 N ATOM 70 CA VAL 68 27.547 62.257 22.785 1.00 0.00 C ATOM 71 CB VAL 68 26.701 61.384 23.662 1.00 0.00 C ATOM 72 C VAL 68 28.764 61.509 22.402 1.00 0.00 C ATOM 73 O VAL 68 28.722 60.668 21.509 1.00 0.00 O ATOM 74 N GLY 69 29.904 61.810 23.041 1.00 0.00 N ATOM 75 CA GLY 69 31.091 61.135 22.627 1.00 0.00 C ATOM 76 C GLY 69 32.005 62.082 21.907 1.00 0.00 C ATOM 77 O GLY 69 33.184 61.755 21.781 1.00 0.00 O ATOM 78 N PRO 70 31.606 63.229 21.414 1.00 0.00 N ATOM 79 CA PRO 70 32.636 64.025 20.826 1.00 0.00 C ATOM 80 CB PRO 70 31.950 65.110 19.993 1.00 0.00 C ATOM 81 C PRO 70 33.574 64.496 21.879 1.00 0.00 C ATOM 82 O PRO 70 33.134 65.082 22.869 1.00 0.00 O ATOM 83 N PRO 71 34.838 64.271 21.660 1.00 0.00 N ATOM 84 CA PRO 71 35.847 64.661 22.599 1.00 0.00 C ATOM 85 CB PRO 71 37.174 64.341 21.918 1.00 0.00 C ATOM 86 C PRO 71 35.687 66.128 22.777 1.00 0.00 C ATOM 87 O PRO 71 36.028 66.651 23.836 1.00 0.00 O ATOM 88 N ASP 72 35.185 66.807 21.731 1.00 0.00 N ATOM 89 CA ASP 72 35.002 68.216 21.790 1.00 0.00 C ATOM 90 CB ASP 72 34.828 68.868 20.407 1.00 0.00 C ATOM 91 C ASP 72 33.750 68.450 22.558 1.00 0.00 C ATOM 92 O ASP 72 33.417 67.700 23.473 1.00 0.00 O ATOM 93 N CYS 73 33.025 69.528 22.221 1.00 0.00 N ATOM 94 CA CYS 73 31.828 69.769 22.957 1.00 0.00 C ATOM 95 CB CYS 73 31.730 71.177 23.595 1.00 0.00 C ATOM 96 C CYS 73 30.640 69.439 22.105 1.00 0.00 C ATOM 97 O CYS 73 30.780 69.076 20.937 1.00 0.00 O ATOM 98 N ARG 74 29.428 69.530 22.696 1.00 0.00 N ATOM 99 CA ARG 74 28.245 69.047 22.041 1.00 0.00 C ATOM 100 CB ARG 74 27.592 67.913 22.838 1.00 0.00 C ATOM 101 C ARG 74 27.226 70.143 22.027 1.00 0.00 C ATOM 102 O ARG 74 27.328 71.106 22.787 1.00 0.00 O ATOM 103 N CYS 75 26.215 70.028 21.133 1.00 0.00 N ATOM 104 CA CYS 75 25.193 71.033 21.078 1.00 0.00 C ATOM 105 CB CYS 75 25.521 72.072 19.987 1.00 0.00 C ATOM 106 C CYS 75 23.904 70.341 20.706 1.00 0.00 C ATOM 107 O CYS 75 23.809 69.724 19.645 1.00 0.00 O ATOM 108 N ASP 76 22.882 70.401 21.590 1.00 0.00 N ATOM 109 CA ASP 76 21.603 69.804 21.300 1.00 0.00 C ATOM 110 CB ASP 76 21.576 68.282 21.522 1.00 0.00 C ATOM 111 C ASP 76 20.617 70.408 22.262 1.00 0.00 C ATOM 112 O ASP 76 20.993 71.179 23.141 1.00 0.00 O ATOM 113 N ASN 77 19.314 70.104 22.095 1.00 0.00 N ATOM 114 CA ASN 77 18.305 70.547 23.021 1.00 0.00 C ATOM 115 CB ASN 77 16.879 70.177 22.577 1.00 0.00 C ATOM 116 C ASN 77 18.590 69.824 24.297 1.00 0.00 C ATOM 117 O ASN 77 18.322 70.287 25.403 1.00 0.00 O ATOM 118 N LEU 78 19.162 68.632 24.104 1.00 0.00 N ATOM 119 CA LEU 78 19.581 67.620 25.019 1.00 0.00 C ATOM 120 CB LEU 78 19.951 66.373 24.191 1.00 0.00 C ATOM 121 C LEU 78 20.737 68.156 25.821 1.00 0.00 C ATOM 122 O LEU 78 21.105 67.599 26.852 1.00 0.00 O ATOM 123 N CYS 79 21.360 69.262 25.369 1.00 0.00 N ATOM 124 CA CYS 79 22.562 69.727 26.004 1.00 0.00 C ATOM 125 CB CYS 79 23.198 70.983 25.371 1.00 0.00 C ATOM 126 C CYS 79 22.292 70.001 27.452 1.00 0.00 C ATOM 127 O CYS 79 23.193 69.878 28.276 1.00 0.00 O ATOM 128 N LYS 80 21.061 70.414 27.809 1.00 0.00 N ATOM 129 CA LYS 80 20.743 70.642 29.192 1.00 0.00 C ATOM 130 CB LYS 80 19.319 71.191 29.391 1.00 0.00 C ATOM 131 C LYS 80 20.835 69.347 29.946 1.00 0.00 C ATOM 132 O LYS 80 21.285 69.324 31.092 1.00 0.00 O ATOM 133 N SER 81 20.400 68.229 29.329 1.00 0.00 N ATOM 134 CA SER 81 20.393 66.975 30.033 1.00 0.00 C ATOM 135 CB SER 81 19.794 65.810 29.228 1.00 0.00 C ATOM 136 C SER 81 21.786 66.592 30.445 1.00 0.00 C ATOM 137 O SER 81 22.042 66.372 31.628 1.00 0.00 O ATOM 138 N TYR 82 22.724 66.495 29.479 1.00 0.00 N ATOM 139 CA TYR 82 24.096 66.171 29.764 1.00 0.00 C ATOM 140 CB TYR 82 24.980 65.854 28.542 1.00 0.00 C ATOM 141 C TYR 82 24.729 67.303 30.496 1.00 0.00 C ATOM 142 O TYR 82 25.647 67.107 31.291 1.00 0.00 O ATOM 143 N SER 83 24.245 68.528 30.242 1.00 0.00 N ATOM 144 CA SER 83 24.845 69.707 30.784 1.00 0.00 C ATOM 145 CB SER 83 25.045 69.646 32.309 1.00 0.00 C ATOM 146 C SER 83 26.180 69.836 30.139 1.00 0.00 C ATOM 147 O SER 83 27.151 70.274 30.756 1.00 0.00 O ATOM 148 N SER 84 26.251 69.430 28.855 1.00 0.00 N ATOM 149 CA SER 84 27.478 69.533 28.137 1.00 0.00 C ATOM 150 CB SER 84 28.043 68.135 27.867 1.00 0.00 C ATOM 151 C SER 84 27.200 70.202 26.822 1.00 0.00 C ATOM 152 O SER 84 26.931 69.540 25.822 1.00 0.00 O ATOM 153 N CYS 85 27.276 71.548 26.788 1.00 0.00 N ATOM 154 CA CYS 85 27.097 72.277 25.565 1.00 0.00 C ATOM 155 CB CYS 85 25.652 72.745 25.274 1.00 0.00 C ATOM 156 C CYS 85 28.071 73.412 25.525 1.00 0.00 C ATOM 157 O CYS 85 28.506 73.921 26.557 1.00 0.00 O ATOM 158 N CYS 86 28.453 73.816 24.296 1.00 0.00 N ATOM 159 CA CYS 86 29.461 74.817 24.071 1.00 0.00 C ATOM 160 CB CYS 86 29.967 74.825 22.614 1.00 0.00 C ATOM 161 C CYS 86 28.872 76.174 24.345 1.00 0.00 C ATOM 162 O CYS 86 27.664 76.331 24.505 1.00 0.00 O ATOM 163 N HIS 87 29.741 77.199 24.439 1.00 0.00 N ATOM 164 CA HIS 87 29.323 78.555 24.686 1.00 0.00 C ATOM 165 CB HIS 87 30.508 79.512 24.901 1.00 0.00 C ATOM 166 C HIS 87 28.554 79.050 23.498 1.00 0.00 C ATOM 167 O HIS 87 27.608 79.824 23.632 1.00 0.00 O ATOM 168 N ASP 88 28.971 78.602 22.301 1.00 0.00 N ATOM 169 CA ASP 88 28.486 78.959 20.995 1.00 0.00 C ATOM 170 CB ASP 88 29.289 78.266 19.889 1.00 0.00 C ATOM 171 C ASP 88 27.100 78.432 20.823 1.00 0.00 C ATOM 172 O ASP 88 26.419 78.773 19.859 1.00 0.00 O ATOM 173 N PHE 89 26.679 77.516 21.707 1.00 0.00 N ATOM 174 CA PHE 89 25.425 76.845 21.550 1.00 0.00 C ATOM 175 CB PHE 89 25.165 75.875 22.719 1.00 0.00 C ATOM 176 C PHE 89 24.301 77.828 21.459 1.00 0.00 C ATOM 177 O PHE 89 23.480 77.750 20.545 1.00 0.00 O ATOM 178 N ASP 90 24.228 78.794 22.385 1.00 0.00 N ATOM 179 CA ASP 90 23.140 79.724 22.328 1.00 0.00 C ATOM 180 CB ASP 90 23.108 80.703 23.517 1.00 0.00 C ATOM 181 C ASP 90 23.245 80.530 21.079 1.00 0.00 C ATOM 182 O ASP 90 22.237 80.813 20.432 1.00 0.00 O ATOM 183 N GLU 91 24.472 80.936 20.705 1.00 0.00 N ATOM 184 CA GLU 91 24.610 81.786 19.562 1.00 0.00 C ATOM 185 CB GLU 91 26.064 82.234 19.337 1.00 0.00 C ATOM 186 C GLU 91 24.163 81.094 18.310 1.00 0.00 C ATOM 187 O GLU 91 23.258 81.573 17.630 1.00 0.00 O ATOM 188 N LEU 92 24.780 79.946 17.962 1.00 0.00 N ATOM 189 CA LEU 92 24.408 79.338 16.716 1.00 0.00 C ATOM 190 CB LEU 92 25.454 78.368 16.143 1.00 0.00 C ATOM 191 C LEU 92 23.070 78.662 16.748 1.00 0.00 C ATOM 192 O LEU 92 22.262 78.870 15.846 1.00 0.00 O ATOM 193 N CYS 93 22.806 77.812 17.763 1.00 0.00 N ATOM 194 CA CYS 93 21.567 77.080 17.776 1.00 0.00 C ATOM 195 CB CYS 93 21.589 75.852 18.703 1.00 0.00 C ATOM 196 C CYS 93 20.370 77.931 18.119 1.00 0.00 C ATOM 197 O CYS 93 19.367 77.894 17.409 1.00 0.00 O ATOM 198 N LEU 94 20.460 78.766 19.178 1.00 0.00 N ATOM 199 CA LEU 94 19.341 79.570 19.613 1.00 0.00 C ATOM 200 CB LEU 94 18.927 80.652 18.596 1.00 0.00 C ATOM 201 C LEU 94 18.123 78.719 19.856 1.00 0.00 C ATOM 202 O LEU 94 17.092 78.913 19.214 1.00 0.00 O ATOM 203 N LYS 95 18.199 77.746 20.790 1.00 0.00 N ATOM 204 CA LYS 95 17.087 76.863 21.002 1.00 0.00 C ATOM 205 CB LYS 95 17.399 75.756 22.027 1.00 0.00 C ATOM 206 C LYS 95 15.862 77.586 21.469 1.00 0.00 C ATOM 207 O LYS 95 14.832 77.531 20.806 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 197 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 58.65 62.8 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 62.19 64.3 56 100.0 56 ARMSMC BURIED . . . . . . . . 48.52 59.1 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 25 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 18 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.30 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.30 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.0576 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 2.51 29 100.0 29 CRMSCA BURIED . . . . . . . . 1.62 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.43 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 2.65 142 100.0 142 CRMSMC BURIED . . . . . . . . 1.75 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 3.36 37 25.9 143 CRMSSC RELIABLE SIDE CHAINS . 3.36 37 29.6 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 3.71 26 25.2 103 CRMSSC BURIED . . . . . . . . 2.35 11 27.5 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.43 197 65.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 2.65 142 64.8 219 CRMSALL BURIED . . . . . . . . 1.75 55 65.5 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.922 1.000 0.500 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 2.128 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 1.377 1.000 0.500 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.008 1.000 0.500 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 2.224 1.000 0.500 142 100.0 142 ERRMC BURIED . . . . . . . . 1.452 1.000 0.500 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.629 1.000 0.500 37 25.9 143 ERRSC RELIABLE SIDE CHAINS . 2.629 1.000 0.500 37 29.6 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 2.982 1.000 0.500 26 25.2 103 ERRSC BURIED . . . . . . . . 1.795 1.000 0.500 11 27.5 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.008 1.000 0.500 197 65.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 2.224 1.000 0.500 142 64.8 219 ERRALL BURIED . . . . . . . . 1.452 1.000 0.500 55 65.5 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 7 30 34 38 40 40 40 DISTCA CA (P) 17.50 75.00 85.00 95.00 100.00 40 DISTCA CA (RMS) 0.61 1.45 1.58 1.96 2.30 DISTCA ALL (N) 35 133 165 189 197 197 303 DISTALL ALL (P) 11.55 43.89 54.46 62.38 65.02 303 DISTALL ALL (RMS) 0.69 1.40 1.63 2.07 2.43 DISTALL END of the results output