####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS461_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS461_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 56 - 95 2.50 2.50 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 70 - 94 1.99 2.68 LCS_AVERAGE: 48.50 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 56 - 63 0.86 3.98 LONGEST_CONTINUOUS_SEGMENT: 8 87 - 94 0.90 3.79 LCS_AVERAGE: 16.06 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 8 9 40 4 7 18 25 30 32 35 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 57 S 57 8 11 40 4 12 18 27 30 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 58 C 58 8 11 40 6 12 18 27 30 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 59 K 59 8 11 40 6 12 18 27 30 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT G 60 G 60 8 11 40 5 12 18 27 30 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT R 61 R 61 8 11 40 3 8 18 27 30 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 62 C 62 8 11 40 3 7 17 27 30 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT F 63 F 63 8 11 40 3 7 13 27 30 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 64 E 64 4 11 40 3 6 15 27 30 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 65 L 65 4 11 40 3 4 7 11 17 31 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT Q 66 Q 66 4 11 40 3 4 7 11 17 31 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 67 E 67 4 11 40 3 4 5 9 22 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT V 68 V 68 4 6 40 3 4 5 8 10 17 34 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT G 69 G 69 4 6 40 3 4 5 5 6 17 34 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT P 70 P 70 4 25 40 2 4 9 17 28 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT P 71 P 71 5 25 40 1 7 17 27 30 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 72 D 72 5 25 40 3 5 12 20 29 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 73 C 73 5 25 40 3 10 18 27 30 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT R 74 R 74 5 25 40 6 12 18 27 30 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 75 C 75 5 25 40 6 12 18 27 30 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 76 D 76 7 25 40 5 6 18 25 29 32 34 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT N 77 N 77 7 25 40 6 12 18 27 30 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 78 L 78 7 25 40 5 9 18 27 30 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 79 C 79 7 25 40 5 12 18 27 30 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 80 K 80 7 25 40 5 6 11 16 23 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 81 S 81 7 25 40 5 7 12 19 30 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT Y 82 Y 82 7 25 40 5 8 18 27 30 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 83 S 83 6 25 40 3 7 15 25 30 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 84 S 84 6 25 40 5 12 18 27 30 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 85 C 85 6 25 40 3 12 18 27 30 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 86 C 86 6 25 40 3 7 16 27 30 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT H 87 H 87 8 25 40 5 12 18 27 30 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 88 D 88 8 25 40 5 9 18 27 30 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT F 89 F 89 8 25 40 5 12 18 27 30 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 90 D 90 8 25 40 5 12 18 27 30 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 91 E 91 8 25 40 5 10 18 27 30 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 92 L 92 8 25 40 5 6 12 27 30 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 93 C 93 8 25 40 5 12 18 27 30 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 94 L 94 8 25 40 6 12 18 27 30 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 95 K 95 3 9 40 3 4 5 15 22 28 36 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_AVERAGE LCS_A: 54.85 ( 16.06 48.50 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 12 18 27 30 33 36 38 40 40 40 40 40 40 40 40 40 40 40 40 GDT PERCENT_AT 15.00 30.00 45.00 67.50 75.00 82.50 90.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.39 0.71 0.91 1.36 1.57 1.98 2.26 2.35 2.50 2.50 2.50 2.50 2.50 2.50 2.50 2.50 2.50 2.50 2.50 2.50 GDT RMS_ALL_AT 2.89 3.07 3.18 2.82 2.85 2.55 2.51 2.51 2.50 2.50 2.50 2.50 2.50 2.50 2.50 2.50 2.50 2.50 2.50 2.50 # Checking swapping # possible swapping detected: E 64 E 64 # possible swapping detected: E 67 E 67 # possible swapping detected: D 76 D 76 # possible swapping detected: Y 82 Y 82 # possible swapping detected: D 88 D 88 # possible swapping detected: F 89 F 89 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 3.381 0 0.187 0.187 3.381 53.571 53.571 LGA S 57 S 57 1.966 0 0.126 0.687 3.428 71.071 66.508 LGA C 58 C 58 0.713 0 0.094 0.147 1.447 88.214 87.460 LGA K 59 K 59 0.403 0 0.554 0.797 6.224 78.810 61.270 LGA G 60 G 60 0.320 0 0.237 0.237 2.533 82.262 82.262 LGA R 61 R 61 2.003 0 0.322 1.678 8.867 60.119 39.394 LGA C 62 C 62 2.156 0 0.566 0.568 3.590 68.810 62.619 LGA F 63 F 63 1.819 0 0.493 1.426 9.285 69.048 39.091 LGA E 64 E 64 1.281 0 0.172 1.372 7.156 81.429 56.984 LGA L 65 L 65 4.142 0 0.706 0.840 7.585 46.905 32.976 LGA Q 66 Q 66 4.091 0 0.045 1.195 4.809 34.286 45.767 LGA E 67 E 67 3.964 0 0.071 1.271 8.489 46.786 29.841 LGA V 68 V 68 4.726 0 0.296 0.461 6.316 30.357 25.918 LGA G 69 G 69 4.530 0 0.042 0.042 4.674 42.500 42.500 LGA P 70 P 70 2.882 0 0.060 0.323 6.882 59.762 42.993 LGA P 71 P 71 1.818 0 0.509 0.558 5.262 81.548 61.837 LGA D 72 D 72 2.352 3 0.380 0.433 3.538 64.881 37.857 LGA C 73 C 73 1.544 0 0.430 1.180 3.945 67.143 62.778 LGA R 74 R 74 0.970 0 0.188 1.285 4.789 83.810 68.355 LGA C 75 C 75 0.921 0 0.097 0.328 1.542 81.548 83.016 LGA D 76 D 76 3.521 0 0.250 1.028 9.425 61.429 35.714 LGA N 77 N 77 1.918 0 0.077 1.259 2.973 77.381 71.250 LGA L 78 L 78 0.759 0 0.149 0.613 4.872 90.476 68.452 LGA C 79 C 79 1.721 0 0.077 0.600 3.495 70.952 65.159 LGA K 80 K 80 3.280 0 0.072 0.927 11.124 51.786 29.735 LGA S 81 S 81 3.031 0 0.030 0.051 3.374 53.571 53.571 LGA Y 82 Y 82 1.820 0 0.536 0.402 2.984 68.929 66.905 LGA S 83 S 83 2.851 0 0.260 0.683 4.788 53.690 48.254 LGA S 84 S 84 1.519 0 0.088 0.601 2.079 77.143 74.365 LGA C 85 C 85 0.819 0 0.130 0.337 1.985 88.214 84.524 LGA C 86 C 86 1.267 0 0.227 0.680 3.697 81.548 72.381 LGA H 87 H 87 1.897 0 0.077 1.159 3.699 67.262 61.333 LGA D 88 D 88 2.576 0 0.226 0.946 3.886 62.857 58.333 LGA F 89 F 89 1.611 0 0.167 0.951 4.597 75.000 61.732 LGA D 90 D 90 2.245 0 0.211 1.356 4.451 62.857 58.571 LGA E 91 E 91 2.165 0 0.347 1.221 3.812 59.167 59.048 LGA L 92 L 92 2.214 0 0.061 0.736 5.085 64.762 56.190 LGA C 93 C 93 2.224 0 0.642 0.629 5.079 65.119 56.111 LGA L 94 L 94 1.550 0 0.412 1.037 5.791 71.071 53.929 LGA K 95 K 95 4.257 0 0.676 1.334 13.675 38.571 21.005 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 2.498 2.508 3.757 65.866 55.989 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 38 2.35 73.125 71.664 1.554 LGA_LOCAL RMSD: 2.346 Number of atoms: 38 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.510 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 2.498 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.347727 * X + -0.902407 * Y + -0.254455 * Z + 9.004231 Y_new = -0.875198 * X + -0.215053 * Y + -0.433336 * Z + 68.450951 Z_new = 0.336325 * X + 0.373381 * Y + -0.864565 * Z + 24.088570 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.192610 -0.343012 2.733916 [DEG: -68.3315 -19.6531 156.6419 ] ZXZ: -0.530954 2.615080 0.733232 [DEG: -30.4214 149.8330 42.0111 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS461_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS461_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 38 2.35 71.664 2.50 REMARK ---------------------------------------------------------- MOLECULE T0543TS461_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT N/A ATOM 422 N GLY 56 33.321 69.704 17.463 1.00 0.00 N ATOM 423 CA GLY 56 32.509 70.183 18.549 1.00 0.00 C ATOM 424 C GLY 56 32.100 71.585 18.269 1.00 0.00 C ATOM 425 O GLY 56 32.327 72.491 19.067 1.00 0.00 O ATOM 426 N SER 57 31.513 71.816 17.090 1.00 0.00 N ATOM 427 CA SER 57 31.089 73.151 16.835 1.00 0.00 C ATOM 428 C SER 57 29.651 73.102 16.501 1.00 0.00 C ATOM 429 O SER 57 29.136 72.074 16.077 1.00 0.00 O ATOM 430 CB SER 57 31.804 73.810 15.642 1.00 0.00 C ATOM 431 OG SER 57 33.189 73.956 15.914 1.00 0.00 O ATOM 432 N CYS 58 28.955 74.187 16.860 1.00 0.00 N ATOM 433 CA CYS 58 27.620 74.483 16.489 1.00 0.00 C ATOM 434 C CYS 58 27.611 75.233 15.188 1.00 0.00 C ATOM 435 O CYS 58 26.634 75.884 14.857 1.00 0.00 O ATOM 436 CB CYS 58 26.737 75.118 17.572 1.00 0.00 C ATOM 437 SG CYS 58 25.964 73.842 18.642 1.00 0.00 S ATOM 438 N LYS 59 28.720 75.332 14.454 1.00 0.00 N ATOM 439 CA LYS 59 28.577 76.121 13.268 1.00 0.00 C ATOM 440 C LYS 59 27.552 75.577 12.303 1.00 0.00 C ATOM 441 O LYS 59 26.602 76.284 12.029 1.00 0.00 O ATOM 442 CB LYS 59 29.899 76.273 12.497 1.00 0.00 C ATOM 443 CG LYS 59 30.467 74.952 11.976 1.00 0.00 C ATOM 444 CD LYS 59 31.604 75.132 10.968 1.00 0.00 C ATOM 445 CE LYS 59 32.174 73.812 10.444 1.00 0.00 C ATOM 446 NZ LYS 59 33.263 74.079 9.479 1.00 0.00 N ATOM 447 N GLY 60 27.700 74.354 11.749 1.00 0.00 N ATOM 448 CA GLY 60 26.829 73.754 10.752 1.00 0.00 C ATOM 449 C GLY 60 25.484 73.137 11.126 1.00 0.00 C ATOM 450 O GLY 60 24.502 73.287 10.401 1.00 0.00 O ATOM 451 N ARG 61 25.397 72.349 12.209 1.00 0.00 N ATOM 452 CA ARG 61 24.224 71.517 12.430 1.00 0.00 C ATOM 453 C ARG 61 22.867 72.093 12.719 1.00 0.00 C ATOM 454 O ARG 61 21.925 71.876 11.973 1.00 0.00 O ATOM 455 CB ARG 61 24.373 70.370 13.423 1.00 0.00 C ATOM 456 CG ARG 61 25.010 69.086 12.902 1.00 0.00 C ATOM 457 CD ARG 61 26.522 69.143 12.755 1.00 0.00 C ATOM 458 NE ARG 61 26.807 70.050 11.614 1.00 0.00 N ATOM 459 CZ ARG 61 26.776 69.543 10.348 1.00 0.00 C ATOM 460 NH1 ARG 61 26.499 68.221 10.153 1.00 0.00 H ATOM 461 NH2 ARG 61 27.015 70.357 9.280 1.00 0.00 H ATOM 462 N CYS 62 22.683 72.861 13.784 1.00 0.00 N ATOM 463 CA CYS 62 21.395 73.361 14.138 1.00 0.00 C ATOM 464 C CYS 62 20.507 72.198 14.470 1.00 0.00 C ATOM 465 O CYS 62 19.325 72.402 14.720 1.00 0.00 O ATOM 466 CB CYS 62 20.669 74.569 13.271 1.00 0.00 C ATOM 467 SG CYS 62 21.144 76.457 13.030 1.00 0.00 S ATOM 468 N PHE 63 21.103 70.999 14.688 1.00 0.00 N ATOM 469 CA PHE 63 20.316 69.856 15.095 1.00 0.00 C ATOM 470 C PHE 63 21.036 68.578 14.794 1.00 0.00 C ATOM 471 O PHE 63 21.433 68.317 13.664 1.00 0.00 O ATOM 472 CB PHE 63 18.970 69.723 14.347 1.00 0.00 C ATOM 473 CG PHE 63 18.413 68.348 14.542 1.00 0.00 C ATOM 474 CD1 PHE 63 17.672 68.017 15.653 1.00 0.00 C ATOM 475 CD2 PHE 63 18.627 67.380 13.586 1.00 0.00 C ATOM 476 CE1 PHE 63 17.165 66.747 15.814 1.00 0.00 C ATOM 477 CE2 PHE 63 18.125 66.109 13.739 1.00 0.00 C ATOM 478 CZ PHE 63 17.393 65.790 14.856 1.00 0.00 C ATOM 479 N GLU 64 21.248 67.761 15.842 1.00 0.00 N ATOM 480 CA GLU 64 21.894 66.490 15.773 1.00 0.00 C ATOM 481 C GLU 64 22.285 66.056 17.140 1.00 0.00 C ATOM 482 O GLU 64 21.844 66.639 18.110 1.00 0.00 O ATOM 483 CB GLU 64 23.028 66.359 14.735 1.00 0.00 C ATOM 484 CG GLU 64 23.538 64.929 14.550 1.00 0.00 C ATOM 485 CD GLU 64 22.501 64.159 13.744 1.00 0.00 C ATOM 486 OE1 GLU 64 21.440 64.757 13.421 1.00 0.00 O ATOM 487 OE2 GLU 64 22.755 62.963 13.442 1.00 0.00 O ATOM 488 N LEU 65 23.079 64.999 17.338 1.00 0.00 N ATOM 489 CA LEU 65 23.427 64.713 18.707 1.00 0.00 C ATOM 490 C LEU 65 24.777 64.122 18.565 1.00 0.00 C ATOM 491 O LEU 65 24.959 63.263 17.710 1.00 0.00 O ATOM 492 CB LEU 65 22.623 63.541 19.310 1.00 0.00 C ATOM 493 CG LEU 65 21.089 63.528 19.104 1.00 0.00 C ATOM 494 CD1 LEU 65 20.473 62.289 19.773 1.00 0.00 C ATOM 495 CD2 LEU 65 20.390 64.818 19.551 1.00 0.00 C ATOM 496 N GLN 66 25.789 64.505 19.351 1.00 0.00 N ATOM 497 CA GLN 66 26.936 63.764 18.949 1.00 0.00 C ATOM 498 C GLN 66 27.790 63.413 20.115 1.00 0.00 C ATOM 499 O GLN 66 28.066 64.245 20.975 1.00 0.00 O ATOM 500 CB GLN 66 27.730 64.421 17.810 1.00 0.00 C ATOM 501 CG GLN 66 26.998 64.596 16.477 1.00 0.00 C ATOM 502 CD GLN 66 27.958 65.259 15.501 1.00 0.00 C ATOM 503 OE1 GLN 66 29.124 65.490 15.817 1.00 0.00 O ATOM 504 NE2 GLN 66 27.457 65.573 14.276 1.00 0.00 N ATOM 505 N GLU 67 28.212 62.131 20.177 1.00 0.00 N ATOM 506 CA GLU 67 29.002 61.658 21.277 1.00 0.00 C ATOM 507 C GLU 67 30.084 60.766 20.762 1.00 0.00 C ATOM 508 O GLU 67 29.815 59.790 20.063 1.00 0.00 O ATOM 509 CB GLU 67 28.178 60.807 22.263 1.00 0.00 C ATOM 510 CG GLU 67 28.997 60.128 23.363 1.00 0.00 C ATOM 511 CD GLU 67 28.034 59.339 24.239 1.00 0.00 C ATOM 512 OE1 GLU 67 26.820 59.306 23.903 1.00 0.00 O ATOM 513 OE2 GLU 67 28.499 58.758 25.256 1.00 0.00 O ATOM 514 N VAL 68 31.354 61.093 21.081 1.00 0.00 N ATOM 515 CA VAL 68 32.419 60.202 20.724 1.00 0.00 C ATOM 516 C VAL 68 33.408 60.232 21.848 1.00 0.00 C ATOM 517 O VAL 68 34.227 61.143 21.940 1.00 0.00 O ATOM 518 CB VAL 68 33.156 60.619 19.486 1.00 0.00 C ATOM 519 CG1 VAL 68 34.346 59.666 19.280 1.00 0.00 C ATOM 520 CG2 VAL 68 32.164 60.641 18.311 1.00 0.00 C ATOM 521 N GLY 69 33.391 59.218 22.727 1.00 0.00 N ATOM 522 CA GLY 69 34.335 59.253 23.804 1.00 0.00 C ATOM 523 C GLY 69 34.048 60.486 24.601 1.00 0.00 C ATOM 524 O GLY 69 32.907 60.940 24.692 1.00 0.00 O ATOM 525 N PRO 70 35.083 61.043 25.167 1.00 0.00 N ATOM 526 CA PRO 70 34.960 62.219 25.986 1.00 0.00 C ATOM 527 C PRO 70 34.264 63.276 25.191 1.00 0.00 C ATOM 528 O PRO 70 34.484 63.360 23.986 1.00 0.00 O ATOM 529 CB PRO 70 36.391 62.631 26.316 1.00 0.00 C ATOM 530 CG PRO 70 37.181 62.150 25.083 1.00 0.00 C ATOM 531 CD PRO 70 36.421 60.894 24.622 1.00 0.00 C ATOM 532 N PRO 71 33.377 64.000 25.806 1.00 0.00 N ATOM 533 CA PRO 71 32.721 65.049 25.077 1.00 0.00 C ATOM 534 C PRO 71 33.373 66.401 25.084 1.00 0.00 C ATOM 535 O PRO 71 33.763 66.856 26.157 1.00 0.00 O ATOM 536 CB PRO 71 31.305 65.142 25.653 1.00 0.00 C ATOM 537 CG PRO 71 31.054 63.765 26.279 1.00 0.00 C ATOM 538 CD PRO 71 32.455 63.298 26.685 1.00 0.00 C ATOM 539 N ASP 72 33.468 67.077 23.918 1.00 0.00 N ATOM 540 CA ASP 72 33.691 68.493 23.969 1.00 0.00 C ATOM 541 C ASP 72 32.332 68.909 24.435 1.00 0.00 C ATOM 542 O ASP 72 32.069 68.826 25.632 1.00 0.00 O ATOM 543 CB ASP 72 33.913 69.157 22.610 1.00 0.00 C ATOM 544 CG ASP 72 34.349 70.594 22.852 1.00 0.00 C ATOM 545 OD1 ASP 72 34.552 70.957 24.043 1.00 0.00 O ATOM 546 OD2 ASP 72 34.493 71.345 21.852 1.00 0.00 O ATOM 547 N CYS 73 31.394 69.310 23.519 1.00 0.00 N ATOM 548 CA CYS 73 30.021 69.352 23.999 1.00 0.00 C ATOM 549 C CYS 73 28.851 68.604 23.267 1.00 0.00 C ATOM 550 O CYS 73 28.616 67.425 23.424 1.00 0.00 O ATOM 551 CB CYS 73 29.691 70.744 24.330 1.00 0.00 C ATOM 552 SG CYS 73 30.959 71.401 25.423 1.00 0.00 S ATOM 553 N ARG 74 27.942 69.271 22.553 1.00 0.00 N ATOM 554 CA ARG 74 26.798 68.823 21.848 1.00 0.00 C ATOM 555 C ARG 74 26.196 69.864 20.909 1.00 0.00 C ATOM 556 O ARG 74 26.889 70.673 20.394 1.00 0.00 O ATOM 557 CB ARG 74 25.820 68.119 22.715 1.00 0.00 C ATOM 558 CG ARG 74 26.022 66.746 23.375 1.00 0.00 C ATOM 559 CD ARG 74 26.158 65.550 22.437 1.00 0.00 C ATOM 560 NE ARG 74 26.112 64.328 23.291 1.00 0.00 N ATOM 561 CZ ARG 74 25.554 63.171 22.830 1.00 0.00 C ATOM 562 NH1 ARG 74 24.996 63.125 21.585 1.00 0.00 H ATOM 563 NH2 ARG 74 25.553 62.056 23.617 1.00 0.00 H ATOM 564 N CYS 75 25.035 69.797 20.291 1.00 0.00 N ATOM 565 CA CYS 75 24.503 70.882 19.539 1.00 0.00 C ATOM 566 C CYS 75 23.108 71.284 19.803 1.00 0.00 C ATOM 567 O CYS 75 22.558 71.776 18.846 1.00 0.00 O ATOM 568 CB CYS 75 24.991 71.099 18.107 1.00 0.00 C ATOM 569 SG CYS 75 26.534 72.029 17.955 1.00 0.00 S ATOM 570 N ASP 76 22.399 70.882 20.886 1.00 0.00 N ATOM 571 CA ASP 76 21.053 71.342 21.265 1.00 0.00 C ATOM 572 C ASP 76 20.444 70.715 22.414 1.00 0.00 C ATOM 573 O ASP 76 20.970 70.753 23.506 1.00 0.00 O ATOM 574 CB ASP 76 19.813 71.550 20.344 1.00 0.00 C ATOM 575 CG ASP 76 18.620 72.446 20.763 1.00 0.00 C ATOM 576 OD1 ASP 76 17.802 72.171 21.679 1.00 0.00 O ATOM 577 OD2 ASP 76 18.521 73.483 20.087 1.00 0.00 O ATOM 578 N ASN 77 19.289 70.122 22.126 1.00 0.00 N ATOM 579 CA ASN 77 18.251 69.841 23.046 1.00 0.00 C ATOM 580 C ASN 77 18.678 68.920 24.100 1.00 0.00 C ATOM 581 O ASN 77 18.275 69.069 25.251 1.00 0.00 O ATOM 582 CB ASN 77 17.004 69.208 22.406 1.00 0.00 C ATOM 583 CG ASN 77 17.349 67.818 21.895 1.00 0.00 C ATOM 584 OD1 ASN 77 16.891 66.818 22.447 1.00 0.00 O ATOM 585 ND2 ASN 77 18.165 67.745 20.811 1.00 0.00 N ATOM 586 N LEU 78 19.511 67.944 23.744 1.00 0.00 N ATOM 587 CA LEU 78 19.908 67.037 24.762 1.00 0.00 C ATOM 588 C LEU 78 20.644 67.789 25.804 1.00 0.00 C ATOM 589 O LEU 78 20.745 67.291 26.919 1.00 0.00 O ATOM 590 CB LEU 78 20.747 65.829 24.306 1.00 0.00 C ATOM 591 CG LEU 78 19.902 64.660 23.753 1.00 0.00 C ATOM 592 CD1 LEU 78 19.007 65.073 22.575 1.00 0.00 C ATOM 593 CD2 LEU 78 20.790 63.450 23.425 1.00 0.00 C ATOM 594 N CYS 79 21.136 69.007 25.477 1.00 0.00 N ATOM 595 CA CYS 79 21.967 69.782 26.345 1.00 0.00 C ATOM 596 C CYS 79 21.233 69.881 27.597 1.00 0.00 C ATOM 597 O CYS 79 21.807 69.920 28.666 1.00 0.00 O ATOM 598 CB CYS 79 22.206 71.206 25.844 1.00 0.00 C ATOM 599 SG CYS 79 22.504 72.435 27.081 1.00 0.00 S ATOM 600 N LYS 80 19.920 69.916 27.533 1.00 0.00 N ATOM 601 CA LYS 80 19.276 69.967 28.802 1.00 0.00 C ATOM 602 C LYS 80 19.555 68.744 29.651 1.00 0.00 C ATOM 603 O LYS 80 20.036 68.847 30.779 1.00 0.00 O ATOM 604 CB LYS 80 17.746 69.931 28.671 1.00 0.00 C ATOM 605 CG LYS 80 17.020 69.986 30.016 1.00 0.00 C ATOM 606 CD LYS 80 15.520 70.264 29.893 1.00 0.00 C ATOM 607 CE LYS 80 14.792 70.320 31.237 1.00 0.00 C ATOM 608 NZ LYS 80 13.354 70.596 31.021 1.00 0.00 N ATOM 609 N SER 81 19.334 67.542 29.094 1.00 0.00 N ATOM 610 CA SER 81 19.322 66.316 29.847 1.00 0.00 C ATOM 611 C SER 81 20.597 66.086 30.581 1.00 0.00 C ATOM 612 O SER 81 20.595 65.587 31.704 1.00 0.00 O ATOM 613 CB SER 81 19.086 65.083 28.958 1.00 0.00 C ATOM 614 OG SER 81 17.805 65.158 28.351 1.00 0.00 O ATOM 615 N TYR 82 21.731 66.465 29.992 1.00 0.00 N ATOM 616 CA TYR 82 22.972 66.159 30.626 1.00 0.00 C ATOM 617 C TYR 82 23.794 67.374 30.834 1.00 0.00 C ATOM 618 O TYR 82 23.404 68.292 31.553 1.00 0.00 O ATOM 619 CB TYR 82 23.829 65.097 29.907 1.00 0.00 C ATOM 620 CG TYR 82 23.312 63.754 30.314 1.00 0.00 C ATOM 621 CD1 TYR 82 23.648 63.247 31.550 1.00 0.00 C ATOM 622 CD2 TYR 82 22.518 62.991 29.489 1.00 0.00 C ATOM 623 CE1 TYR 82 23.195 62.015 31.957 1.00 0.00 C ATOM 624 CE2 TYR 82 22.060 61.758 29.887 1.00 0.00 C ATOM 625 CZ TYR 82 22.398 61.267 31.126 1.00 0.00 C ATOM 626 OH TYR 82 21.930 60.002 31.539 1.00 0.00 H ATOM 627 N SER 83 25.014 67.319 30.279 1.00 0.00 N ATOM 628 CA SER 83 26.018 68.338 30.329 1.00 0.00 C ATOM 629 C SER 83 26.864 68.067 29.142 1.00 0.00 C ATOM 630 O SER 83 27.497 67.020 29.065 1.00 0.00 O ATOM 631 CB SER 83 26.937 68.220 31.557 1.00 0.00 C ATOM 632 OG SER 83 28.023 69.130 31.458 1.00 0.00 O ATOM 633 N SER 84 26.919 69.034 28.214 1.00 0.00 N ATOM 634 CA SER 84 27.451 68.803 26.926 1.00 0.00 C ATOM 635 C SER 84 27.079 69.968 26.110 1.00 0.00 C ATOM 636 O SER 84 27.179 69.893 24.908 1.00 0.00 O ATOM 637 CB SER 84 26.801 67.638 26.148 1.00 0.00 C ATOM 638 OG SER 84 27.249 66.370 26.597 1.00 0.00 O ATOM 639 N CYS 85 26.546 71.070 26.621 1.00 0.00 N ATOM 640 CA CYS 85 26.395 72.057 25.598 1.00 0.00 C ATOM 641 C CYS 85 27.808 72.554 25.502 1.00 0.00 C ATOM 642 O CYS 85 28.524 72.290 26.449 1.00 0.00 O ATOM 643 CB CYS 85 25.448 73.168 25.997 1.00 0.00 C ATOM 644 SG CYS 85 24.462 72.833 27.452 1.00 0.00 S ATOM 645 N CYS 86 28.314 73.189 24.392 1.00 0.00 N ATOM 646 CA CYS 86 29.684 73.684 24.304 1.00 0.00 C ATOM 647 C CYS 86 30.104 75.120 24.335 1.00 0.00 C ATOM 648 O CYS 86 29.457 76.029 24.817 1.00 0.00 O ATOM 649 CB CYS 86 30.692 73.169 23.288 1.00 0.00 C ATOM 650 SG CYS 86 32.029 72.228 23.980 1.00 0.00 S ATOM 651 N HIS 87 31.251 75.312 23.641 1.00 0.00 N ATOM 652 CA HIS 87 32.020 76.499 23.366 1.00 0.00 C ATOM 653 C HIS 87 31.506 77.529 22.377 1.00 0.00 C ATOM 654 O HIS 87 31.721 78.690 22.710 1.00 0.00 O ATOM 655 CB HIS 87 33.449 76.161 22.905 1.00 0.00 C ATOM 656 CG HIS 87 34.315 77.376 22.756 1.00 0.00 C ATOM 657 ND1 HIS 87 35.082 77.908 23.770 1.00 0.00 N ATOM 658 CD2 HIS 87 34.526 78.175 21.674 1.00 0.00 C ATOM 659 CE1 HIS 87 35.713 78.993 23.254 1.00 0.00 C ATOM 660 NE2 HIS 87 35.407 79.195 21.985 1.00 0.00 N ATOM 661 N ASP 88 31.008 77.145 21.136 1.00 0.00 N ATOM 662 CA ASP 88 30.362 77.574 19.846 1.00 0.00 C ATOM 663 C ASP 88 28.824 77.756 19.566 1.00 0.00 C ATOM 664 O ASP 88 28.464 78.372 18.575 1.00 0.00 O ATOM 665 CB ASP 88 30.861 76.686 18.698 1.00 0.00 C ATOM 666 CG ASP 88 32.353 76.939 18.557 1.00 0.00 C ATOM 667 OD1 ASP 88 32.729 78.089 18.205 1.00 0.00 O ATOM 668 OD2 ASP 88 33.138 75.985 18.802 1.00 0.00 O ATOM 669 N PHE 89 27.882 77.151 20.302 1.00 0.00 N ATOM 670 CA PHE 89 26.442 76.954 20.324 1.00 0.00 C ATOM 671 C PHE 89 25.620 78.054 20.706 1.00 0.00 C ATOM 672 O PHE 89 24.650 78.082 19.991 1.00 0.00 O ATOM 673 CB PHE 89 25.700 75.754 21.004 1.00 0.00 C ATOM 674 CG PHE 89 24.989 76.044 22.340 1.00 0.00 C ATOM 675 CD1 PHE 89 23.980 76.928 22.645 1.00 0.00 C ATOM 676 CD2 PHE 89 25.340 75.386 23.469 1.00 0.00 C ATOM 677 CE1 PHE 89 23.408 77.102 23.830 1.00 0.00 C ATOM 678 CE2 PHE 89 24.716 75.580 24.664 1.00 0.00 C ATOM 679 CZ PHE 89 23.733 76.429 24.909 1.00 0.00 C ATOM 680 N ASP 90 25.852 78.866 21.801 1.00 0.00 N ATOM 681 CA ASP 90 25.285 80.020 22.584 1.00 0.00 C ATOM 682 C ASP 90 25.423 81.544 22.176 1.00 0.00 C ATOM 683 O ASP 90 24.701 82.358 22.717 1.00 0.00 O ATOM 684 CB ASP 90 25.340 79.887 24.137 1.00 0.00 C ATOM 685 CG ASP 90 24.991 81.082 25.038 1.00 0.00 C ATOM 686 OD1 ASP 90 25.761 82.078 25.004 1.00 0.00 O ATOM 687 OD2 ASP 90 23.978 81.008 25.783 1.00 0.00 O ATOM 688 N GLU 91 26.354 82.037 21.296 1.00 0.00 N ATOM 689 CA GLU 91 26.050 83.207 20.393 1.00 0.00 C ATOM 690 C GLU 91 25.335 83.251 18.927 1.00 0.00 C ATOM 691 O GLU 91 24.997 84.339 18.549 1.00 0.00 O ATOM 692 CB GLU 91 27.105 84.322 20.266 1.00 0.00 C ATOM 693 CG GLU 91 27.353 85.090 21.567 1.00 0.00 C ATOM 694 CD GLU 91 26.109 85.908 21.878 1.00 0.00 C ATOM 695 OE1 GLU 91 24.993 85.324 21.846 1.00 0.00 O ATOM 696 OE2 GLU 91 26.257 87.130 22.150 1.00 0.00 O ATOM 697 N LEU 92 25.330 82.325 17.908 1.00 0.00 N ATOM 698 CA LEU 92 24.748 81.861 16.646 1.00 0.00 C ATOM 699 C LEU 92 23.484 80.932 16.581 1.00 0.00 C ATOM 700 O LEU 92 22.752 80.931 15.599 1.00 0.00 O ATOM 701 CB LEU 92 25.878 81.428 15.706 1.00 0.00 C ATOM 702 CG LEU 92 26.827 82.511 15.143 1.00 0.00 C ATOM 703 CD1 LEU 92 26.250 83.181 13.891 1.00 0.00 C ATOM 704 CD2 LEU 92 27.229 83.540 16.212 1.00 0.00 C ATOM 705 N CYS 93 23.192 79.950 17.459 1.00 0.00 N ATOM 706 CA CYS 93 21.798 79.472 17.372 1.00 0.00 C ATOM 707 C CYS 93 21.306 79.432 18.850 1.00 0.00 C ATOM 708 O CYS 93 21.817 78.650 19.642 1.00 0.00 O ATOM 709 CB CYS 93 21.268 78.299 16.297 1.00 0.00 C ATOM 710 SG CYS 93 20.902 78.180 14.404 1.00 0.00 S ATOM 711 N LEU 94 20.515 80.437 19.360 1.00 0.00 N ATOM 712 CA LEU 94 20.016 80.509 20.739 1.00 0.00 C ATOM 713 C LEU 94 18.770 79.756 21.076 1.00 0.00 C ATOM 714 O LEU 94 18.638 79.074 22.085 1.00 0.00 O ATOM 715 CB LEU 94 19.701 81.899 21.324 1.00 0.00 C ATOM 716 CG LEU 94 19.936 82.148 22.838 1.00 0.00 C ATOM 717 CD1 LEU 94 19.289 83.471 23.266 1.00 0.00 C ATOM 718 CD2 LEU 94 19.624 80.977 23.765 1.00 0.00 C ATOM 719 N LYS 95 17.801 79.853 20.190 1.00 0.00 N ATOM 720 CA LYS 95 16.452 79.612 20.535 1.00 0.00 C ATOM 721 C LYS 95 16.038 78.300 21.012 1.00 0.00 C ATOM 722 O LYS 95 15.115 78.253 21.820 1.00 0.00 O ATOM 723 CB LYS 95 15.406 80.140 19.536 1.00 0.00 C ATOM 724 CG LYS 95 13.953 79.808 19.880 1.00 0.00 C ATOM 725 CD LYS 95 12.930 80.574 19.039 1.00 0.00 C ATOM 726 CE LYS 95 11.478 80.240 19.387 1.00 0.00 C ATOM 727 NZ LYS 95 10.560 81.024 18.531 1.00 0.00 N TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 64.59 52.6 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 66.90 55.4 56 100.0 56 ARMSMC BURIED . . . . . . . . 58.30 45.5 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 91.00 33.3 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 92.25 31.4 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 96.63 28.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 76.66 45.5 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 85.53 39.1 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 82.31 41.2 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 85.46 38.9 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 85.80 40.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 71.88 55.6 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 73.93 62.5 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 61.04 57.1 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 101.06 50.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 37.44 60.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 37.44 60.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 39.23 50.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 29.19 100.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.50 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.50 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.0625 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 2.57 29 100.0 29 CRMSCA BURIED . . . . . . . . 2.31 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.64 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 2.71 142 100.0 142 CRMSMC BURIED . . . . . . . . 2.46 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 4.82 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 4.87 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 5.01 103 100.0 103 CRMSSC BURIED . . . . . . . . 4.28 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.78 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 3.92 219 100.0 219 CRMSALL BURIED . . . . . . . . 3.38 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.258 1.000 0.500 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 2.346 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 2.026 1.000 0.500 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.382 1.000 0.500 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 2.477 1.000 0.500 142 100.0 142 ERRMC BURIED . . . . . . . . 2.137 1.000 0.500 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.179 1.000 0.500 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 4.172 1.000 0.500 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 4.356 1.000 0.500 103 100.0 103 ERRSC BURIED . . . . . . . . 3.723 1.000 0.500 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.171 1.000 0.500 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 3.305 1.000 0.500 219 100.0 219 ERRALL BURIED . . . . . . . . 2.822 1.000 0.500 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 5 18 31 40 40 40 40 DISTCA CA (P) 12.50 45.00 77.50 100.00 100.00 40 DISTCA CA (RMS) 0.73 1.42 1.90 2.50 2.50 DISTCA ALL (N) 20 92 183 258 300 303 303 DISTALL ALL (P) 6.60 30.36 60.40 85.15 99.01 303 DISTALL ALL (RMS) 0.80 1.44 2.04 2.70 3.59 DISTALL END of the results output