####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 23 ( 184), selected 23 , name T0543TS457_1_1-D3 # Molecule2: number of CA atoms 386 ( 3136), selected 23 , name T0543-D3.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS457_1_1-D3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 141 - 153 4.77 11.85 LONGEST_CONTINUOUS_SEGMENT: 13 149 - 161 4.93 11.00 LCS_AVERAGE: 3.30 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 150 - 156 1.91 15.18 LCS_AVERAGE: 1.52 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 151 - 155 0.84 15.72 LCS_AVERAGE: 1.01 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 23 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 141 S 141 3 5 13 3 4 6 6 6 6 7 8 9 11 12 14 16 17 18 20 20 20 21 21 LCS_GDT H 142 H 142 4 5 13 4 4 6 6 6 6 7 8 9 11 12 14 16 17 18 20 20 20 21 21 LCS_GDT W 143 W 143 4 5 13 4 4 4 4 5 6 7 8 9 10 10 14 16 17 18 20 20 20 21 21 LCS_GDT V 144 V 144 4 5 13 4 4 6 6 6 6 7 8 9 10 10 14 16 17 18 20 20 20 21 21 LCS_GDT D 145 D 145 4 5 13 4 4 4 4 5 6 6 7 8 9 12 14 16 17 18 20 20 20 21 21 LCS_GDT D 146 D 146 3 5 13 0 3 3 4 5 6 7 9 10 11 12 14 16 17 18 20 20 20 21 21 LCS_GDT D 147 D 147 4 5 13 3 3 4 4 5 6 8 10 11 11 12 14 16 17 18 20 20 20 21 21 LCS_GDT C 148 C 148 4 5 13 3 3 4 4 5 6 8 10 11 11 12 14 16 17 18 20 20 20 21 21 LCS_GDT E 149 E 149 4 5 13 3 3 4 4 5 6 8 10 11 11 12 14 16 17 18 20 20 20 21 21 LCS_GDT E 150 E 150 4 7 13 3 3 4 6 6 7 8 10 11 11 12 14 16 17 18 20 20 20 21 21 LCS_GDT I 151 I 151 5 7 13 3 4 5 6 6 7 8 10 11 11 12 14 16 17 18 20 20 20 21 21 LCS_GDT K 152 K 152 5 7 13 3 4 5 6 6 7 7 8 8 10 12 12 13 15 16 16 19 20 20 21 LCS_GDT V 153 V 153 5 7 13 3 4 5 6 6 7 7 8 9 10 11 12 13 14 18 20 20 20 21 21 LCS_GDT P 154 P 154 5 7 13 3 3 5 6 6 7 7 10 11 11 12 14 16 17 18 20 20 20 21 21 LCS_GDT E 155 E 155 5 7 13 3 4 5 6 6 7 7 10 11 11 12 14 16 17 18 20 20 20 21 21 LCS_GDT C 156 C 156 3 7 13 3 4 6 6 6 7 8 10 11 11 12 14 16 17 18 20 20 20 21 21 LCS_GDT P 157 P 157 4 6 13 3 4 6 6 6 6 7 9 10 11 12 14 16 17 18 20 20 20 21 21 LCS_GDT A 158 A 158 4 6 13 3 4 4 5 6 6 7 7 7 7 8 9 12 13 15 20 20 20 21 21 LCS_GDT G 159 G 159 4 6 13 3 4 5 5 6 6 7 7 7 7 8 9 12 13 13 20 20 20 21 21 LCS_GDT F 160 F 160 4 6 13 3 4 6 6 6 6 7 9 10 11 12 14 16 17 18 20 20 20 21 21 LCS_GDT V 161 V 161 4 6 13 0 4 5 5 6 6 7 9 11 11 12 14 16 17 18 20 20 20 21 21 LCS_GDT R 162 R 162 4 6 10 0 4 5 5 6 6 8 10 11 11 12 14 14 17 18 19 19 20 21 21 LCS_GDT P 163 P 163 0 5 10 0 0 5 5 5 6 8 10 11 11 12 12 13 15 18 19 19 20 21 21 LCS_AVERAGE LCS_A: 1.94 ( 1.01 1.52 3.30 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 4 6 6 6 7 8 10 11 11 12 14 16 17 18 20 20 20 21 21 GDT PERCENT_AT 1.04 1.04 1.55 1.55 1.55 1.81 2.07 2.59 2.85 2.85 3.11 3.63 4.15 4.40 4.66 5.18 5.18 5.18 5.44 5.44 GDT RMS_LOCAL 0.41 0.41 1.04 1.04 1.04 1.91 2.81 3.14 3.32 3.32 3.64 4.53 4.84 5.03 5.25 5.73 5.73 5.66 6.00 6.00 GDT RMS_ALL_AT 29.45 29.45 8.08 8.08 8.08 15.18 9.09 9.00 8.83 8.83 9.25 6.73 6.71 6.67 6.66 6.81 6.81 6.73 6.66 6.66 # Checking swapping # possible swapping detected: E 150 E 150 # possible swapping detected: E 155 E 155 # possible swapping detected: F 160 F 160 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 141 S 141 13.454 0 0.056 0.620 14.561 0.000 0.000 LGA H 142 H 142 15.765 0 0.660 0.490 18.608 0.000 0.000 LGA W 143 W 143 15.401 0 0.024 0.703 19.162 0.000 0.000 LGA V 144 V 144 12.086 0 0.142 0.977 13.231 0.000 0.000 LGA D 145 D 145 10.795 0 0.559 0.610 17.247 1.905 0.952 LGA D 146 D 146 7.345 0 0.414 0.427 12.424 19.405 10.060 LGA D 147 D 147 2.924 0 0.593 0.615 9.717 63.690 36.071 LGA C 148 C 148 3.499 0 0.679 0.736 8.628 53.690 39.841 LGA E 149 E 149 1.880 0 0.605 1.217 9.927 77.381 41.429 LGA E 150 E 150 2.889 0 0.362 0.944 10.427 69.048 36.296 LGA I 151 I 151 1.754 0 0.498 0.609 8.007 66.786 50.060 LGA K 152 K 152 6.843 0 0.469 0.788 12.848 15.595 8.042 LGA V 153 V 153 8.209 0 0.634 0.595 10.706 13.810 8.367 LGA P 154 P 154 4.246 0 0.028 0.124 8.723 38.214 24.830 LGA E 155 E 155 3.589 0 0.559 0.883 6.979 45.714 35.767 LGA C 156 C 156 3.226 0 0.358 0.505 7.368 32.857 34.286 LGA P 157 P 157 9.357 0 0.649 0.824 11.734 3.690 8.707 LGA A 158 A 158 15.144 0 0.595 0.603 16.730 0.000 0.000 LGA G 159 G 159 15.761 0 0.210 0.210 15.761 0.000 0.000 LGA F 160 F 160 8.756 0 0.287 1.279 11.482 7.381 3.420 LGA V 161 V 161 5.058 0 0.736 1.377 9.099 36.905 23.333 LGA R 162 R 162 3.079 0 0.673 1.523 9.411 55.476 24.675 LGA P 163 P 163 3.451 0 0.585 0.540 6.284 50.119 40.136 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 23 92 92 100.00 183 183 100.00 386 SUMMARY(RMSD_GDC): 6.571 6.386 8.217 1.688 1.104 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 23 386 4.0 10 3.14 2.591 2.241 0.309 LGA_LOCAL RMSD: 3.138 Number of atoms: 10 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.001 Number of assigned atoms: 23 Std_ASGN_ATOMS RMSD: 6.571 Standard rmsd on all 23 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.509204 * X + 0.760975 * Y + -0.402031 * Z + -2.823518 Y_new = -0.085769 * X + 0.419932 * Y + 0.903493 * Z + 37.632122 Z_new = 0.856362 * X + 0.494544 * Y + -0.148563 * Z + 21.610630 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.974720 -1.028182 1.862623 [DEG: -170.4389 -58.9105 106.7204 ] ZXZ: -2.722927 1.719911 1.047089 [DEG: -156.0122 98.5436 59.9938 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS457_1_1-D3 REMARK 2: T0543-D3.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS457_1_1-D3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 23 386 4.0 10 3.14 2.241 6.57 REMARK ---------------------------------------------------------- MOLECULE T0543TS457_1_1-D3 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 1 REMARK PFRMAT TS REMARK TARGET T0543 REMARK PARENT 2ys0_A ATOM 2080 N SER 141 -12.524 73.399 10.174 1.00 0.50 N ATOM 2081 CA SER 141 -13.816 73.277 9.510 1.00 0.50 C ATOM 2082 C SER 141 -14.387 71.874 9.668 1.00 0.50 C ATOM 2083 O SER 141 -13.644 70.894 9.729 1.00 0.50 O ATOM 2084 CB SER 141 -13.687 73.619 8.023 1.00 0.50 C ATOM 2085 OG SER 141 -14.935 73.471 7.369 1.00 0.50 O ATOM 2091 N HIS 142 -15.711 71.782 9.736 1.00 0.50 N ATOM 2092 CA HIS 142 -16.383 70.497 9.886 1.00 0.50 C ATOM 2093 C HIS 142 -17.289 70.208 8.696 1.00 0.50 C ATOM 2094 O HIS 142 -17.470 69.053 8.308 1.00 0.50 O ATOM 2095 CB HIS 142 -17.206 70.473 11.182 1.00 0.50 C ATOM 2096 CG HIS 142 -16.373 70.658 12.413 1.00 0.50 C ATOM 2097 ND1 HIS 142 -15.562 69.667 12.922 1.00 0.50 N ATOM 2098 CD2 HIS 142 -16.230 71.733 13.230 1.00 0.50 C ATOM 2099 CE1 HIS 142 -14.954 70.125 14.006 1.00 0.50 C ATOM 2100 NE2 HIS 142 -15.342 71.375 14.214 1.00 0.50 N ATOM 2108 N TRP 143 -17.858 71.261 8.121 1.00 0.50 N ATOM 2109 CA TRP 143 -18.699 71.129 6.937 1.00 0.50 C ATOM 2110 C TRP 143 -17.884 70.681 5.730 1.00 0.50 C ATOM 2111 O TRP 143 -18.250 69.729 5.041 1.00 0.50 O ATOM 2112 CB TRP 143 -19.402 72.456 6.629 1.00 0.50 C ATOM 2113 CG TRP 143 -20.265 72.418 5.402 1.00 0.50 C ATOM 2114 CD1 TRP 143 -20.835 71.312 4.834 1.00 0.50 C ATOM 2115 CD2 TRP 143 -20.653 73.535 4.594 1.00 0.50 C ATOM 2116 NE1 TRP 143 -21.555 71.675 3.721 1.00 0.50 N ATOM 2117 CE2 TRP 143 -21.460 73.030 3.551 1.00 0.50 C ATOM 2118 CE3 TRP 143 -20.397 74.909 4.653 1.00 0.50 C ATOM 2119 CZ2 TRP 143 -22.015 73.858 2.570 1.00 0.50 C ATOM 2120 CZ3 TRP 143 -20.948 75.732 3.677 1.00 0.50 C ATOM 2121 CH2 TRP 143 -21.746 75.203 2.651 1.00 0.50 H ATOM 2132 N VAL 144 -16.780 71.375 5.479 1.00 0.50 N ATOM 2133 CA VAL 144 -15.946 71.093 4.317 1.00 0.50 C ATOM 2134 C VAL 144 -15.079 69.861 4.546 1.00 0.50 C ATOM 2135 O VAL 144 -15.041 68.954 3.716 1.00 0.50 O ATOM 2136 CB VAL 144 -15.043 72.297 3.967 1.00 0.50 C ATOM 2137 CG1 VAL 144 -14.094 71.949 2.826 1.00 0.50 C ATOM 2138 CG2 VAL 144 -15.891 73.509 3.597 1.00 0.50 C ATOM 2148 N ASP 145 -14.383 69.837 5.677 1.00 0.50 N ATOM 2149 CA ASP 145 -13.633 68.657 6.091 1.00 0.50 C ATOM 2150 C ASP 145 -12.323 69.043 6.763 1.00 0.50 C ATOM 2151 O ASP 145 -11.434 69.616 6.131 1.00 0.50 O ATOM 2152 CB ASP 145 -13.357 67.751 4.887 1.00 0.50 C ATOM 2153 CG ASP 145 -14.594 67.028 4.388 1.00 0.50 C ATOM 2154 OD1 ASP 145 -15.630 67.035 5.086 1.00 0.50 O ATOM 2155 OD2 ASP 145 -14.526 66.442 3.284 1.00 0.50 O ATOM 2160 N ASP 146 -12.207 68.728 8.049 1.00 0.50 N ATOM 2161 CA ASP 146 -11.004 69.043 8.810 1.00 0.50 C ATOM 2162 C ASP 146 -9.935 69.662 7.919 1.00 0.50 C ATOM 2163 O ASP 146 -8.806 69.176 7.856 1.00 0.50 O ATOM 2164 CB ASP 146 -10.456 67.783 9.487 1.00 0.50 C ATOM 2165 CG ASP 146 -11.306 67.316 10.652 1.00 0.50 C ATOM 2166 OD1 ASP 146 -12.188 68.072 11.111 1.00 0.50 O ATOM 2167 OD2 ASP 146 -11.085 66.175 11.119 1.00 0.50 O ATOM 2172 N ASP 147 -10.298 70.739 7.228 1.00 0.50 N ATOM 2173 CA ASP 147 -9.371 71.426 6.338 1.00 0.50 C ATOM 2174 C ASP 147 -9.369 70.797 4.951 1.00 0.50 C ATOM 2175 O ASP 147 -9.453 71.497 3.942 1.00 0.50 O ATOM 2176 CB ASP 147 -7.955 71.407 6.924 1.00 0.50 C ATOM 2177 CG ASP 147 -7.829 70.517 8.146 1.00 0.50 C ATOM 2178 OD1 ASP 147 -8.511 70.770 9.162 1.00 0.50 O ATOM 2179 OD2 ASP 147 -7.030 69.555 8.091 1.00 0.50 O ATOM 2184 N CYS 148 -9.270 69.474 4.908 1.00 0.50 N ATOM 2185 CA CYS 148 -9.258 68.747 3.643 1.00 0.50 C ATOM 2186 C CYS 148 -10.120 67.494 3.718 1.00 0.50 C ATOM 2187 O CYS 148 -10.505 66.930 2.694 1.00 0.50 O ATOM 2188 CB CYS 148 -7.824 68.362 3.262 1.00 0.50 C ATOM 2189 SG CYS 148 -6.893 69.709 2.489 1.00 0.50 S ATOM 2195 N GLU 149 -10.419 67.061 4.939 1.00 0.50 N ATOM 2196 CA GLU 149 -11.237 65.873 5.150 1.00 0.50 C ATOM 2197 C GLU 149 -11.048 64.865 4.023 1.00 0.50 C ATOM 2198 O GLU 149 -10.718 63.705 4.265 1.00 0.50 O ATOM 2199 CB GLU 149 -12.717 66.255 5.262 1.00 0.50 C ATOM 2200 CG GLU 149 -13.638 65.071 5.520 1.00 0.50 C ATOM 2201 CD GLU 149 -13.447 64.448 6.891 1.00 0.50 C ATOM 2202 OE1 GLU 149 -12.729 65.030 7.732 1.00 0.50 O ATOM 2203 OE2 GLU 149 -14.019 63.356 7.125 1.00 0.50 O ATOM 2210 N GLU 150 -11.260 65.316 2.792 1.00 0.50 N ATOM 2211 CA GLU 150 -11.113 64.455 1.625 1.00 0.50 C ATOM 2212 C GLU 150 -9.862 63.592 1.731 1.00 0.50 C ATOM 2213 O GLU 150 -8.945 63.708 0.917 1.00 0.50 O ATOM 2214 CB GLU 150 -11.058 65.295 0.344 1.00 0.50 C ATOM 2215 CG GLU 150 -12.363 66.011 0.024 1.00 0.50 C ATOM 2216 CD GLU 150 -12.278 66.888 -1.213 1.00 0.50 C ATOM 2217 OE1 GLU 150 -11.193 66.983 -1.822 1.00 0.50 O ATOM 2218 OE2 GLU 150 -13.316 67.496 -1.573 1.00 0.50 O ATOM 2225 N ILE 151 -9.828 62.729 2.740 1.00 0.50 N ATOM 2226 CA ILE 151 -8.689 61.845 2.954 1.00 0.50 C ATOM 2227 C ILE 151 -7.937 62.215 4.226 1.00 0.50 C ATOM 2228 O ILE 151 -7.076 61.467 4.690 1.00 0.50 O ATOM 2229 CB ILE 151 -7.717 61.886 1.752 1.00 0.50 C ATOM 2230 CG1 ILE 151 -8.380 61.277 0.510 1.00 0.50 C ATOM 2231 CG2 ILE 151 -6.415 61.154 2.083 1.00 0.50 C ATOM 2232 CD1 ILE 151 -7.600 61.507 -0.775 1.00 0.50 C ATOM 2244 N LYS 152 -8.264 63.375 4.784 1.00 0.50 N ATOM 2245 CA LYS 152 -7.620 63.848 6.004 1.00 0.50 C ATOM 2246 C LYS 152 -6.104 63.873 5.853 1.00 0.50 C ATOM 2247 O LYS 152 -5.392 63.125 6.524 1.00 0.50 O ATOM 2248 CB LYS 152 -8.009 62.964 7.192 1.00 0.50 C ATOM 2249 CG LYS 152 -9.494 62.995 7.520 1.00 0.50 C ATOM 2250 CD LYS 152 -9.813 62.133 8.734 1.00 0.50 C ATOM 2251 CE LYS 152 -11.297 62.173 9.080 1.00 0.50 C ATOM 2252 NZ LYS 152 -11.621 61.279 10.228 1.00 0.50 N ATOM 2266 N VAL 153 -5.617 64.735 4.967 1.00 0.50 N ATOM 2267 CA VAL 153 -4.185 64.858 4.726 1.00 0.50 C ATOM 2268 C VAL 153 -3.765 64.074 3.489 1.00 0.50 C ATOM 2269 O VAL 153 -2.943 64.538 2.698 1.00 0.50 O ATOM 2270 CB VAL 153 -3.368 64.370 5.943 1.00 0.50 C ATOM 2271 CG1 VAL 153 -3.532 62.867 6.139 1.00 0.50 C ATOM 2272 CG2 VAL 153 -1.894 64.721 5.768 1.00 0.50 C ATOM 2282 N PRO 154 -4.333 62.884 3.328 1.00 0.50 N ATOM 2283 CA PRO 154 -4.019 62.034 2.187 1.00 0.50 C ATOM 2284 C PRO 154 -2.708 61.287 2.399 1.00 0.50 C ATOM 2285 O PRO 154 -1.765 61.825 2.980 1.00 0.50 O ATOM 2286 CB PRO 154 -3.936 63.015 1.016 1.00 0.50 C ATOM 2287 CG PRO 154 -4.755 64.189 1.470 1.00 0.50 C ATOM 2288 CD PRO 154 -4.498 64.275 2.958 1.00 0.50 C ATOM 2296 N GLU 155 -2.656 60.047 1.927 1.00 0.50 N ATOM 2297 CA GLU 155 -1.460 59.224 2.065 1.00 0.50 C ATOM 2298 C GLU 155 -0.308 60.022 2.663 1.00 0.50 C ATOM 2299 O GLU 155 0.326 59.588 3.624 1.00 0.50 O ATOM 2300 CB GLU 155 -1.045 58.652 0.706 1.00 0.50 C ATOM 2301 CG GLU 155 -0.624 59.712 -0.303 1.00 0.50 C ATOM 2302 CD GLU 155 -0.273 59.138 -1.664 1.00 0.50 C ATOM 2303 OE1 GLU 155 -0.383 57.908 -1.856 1.00 0.50 O ATOM 2304 OE2 GLU 155 0.128 59.932 -2.550 1.00 0.50 O ATOM 2311 N CYS 156 -0.044 61.190 2.087 1.00 0.50 N ATOM 2312 CA CYS 156 1.033 62.051 2.563 1.00 0.50 C ATOM 2313 C CYS 156 1.047 62.127 4.084 1.00 0.50 C ATOM 2314 O CYS 156 0.676 63.145 4.667 1.00 0.50 O ATOM 2315 CB CYS 156 0.887 63.461 1.978 1.00 0.50 C ATOM 2316 SG CYS 156 1.792 63.699 0.428 1.00 0.50 S ATOM 2322 N PRO 157 1.476 61.043 4.722 1.00 0.50 N ATOM 2323 CA PRO 157 1.538 60.984 6.178 1.00 0.50 C ATOM 2324 C PRO 157 0.187 60.607 6.772 1.00 0.50 C ATOM 2325 O PRO 157 0.099 60.201 7.931 1.00 0.50 O ATOM 2326 CB PRO 157 1.966 62.397 6.578 1.00 0.50 C ATOM 2327 CG PRO 157 2.976 62.777 5.536 1.00 0.50 C ATOM 2328 CD PRO 157 2.356 62.335 4.228 1.00 0.50 C ATOM 2336 N ALA 158 -0.865 60.745 5.972 1.00 0.50 N ATOM 2337 CA ALA 158 -2.214 60.419 6.418 1.00 0.50 C ATOM 2338 C ALA 158 -2.417 58.911 6.501 1.00 0.50 C ATOM 2339 O ALA 158 -2.852 58.390 7.529 1.00 0.50 O ATOM 2340 CB ALA 158 -3.244 61.033 5.474 1.00 0.50 C ATOM 2346 N GLY 159 -2.102 58.216 5.414 1.00 0.50 N ATOM 2347 CA GLY 159 -2.249 56.766 5.363 1.00 0.50 C ATOM 2348 C GLY 159 -1.030 56.111 4.724 1.00 0.50 C ATOM 2349 O GLY 159 -1.108 54.988 4.226 1.00 0.50 O ATOM 2353 N PHE 160 0.093 56.820 4.740 1.00 0.50 N ATOM 2354 CA PHE 160 1.330 56.309 4.162 1.00 0.50 C ATOM 2355 C PHE 160 2.384 57.404 4.062 1.00 0.50 C ATOM 2356 O PHE 160 2.134 58.555 4.419 1.00 0.50 O ATOM 2357 CB PHE 160 1.067 55.713 2.773 1.00 0.50 C ATOM 2358 CG PHE 160 2.298 55.136 2.119 1.00 0.50 C ATOM 2359 CD1 PHE 160 2.783 53.889 2.497 1.00 0.50 C ATOM 2360 CD2 PHE 160 2.967 55.844 1.127 1.00 0.50 C ATOM 2361 CE1 PHE 160 3.920 53.355 1.896 1.00 0.50 C ATOM 2362 CE2 PHE 160 4.105 55.318 0.520 1.00 0.50 C ATOM 2363 CZ PHE 160 4.580 54.071 0.907 1.00 0.50 C ATOM 2373 N VAL 161 3.565 57.038 3.574 1.00 0.50 N ATOM 2374 CA VAL 161 4.661 57.988 3.427 1.00 0.50 C ATOM 2375 C VAL 161 5.979 57.387 3.897 1.00 0.50 C ATOM 2376 O VAL 161 5.997 56.361 4.576 1.00 0.50 O ATOM 2377 CB VAL 161 4.383 59.291 4.211 1.00 0.50 C ATOM 2378 CG1 VAL 161 4.377 59.027 5.712 1.00 0.50 C ATOM 2379 CG2 VAL 161 5.425 60.350 3.867 1.00 0.50 C ATOM 2389 N ARG 162 7.081 58.030 3.529 1.00 0.50 N ATOM 2390 CA ARG 162 8.408 57.560 3.911 1.00 0.50 C ATOM 2391 C ARG 162 8.435 57.117 5.369 1.00 0.50 C ATOM 2392 O ARG 162 9.464 56.669 5.873 1.00 0.50 O ATOM 2393 CB ARG 162 9.451 58.657 3.683 1.00 0.50 C ATOM 2394 CG ARG 162 9.680 58.988 2.215 1.00 0.50 C ATOM 2395 CD ARG 162 10.670 60.131 2.047 1.00 0.50 C ATOM 2396 NE ARG 162 12.005 59.761 2.507 1.00 0.50 N ATOM 2397 CZ ARG 162 13.021 60.607 2.659 1.00 0.50 C ATOM 2398 NH1 ARG 162 12.832 61.922 2.575 1.00 0.50 H ATOM 2399 NH2 ARG 162 14.244 60.132 2.886 1.00 0.50 H ATOM 2413 N PRO 163 7.296 57.247 6.043 1.00 0.50 N ATOM 2414 CA PRO 163 7.187 56.859 7.444 1.00 0.50 C ATOM 2415 C PRO 163 8.224 57.579 8.297 1.00 0.50 C ATOM 2416 O PRO 163 8.290 57.380 9.510 1.00 0.50 O ATOM 2417 CB PRO 163 7.415 55.346 7.420 1.00 0.50 C ATOM 2418 CG PRO 163 8.270 55.130 6.205 1.00 0.50 C ATOM 2419 CD PRO 163 7.787 56.166 5.213 1.00 0.50 C ATOM 2427 OXT PRO 163 9.016 58.373 7.782 1.00 0.50 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 183 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 116.12 18.2 44 5.7 767 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 306 ARMSMC SURFACE . . . . . . . . 119.94 16.2 37 10.7 347 ARMSMC BURIED . . . . . . . . 93.38 28.6 7 1.7 420 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 71.80 47.6 21 6.3 334 ARMSSC1 RELIABLE SIDE CHAINS . 68.51 50.0 18 5.8 310 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 132 ARMSSC1 SURFACE . . . . . . . . 74.65 47.1 17 10.7 159 ARMSSC1 BURIED . . . . . . . . 58.10 50.0 4 2.3 175 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 44.90 60.0 15 6.1 247 ARMSSC2 RELIABLE SIDE CHAINS . 46.37 57.1 14 7.7 183 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 100 ARMSSC2 SURFACE . . . . . . . . 45.37 63.6 11 9.3 118 ARMSSC2 BURIED . . . . . . . . 43.58 50.0 4 3.1 129 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 51.02 80.0 5 7.0 71 ARMSSC3 RELIABLE SIDE CHAINS . 51.02 80.0 5 8.2 61 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 32 ARMSSC3 SURFACE . . . . . . . . 51.02 80.0 5 11.4 44 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 27 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 76.33 50.0 2 6.2 32 ARMSSC4 RELIABLE SIDE CHAINS . 76.33 50.0 2 6.2 32 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 15 ARMSSC4 SURFACE . . . . . . . . 76.33 50.0 2 9.1 22 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.57 (Number of atoms: 23) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.57 23 6.0 386 CRMSCA CRN = ALL/NP . . . . . 0.2857 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 153 CRMSCA SURFACE . . . . . . . . 6.49 19 10.8 176 CRMSCA BURIED . . . . . . . . 6.95 4 1.9 210 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.69 114 6.0 1902 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 758 CRMSMC SURFACE . . . . . . . . 6.51 94 10.8 872 CRMSMC BURIED . . . . . . . . 7.48 20 1.9 1030 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 9.84 91 5.7 1592 CRMSSC RELIABLE SIDE CHAINS . 10.09 81 6.0 1352 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 633 CRMSSC SURFACE . . . . . . . . 9.76 67 8.8 764 CRMSSC BURIED . . . . . . . . 10.04 24 2.9 828 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.29 183 5.8 3136 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 1245 CRMSALL SURFACE . . . . . . . . 8.06 143 9.7 1468 CRMSALL BURIED . . . . . . . . 9.06 40 2.4 1668 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.670 0.832 0.416 23 6.0 386 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 153 ERRCA SURFACE . . . . . . . . 5.568 0.829 0.414 19 10.8 176 ERRCA BURIED . . . . . . . . 6.156 0.850 0.425 4 1.9 210 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.691 0.828 0.414 114 6.0 1902 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 758 ERRMC SURFACE . . . . . . . . 5.535 0.825 0.412 94 10.8 872 ERRMC BURIED . . . . . . . . 6.423 0.842 0.421 20 1.9 1030 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.486 0.869 0.435 91 5.7 1592 ERRSC RELIABLE SIDE CHAINS . 8.741 0.873 0.437 81 6.0 1352 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 633 ERRSC SURFACE . . . . . . . . 8.341 0.870 0.435 67 8.8 764 ERRSC BURIED . . . . . . . . 8.889 0.867 0.434 24 2.9 828 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.958 0.846 0.423 183 5.8 3136 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 1245 ERRALL SURFACE . . . . . . . . 6.700 0.843 0.421 143 9.7 1468 ERRALL BURIED . . . . . . . . 7.879 0.859 0.430 40 2.4 1668 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 9 21 23 386 DISTCA CA (P) 0.00 0.00 0.26 2.33 5.44 386 DISTCA CA (RMS) 0.00 0.00 2.77 4.13 6.04 DISTCA ALL (N) 0 1 10 55 138 183 3136 DISTALL ALL (P) 0.00 0.03 0.32 1.75 4.40 3136 DISTALL ALL (RMS) 0.00 1.84 2.51 3.93 6.17 DISTALL END of the results output