####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS452_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS452_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 56 - 95 1.99 1.99 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 56 - 95 1.99 1.99 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 72 - 94 0.86 2.09 LCS_AVERAGE: 38.56 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 7 40 40 9 25 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 57 S 57 7 40 40 14 25 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 58 C 58 7 40 40 13 25 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 59 K 59 7 40 40 13 25 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT G 60 G 60 7 40 40 9 25 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT R 61 R 61 7 40 40 13 25 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 62 C 62 7 40 40 14 25 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT F 63 F 63 4 40 40 3 4 6 20 30 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 64 E 64 4 40 40 7 25 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 65 L 65 4 40 40 3 4 6 28 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT Q 66 Q 66 4 40 40 3 4 12 18 22 33 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 67 E 67 4 40 40 4 14 28 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT V 68 V 68 4 40 40 3 4 4 5 19 21 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT G 69 G 69 4 40 40 0 3 4 6 17 33 36 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT P 70 P 70 4 40 40 2 4 4 7 11 13 18 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT P 71 P 71 4 40 40 3 4 24 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 72 D 72 23 40 40 3 22 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 73 C 73 23 40 40 14 25 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT R 74 R 74 23 40 40 14 25 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 75 C 75 23 40 40 14 25 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 76 D 76 23 40 40 14 25 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT N 77 N 77 23 40 40 4 17 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 78 L 78 23 40 40 9 25 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 79 C 79 23 40 40 3 25 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 80 K 80 23 40 40 14 25 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 81 S 81 23 40 40 3 14 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT Y 82 Y 82 23 40 40 14 25 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 83 S 83 23 40 40 11 25 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 84 S 84 23 40 40 9 25 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 85 C 85 23 40 40 9 25 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 86 C 86 23 40 40 5 24 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT H 87 H 87 23 40 40 6 24 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 88 D 88 23 40 40 14 25 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT F 89 F 89 23 40 40 14 25 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 90 D 90 23 40 40 14 25 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 91 E 91 23 40 40 14 25 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 92 L 92 23 40 40 14 25 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 93 C 93 23 40 40 14 25 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 94 L 94 23 40 40 5 24 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 95 K 95 3 40 40 3 3 5 27 30 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_AVERAGE LCS_A: 79.52 ( 38.56 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 14 25 31 32 34 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 GDT PERCENT_AT 35.00 62.50 77.50 80.00 85.00 85.00 90.00 95.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.37 0.61 0.82 0.90 1.10 1.10 1.37 1.62 1.80 1.99 1.99 1.99 1.99 1.99 1.99 1.99 1.99 1.99 1.99 1.99 GDT RMS_ALL_AT 2.06 2.04 2.07 2.05 2.04 2.04 2.04 2.05 2.00 1.99 1.99 1.99 1.99 1.99 1.99 1.99 1.99 1.99 1.99 1.99 # Checking swapping # possible swapping detected: E 64 E 64 # possible swapping detected: E 67 E 67 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 0.729 0 0.177 0.177 0.729 95.238 95.238 LGA S 57 S 57 0.382 0 0.204 0.612 2.485 88.452 84.841 LGA C 58 C 58 0.470 0 0.238 0.252 1.498 92.976 92.143 LGA K 59 K 59 0.397 0 0.534 0.990 3.972 79.048 78.889 LGA G 60 G 60 0.869 0 0.107 0.107 1.163 90.595 90.595 LGA R 61 R 61 0.715 0 0.077 0.859 2.438 90.476 85.714 LGA C 62 C 62 0.264 0 0.609 0.535 1.516 93.214 95.476 LGA F 63 F 63 3.625 0 0.180 0.233 9.234 57.500 27.056 LGA E 64 E 64 0.973 0 0.643 0.855 2.828 79.881 73.492 LGA L 65 L 65 2.697 0 0.619 1.294 7.195 59.286 46.488 LGA Q 66 Q 66 3.981 0 0.027 1.069 11.102 56.071 27.672 LGA E 67 E 67 2.174 0 0.169 1.214 8.431 75.119 41.323 LGA V 68 V 68 3.621 0 0.585 0.557 7.576 46.667 31.565 LGA G 69 G 69 5.336 0 0.472 0.472 5.336 30.476 30.476 LGA P 70 P 70 6.257 0 0.045 0.102 10.447 22.976 13.946 LGA P 71 P 71 3.011 0 0.124 0.319 3.938 59.762 52.721 LGA D 72 D 72 1.207 3 0.513 0.544 2.723 77.262 45.774 LGA C 73 C 73 0.389 0 0.114 0.725 2.245 92.976 86.349 LGA R 74 R 74 0.421 0 0.072 0.785 3.956 97.619 76.061 LGA C 75 C 75 0.505 0 0.057 0.101 0.796 92.857 92.063 LGA D 76 D 76 0.613 0 0.098 0.373 1.192 90.595 90.536 LGA N 77 N 77 1.672 0 0.102 0.366 3.699 79.286 64.702 LGA L 78 L 78 1.081 0 0.356 0.626 2.425 79.524 76.369 LGA C 79 C 79 1.044 0 0.070 0.133 1.160 85.952 84.444 LGA K 80 K 80 0.132 0 0.100 0.864 2.829 90.595 84.021 LGA S 81 S 81 1.747 0 0.125 0.784 2.866 79.286 71.905 LGA Y 82 Y 82 0.384 0 0.134 0.252 1.026 97.619 92.897 LGA S 83 S 83 0.892 0 0.097 0.219 1.270 90.476 87.460 LGA S 84 S 84 0.942 0 0.123 0.110 0.998 92.857 92.063 LGA C 85 C 85 0.661 0 0.048 0.071 1.241 90.476 88.968 LGA C 86 C 86 1.200 0 0.098 0.150 1.493 81.429 81.429 LGA H 87 H 87 1.312 0 0.077 1.034 8.109 85.952 52.619 LGA D 88 D 88 0.679 0 0.182 1.120 3.666 90.476 77.024 LGA F 89 F 89 0.522 0 0.166 0.287 0.795 92.857 91.342 LGA D 90 D 90 0.573 0 0.030 0.725 1.739 95.238 90.714 LGA E 91 E 91 0.258 0 0.059 0.826 3.127 100.000 85.397 LGA L 92 L 92 0.093 0 0.210 1.024 2.756 95.357 87.738 LGA C 93 C 93 0.267 0 0.489 0.465 2.607 86.905 89.683 LGA L 94 L 94 1.289 0 0.368 1.308 7.631 77.262 51.488 LGA K 95 K 95 3.822 0 0.602 1.197 11.867 44.881 26.772 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 1.989 1.886 3.244 80.137 70.886 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 38 1.62 84.375 91.096 2.207 LGA_LOCAL RMSD: 1.622 Number of atoms: 38 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.047 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 1.989 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.469903 * X + -0.761161 * Y + -0.447019 * Z + 62.109013 Y_new = -0.353189 * X + 0.626232 * Y + -0.695047 * Z + 121.302933 Z_new = 0.808980 * X + -0.168722 * Y + -0.563102 * Z + 66.294838 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.497055 -0.942415 -2.850475 [DEG: -143.0707 -53.9964 -163.3202 ] ZXZ: -0.571544 2.168931 1.776411 [DEG: -32.7470 124.2706 101.7808 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS452_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS452_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 38 1.62 91.096 1.99 REMARK ---------------------------------------------------------- MOLECULE T0543TS452_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT 2cqw_A ATOM 422 N GLY 56 34.634 72.265 18.293 1.00 99.90 N ATOM 423 CA GLY 56 33.935 72.470 19.525 1.00 99.90 C ATOM 424 C GLY 56 33.042 73.645 19.317 1.00 99.90 C ATOM 425 O GLY 56 33.026 74.579 20.117 1.00 99.90 O ATOM 426 N SER 57 32.276 73.626 18.210 1.00 99.90 N ATOM 427 CA SER 57 31.452 74.749 17.881 1.00 99.90 C ATOM 428 C SER 57 30.065 74.230 17.685 1.00 99.90 C ATOM 429 O SER 57 29.803 73.046 17.889 1.00 99.90 O ATOM 430 CB SER 57 31.882 75.448 16.580 1.00 99.90 C ATOM 431 OG SER 57 31.869 74.523 15.503 1.00 99.90 O ATOM 432 N CYS 58 29.127 75.116 17.298 1.00 99.90 N ATOM 433 CA CYS 58 27.802 74.663 16.996 1.00 99.90 C ATOM 434 C CYS 58 27.386 75.325 15.726 1.00 99.90 C ATOM 435 O CYS 58 26.282 75.859 15.642 1.00 99.90 O ATOM 436 CB CYS 58 26.766 75.070 18.058 1.00 99.90 C ATOM 437 SG CYS 58 27.060 74.273 19.667 1.00 99.90 S ATOM 438 N LYS 59 28.270 75.309 14.707 1.00 99.90 N ATOM 439 CA LYS 59 28.113 76.184 13.580 1.00 99.90 C ATOM 440 C LYS 59 26.996 75.662 12.735 1.00 99.90 C ATOM 441 O LYS 59 25.977 76.328 12.558 1.00 99.90 O ATOM 442 CB LYS 59 29.364 76.261 12.689 1.00 99.90 C ATOM 443 CG LYS 59 29.220 77.257 11.536 1.00 99.90 C ATOM 444 CD LYS 59 30.505 77.462 10.730 1.00 99.90 C ATOM 445 CE LYS 59 31.653 78.061 11.546 1.00 99.90 C ATOM 446 NZ LYS 59 31.404 79.498 11.796 1.00 99.90 N ATOM 447 N GLY 60 27.158 74.438 12.203 1.00 99.90 N ATOM 448 CA GLY 60 26.054 73.800 11.554 1.00 99.90 C ATOM 449 C GLY 60 25.745 72.565 12.333 1.00 99.90 C ATOM 450 O GLY 60 25.086 71.651 11.838 1.00 99.90 O ATOM 451 N ARG 61 26.233 72.508 13.585 1.00 99.90 N ATOM 452 CA ARG 61 26.129 71.306 14.349 1.00 99.90 C ATOM 453 C ARG 61 24.901 71.402 15.196 1.00 99.90 C ATOM 454 O ARG 61 24.675 70.567 16.069 1.00 99.90 O ATOM 455 CB ARG 61 27.339 71.106 15.276 1.00 99.90 C ATOM 456 CG ARG 61 28.641 70.880 14.505 1.00 99.90 C ATOM 457 CD ARG 61 29.876 70.734 15.395 1.00 99.90 C ATOM 458 NE ARG 61 29.433 70.109 16.676 1.00 99.90 N ATOM 459 CZ ARG 61 29.414 68.753 16.881 1.00 99.90 C ATOM 460 NH1 ARG 61 29.788 67.823 15.946 1.00 99.90 H ATOM 461 NH2 ARG 61 28.991 68.301 18.098 1.00 99.90 H ATOM 462 N CYS 62 24.063 72.427 14.946 1.00 99.90 N ATOM 463 CA CYS 62 22.850 72.573 15.692 1.00 99.90 C ATOM 464 C CYS 62 21.925 71.489 15.252 1.00 99.90 C ATOM 465 O CYS 62 21.086 71.021 16.021 1.00 99.90 O ATOM 466 CB CYS 62 22.145 73.912 15.418 1.00 99.90 C ATOM 467 SG CYS 62 23.146 75.342 15.928 1.00 99.90 S ATOM 468 N PHE 63 22.064 71.060 13.985 1.00 99.90 N ATOM 469 CA PHE 63 21.034 70.287 13.357 1.00 99.90 C ATOM 470 C PHE 63 21.181 68.858 13.784 1.00 99.90 C ATOM 471 O PHE 63 20.305 68.034 13.527 1.00 99.90 O ATOM 472 CB PHE 63 21.133 70.324 11.820 1.00 99.90 C ATOM 473 CG PHE 63 20.978 71.743 11.383 1.00 99.90 C ATOM 474 CD1 PHE 63 19.729 72.273 11.155 1.00 99.90 C ATOM 475 CD2 PHE 63 22.081 72.548 11.198 1.00 99.90 C ATOM 476 CE1 PHE 63 19.580 73.580 10.752 1.00 99.90 C ATOM 477 CE2 PHE 63 21.939 73.856 10.795 1.00 99.90 C ATOM 478 CZ PHE 63 20.686 74.375 10.571 1.00 99.90 C ATOM 479 N GLU 64 22.305 68.524 14.444 1.00 99.90 N ATOM 480 CA GLU 64 22.899 67.242 14.220 1.00 99.90 C ATOM 481 C GLU 64 22.180 66.183 15.005 1.00 99.90 C ATOM 482 O GLU 64 22.086 65.055 14.525 1.00 99.90 O ATOM 483 CB GLU 64 24.368 67.194 14.658 1.00 99.90 C ATOM 484 CG GLU 64 25.351 67.956 13.778 1.00 99.90 C ATOM 485 CD GLU 64 26.729 67.624 14.327 1.00 99.90 C ATOM 486 OE1 GLU 64 26.893 67.750 15.570 1.00 99.90 O ATOM 487 OE2 GLU 64 27.622 67.228 13.531 1.00 99.90 O ATOM 488 N LEU 65 21.718 66.527 16.245 1.00 99.90 N ATOM 489 CA LEU 65 21.485 65.643 17.385 1.00 99.90 C ATOM 490 C LEU 65 22.723 64.847 17.769 1.00 99.90 C ATOM 491 O LEU 65 23.799 65.059 17.215 1.00 99.90 O ATOM 492 CB LEU 65 20.208 64.755 17.297 1.00 99.90 C ATOM 493 CG LEU 65 19.895 63.968 18.588 1.00 99.90 C ATOM 494 CD1 LEU 65 19.016 64.786 19.549 1.00 99.90 C ATOM 495 CD2 LEU 65 19.294 62.586 18.274 1.00 99.90 C ATOM 496 N GLN 66 22.632 63.961 18.803 1.00 99.90 N ATOM 497 CA GLN 66 23.792 63.728 19.632 1.00 99.90 C ATOM 498 C GLN 66 24.789 62.855 18.925 1.00 99.90 C ATOM 499 O GLN 66 24.447 61.912 18.211 1.00 99.90 O ATOM 500 CB GLN 66 23.494 63.122 21.028 1.00 99.90 C ATOM 501 CG GLN 66 22.618 61.862 21.056 1.00 99.90 C ATOM 502 CD GLN 66 22.869 61.121 22.364 1.00 99.90 C ATOM 503 OE1 GLN 66 23.460 60.042 22.381 1.00 99.90 O ATOM 504 NE2 GLN 66 22.401 61.712 23.497 1.00 99.90 N ATOM 505 N GLU 67 26.075 63.231 19.050 1.00 99.90 N ATOM 506 CA GLU 67 27.087 62.536 18.322 1.00 99.90 C ATOM 507 C GLU 67 27.908 61.816 19.331 1.00 99.90 C ATOM 508 O GLU 67 28.110 62.292 20.447 1.00 99.90 O ATOM 509 CB GLU 67 28.024 63.457 17.517 1.00 99.90 C ATOM 510 CG GLU 67 27.317 64.222 16.394 1.00 99.90 C ATOM 511 CD GLU 67 26.916 63.224 15.316 1.00 99.90 C ATOM 512 OE1 GLU 67 26.272 63.652 14.321 1.00 99.90 O ATOM 513 OE2 GLU 67 27.249 62.018 15.473 1.00 99.90 O ATOM 514 N VAL 68 28.389 60.622 18.950 1.00 99.90 N ATOM 515 CA VAL 68 29.243 59.868 19.818 1.00 99.90 C ATOM 516 C VAL 68 30.600 60.487 19.668 1.00 99.90 C ATOM 517 O VAL 68 31.366 60.589 20.628 1.00 99.90 O ATOM 518 CB VAL 68 29.283 58.402 19.432 1.00 99.90 C ATOM 519 CG1 VAL 68 30.000 57.571 20.514 1.00 99.90 C ATOM 520 CG2 VAL 68 27.834 57.920 19.225 1.00 99.90 C ATOM 521 N GLY 69 30.886 60.964 18.435 1.00 99.90 N ATOM 522 CA GLY 69 32.222 61.067 17.909 1.00 99.90 C ATOM 523 C GLY 69 33.034 62.089 18.647 1.00 99.90 C ATOM 524 O GLY 69 34.165 61.791 19.023 1.00 99.90 O ATOM 525 N PRO 70 32.539 63.279 18.872 1.00 99.90 N ATOM 526 CA PRO 70 33.177 64.048 19.905 1.00 99.90 C ATOM 527 C PRO 70 32.492 63.820 21.214 1.00 99.90 C ATOM 528 O PRO 70 31.264 63.764 21.242 1.00 99.90 O ATOM 529 CB PRO 70 33.130 65.521 19.499 1.00 99.90 C ATOM 530 CG PRO 70 32.553 65.557 18.072 1.00 99.90 C ATOM 531 CD PRO 70 32.202 64.103 17.719 1.00 99.90 C ATOM 532 N PRO 71 33.240 63.696 22.277 1.00 99.90 N ATOM 533 CA PRO 71 32.649 63.867 23.572 1.00 99.90 C ATOM 534 C PRO 71 32.939 65.263 24.011 1.00 99.90 C ATOM 535 O PRO 71 32.526 65.630 25.110 1.00 99.90 O ATOM 536 CB PRO 71 33.298 62.851 24.513 1.00 99.90 C ATOM 537 CG PRO 71 34.382 62.125 23.696 1.00 99.90 C ATOM 538 CD PRO 71 34.313 62.719 22.282 1.00 99.90 C ATOM 539 N ASP 72 33.659 66.040 23.175 1.00 99.90 N ATOM 540 CA ASP 72 34.170 67.315 23.585 1.00 99.90 C ATOM 541 C ASP 72 33.008 68.243 23.714 1.00 99.90 C ATOM 542 O ASP 72 32.670 68.673 24.816 1.00 99.90 O ATOM 543 CB ASP 72 35.157 67.916 22.566 1.00 99.90 C ATOM 544 CG ASP 72 35.822 69.126 23.203 1.00 99.90 C ATOM 545 OD1 ASP 72 36.931 68.947 23.773 1.00 99.90 O ATOM 546 OD2 ASP 72 35.238 70.241 23.129 1.00 99.90 O ATOM 547 N CYS 73 32.349 68.564 22.584 1.00 99.90 N ATOM 548 CA CYS 73 31.144 69.323 22.679 1.00 99.90 C ATOM 549 C CYS 73 30.059 68.520 22.044 1.00 99.90 C ATOM 550 O CYS 73 30.255 67.908 20.995 1.00 99.90 O ATOM 551 CB CYS 73 31.212 70.671 21.944 1.00 99.90 C ATOM 552 SG CYS 73 29.810 71.753 22.352 1.00 99.90 S ATOM 553 N ARG 74 28.872 68.501 22.680 1.00 99.90 N ATOM 554 CA ARG 74 27.706 68.033 21.996 1.00 99.90 C ATOM 555 C ARG 74 26.809 69.214 21.830 1.00 99.90 C ATOM 556 O ARG 74 26.684 70.043 22.730 1.00 99.90 O ATOM 557 CB ARG 74 26.924 66.959 22.775 1.00 99.90 C ATOM 558 CG ARG 74 27.410 65.531 22.511 1.00 99.90 C ATOM 559 CD ARG 74 28.473 65.044 23.498 1.00 99.90 C ATOM 560 NE ARG 74 27.773 64.630 24.751 1.00 99.90 N ATOM 561 CZ ARG 74 27.283 63.365 24.955 1.00 99.90 C ATOM 562 NH1 ARG 74 27.375 62.343 24.047 1.00 99.90 H ATOM 563 NH2 ARG 74 26.663 63.106 26.143 1.00 99.90 H ATOM 564 N CYS 75 26.177 69.333 20.647 1.00 99.90 N ATOM 565 CA CYS 75 25.506 70.556 20.323 1.00 99.90 C ATOM 566 C CYS 75 24.087 70.221 20.007 1.00 99.90 C ATOM 567 O CYS 75 23.431 70.915 19.232 1.00 99.90 O ATOM 568 CB CYS 75 26.096 71.251 19.088 1.00 99.90 C ATOM 569 SG CYS 75 27.726 71.982 19.424 1.00 99.90 S ATOM 570 N ASP 76 23.577 69.135 20.611 1.00 99.90 N ATOM 571 CA ASP 76 22.245 68.703 20.318 1.00 99.90 C ATOM 572 C ASP 76 21.318 69.442 21.233 1.00 99.90 C ATOM 573 O ASP 76 21.740 70.352 21.945 1.00 99.90 O ATOM 574 CB ASP 76 22.054 67.174 20.462 1.00 99.90 C ATOM 575 CG ASP 76 22.402 66.663 21.859 1.00 99.90 C ATOM 576 OD1 ASP 76 23.555 66.849 22.334 1.00 99.90 O ATOM 577 OD2 ASP 76 21.499 66.032 22.463 1.00 99.90 O ATOM 578 N ASN 77 20.013 69.103 21.214 1.00 99.90 N ATOM 579 CA ASN 77 19.074 69.843 22.003 1.00 99.90 C ATOM 580 C ASN 77 19.082 69.248 23.373 1.00 99.90 C ATOM 581 O ASN 77 18.965 69.951 24.375 1.00 99.90 O ATOM 582 CB ASN 77 17.639 69.753 21.454 1.00 99.90 C ATOM 583 CG ASN 77 17.631 70.345 20.050 1.00 99.90 C ATOM 584 OD1 ASN 77 18.552 71.061 19.660 1.00 99.90 O ATOM 585 ND2 ASN 77 16.561 70.044 19.266 1.00 99.90 N ATOM 586 N LEU 78 19.229 67.912 23.436 1.00 99.90 N ATOM 587 CA LEU 78 19.168 67.194 24.675 1.00 99.90 C ATOM 588 C LEU 78 20.548 67.240 25.256 1.00 99.90 C ATOM 589 O LEU 78 21.279 66.253 25.235 1.00 99.90 O ATOM 590 CB LEU 78 18.758 65.721 24.433 1.00 99.90 C ATOM 591 CG LEU 78 18.619 64.801 25.661 1.00 99.90 C ATOM 592 CD1 LEU 78 17.144 64.492 25.943 1.00 99.90 C ATOM 593 CD2 LEU 78 19.425 63.502 25.482 1.00 99.90 C ATOM 594 N CYS 79 20.964 68.415 25.770 1.00 99.90 N ATOM 595 CA CYS 79 22.366 68.583 26.010 1.00 99.90 C ATOM 596 C CYS 79 22.558 69.562 27.118 1.00 99.90 C ATOM 597 O CYS 79 23.594 69.550 27.779 1.00 99.90 O ATOM 598 CB CYS 79 23.125 69.151 24.803 1.00 99.90 C ATOM 599 SG CYS 79 22.652 70.868 24.434 1.00 99.90 S ATOM 600 N LYS 80 21.582 70.463 27.335 1.00 99.90 N ATOM 601 CA LYS 80 21.943 71.704 27.950 1.00 99.90 C ATOM 602 C LYS 80 22.015 71.507 29.433 1.00 99.90 C ATOM 603 O LYS 80 22.674 72.272 30.134 1.00 99.90 O ATOM 604 CB LYS 80 20.998 72.874 27.571 1.00 99.90 C ATOM 605 CG LYS 80 19.839 73.205 28.518 1.00 99.90 C ATOM 606 CD LYS 80 19.609 74.710 28.655 1.00 99.90 C ATOM 607 CE LYS 80 20.600 75.530 27.826 1.00 99.90 C ATOM 608 NZ LYS 80 21.006 76.748 28.561 1.00 99.90 N ATOM 609 N SER 81 21.372 70.442 29.953 1.00 99.90 N ATOM 610 CA SER 81 21.315 70.284 31.375 1.00 99.90 C ATOM 611 C SER 81 22.415 69.360 31.773 1.00 99.90 C ATOM 612 O SER 81 22.798 69.303 32.940 1.00 99.90 O ATOM 613 CB SER 81 19.988 69.688 31.874 1.00 99.90 C ATOM 614 OG SER 81 20.021 68.268 31.858 1.00 99.90 O ATOM 615 N TYR 82 22.997 68.644 30.787 1.00 99.90 N ATOM 616 CA TYR 82 24.195 67.885 31.028 1.00 99.90 C ATOM 617 C TYR 82 25.308 68.850 31.314 1.00 99.90 C ATOM 618 O TYR 82 26.228 68.512 32.057 1.00 99.90 O ATOM 619 CB TYR 82 24.692 67.070 29.817 1.00 99.90 C ATOM 620 CG TYR 82 23.890 65.843 29.559 1.00 99.90 C ATOM 621 CD1 TYR 82 22.555 65.912 29.235 1.00 99.90 C ATOM 622 CD2 TYR 82 24.500 64.611 29.617 1.00 99.90 C ATOM 623 CE1 TYR 82 21.841 64.764 28.986 1.00 99.90 C ATOM 624 CE2 TYR 82 23.792 63.461 29.370 1.00 99.90 C ATOM 625 CZ TYR 82 22.459 63.538 29.052 1.00 99.90 C ATOM 626 OH TYR 82 21.725 62.361 28.798 1.00 99.90 H ATOM 627 N SER 83 25.219 70.066 30.716 1.00 99.90 N ATOM 628 CA SER 83 26.324 70.937 30.414 1.00 99.90 C ATOM 629 C SER 83 27.438 70.138 29.830 1.00 99.90 C ATOM 630 O SER 83 28.583 70.215 30.273 1.00 99.90 O ATOM 631 CB SER 83 26.843 71.796 31.593 1.00 99.90 C ATOM 632 OG SER 83 25.789 72.057 32.509 1.00 99.90 O ATOM 633 N SER 84 27.107 69.355 28.787 1.00 99.90 N ATOM 634 CA SER 84 28.092 68.904 27.856 1.00 99.90 C ATOM 635 C SER 84 28.063 69.846 26.696 1.00 99.90 C ATOM 636 O SER 84 28.917 69.772 25.815 1.00 99.90 O ATOM 637 CB SER 84 27.782 67.507 27.296 1.00 99.90 C ATOM 638 OG SER 84 26.526 67.521 26.635 1.00 99.90 O ATOM 639 N CYS 85 27.071 70.764 26.664 1.00 99.90 N ATOM 640 CA CYS 85 26.869 71.572 25.500 1.00 99.90 C ATOM 641 C CYS 85 27.950 72.599 25.461 1.00 99.90 C ATOM 642 O CYS 85 28.698 72.776 26.420 1.00 99.90 O ATOM 643 CB CYS 85 25.523 72.318 25.494 1.00 99.90 C ATOM 644 SG CYS 85 24.102 71.208 25.741 1.00 99.90 S ATOM 645 N CYS 86 28.071 73.295 24.316 1.00 99.90 N ATOM 646 CA CYS 86 29.212 74.132 24.122 1.00 99.90 C ATOM 647 C CYS 86 28.869 75.487 24.635 1.00 99.90 C ATOM 648 O CYS 86 27.749 75.737 25.075 1.00 99.90 O ATOM 649 CB CYS 86 29.619 74.285 22.648 1.00 99.90 C ATOM 650 SG CYS 86 30.083 72.699 21.891 1.00 99.90 S ATOM 651 N HIS 87 29.856 76.401 24.592 1.00 99.90 N ATOM 652 CA HIS 87 29.600 77.771 24.909 1.00 99.90 C ATOM 653 C HIS 87 29.038 78.392 23.676 1.00 99.90 C ATOM 654 O HIS 87 28.282 79.359 23.738 1.00 99.90 O ATOM 655 CB HIS 87 30.880 78.539 25.276 1.00 99.90 C ATOM 656 CG HIS 87 31.630 77.912 26.413 1.00 99.90 C ATOM 657 ND1 HIS 87 32.522 76.871 26.269 1.00 99.90 N ATOM 658 CD2 HIS 87 31.605 78.196 27.744 1.00 99.90 C ATOM 659 CE1 HIS 87 32.988 76.581 27.510 1.00 99.90 C ATOM 660 NE2 HIS 87 32.461 77.359 28.438 1.00 99.90 N ATOM 661 N ASP 88 29.395 77.824 22.510 1.00 99.90 N ATOM 662 CA ASP 88 29.017 78.409 21.258 1.00 99.90 C ATOM 663 C ASP 88 27.600 78.027 20.978 1.00 99.90 C ATOM 664 O ASP 88 26.959 78.621 20.113 1.00 99.90 O ATOM 665 CB ASP 88 29.868 77.899 20.083 1.00 99.90 C ATOM 666 CG ASP 88 31.273 78.461 20.242 1.00 99.90 C ATOM 667 OD1 ASP 88 31.479 79.285 21.172 1.00 99.90 O ATOM 668 OD2 ASP 88 32.161 78.075 19.435 1.00 99.90 O ATOM 669 N PHE 89 27.080 77.019 21.705 1.00 99.90 N ATOM 670 CA PHE 89 25.840 76.402 21.333 1.00 99.90 C ATOM 671 C PHE 89 24.728 77.340 21.669 1.00 99.90 C ATOM 672 O PHE 89 23.690 77.339 21.012 1.00 99.90 O ATOM 673 CB PHE 89 25.578 75.085 22.084 1.00 99.90 C ATOM 674 CG PHE 89 24.133 74.754 21.928 1.00 99.90 C ATOM 675 CD1 PHE 89 23.693 74.017 20.852 1.00 99.90 C ATOM 676 CD2 PHE 89 23.216 75.179 22.861 1.00 99.90 C ATOM 677 CE1 PHE 89 22.360 73.711 20.709 1.00 99.90 C ATOM 678 CE2 PHE 89 21.881 74.877 22.723 1.00 99.90 C ATOM 679 CZ PHE 89 21.451 74.142 21.645 1.00 99.90 C ATOM 680 N ASP 90 24.919 78.178 22.704 1.00 99.90 N ATOM 681 CA ASP 90 23.853 79.032 23.134 1.00 99.90 C ATOM 682 C ASP 90 23.710 80.132 22.134 1.00 99.90 C ATOM 683 O ASP 90 22.605 80.617 21.893 1.00 99.90 O ATOM 684 CB ASP 90 24.116 79.680 24.502 1.00 99.90 C ATOM 685 CG ASP 90 23.776 78.653 25.571 1.00 99.90 C ATOM 686 OD1 ASP 90 23.324 77.539 25.193 1.00 99.90 O ATOM 687 OD2 ASP 90 23.961 78.967 26.778 1.00 99.90 O ATOM 688 N GLU 91 24.835 80.547 21.521 1.00 99.90 N ATOM 689 CA GLU 91 24.814 81.665 20.626 1.00 99.90 C ATOM 690 C GLU 91 24.126 81.234 19.374 1.00 99.90 C ATOM 691 O GLU 91 23.115 81.812 18.980 1.00 99.90 O ATOM 692 CB GLU 91 26.220 82.139 20.219 1.00 99.90 C ATOM 693 CG GLU 91 26.980 82.841 21.344 1.00 99.90 C ATOM 694 CD GLU 91 28.395 83.115 20.854 1.00 99.90 C ATOM 695 OE1 GLU 91 28.692 82.770 19.679 1.00 99.90 O ATOM 696 OE2 GLU 91 29.198 83.674 21.649 1.00 99.90 O ATOM 697 N LEU 92 24.677 80.195 18.718 1.00 99.90 N ATOM 698 CA LEU 92 24.316 79.909 17.363 1.00 99.90 C ATOM 699 C LEU 92 22.968 79.270 17.378 1.00 99.90 C ATOM 700 O LEU 92 22.060 79.710 16.675 1.00 99.90 O ATOM 701 CB LEU 92 25.286 78.936 16.676 1.00 99.90 C ATOM 702 CG LEU 92 26.518 79.615 16.043 1.00 99.90 C ATOM 703 CD1 LEU 92 26.129 80.921 15.330 1.00 99.90 C ATOM 704 CD2 LEU 92 27.651 79.805 17.064 1.00 99.90 C ATOM 705 N CYS 93 22.792 78.217 18.199 1.00 99.90 N ATOM 706 CA CYS 93 21.493 77.620 18.307 1.00 99.90 C ATOM 707 C CYS 93 20.749 78.348 19.376 1.00 99.90 C ATOM 708 O CYS 93 20.448 77.793 20.432 1.00 99.90 O ATOM 709 CB CYS 93 21.521 76.132 18.698 1.00 99.90 C ATOM 710 SG CYS 93 22.458 75.120 17.514 1.00 99.90 S ATOM 711 N LEU 94 20.433 79.628 19.113 1.00 99.90 N ATOM 712 CA LEU 94 19.570 80.373 19.976 1.00 99.90 C ATOM 713 C LEU 94 18.203 79.826 19.759 1.00 99.90 C ATOM 714 O LEU 94 17.380 79.775 20.671 1.00 99.90 O ATOM 715 CB LEU 94 19.544 81.864 19.602 1.00 99.90 C ATOM 716 CG LEU 94 19.100 82.806 20.734 1.00 99.90 C ATOM 717 CD1 LEU 94 19.775 82.448 22.068 1.00 99.90 C ATOM 718 CD2 LEU 94 19.307 84.275 20.332 1.00 99.90 C ATOM 719 N LYS 95 17.941 79.391 18.514 1.00 99.90 N ATOM 720 CA LYS 95 16.597 79.175 18.079 1.00 99.90 C ATOM 721 C LYS 95 16.113 77.897 18.680 1.00 99.90 C ATOM 722 O LYS 95 15.004 77.841 19.211 1.00 99.90 O ATOM 723 CB LYS 95 16.487 79.040 16.552 1.00 99.90 C ATOM 724 CG LYS 95 15.051 79.108 16.029 1.00 99.90 C ATOM 725 CD LYS 95 14.965 79.509 14.555 1.00 99.90 C ATOM 726 CE LYS 95 13.624 79.172 13.900 1.00 99.90 C ATOM 727 NZ LYS 95 13.664 79.526 12.464 1.00 99.90 N TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 62.66 61.5 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 63.03 60.7 56 100.0 56 ARMSMC BURIED . . . . . . . . 61.73 63.6 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 70.98 61.1 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 71.98 60.0 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 76.04 52.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 57.85 81.8 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 88.38 43.5 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 71.17 58.8 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 97.79 38.9 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 38.79 60.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.38 44.4 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 61.50 50.0 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 89.72 42.9 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 29.93 50.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 89.17 0.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 89.17 0.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 89.49 0.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 87.87 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.99 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.99 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.0497 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 2.18 29 100.0 29 CRMSCA BURIED . . . . . . . . 1.38 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.12 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 2.29 142 100.0 142 CRMSMC BURIED . . . . . . . . 1.60 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 4.30 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 3.87 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 4.81 103 100.0 103 CRMSSC BURIED . . . . . . . . 2.58 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.26 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 3.62 219 100.0 219 CRMSALL BURIED . . . . . . . . 2.06 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 98.426 0.971 0.972 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 98.252 0.968 0.969 29 100.0 29 ERRCA BURIED . . . . . . . . 98.885 0.980 0.980 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 98.316 0.969 0.970 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 98.158 0.966 0.967 142 100.0 142 ERRMC BURIED . . . . . . . . 98.724 0.977 0.977 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 96.722 0.940 0.943 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 97.106 0.947 0.949 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 96.204 0.930 0.934 103 100.0 103 ERRSC BURIED . . . . . . . . 98.058 0.964 0.966 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 97.625 0.956 0.958 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 97.315 0.951 0.953 219 100.0 219 ERRALL BURIED . . . . . . . . 98.433 0.971 0.972 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 21 31 34 39 40 40 40 DISTCA CA (P) 52.50 77.50 85.00 97.50 100.00 40 DISTCA CA (RMS) 0.60 0.97 1.18 1.82 1.99 DISTCA ALL (N) 117 195 231 266 298 303 303 DISTALL ALL (P) 38.61 64.36 76.24 87.79 98.35 303 DISTALL ALL (RMS) 0.67 1.05 1.38 1.89 2.96 DISTALL END of the results output