####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS435_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS435_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 73 - 88 4.98 13.28 LCS_AVERAGE: 36.31 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 86 - 94 1.96 13.45 LONGEST_CONTINUOUS_SEGMENT: 9 87 - 95 1.79 13.66 LCS_AVERAGE: 16.50 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 88 - 93 0.92 13.78 LCS_AVERAGE: 10.12 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 0 3 11 0 0 3 4 4 4 4 5 8 12 12 14 15 15 16 19 19 22 25 25 LCS_GDT S 57 S 57 3 4 11 3 3 3 4 5 5 6 6 10 12 12 14 15 15 16 18 20 21 22 23 LCS_GDT C 58 C 58 3 4 11 3 3 3 4 6 7 8 10 11 12 12 14 15 15 16 19 20 21 23 25 LCS_GDT K 59 K 59 3 5 13 3 3 3 4 5 5 6 7 10 12 12 14 15 15 16 19 20 21 23 25 LCS_GDT G 60 G 60 4 5 13 3 4 4 4 5 5 6 7 8 11 12 15 17 18 19 20 22 23 25 25 LCS_GDT R 61 R 61 4 5 13 3 4 4 4 5 6 6 8 12 15 15 16 17 18 19 20 22 23 25 25 LCS_GDT C 62 C 62 5 5 13 3 4 5 5 6 8 9 10 12 15 15 16 17 18 19 20 22 23 25 25 LCS_GDT F 63 F 63 5 5 13 3 4 5 5 5 7 8 10 12 13 14 15 17 18 19 20 22 23 25 25 LCS_GDT E 64 E 64 5 5 13 3 4 5 5 5 7 7 8 10 11 13 15 17 18 19 20 22 23 25 25 LCS_GDT L 65 L 65 5 5 13 3 4 5 5 5 5 6 8 9 11 12 14 15 18 18 20 22 23 25 25 LCS_GDT Q 66 Q 66 5 5 13 3 4 5 5 5 5 7 8 9 11 12 13 15 16 17 20 22 23 24 25 LCS_GDT E 67 E 67 3 5 13 3 3 3 4 5 5 7 8 9 11 12 13 15 18 18 20 22 23 24 25 LCS_GDT V 68 V 68 3 5 13 3 3 3 4 5 5 7 8 9 11 12 13 15 17 18 20 22 23 24 25 LCS_GDT G 69 G 69 3 5 13 0 3 3 4 5 5 6 8 9 11 12 13 15 15 16 18 21 21 23 23 LCS_GDT P 70 P 70 3 5 14 1 3 3 4 5 6 7 8 10 12 12 13 15 15 16 18 20 21 23 25 LCS_GDT P 71 P 71 3 8 15 3 3 5 7 7 7 8 10 11 12 12 13 14 15 16 18 20 20 22 22 LCS_GDT D 72 D 72 3 8 15 3 4 5 7 7 7 8 11 12 12 12 13 15 18 19 20 22 23 25 25 LCS_GDT C 73 C 73 4 8 16 3 4 6 7 8 10 11 11 12 15 15 16 17 18 19 20 22 23 25 25 LCS_GDT R 74 R 74 4 8 16 3 3 5 7 7 8 9 10 12 15 15 16 17 18 19 20 20 23 25 25 LCS_GDT C 75 C 75 4 8 16 3 3 5 7 7 7 8 10 12 15 15 16 17 17 18 19 20 22 25 25 LCS_GDT D 76 D 76 4 8 16 3 4 5 7 7 7 8 10 12 15 15 16 17 17 18 19 20 21 22 25 LCS_GDT N 77 N 77 4 8 16 3 4 5 7 7 7 8 9 12 15 15 16 17 17 18 19 20 21 22 23 LCS_GDT L 78 L 78 4 8 16 3 3 4 4 6 7 7 9 11 15 15 16 17 17 18 19 20 21 22 23 LCS_GDT C 79 C 79 3 5 16 3 3 3 4 4 5 6 6 6 9 12 14 15 15 16 19 19 20 21 22 LCS_GDT K 80 K 80 3 5 16 3 3 3 4 4 5 8 10 11 12 14 16 17 17 18 19 20 21 22 23 LCS_GDT S 81 S 81 4 5 16 1 3 4 5 6 8 9 10 12 15 15 16 17 17 18 19 20 21 22 23 LCS_GDT Y 82 Y 82 4 6 16 1 3 4 6 6 8 9 10 12 15 15 16 17 17 18 19 20 22 25 25 LCS_GDT S 83 S 83 4 6 16 3 3 4 5 5 8 9 10 12 15 15 16 17 17 18 19 20 22 25 25 LCS_GDT S 84 S 84 4 6 16 3 4 4 6 6 8 9 10 12 15 15 16 17 18 19 20 20 23 25 25 LCS_GDT C 85 C 85 4 6 16 3 4 4 6 6 8 9 10 12 15 15 16 17 18 19 20 22 23 25 25 LCS_GDT C 86 C 86 4 9 16 3 4 4 6 8 10 11 11 12 15 15 16 17 18 19 20 22 23 25 25 LCS_GDT H 87 H 87 4 9 16 3 5 6 7 8 10 11 11 12 15 15 16 17 18 19 20 22 23 25 25 LCS_GDT D 88 D 88 6 9 16 4 5 6 7 8 10 11 11 12 13 14 15 17 18 19 20 22 22 25 25 LCS_GDT F 89 F 89 6 9 15 4 5 6 7 8 10 11 11 12 13 14 15 17 18 19 20 22 23 25 25 LCS_GDT D 90 D 90 6 9 15 4 5 6 7 8 10 11 11 12 13 14 15 17 18 19 20 22 23 25 25 LCS_GDT E 91 E 91 6 9 15 4 5 6 7 8 10 11 11 12 13 14 15 17 18 19 20 22 23 25 25 LCS_GDT L 92 L 92 6 9 15 4 5 6 7 8 10 11 11 12 13 14 15 17 18 19 20 22 23 25 25 LCS_GDT C 93 C 93 6 9 15 4 5 6 7 8 10 11 11 12 12 14 15 17 18 19 20 22 23 25 25 LCS_GDT L 94 L 94 5 9 15 3 4 5 7 8 9 11 11 12 12 13 14 17 18 19 20 22 23 25 25 LCS_GDT K 95 K 95 3 9 15 3 4 5 5 5 10 11 11 12 12 13 15 17 18 19 20 22 23 25 25 LCS_AVERAGE LCS_A: 20.98 ( 10.12 16.50 36.31 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 6 7 8 10 11 11 12 15 15 16 17 18 19 20 22 23 25 25 GDT PERCENT_AT 10.00 12.50 15.00 17.50 20.00 25.00 27.50 27.50 30.00 37.50 37.50 40.00 42.50 45.00 47.50 50.00 55.00 57.50 62.50 62.50 GDT RMS_LOCAL 0.33 0.61 0.85 1.19 1.51 1.94 2.16 2.16 2.47 3.87 3.87 4.11 4.37 4.78 4.97 5.21 5.93 6.39 6.73 6.73 GDT RMS_ALL_AT 13.53 13.32 13.34 13.53 14.05 13.44 13.74 13.74 13.67 13.24 13.24 13.43 13.53 11.43 11.50 11.49 13.35 12.44 11.06 11.06 # Checking swapping # possible swapping detected: F 63 F 63 # possible swapping detected: E 64 E 64 # possible swapping detected: D 90 D 90 # possible swapping detected: E 91 E 91 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 16.424 0 0.356 0.356 19.040 0.000 0.000 LGA S 57 S 57 20.514 0 0.557 0.515 24.169 0.000 0.000 LGA C 58 C 58 16.832 0 0.169 0.857 18.381 0.000 0.000 LGA K 59 K 59 18.496 0 0.417 0.933 26.699 0.000 0.000 LGA G 60 G 60 15.133 0 0.561 0.561 16.699 0.000 0.000 LGA R 61 R 61 12.862 0 0.662 1.159 13.651 0.000 0.000 LGA C 62 C 62 10.865 0 0.073 0.132 12.560 0.000 0.000 LGA F 63 F 63 11.943 0 0.515 0.436 17.077 0.000 0.000 LGA E 64 E 64 13.160 0 0.066 1.350 14.522 0.000 0.265 LGA L 65 L 65 18.268 0 0.621 1.365 22.518 0.000 0.000 LGA Q 66 Q 66 20.253 0 0.620 0.882 23.366 0.000 0.000 LGA E 67 E 67 20.469 0 0.554 0.825 22.191 0.000 0.000 LGA V 68 V 68 18.174 0 0.557 0.611 18.379 0.000 0.000 LGA G 69 G 69 17.092 0 0.524 0.524 17.671 0.000 0.000 LGA P 70 P 70 14.070 0 0.053 0.099 16.882 0.000 0.000 LGA P 71 P 71 10.312 0 0.630 0.636 14.334 5.119 2.925 LGA D 72 D 72 5.251 3 0.143 0.207 7.140 35.833 19.583 LGA C 73 C 73 2.130 0 0.092 0.770 4.239 61.190 54.206 LGA R 74 R 74 6.632 0 0.139 1.100 14.477 12.262 5.801 LGA C 75 C 75 12.974 0 0.622 0.972 16.359 0.000 0.000 LGA D 76 D 76 16.683 0 0.121 1.115 18.191 0.000 0.000 LGA N 77 N 77 21.825 0 0.667 0.982 25.490 0.000 0.000 LGA L 78 L 78 20.201 0 0.669 0.578 20.836 0.000 0.000 LGA C 79 C 79 20.356 0 0.406 0.458 24.819 0.000 0.000 LGA K 80 K 80 21.895 0 0.612 1.332 28.723 0.000 0.000 LGA S 81 S 81 20.113 0 0.611 0.963 23.287 0.000 0.000 LGA Y 82 Y 82 13.430 0 0.681 1.183 15.708 0.000 0.000 LGA S 83 S 83 14.595 0 0.477 0.527 18.366 0.000 0.000 LGA S 84 S 84 10.462 0 0.702 0.872 12.700 3.214 2.143 LGA C 85 C 85 7.552 0 0.157 0.538 10.299 9.762 7.302 LGA C 86 C 86 3.079 0 0.113 0.740 4.465 45.357 51.905 LGA H 87 H 87 1.002 0 0.629 1.122 6.014 77.619 57.095 LGA D 88 D 88 2.541 0 0.244 0.690 3.594 62.857 55.595 LGA F 89 F 89 2.008 0 0.085 0.229 2.258 73.095 74.545 LGA D 90 D 90 0.767 0 0.019 0.429 3.672 90.595 76.012 LGA E 91 E 91 0.573 0 0.169 1.070 3.631 90.595 77.619 LGA L 92 L 92 1.704 0 0.157 1.081 6.161 79.286 60.595 LGA C 93 C 93 1.438 0 0.249 0.860 5.878 79.286 65.952 LGA L 94 L 94 3.316 0 0.406 1.430 9.907 50.833 29.107 LGA K 95 K 95 3.023 0 0.394 1.376 10.341 50.357 30.423 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 10.988 10.899 11.560 20.682 16.777 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 11 2.16 26.875 25.211 0.486 LGA_LOCAL RMSD: 2.165 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 13.735 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 10.988 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.515092 * X + -0.681269 * Y + -0.520148 * Z + 62.089767 Y_new = 0.623641 * X + -0.118425 * Y + 0.772688 * Z + 20.357828 Z_new = -0.588006 * X + -0.722391 * Y + 0.363868 * Z + -0.593841 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.880436 0.628592 -1.104194 [DEG: 50.4453 36.0157 -63.2656 ] ZXZ: -2.549104 1.198379 -2.458390 [DEG: -146.0529 68.6621 -140.8554 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS435_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS435_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 11 2.16 25.211 10.99 REMARK ---------------------------------------------------------- MOLECULE T0543TS435_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT N/A ATOM 422 N GLY 56 29.561 57.038 23.046 1.00 79.36 N ATOM 423 CA GLY 56 29.760 57.248 21.653 1.00 79.36 C ATOM 424 C GLY 56 30.159 56.060 20.838 1.00 79.36 C ATOM 425 O GLY 56 31.330 55.694 20.758 1.00 79.36 O ATOM 426 N SER 57 29.151 55.373 20.261 1.00 72.48 N ATOM 427 CA SER 57 29.464 54.486 19.180 1.00 72.48 C ATOM 428 C SER 57 29.734 55.404 18.056 1.00 72.48 C ATOM 429 O SER 57 30.711 55.284 17.317 1.00 72.48 O ATOM 430 CB SER 57 28.299 53.651 18.674 1.00 72.48 C ATOM 431 OG SER 57 28.806 52.818 17.650 1.00 72.48 O ATOM 432 N CYS 58 28.813 56.383 17.933 1.00124.24 N ATOM 433 CA CYS 58 28.927 57.453 16.995 1.00124.24 C ATOM 434 C CYS 58 30.032 58.271 17.561 1.00124.24 C ATOM 435 O CYS 58 30.650 59.093 16.889 1.00124.24 O ATOM 436 CB CYS 58 27.658 58.308 16.790 1.00124.24 C ATOM 437 SG CYS 58 27.452 59.692 17.938 1.00124.24 S ATOM 438 N LYS 59 30.297 58.024 18.857 1.00179.73 N ATOM 439 CA LYS 59 31.313 58.673 19.614 1.00179.73 C ATOM 440 C LYS 59 30.932 60.084 19.679 1.00179.73 C ATOM 441 O LYS 59 31.765 60.983 19.599 1.00179.73 O ATOM 442 CB LYS 59 32.727 58.571 19.029 1.00179.73 C ATOM 443 CG LYS 59 33.429 57.273 19.417 1.00179.73 C ATOM 444 CD LYS 59 33.670 57.112 20.920 1.00179.73 C ATOM 445 CE LYS 59 35.059 57.550 21.383 1.00179.73 C ATOM 446 NZ LYS 59 35.220 57.258 22.825 1.00179.73 N ATOM 447 N GLY 60 29.619 60.292 19.837 1.00 40.76 N ATOM 448 CA GLY 60 29.153 61.628 19.920 1.00 40.76 C ATOM 449 C GLY 60 28.406 61.763 21.197 1.00 40.76 C ATOM 450 O GLY 60 27.398 61.097 21.429 1.00 40.76 O ATOM 451 N ARG 61 28.909 62.652 22.066 1.00 78.29 N ATOM 452 CA ARG 61 28.221 62.939 23.280 1.00 78.29 C ATOM 453 C ARG 61 27.933 64.398 23.206 1.00 78.29 C ATOM 454 O ARG 61 28.771 65.182 22.763 1.00 78.29 O ATOM 455 CB ARG 61 29.053 62.660 24.551 1.00 78.29 C ATOM 456 CG ARG 61 30.366 63.447 24.657 1.00 78.29 C ATOM 457 CD ARG 61 30.197 64.909 25.082 1.00 78.29 C ATOM 458 NE ARG 61 31.551 65.532 25.138 1.00 78.29 N ATOM 459 CZ ARG 61 32.237 65.583 26.317 1.00 78.29 C ATOM 460 NH1 ARG 61 31.685 65.058 27.449 1.00 78.29 H ATOM 461 NH2 ARG 61 33.471 66.166 26.364 1.00 78.29 H ATOM 462 N CYS 62 26.706 64.800 23.575 1.00 40.65 N ATOM 463 CA CYS 62 26.411 66.199 23.548 1.00 40.65 C ATOM 464 C CYS 62 25.943 66.550 24.919 1.00 40.65 C ATOM 465 O CYS 62 24.884 66.101 25.355 1.00 40.65 O ATOM 466 CB CYS 62 25.279 66.572 22.574 1.00 40.65 C ATOM 467 SG CYS 62 25.703 66.229 20.839 1.00 40.65 S ATOM 468 N PHE 63 26.734 67.359 25.647 1.00 65.63 N ATOM 469 CA PHE 63 26.333 67.730 26.970 1.00 65.63 C ATOM 470 C PHE 63 26.168 69.210 26.978 1.00 65.63 C ATOM 471 O PHE 63 27.082 69.952 26.626 1.00 65.63 O ATOM 472 CB PHE 63 27.394 67.383 28.034 1.00 65.63 C ATOM 473 CG PHE 63 27.500 65.897 28.142 1.00 65.63 C ATOM 474 CD1 PHE 63 28.125 65.154 27.168 1.00 65.63 C ATOM 475 CD2 PHE 63 26.998 65.238 29.239 1.00 65.63 C ATOM 476 CE1 PHE 63 28.223 63.786 27.281 1.00 65.63 C ATOM 477 CE2 PHE 63 27.091 63.872 29.361 1.00 65.63 C ATOM 478 CZ PHE 63 27.704 63.139 28.376 1.00 65.63 C ATOM 479 N GLU 64 24.979 69.684 27.383 1.00 87.85 N ATOM 480 CA GLU 64 24.781 71.097 27.440 1.00 87.85 C ATOM 481 C GLU 64 25.060 71.435 28.857 1.00 87.85 C ATOM 482 O GLU 64 24.673 70.684 29.745 1.00 87.85 O ATOM 483 CB GLU 64 23.327 71.521 27.170 1.00 87.85 C ATOM 484 CG GLU 64 22.803 71.084 25.801 1.00 87.85 C ATOM 485 CD GLU 64 23.653 71.747 24.730 1.00 87.85 C ATOM 486 OE1 GLU 64 24.517 72.588 25.096 1.00 87.85 O ATOM 487 OE2 GLU 64 23.452 71.415 23.531 1.00 87.85 O ATOM 488 N LEU 65 25.812 72.522 29.102 1.00105.26 N ATOM 489 CA LEU 65 26.024 72.964 30.447 1.00105.26 C ATOM 490 C LEU 65 25.644 74.397 30.403 1.00105.26 C ATOM 491 O LEU 65 26.397 75.224 29.902 1.00105.26 O ATOM 492 CB LEU 65 27.496 72.915 30.890 1.00105.26 C ATOM 493 CG LEU 65 28.102 71.500 30.873 1.00105.26 C ATOM 494 CD1 LEU 65 27.394 70.577 31.877 1.00105.26 C ATOM 495 CD2 LEU 65 28.141 70.925 29.448 1.00105.26 C ATOM 496 N GLN 66 24.442 74.733 30.883 1.00166.91 N ATOM 497 CA GLN 66 24.047 76.102 30.794 1.00166.91 C ATOM 498 C GLN 66 24.825 76.899 31.770 1.00166.91 C ATOM 499 O GLN 66 25.208 78.033 31.492 1.00166.91 O ATOM 500 CB GLN 66 22.624 76.302 31.182 1.00166.91 C ATOM 501 CG GLN 66 21.729 75.321 30.481 1.00166.91 C ATOM 502 CD GLN 66 20.754 75.283 31.579 1.00166.91 C ATOM 503 OE1 GLN 66 20.131 74.270 31.876 1.00166.91 O ATOM 504 NE2 GLN 66 20.761 76.446 32.287 1.00166.91 N ATOM 505 N GLU 67 25.061 76.306 32.954 1.00 96.98 N ATOM 506 CA GLU 67 25.685 77.028 34.020 1.00 96.98 C ATOM 507 C GLU 67 26.992 77.489 33.491 1.00 96.98 C ATOM 508 O GLU 67 27.307 78.677 33.515 1.00 96.98 O ATOM 509 CB GLU 67 26.066 76.113 35.191 1.00 96.98 C ATOM 510 CG GLU 67 24.971 75.119 35.555 1.00 96.98 C ATOM 511 CD GLU 67 25.236 73.861 34.740 1.00 96.98 C ATOM 512 OE1 GLU 67 26.267 73.192 35.019 1.00 96.98 O ATOM 513 OE2 GLU 67 24.423 73.554 33.828 1.00 96.98 O ATOM 514 N VAL 68 27.774 76.537 32.955 1.00 25.10 N ATOM 515 CA VAL 68 29.050 76.873 32.410 1.00 25.10 C ATOM 516 C VAL 68 28.787 77.753 31.241 1.00 25.10 C ATOM 517 O VAL 68 29.444 78.773 31.041 1.00 25.10 O ATOM 518 CB VAL 68 29.802 75.674 31.912 1.00 25.10 C ATOM 519 CG1 VAL 68 31.107 76.152 31.256 1.00 25.10 C ATOM 520 CG2 VAL 68 30.012 74.704 33.087 1.00 25.10 C ATOM 521 N GLY 69 27.791 77.361 30.427 1.00 31.57 N ATOM 522 CA GLY 69 27.412 78.087 29.253 1.00 31.57 C ATOM 523 C GLY 69 27.792 77.305 28.025 1.00 31.57 C ATOM 524 O GLY 69 27.066 77.348 27.033 1.00 31.57 O ATOM 525 N PRO 70 28.900 76.609 28.024 1.00 89.33 N ATOM 526 CA PRO 70 29.229 75.873 26.827 1.00 89.33 C ATOM 527 C PRO 70 28.650 74.500 26.657 1.00 89.33 C ATOM 528 O PRO 70 28.295 73.838 27.632 1.00 89.33 O ATOM 529 CB PRO 70 30.754 75.877 26.713 1.00 89.33 C ATOM 530 CG PRO 70 31.254 76.340 28.084 1.00 89.33 C ATOM 531 CD PRO 70 30.097 77.202 28.595 1.00 89.33 C ATOM 532 N PRO 71 28.540 74.130 25.405 1.00 74.37 N ATOM 533 CA PRO 71 28.122 72.799 25.035 1.00 74.37 C ATOM 534 C PRO 71 29.313 71.892 25.015 1.00 74.37 C ATOM 535 O PRO 71 30.438 72.386 24.928 1.00 74.37 O ATOM 536 CB PRO 71 27.514 72.909 23.640 1.00 74.37 C ATOM 537 CG PRO 71 27.083 74.377 23.531 1.00 74.37 C ATOM 538 CD PRO 71 28.066 75.118 24.448 1.00 74.37 C ATOM 539 N ASP 72 29.099 70.565 25.074 1.00 48.01 N ATOM 540 CA ASP 72 30.211 69.667 25.001 1.00 48.01 C ATOM 541 C ASP 72 29.937 68.684 23.909 1.00 48.01 C ATOM 542 O ASP 72 28.892 68.033 23.896 1.00 48.01 O ATOM 543 CB ASP 72 30.451 68.873 26.296 1.00 48.01 C ATOM 544 CG ASP 72 30.948 69.848 27.355 1.00 48.01 C ATOM 545 OD1 ASP 72 31.142 71.045 27.012 1.00 48.01 O ATOM 546 OD2 ASP 72 31.142 69.409 28.520 1.00 48.01 O ATOM 547 N CYS 73 30.860 68.582 22.934 1.00 46.90 N ATOM 548 CA CYS 73 30.701 67.611 21.892 1.00 46.90 C ATOM 549 C CYS 73 32.005 66.901 21.777 1.00 46.90 C ATOM 550 O CYS 73 32.992 67.477 21.323 1.00 46.90 O ATOM 551 CB CYS 73 30.402 68.228 20.515 1.00 46.90 C ATOM 552 SG CYS 73 28.802 69.092 20.468 1.00 46.90 S ATOM 553 N ARG 74 32.055 65.630 22.214 1.00150.24 N ATOM 554 CA ARG 74 33.267 64.883 22.074 1.00150.24 C ATOM 555 C ARG 74 33.000 63.453 22.355 1.00150.24 C ATOM 556 O ARG 74 31.856 63.005 22.396 1.00150.24 O ATOM 557 CB ARG 74 34.447 65.316 22.959 1.00150.24 C ATOM 558 CG ARG 74 35.309 66.408 22.323 1.00150.24 C ATOM 559 CD ARG 74 35.916 66.022 20.970 1.00150.24 C ATOM 560 NE ARG 74 35.117 66.707 19.914 1.00150.24 N ATOM 561 CZ ARG 74 35.729 67.179 18.790 1.00150.24 C ATOM 562 NH1 ARG 74 37.067 66.979 18.605 1.00150.24 H ATOM 563 NH2 ARG 74 35.005 67.862 17.854 1.00150.24 H ATOM 564 N CYS 75 34.093 62.686 22.513 1.00 45.95 N ATOM 565 CA CYS 75 33.953 61.289 22.755 1.00 45.95 C ATOM 566 C CYS 75 34.822 60.933 23.907 1.00 45.95 C ATOM 567 O CYS 75 35.743 61.664 24.269 1.00 45.95 O ATOM 568 CB CYS 75 34.417 60.423 21.575 1.00 45.95 C ATOM 569 SG CYS 75 36.204 60.596 21.281 1.00 45.95 S ATOM 570 N ASP 76 34.502 59.797 24.546 1.00 68.11 N ATOM 571 CA ASP 76 35.322 59.328 25.615 1.00 68.11 C ATOM 572 C ASP 76 35.114 57.859 25.699 1.00 68.11 C ATOM 573 O ASP 76 34.001 57.370 25.506 1.00 68.11 O ATOM 574 CB ASP 76 34.979 59.938 26.988 1.00 68.11 C ATOM 575 CG ASP 76 33.575 59.520 27.408 1.00 68.11 C ATOM 576 OD1 ASP 76 33.388 58.330 27.777 1.00 68.11 O ATOM 577 OD2 ASP 76 32.669 60.396 27.375 1.00 68.11 O ATOM 578 N ASN 77 36.206 57.114 25.942 1.00108.17 N ATOM 579 CA ASN 77 36.072 55.710 26.154 1.00108.17 C ATOM 580 C ASN 77 35.580 55.544 27.536 1.00108.17 C ATOM 581 O ASN 77 35.518 56.492 28.316 1.00108.17 O ATOM 582 CB ASN 77 37.369 54.895 26.073 1.00108.17 C ATOM 583 CG ASN 77 37.553 54.497 24.631 1.00108.17 C ATOM 584 OD1 ASN 77 38.596 54.737 24.029 1.00108.17 O ATOM 585 ND2 ASN 77 36.498 53.855 24.063 1.00108.17 N ATOM 586 N LEU 78 35.190 54.309 27.866 1.00157.75 N ATOM 587 CA LEU 78 34.724 54.104 29.189 1.00157.75 C ATOM 588 C LEU 78 35.916 54.276 30.073 1.00157.75 C ATOM 589 O LEU 78 37.042 53.996 29.665 1.00157.75 O ATOM 590 CB LEU 78 34.131 52.702 29.380 1.00157.75 C ATOM 591 CG LEU 78 33.475 52.481 30.747 1.00157.75 C ATOM 592 CD1 LEU 78 32.284 53.431 30.960 1.00157.75 C ATOM 593 CD2 LEU 78 33.093 51.008 30.927 1.00157.75 C ATOM 594 N CYS 79 35.681 54.811 31.289 1.00 51.03 N ATOM 595 CA CYS 79 36.687 55.033 32.288 1.00 51.03 C ATOM 596 C CYS 79 37.833 55.760 31.673 1.00 51.03 C ATOM 597 O CYS 79 38.993 55.391 31.856 1.00 51.03 O ATOM 598 CB CYS 79 37.198 53.755 32.988 1.00 51.03 C ATOM 599 SG CYS 79 38.166 52.644 31.921 1.00 51.03 S ATOM 600 N LYS 80 37.529 56.834 30.925 1.00 99.23 N ATOM 601 CA LYS 80 38.583 57.568 30.300 1.00 99.23 C ATOM 602 C LYS 80 38.312 59.019 30.536 1.00 99.23 C ATOM 603 O LYS 80 37.231 59.394 30.987 1.00 99.23 O ATOM 604 CB LYS 80 38.653 57.321 28.786 1.00 99.23 C ATOM 605 CG LYS 80 39.967 57.755 28.161 1.00 99.23 C ATOM 606 CD LYS 80 40.213 57.182 26.767 1.00 99.23 C ATOM 607 CE LYS 80 40.670 55.721 26.778 1.00 99.23 C ATOM 608 NZ LYS 80 40.872 55.242 25.393 1.00 99.23 N ATOM 609 N SER 81 39.310 59.877 30.251 1.00 68.78 N ATOM 610 CA SER 81 39.137 61.281 30.475 1.00 68.78 C ATOM 611 C SER 81 38.205 61.805 29.433 1.00 68.78 C ATOM 612 O SER 81 37.966 61.164 28.411 1.00 68.78 O ATOM 613 CB SER 81 40.438 62.095 30.371 1.00 68.78 C ATOM 614 OG SER 81 40.909 62.089 29.032 1.00 68.78 O ATOM 615 N TYR 82 37.635 62.995 29.693 1.00 43.15 N ATOM 616 CA TYR 82 36.720 63.612 28.779 1.00 43.15 C ATOM 617 C TYR 82 37.524 64.483 27.868 1.00 43.15 C ATOM 618 O TYR 82 38.489 65.120 28.288 1.00 43.15 O ATOM 619 CB TYR 82 35.662 64.492 29.466 1.00 43.15 C ATOM 620 CG TYR 82 34.846 63.591 30.328 1.00 43.15 C ATOM 621 CD1 TYR 82 33.871 62.790 29.778 1.00 43.15 C ATOM 622 CD2 TYR 82 35.054 63.549 31.687 1.00 43.15 C ATOM 623 CE1 TYR 82 33.118 61.959 30.574 1.00 43.15 C ATOM 624 CE2 TYR 82 34.305 62.720 32.487 1.00 43.15 C ATOM 625 CZ TYR 82 33.335 61.922 31.929 1.00 43.15 C ATOM 626 OH TYR 82 32.561 61.072 32.747 1.00 43.15 H ATOM 627 N SER 83 37.151 64.503 26.574 1.00 37.48 N ATOM 628 CA SER 83 37.863 65.260 25.586 1.00 37.48 C ATOM 629 C SER 83 37.447 66.700 25.662 1.00 37.48 C ATOM 630 O SER 83 36.783 67.129 26.605 1.00 37.48 O ATOM 631 CB SER 83 37.610 64.778 24.147 1.00 37.48 C ATOM 632 OG SER 83 38.100 63.455 23.984 1.00 37.48 O ATOM 633 N SER 84 37.863 67.479 24.642 1.00 43.43 N ATOM 634 CA SER 84 37.639 68.896 24.556 1.00 43.43 C ATOM 635 C SER 84 36.176 69.137 24.343 1.00 43.43 C ATOM 636 O SER 84 35.376 68.206 24.378 1.00 43.43 O ATOM 637 CB SER 84 38.424 69.548 23.399 1.00 43.43 C ATOM 638 OG SER 84 38.246 70.957 23.391 1.00 43.43 O ATOM 639 N CYS 85 35.772 70.417 24.188 1.00 93.49 N ATOM 640 CA CYS 85 34.384 70.716 23.977 1.00 93.49 C ATOM 641 C CYS 85 34.242 71.975 23.167 1.00 93.49 C ATOM 642 O CYS 85 35.154 72.358 22.436 1.00 93.49 O ATOM 643 CB CYS 85 33.578 70.831 25.282 1.00 93.49 C ATOM 644 SG CYS 85 34.464 71.737 26.580 1.00 93.49 S ATOM 645 N CYS 86 33.053 72.621 23.251 1.00 46.22 N ATOM 646 CA CYS 86 32.733 73.811 22.503 1.00 46.22 C ATOM 647 C CYS 86 32.256 74.836 23.492 1.00 46.22 C ATOM 648 O CYS 86 32.221 74.569 24.690 1.00 46.22 O ATOM 649 CB CYS 86 31.599 73.567 21.484 1.00 46.22 C ATOM 650 SG CYS 86 31.269 74.964 20.363 1.00 46.22 S ATOM 651 N HIS 87 31.900 76.052 23.018 1.00 47.78 N ATOM 652 CA HIS 87 31.440 77.085 23.905 1.00 47.78 C ATOM 653 C HIS 87 30.244 77.752 23.292 1.00 47.78 C ATOM 654 O HIS 87 29.801 77.392 22.202 1.00 47.78 O ATOM 655 CB HIS 87 32.480 78.193 24.151 1.00 47.78 C ATOM 656 CG HIS 87 33.722 77.708 24.839 1.00 47.78 C ATOM 657 ND1 HIS 87 33.831 77.536 26.201 1.00 47.78 N ATOM 658 CD2 HIS 87 34.930 77.357 24.323 1.00 47.78 C ATOM 659 CE1 HIS 87 35.091 77.093 26.441 1.00 47.78 C ATOM 660 NE2 HIS 87 35.797 76.970 25.330 1.00 47.78 N ATOM 661 N ASP 88 29.702 78.761 24.005 1.00 70.90 N ATOM 662 CA ASP 88 28.604 79.573 23.556 1.00 70.90 C ATOM 663 C ASP 88 27.465 78.763 23.005 1.00 70.90 C ATOM 664 O ASP 88 27.192 78.791 21.808 1.00 70.90 O ATOM 665 CB ASP 88 29.036 80.634 22.521 1.00 70.90 C ATOM 666 CG ASP 88 29.609 79.978 21.268 1.00 70.90 C ATOM 667 OD1 ASP 88 30.794 79.552 21.305 1.00 70.90 O ATOM 668 OD2 ASP 88 28.868 79.899 20.252 1.00 70.90 O ATOM 669 N PHE 89 26.766 78.010 23.880 1.00 58.83 N ATOM 670 CA PHE 89 25.658 77.188 23.473 1.00 58.83 C ATOM 671 C PHE 89 24.523 78.006 22.938 1.00 58.83 C ATOM 672 O PHE 89 23.982 77.710 21.874 1.00 58.83 O ATOM 673 CB PHE 89 25.066 76.356 24.621 1.00 58.83 C ATOM 674 CG PHE 89 23.849 75.704 24.061 1.00 58.83 C ATOM 675 CD1 PHE 89 23.951 74.573 23.286 1.00 58.83 C ATOM 676 CD2 PHE 89 22.602 76.228 24.312 1.00 58.83 C ATOM 677 CE1 PHE 89 22.825 73.977 22.768 1.00 58.83 C ATOM 678 CE2 PHE 89 21.474 75.634 23.798 1.00 58.83 C ATOM 679 CZ PHE 89 21.583 74.505 23.026 1.00 58.83 C ATOM 680 N ASP 90 24.149 79.081 23.652 1.00 49.46 N ATOM 681 CA ASP 90 22.979 79.839 23.316 1.00 49.46 C ATOM 682 C ASP 90 23.110 80.401 21.940 1.00 49.46 C ATOM 683 O ASP 90 22.139 80.436 21.186 1.00 49.46 O ATOM 684 CB ASP 90 22.755 81.013 24.282 1.00 49.46 C ATOM 685 CG ASP 90 22.402 80.414 25.635 1.00 49.46 C ATOM 686 OD1 ASP 90 21.481 79.554 25.677 1.00 49.46 O ATOM 687 OD2 ASP 90 23.058 80.794 26.640 1.00 49.46 O ATOM 688 N GLU 91 24.314 80.849 21.555 1.00126.48 N ATOM 689 CA GLU 91 24.414 81.452 20.261 1.00126.48 C ATOM 690 C GLU 91 24.089 80.497 19.152 1.00126.48 C ATOM 691 O GLU 91 23.504 80.909 18.153 1.00126.48 O ATOM 692 CB GLU 91 25.720 82.223 19.991 1.00126.48 C ATOM 693 CG GLU 91 26.921 81.756 20.798 1.00126.48 C ATOM 694 CD GLU 91 26.893 82.592 22.073 1.00126.48 C ATOM 695 OE1 GLU 91 25.808 82.667 22.710 1.00126.48 O ATOM 696 OE2 GLU 91 27.956 83.169 22.424 1.00126.48 O ATOM 697 N LEU 92 24.434 79.202 19.272 1.00 87.49 N ATOM 698 CA LEU 92 24.116 78.324 18.177 1.00 87.49 C ATOM 699 C LEU 92 22.628 78.250 17.980 1.00 87.49 C ATOM 700 O LEU 92 22.135 78.315 16.855 1.00 87.49 O ATOM 701 CB LEU 92 24.624 76.884 18.367 1.00 87.49 C ATOM 702 CG LEU 92 26.156 76.744 18.276 1.00 87.49 C ATOM 703 CD1 LEU 92 26.862 77.489 19.417 1.00 87.49 C ATOM 704 CD2 LEU 92 26.577 75.269 18.176 1.00 87.49 C ATOM 705 N CYS 93 21.875 78.142 19.087 1.00102.88 N ATOM 706 CA CYS 93 20.450 77.952 19.127 1.00102.88 C ATOM 707 C CYS 93 19.694 79.196 18.785 1.00102.88 C ATOM 708 O CYS 93 18.493 79.258 19.036 1.00102.88 O ATOM 709 CB CYS 93 19.923 77.380 20.460 1.00102.88 C ATOM 710 SG CYS 93 20.181 78.465 21.891 1.00102.88 S ATOM 711 N LEU 94 20.374 80.268 18.336 1.00 78.79 N ATOM 712 CA LEU 94 19.649 81.479 18.062 1.00 78.79 C ATOM 713 C LEU 94 18.480 81.244 17.165 1.00 78.79 C ATOM 714 O LEU 94 18.605 80.705 16.069 1.00 78.79 O ATOM 715 CB LEU 94 20.488 82.578 17.401 1.00 78.79 C ATOM 716 CG LEU 94 19.674 83.863 17.168 1.00 78.79 C ATOM 717 CD1 LEU 94 19.359 84.592 18.468 1.00 78.79 C ATOM 718 CD2 LEU 94 20.335 84.749 16.096 1.00 78.79 C ATOM 719 N LYS 95 17.294 81.648 17.659 1.00139.23 N ATOM 720 CA LYS 95 16.043 81.627 16.955 1.00139.23 C ATOM 721 C LYS 95 15.819 80.319 16.271 1.00139.23 C ATOM 722 O LYS 95 15.563 80.294 15.068 1.00139.23 O ATOM 723 CB LYS 95 15.922 82.748 15.907 1.00139.23 C ATOM 724 CG LYS 95 14.536 82.848 15.265 1.00139.23 C ATOM 725 CD LYS 95 13.446 83.373 16.203 1.00139.23 C ATOM 726 CE LYS 95 12.987 82.364 17.260 1.00139.23 C ATOM 727 NZ LYS 95 13.761 82.545 18.509 1.00139.23 N TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 90.77 28.2 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 97.82 25.0 56 100.0 56 ARMSMC BURIED . . . . . . . . 69.70 36.4 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 86.49 47.2 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 87.68 45.7 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 85.87 44.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 87.86 54.5 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 89.26 30.4 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 83.16 35.3 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 91.04 27.8 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 82.53 40.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 87.14 33.3 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 73.81 37.5 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 96.38 28.6 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 40.75 50.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 63.31 40.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 63.31 40.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 68.96 50.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 31.97 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 10.99 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 10.99 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.2747 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 11.27 29 100.0 29 CRMSCA BURIED . . . . . . . . 10.21 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 11.00 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 11.22 142 100.0 142 CRMSMC BURIED . . . . . . . . 10.41 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 12.34 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 11.79 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 13.02 103 100.0 103 CRMSSC BURIED . . . . . . . . 10.39 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 11.61 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 12.04 219 100.0 219 CRMSALL BURIED . . . . . . . . 10.39 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 70.901 0.753 0.776 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 72.660 0.763 0.787 29 100.0 29 ERRCA BURIED . . . . . . . . 66.264 0.727 0.749 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 71.356 0.756 0.780 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 73.371 0.768 0.792 142 100.0 142 ERRMC BURIED . . . . . . . . 66.151 0.725 0.748 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 77.192 0.750 0.778 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 77.240 0.762 0.790 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 79.177 0.753 0.784 103 100.0 103 ERRSC BURIED . . . . . . . . 72.080 0.741 0.764 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 73.925 0.753 0.779 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 75.807 0.761 0.787 219 100.0 219 ERRALL BURIED . . . . . . . . 69.016 0.733 0.756 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 2 2 7 25 40 40 DISTCA CA (P) 0.00 5.00 5.00 17.50 62.50 40 DISTCA CA (RMS) 0.00 1.28 1.28 3.62 6.92 DISTCA ALL (N) 2 6 12 38 163 303 303 DISTALL ALL (P) 0.66 1.98 3.96 12.54 53.80 303 DISTALL ALL (RMS) 0.76 1.16 1.97 3.74 6.90 DISTALL END of the results output