####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 45 ( 345), selected 45 , name T0543TS429_1-D2 # Molecule2: number of CA atoms 45 ( 345), selected 45 , name T0543-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS429_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 28 112 - 139 4.96 11.34 LONGEST_CONTINUOUS_SEGMENT: 28 113 - 140 4.74 11.27 LCS_AVERAGE: 55.31 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 117 - 133 1.86 10.43 LCS_AVERAGE: 23.41 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 122 - 130 0.85 10.05 LCS_AVERAGE: 11.41 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 45 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT T 96 T 96 4 5 19 3 3 4 4 5 7 8 12 13 15 15 17 17 17 19 25 25 28 29 32 LCS_GDT A 97 A 97 4 5 19 3 3 4 4 5 8 8 10 14 15 16 17 17 19 22 25 25 28 29 32 LCS_GDT R 98 R 98 4 5 19 3 3 4 4 5 8 11 12 14 15 16 17 17 19 22 25 25 28 29 32 LCS_GDT G 99 G 99 4 5 19 3 3 4 6 8 10 11 12 14 15 16 17 17 18 22 25 25 28 29 32 LCS_GDT W 100 W 100 4 5 19 3 3 4 4 5 8 11 12 13 15 16 17 17 18 20 23 25 28 29 32 LCS_GDT E 101 E 101 4 5 19 3 3 6 7 8 10 11 12 14 15 16 17 17 17 19 21 23 24 28 29 LCS_GDT C 102 C 102 3 5 19 3 3 4 5 8 10 11 12 14 15 16 17 17 18 19 23 25 26 28 29 LCS_GDT T 103 T 103 4 5 19 3 4 4 7 8 10 11 12 14 15 16 17 18 19 21 23 25 28 29 32 LCS_GDT K 104 K 104 4 6 19 3 4 4 5 7 7 10 12 14 15 16 17 17 17 19 21 25 26 29 32 LCS_GDT D 105 D 105 4 6 19 3 4 4 5 7 10 11 12 14 15 16 17 20 21 22 25 25 28 29 32 LCS_GDT R 106 R 106 4 7 19 3 4 6 7 12 14 16 17 18 20 23 23 25 27 27 28 30 30 31 33 LCS_GDT C 107 C 107 4 7 19 3 4 6 7 8 10 11 12 14 15 17 19 21 24 26 26 28 30 31 33 LCS_GDT G 108 G 108 4 7 19 3 4 6 7 8 10 11 12 14 15 16 17 18 22 23 24 26 28 30 33 LCS_GDT E 109 E 109 4 7 19 3 4 6 7 8 10 11 12 14 15 16 17 21 23 26 28 30 30 31 33 LCS_GDT V 110 V 110 3 7 19 3 4 4 4 5 10 11 12 14 15 16 19 22 24 27 28 30 30 31 33 LCS_GDT R 111 R 111 3 7 23 3 3 6 7 8 10 11 12 14 15 16 17 18 22 23 24 26 28 28 33 LCS_GDT N 112 N 112 3 7 28 3 3 5 7 8 10 11 12 14 15 18 20 24 27 27 28 30 30 31 33 LCS_GDT E 113 E 113 3 6 28 3 3 4 5 6 9 10 12 13 13 15 17 21 23 25 26 30 30 31 33 LCS_GDT E 114 E 114 4 6 28 3 4 4 5 5 8 10 14 19 21 24 25 25 27 27 28 30 30 31 33 LCS_GDT N 115 N 115 4 6 28 3 4 4 5 7 13 18 20 22 24 24 25 25 27 27 28 30 30 31 33 LCS_GDT A 116 A 116 4 15 28 3 4 9 11 13 17 19 22 23 24 24 25 25 27 27 28 30 30 31 33 LCS_GDT C 117 C 117 4 17 28 3 7 9 11 16 17 19 22 23 24 24 25 25 27 27 28 30 30 31 33 LCS_GDT H 118 H 118 4 17 28 3 4 4 7 13 17 19 22 23 24 24 25 25 27 27 28 30 30 31 33 LCS_GDT C 119 C 119 5 17 28 3 9 12 14 16 17 19 22 23 24 24 25 25 27 27 28 30 30 31 33 LCS_GDT S 120 S 120 5 17 28 3 8 12 14 16 17 19 22 23 24 24 25 25 27 27 28 30 30 31 33 LCS_GDT E 121 E 121 5 17 28 3 9 12 14 16 17 19 21 23 24 24 25 25 27 27 28 30 30 31 33 LCS_GDT D 122 D 122 9 17 28 3 9 12 14 16 17 19 22 23 24 24 25 25 27 27 28 30 30 31 33 LCS_GDT C 123 C 123 9 17 28 5 9 12 14 16 17 19 22 23 24 24 25 25 27 27 28 30 30 31 33 LCS_GDT L 124 L 124 9 17 28 3 7 12 14 16 17 19 22 23 24 24 25 25 27 27 28 30 30 31 33 LCS_GDT S 125 S 125 9 17 28 3 7 12 14 16 17 19 22 23 24 24 25 25 27 27 28 30 30 31 33 LCS_GDT R 126 R 126 9 17 28 5 8 12 14 16 17 19 22 23 24 24 25 25 27 27 28 30 30 31 33 LCS_GDT G 127 G 127 9 17 28 3 9 12 14 16 17 19 22 23 24 24 25 25 27 27 28 30 30 31 33 LCS_GDT D 128 D 128 9 17 28 5 9 12 14 16 17 19 22 23 24 24 25 25 27 27 28 30 30 31 33 LCS_GDT C 129 C 129 9 17 28 5 9 12 14 16 17 19 22 23 24 24 25 25 27 27 28 30 30 31 33 LCS_GDT C 130 C 130 9 17 28 5 9 12 14 16 17 19 22 23 24 24 25 25 27 27 28 30 30 31 33 LCS_GDT T 131 T 131 6 17 28 5 5 6 13 16 17 19 22 23 24 24 25 25 27 27 28 30 30 31 33 LCS_GDT N 132 N 132 6 17 28 5 9 12 14 16 17 19 22 23 24 24 25 25 27 27 28 30 30 31 33 LCS_GDT Y 133 Y 133 6 17 28 5 5 9 12 16 17 19 22 23 24 24 25 25 27 27 28 30 30 31 33 LCS_GDT Q 134 Q 134 5 9 28 5 5 7 8 9 11 19 22 23 24 24 25 25 27 27 28 30 30 31 33 LCS_GDT V 135 V 135 5 9 28 5 5 7 8 9 11 19 22 23 24 24 25 25 27 27 28 30 30 31 33 LCS_GDT V 136 V 136 5 9 28 5 5 7 8 9 12 19 22 23 24 24 25 25 27 27 28 30 30 31 33 LCS_GDT C 137 C 137 4 9 28 3 3 4 4 8 10 12 13 17 21 22 23 24 24 25 26 27 27 30 31 LCS_GDT K 138 K 138 4 5 28 3 3 4 4 5 10 16 22 23 24 24 25 25 26 26 27 28 30 31 32 LCS_GDT G 139 G 139 4 5 28 3 3 4 4 12 17 19 22 23 24 24 25 25 27 27 28 30 30 31 33 LCS_GDT E 140 E 140 3 5 28 3 3 12 14 15 17 19 20 20 21 23 25 25 27 27 28 30 30 31 33 LCS_AVERAGE LCS_A: 30.04 ( 11.41 23.41 55.31 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 9 12 14 16 17 19 22 23 24 24 25 25 27 27 28 30 30 31 33 GDT PERCENT_AT 11.11 20.00 26.67 31.11 35.56 37.78 42.22 48.89 51.11 53.33 53.33 55.56 55.56 60.00 60.00 62.22 66.67 66.67 68.89 73.33 GDT RMS_LOCAL 0.17 0.70 0.97 1.14 1.67 1.69 2.17 2.91 2.96 3.19 3.19 3.67 3.74 4.46 4.46 4.88 5.41 5.32 5.57 6.12 GDT RMS_ALL_AT 18.07 10.13 10.10 10.14 10.30 10.26 10.96 11.53 11.44 11.16 11.16 11.16 10.82 10.55 10.55 10.54 10.74 10.82 10.78 10.76 # Checking swapping # possible swapping detected: E 109 E 109 # possible swapping detected: D 128 D 128 # possible swapping detected: Y 133 Y 133 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA T 96 T 96 19.513 0 0.512 0.569 21.697 0.000 0.000 LGA A 97 A 97 19.361 0 0.554 0.575 20.114 0.000 0.000 LGA R 98 R 98 19.579 0 0.556 1.111 28.928 0.000 0.000 LGA G 99 G 99 17.178 0 0.134 0.134 17.261 0.000 0.000 LGA W 100 W 100 14.827 0 0.522 1.420 17.645 0.000 0.034 LGA E 101 E 101 18.038 0 0.143 0.801 24.258 0.000 0.000 LGA C 102 C 102 17.208 0 0.420 0.884 18.876 0.000 0.000 LGA T 103 T 103 15.500 0 0.250 0.963 15.500 0.000 0.000 LGA K 104 K 104 17.085 0 0.058 1.131 23.552 0.000 0.000 LGA D 105 D 105 15.956 0 0.478 0.962 17.299 0.000 0.000 LGA R 106 R 106 11.054 0 0.539 0.958 14.003 0.000 11.948 LGA C 107 C 107 16.581 0 0.069 0.095 18.668 0.000 0.000 LGA G 108 G 108 19.332 0 0.255 0.255 20.999 0.000 0.000 LGA E 109 E 109 17.838 0 0.236 0.937 17.950 0.000 0.000 LGA V 110 V 110 18.475 0 0.673 0.924 18.627 0.000 0.000 LGA R 111 R 111 19.387 0 0.109 1.004 25.154 0.000 0.000 LGA N 112 N 112 16.724 0 0.247 1.068 17.644 0.000 0.000 LGA E 113 E 113 16.715 0 0.213 0.904 21.631 0.000 0.000 LGA E 114 E 114 12.380 0 0.619 1.251 18.278 1.905 0.847 LGA N 115 N 115 7.457 0 0.121 0.342 13.206 11.310 6.012 LGA A 116 A 116 3.172 0 0.527 0.494 4.697 45.476 46.381 LGA C 117 C 117 1.594 0 0.172 0.707 4.237 77.143 69.762 LGA H 118 H 118 3.057 0 0.203 1.047 9.540 44.048 25.095 LGA C 119 C 119 3.196 0 0.486 0.878 5.752 59.286 50.317 LGA S 120 S 120 2.062 0 0.131 0.650 4.722 52.738 54.524 LGA E 121 E 121 3.987 0 0.385 1.201 10.953 51.905 27.143 LGA D 122 D 122 3.090 0 0.145 0.856 6.303 59.405 43.214 LGA C 123 C 123 1.476 0 0.086 0.789 5.267 79.881 69.762 LGA L 124 L 124 2.783 0 0.033 1.253 5.364 57.619 46.786 LGA S 125 S 125 2.103 0 0.132 0.513 3.614 61.429 65.317 LGA R 126 R 126 2.795 0 0.033 0.914 6.956 55.833 41.948 LGA G 127 G 127 2.840 0 0.281 0.281 3.781 53.690 53.690 LGA D 128 D 128 2.865 0 0.405 1.299 6.153 59.048 44.940 LGA C 129 C 129 0.706 0 0.081 0.231 1.477 92.976 93.730 LGA C 130 C 130 1.163 0 0.039 0.743 2.613 83.690 77.460 LGA T 131 T 131 3.136 0 0.203 1.094 5.161 57.262 48.912 LGA N 132 N 132 3.026 0 0.278 0.987 4.211 67.619 58.988 LGA Y 133 Y 133 0.972 0 0.037 1.187 4.188 73.333 65.675 LGA Q 134 Q 134 4.083 0 0.044 0.692 9.627 38.214 22.910 LGA V 135 V 135 3.726 0 0.293 0.951 4.407 43.452 46.327 LGA V 136 V 136 4.494 0 0.628 0.509 7.044 27.976 30.544 LGA C 137 C 137 8.051 0 0.099 0.622 12.038 11.310 7.540 LGA K 138 K 138 4.400 0 0.684 1.106 14.187 44.405 21.376 LGA G 139 G 139 3.215 0 0.593 0.593 6.372 35.833 35.833 LGA E 140 E 140 9.057 0 0.221 0.740 15.058 5.000 2.222 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 45 180 180 100.00 345 345 100.00 45 SUMMARY(RMSD_GDC): 9.475 9.345 10.786 30.040 25.983 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 45 45 4.0 22 2.91 40.556 37.558 0.730 LGA_LOCAL RMSD: 2.913 Number of atoms: 22 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 11.533 Number of assigned atoms: 45 Std_ASGN_ATOMS RMSD: 9.475 Standard rmsd on all 45 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.151265 * X + -0.000384 * Y + 0.988493 * Z + -7.416679 Y_new = 0.633124 * X + 0.768000 * Y + -0.096586 * Z + 78.647308 Z_new = -0.759126 * X + 0.640449 * Y + 0.116414 * Z + 12.976250 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.336275 0.861970 1.390990 [DEG: 76.5629 49.3872 79.6979 ] ZXZ: 1.473395 1.454118 -0.869991 [DEG: 84.4193 83.3148 -49.8468 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS429_1-D2 REMARK 2: T0543-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS429_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 45 45 4.0 22 2.91 37.558 9.47 REMARK ---------------------------------------------------------- MOLECULE T0543TS429_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REFINED REMARK PARENT N/A ATOM 728 N THR 96 30.952 73.111 12.193 1.00 0.00 N ATOM 729 CA THR 96 29.695 73.369 11.514 1.00 0.00 C ATOM 730 C THR 96 28.477 72.433 11.883 1.00 0.00 C ATOM 731 O THR 96 28.313 71.392 11.246 1.00 0.00 O ATOM 732 CB THR 96 29.838 73.559 10.002 1.00 0.00 C ATOM 733 OG1 THR 96 30.906 74.448 9.555 1.00 0.00 O ATOM 734 CG2 THR 96 28.533 74.185 9.430 1.00 0.00 C ATOM 735 N ALA 97 28.080 72.585 13.117 1.00 0.00 N ATOM 736 CA ALA 97 26.940 71.962 13.738 1.00 0.00 C ATOM 737 C ALA 97 26.175 73.055 14.587 1.00 0.00 C ATOM 738 O ALA 97 24.987 73.281 14.356 1.00 0.00 O ATOM 739 CB ALA 97 27.392 70.757 14.565 1.00 0.00 C ATOM 740 N ARG 98 26.966 73.860 15.335 1.00 0.00 N ATOM 741 CA ARG 98 26.529 74.952 16.200 1.00 0.00 C ATOM 742 C ARG 98 26.930 76.336 15.618 1.00 0.00 C ATOM 743 O ARG 98 28.127 76.614 15.384 1.00 0.00 O ATOM 744 CB ARG 98 27.094 74.683 17.602 1.00 0.00 C ATOM 745 CG ARG 98 28.596 74.406 17.762 1.00 0.00 C ATOM 746 CD ARG 98 28.982 74.099 19.215 1.00 0.00 C ATOM 747 NE ARG 98 30.456 73.838 19.275 1.00 0.00 N ATOM 748 CZ ARG 98 31.074 73.412 20.419 1.00 0.00 C ATOM 749 NH1 ARG 98 32.421 73.202 20.412 1.00 0.00 H ATOM 750 NH2 ARG 98 30.346 73.197 21.551 1.00 0.00 H ATOM 751 N GLY 99 25.907 77.198 15.518 1.00 0.00 N ATOM 752 CA GLY 99 25.956 78.504 14.931 1.00 0.00 C ATOM 753 C GLY 99 24.524 79.129 14.787 1.00 0.00 C ATOM 754 O GLY 99 23.499 78.442 14.838 1.00 0.00 O ATOM 755 N TRP 100 24.635 80.260 14.091 1.00 0.00 N ATOM 756 CA TRP 100 23.591 81.162 13.691 1.00 0.00 C ATOM 757 C TRP 100 24.170 81.715 12.371 1.00 0.00 C ATOM 758 O TRP 100 25.107 82.548 12.376 1.00 0.00 O ATOM 759 CB TRP 100 23.771 82.290 14.633 1.00 0.00 C ATOM 760 CG TRP 100 22.822 83.494 14.718 1.00 0.00 C ATOM 761 CD1 TRP 100 22.536 84.193 13.582 1.00 0.00 C ATOM 762 CD2 TRP 100 22.357 84.113 15.852 1.00 0.00 C ATOM 763 NE1 TRP 100 21.916 85.279 13.981 1.00 0.00 N ATOM 764 CE2 TRP 100 21.782 85.284 15.318 1.00 0.00 C ATOM 765 CE3 TRP 100 22.345 83.870 17.240 1.00 0.00 C ATOM 766 CZ2 TRP 100 21.192 86.231 16.160 1.00 0.00 C ATOM 767 CZ3 TRP 100 21.753 84.819 18.087 1.00 0.00 C ATOM 768 CH2 TRP 100 21.184 85.989 17.546 1.00 0.00 H ATOM 769 N GLU 101 23.654 81.333 11.215 1.00 0.00 N ATOM 770 CA GLU 101 24.279 81.778 9.946 1.00 0.00 C ATOM 771 C GLU 101 23.999 83.271 9.701 1.00 0.00 C ATOM 772 O GLU 101 22.852 83.559 9.321 1.00 0.00 O ATOM 773 CB GLU 101 23.854 80.837 8.821 1.00 0.00 C ATOM 774 CG GLU 101 24.280 79.408 8.944 1.00 0.00 C ATOM 775 CD GLU 101 23.824 78.550 7.762 1.00 0.00 C ATOM 776 OE1 GLU 101 24.712 78.057 7.022 1.00 0.00 O ATOM 777 OE2 GLU 101 22.588 78.376 7.604 1.00 0.00 O ATOM 778 N CYS 102 25.017 84.134 9.693 1.00 0.00 N ATOM 779 CA CYS 102 24.702 85.559 9.491 1.00 0.00 C ATOM 780 C CYS 102 23.657 85.905 10.590 1.00 0.00 C ATOM 781 O CYS 102 24.116 86.218 11.685 1.00 0.00 O ATOM 782 CB CYS 102 24.288 85.911 8.017 1.00 0.00 C ATOM 783 SG CYS 102 24.138 87.713 7.753 1.00 0.00 S ATOM 784 N THR 103 22.422 86.337 10.218 1.00 0.00 N ATOM 785 CA THR 103 21.316 86.598 11.118 1.00 0.00 C ATOM 786 C THR 103 20.249 85.465 10.806 1.00 0.00 C ATOM 787 O THR 103 19.502 85.607 9.844 1.00 0.00 O ATOM 788 CB THR 103 20.653 87.963 10.775 1.00 0.00 C ATOM 789 OG1 THR 103 21.595 89.012 10.569 1.00 0.00 O ATOM 790 CG2 THR 103 19.495 88.324 11.755 1.00 0.00 C ATOM 791 N LYS 104 20.407 84.306 11.404 1.00 0.00 N ATOM 792 CA LYS 104 19.478 83.158 11.294 1.00 0.00 C ATOM 793 C LYS 104 18.301 83.369 12.320 1.00 0.00 C ATOM 794 O LYS 104 17.210 82.899 12.041 1.00 0.00 O ATOM 795 CB LYS 104 20.214 81.823 11.529 1.00 0.00 C ATOM 796 CG LYS 104 19.340 80.555 11.321 1.00 0.00 C ATOM 797 CD LYS 104 18.815 80.349 9.882 1.00 0.00 C ATOM 798 CE LYS 104 19.876 79.951 8.848 1.00 0.00 C ATOM 799 NZ LYS 104 20.358 78.578 9.104 1.00 0.00 N ATOM 800 N ASP 105 18.663 83.689 13.536 1.00 0.00 N ATOM 801 CA ASP 105 17.792 84.018 14.594 1.00 0.00 C ATOM 802 C ASP 105 18.009 85.490 14.840 1.00 0.00 C ATOM 803 O ASP 105 18.571 85.730 15.881 1.00 0.00 O ATOM 804 CB ASP 105 18.000 83.103 15.812 1.00 0.00 C ATOM 805 CG ASP 105 17.712 81.659 15.619 1.00 0.00 C ATOM 806 OD1 ASP 105 18.693 80.887 15.700 1.00 0.00 O ATOM 807 OD2 ASP 105 16.514 81.386 15.306 1.00 0.00 O ATOM 808 N ARG 106 16.990 86.188 14.536 1.00 0.00 N ATOM 809 CA ARG 106 17.023 87.627 14.523 1.00 0.00 C ATOM 810 C ARG 106 17.990 88.265 15.535 1.00 0.00 C ATOM 811 O ARG 106 17.773 88.240 16.758 1.00 0.00 O ATOM 812 CB ARG 106 15.610 88.214 14.772 1.00 0.00 C ATOM 813 CG ARG 106 15.438 89.633 14.181 1.00 0.00 C ATOM 814 CD ARG 106 13.964 90.000 13.992 1.00 0.00 C ATOM 815 NE ARG 106 13.892 91.323 13.289 1.00 0.00 N ATOM 816 CZ ARG 106 12.708 91.854 12.860 1.00 0.00 C ATOM 817 NH1 ARG 106 11.540 91.183 13.070 1.00 0.00 H ATOM 818 NH2 ARG 106 12.707 93.067 12.238 1.00 0.00 H ATOM 819 N CYS 107 18.933 89.026 14.918 1.00 0.00 N ATOM 820 CA CYS 107 19.905 89.822 15.563 1.00 0.00 C ATOM 821 C CYS 107 19.114 90.960 16.229 1.00 0.00 C ATOM 822 O CYS 107 18.207 91.509 15.575 1.00 0.00 O ATOM 823 CB CYS 107 20.987 90.326 14.595 1.00 0.00 C ATOM 824 SG CYS 107 22.024 88.928 14.058 1.00 0.00 S ATOM 825 N GLY 108 19.634 91.607 17.216 1.00 0.00 N ATOM 826 CA GLY 108 18.877 92.644 17.973 1.00 0.00 C ATOM 827 C GLY 108 18.414 92.008 19.310 1.00 0.00 C ATOM 828 O GLY 108 18.524 92.667 20.356 1.00 0.00 O ATOM 829 N GLU 109 18.072 90.708 19.284 1.00 0.00 N ATOM 830 CA GLU 109 17.715 89.906 20.419 1.00 0.00 C ATOM 831 C GLU 109 18.523 88.617 20.270 1.00 0.00 C ATOM 832 O GLU 109 18.081 87.714 19.533 1.00 0.00 O ATOM 833 CB GLU 109 16.211 89.652 20.468 1.00 0.00 C ATOM 834 CG GLU 109 15.352 90.871 20.721 1.00 0.00 C ATOM 835 CD GLU 109 13.863 90.546 20.838 1.00 0.00 C ATOM 836 OE1 GLU 109 13.495 89.803 21.785 1.00 0.00 O ATOM 837 OE2 GLU 109 13.084 91.055 19.990 1.00 0.00 O ATOM 838 N VAL 110 19.531 88.453 21.092 1.00 0.00 N ATOM 839 CA VAL 110 20.346 87.214 20.943 1.00 0.00 C ATOM 840 C VAL 110 20.136 86.209 22.095 1.00 0.00 C ATOM 841 O VAL 110 20.290 85.015 21.840 1.00 0.00 O ATOM 842 CB VAL 110 21.844 87.661 20.818 1.00 0.00 C ATOM 843 CG1 VAL 110 22.775 86.448 20.732 1.00 0.00 C ATOM 844 CG2 VAL 110 22.083 88.482 19.575 1.00 0.00 C ATOM 845 N ARG 111 19.779 86.689 23.285 1.00 0.00 N ATOM 846 CA ARG 111 19.447 85.887 24.445 1.00 0.00 C ATOM 847 C ARG 111 18.359 84.907 23.963 1.00 0.00 C ATOM 848 O ARG 111 17.523 85.268 23.094 1.00 0.00 O ATOM 849 CB ARG 111 18.941 86.717 25.686 1.00 0.00 C ATOM 850 CG ARG 111 18.532 85.683 26.838 1.00 0.00 C ATOM 851 CD ARG 111 17.996 86.296 28.043 1.00 0.00 C ATOM 852 NE ARG 111 17.929 85.430 29.231 1.00 0.00 N ATOM 853 CZ ARG 111 17.010 84.427 29.331 1.00 0.00 C ATOM 854 NH1 ARG 111 16.102 84.150 28.387 1.00 0.00 H ATOM 855 NH2 ARG 111 17.032 83.627 30.400 1.00 0.00 H ATOM 856 N ASN 112 18.310 83.689 24.514 1.00 0.00 N ATOM 857 CA ASN 112 17.276 82.788 24.048 1.00 0.00 C ATOM 858 C ASN 112 15.929 83.058 24.742 1.00 0.00 C ATOM 859 O ASN 112 15.518 82.252 25.590 1.00 0.00 O ATOM 860 CB ASN 112 17.760 81.357 24.297 1.00 0.00 C ATOM 861 CG ASN 112 19.091 81.057 23.684 1.00 0.00 C ATOM 862 OD1 ASN 112 20.119 81.289 24.329 1.00 0.00 O ATOM 863 ND2 ASN 112 19.113 80.544 22.428 1.00 0.00 N ATOM 864 N GLU 113 15.242 84.191 24.428 1.00 0.00 N ATOM 865 CA GLU 113 13.945 84.453 24.956 1.00 0.00 C ATOM 866 C GLU 113 12.820 83.801 24.107 1.00 0.00 C ATOM 867 O GLU 113 12.071 82.938 24.602 1.00 0.00 O ATOM 868 CB GLU 113 13.745 85.962 25.127 1.00 0.00 C ATOM 869 CG GLU 113 14.775 86.644 26.047 1.00 0.00 C ATOM 870 CD GLU 113 14.473 88.117 26.321 1.00 0.00 C ATOM 871 OE1 GLU 113 13.381 88.395 26.878 1.00 0.00 O ATOM 872 OE2 GLU 113 15.339 88.973 25.996 1.00 0.00 O ATOM 873 N GLU 114 12.874 84.115 22.793 1.00 0.00 N ATOM 874 CA GLU 114 11.998 83.584 21.706 1.00 0.00 C ATOM 875 C GLU 114 12.881 83.613 20.482 1.00 0.00 C ATOM 876 O GLU 114 13.184 84.759 20.038 1.00 0.00 O ATOM 877 CB GLU 114 10.641 84.343 21.601 1.00 0.00 C ATOM 878 CG GLU 114 9.733 83.893 20.418 1.00 0.00 C ATOM 879 CD GLU 114 9.332 82.416 20.487 1.00 0.00 C ATOM 880 OE1 GLU 114 8.143 82.143 20.792 1.00 0.00 O ATOM 881 OE2 GLU 114 10.212 81.555 20.209 1.00 0.00 O ATOM 882 N ASN 115 13.111 82.482 19.825 1.00 0.00 N ATOM 883 CA ASN 115 14.014 82.544 18.676 1.00 0.00 C ATOM 884 C ASN 115 13.263 83.097 17.449 1.00 0.00 C ATOM 885 O ASN 115 12.281 82.494 16.996 1.00 0.00 O ATOM 886 CB ASN 115 14.544 81.136 18.382 1.00 0.00 C ATOM 887 CG ASN 115 15.477 80.635 19.464 1.00 0.00 C ATOM 888 OD1 ASN 115 16.553 81.155 19.652 1.00 0.00 O ATOM 889 ND2 ASN 115 15.056 79.613 20.163 1.00 0.00 N ATOM 890 N ALA 116 13.762 84.234 16.929 1.00 0.00 N ATOM 891 CA ALA 116 13.105 84.822 15.769 1.00 0.00 C ATOM 892 C ALA 116 13.963 84.476 14.523 1.00 0.00 C ATOM 893 O ALA 116 14.470 85.430 13.942 1.00 0.00 O ATOM 894 CB ALA 116 12.847 86.326 16.011 1.00 0.00 C ATOM 895 N CYS 117 13.522 83.487 13.825 1.00 0.00 N ATOM 896 CA CYS 117 14.244 83.023 12.660 1.00 0.00 C ATOM 897 C CYS 117 13.920 83.870 11.406 1.00 0.00 C ATOM 898 O CYS 117 12.739 84.073 11.096 1.00 0.00 O ATOM 899 CB CYS 117 13.978 81.562 12.343 1.00 0.00 C ATOM 900 SG CYS 117 14.887 80.807 10.953 1.00 0.00 S ATOM 901 N HIS 118 14.895 84.646 10.938 1.00 0.00 N ATOM 902 CA HIS 118 14.776 85.419 9.710 1.00 0.00 C ATOM 903 C HIS 118 15.327 84.507 8.589 1.00 0.00 C ATOM 904 O HIS 118 16.543 84.291 8.512 1.00 0.00 O ATOM 905 CB HIS 118 15.514 86.765 9.846 1.00 0.00 C ATOM 906 CG HIS 118 14.946 87.836 8.955 1.00 0.00 C ATOM 907 ND1 HIS 118 14.143 88.848 9.440 1.00 0.00 N ATOM 908 CD2 HIS 118 15.050 88.055 7.615 1.00 0.00 C ATOM 909 CE1 HIS 118 13.801 89.619 8.379 1.00 0.00 C ATOM 910 NE2 HIS 118 14.326 89.178 7.253 1.00 0.00 N ATOM 911 N CYS 119 14.487 84.133 7.662 1.00 0.00 N ATOM 912 CA CYS 119 14.783 83.212 6.589 1.00 0.00 C ATOM 913 C CYS 119 15.242 83.819 5.236 1.00 0.00 C ATOM 914 O CYS 119 14.678 84.806 4.734 1.00 0.00 O ATOM 915 CB CYS 119 13.450 82.431 6.328 1.00 0.00 C ATOM 916 SG CYS 119 13.361 81.196 4.973 1.00 0.00 S ATOM 917 N SER 120 16.202 83.060 4.643 1.00 0.00 N ATOM 918 CA SER 120 16.756 83.341 3.294 1.00 0.00 C ATOM 919 C SER 120 17.492 82.134 2.669 1.00 0.00 C ATOM 920 O SER 120 18.391 81.573 3.335 1.00 0.00 O ATOM 921 CB SER 120 17.721 84.542 3.383 1.00 0.00 C ATOM 922 OG SER 120 18.161 85.086 2.128 1.00 0.00 O ATOM 923 N GLU 121 17.418 82.015 1.306 1.00 0.00 N ATOM 924 CA GLU 121 18.138 80.972 0.558 1.00 0.00 C ATOM 925 C GLU 121 17.876 79.557 1.180 1.00 0.00 C ATOM 926 O GLU 121 16.944 78.898 0.739 1.00 0.00 O ATOM 927 CB GLU 121 19.615 81.392 0.440 1.00 0.00 C ATOM 928 CG GLU 121 19.875 82.669 -0.266 1.00 0.00 C ATOM 929 CD GLU 121 21.367 83.002 -0.322 1.00 0.00 C ATOM 930 OE1 GLU 121 21.908 83.081 -1.455 1.00 0.00 O ATOM 931 OE2 GLU 121 21.967 83.186 0.768 1.00 0.00 O ATOM 932 N ASP 122 18.966 78.951 1.716 1.00 0.00 N ATOM 933 CA ASP 122 18.956 77.643 2.270 1.00 0.00 C ATOM 934 C ASP 122 17.638 77.381 3.082 1.00 0.00 C ATOM 935 O ASP 122 17.308 76.196 3.203 1.00 0.00 O ATOM 936 CB ASP 122 20.230 77.519 3.116 1.00 0.00 C ATOM 937 CG ASP 122 20.554 76.033 3.476 1.00 0.00 C ATOM 938 OD1 ASP 122 20.673 75.724 4.690 1.00 0.00 O ATOM 939 OD2 ASP 122 20.722 75.237 2.516 1.00 0.00 O ATOM 940 N CYS 123 17.205 78.257 4.017 1.00 0.00 N ATOM 941 CA CYS 123 15.940 77.991 4.729 1.00 0.00 C ATOM 942 C CYS 123 14.787 77.651 3.713 1.00 0.00 C ATOM 943 O CYS 123 14.134 76.618 3.918 1.00 0.00 O ATOM 944 CB CYS 123 15.601 79.091 5.675 1.00 0.00 C ATOM 945 SG CYS 123 16.645 79.265 7.106 1.00 0.00 S ATOM 946 N LEU 124 14.510 78.483 2.701 1.00 0.00 N ATOM 947 CA LEU 124 13.532 78.173 1.676 1.00 0.00 C ATOM 948 C LEU 124 13.889 76.817 0.985 1.00 0.00 C ATOM 949 O LEU 124 12.994 75.976 0.803 1.00 0.00 O ATOM 950 CB LEU 124 13.507 79.308 0.658 1.00 0.00 C ATOM 951 CG LEU 124 12.197 79.538 -0.135 1.00 0.00 C ATOM 952 CD1 LEU 124 10.993 79.739 0.796 1.00 0.00 C ATOM 953 CD2 LEU 124 11.932 78.463 -1.199 1.00 0.00 C ATOM 954 N SER 125 15.172 76.553 0.671 1.00 0.00 N ATOM 955 CA SER 125 15.686 75.321 0.082 1.00 0.00 C ATOM 956 C SER 125 15.536 74.051 0.994 1.00 0.00 C ATOM 957 O SER 125 15.232 73.009 0.419 1.00 0.00 O ATOM 958 CB SER 125 17.146 75.597 -0.204 1.00 0.00 C ATOM 959 OG SER 125 17.872 74.767 -1.030 1.00 0.00 O ATOM 960 N ARG 126 15.654 74.127 2.324 1.00 0.00 N ATOM 961 CA ARG 126 15.529 72.884 3.080 1.00 0.00 C ATOM 962 C ARG 126 14.138 72.660 3.752 1.00 0.00 C ATOM 963 O ARG 126 13.934 71.528 4.204 1.00 0.00 O ATOM 964 CB ARG 126 16.647 72.827 4.114 1.00 0.00 C ATOM 965 CG ARG 126 18.044 72.595 3.556 1.00 0.00 C ATOM 966 CD ARG 126 19.173 72.916 4.545 1.00 0.00 C ATOM 967 NE ARG 126 19.126 71.984 5.714 1.00 0.00 N ATOM 968 CZ ARG 126 20.035 72.070 6.731 1.00 0.00 C ATOM 969 NH1 ARG 126 19.963 71.187 7.769 1.00 0.00 H ATOM 970 NH2 ARG 126 21.011 73.022 6.707 1.00 0.00 H ATOM 971 N GLY 127 13.115 73.501 3.545 1.00 0.00 N ATOM 972 CA GLY 127 11.827 73.300 4.193 1.00 0.00 C ATOM 973 C GLY 127 11.661 74.014 5.563 1.00 0.00 C ATOM 974 O GLY 127 10.506 74.151 5.962 1.00 0.00 O ATOM 975 N ASP 128 12.727 74.218 6.319 1.00 0.00 N ATOM 976 CA ASP 128 12.682 74.904 7.620 1.00 0.00 C ATOM 977 C ASP 128 12.740 76.435 7.381 1.00 0.00 C ATOM 978 O ASP 128 13.830 77.001 7.197 1.00 0.00 O ATOM 979 CB ASP 128 13.833 74.373 8.501 1.00 0.00 C ATOM 980 CG ASP 128 13.730 74.835 9.953 1.00 0.00 C ATOM 981 OD1 ASP 128 14.733 75.390 10.470 1.00 0.00 O ATOM 982 OD2 ASP 128 12.661 74.586 10.567 1.00 0.00 O ATOM 983 N CYS 129 11.590 77.073 7.577 1.00 0.00 N ATOM 984 CA CYS 129 11.387 78.504 7.379 1.00 0.00 C ATOM 985 C CYS 129 10.777 79.172 8.648 1.00 0.00 C ATOM 986 O CYS 129 10.246 78.512 9.562 1.00 0.00 O ATOM 987 CB CYS 129 10.421 78.611 6.186 1.00 0.00 C ATOM 988 SG CYS 129 10.932 77.807 4.665 1.00 0.00 S ATOM 989 N CYS 130 10.816 80.504 8.642 1.00 0.00 N ATOM 990 CA CYS 130 10.219 81.321 9.702 1.00 0.00 C ATOM 991 C CYS 130 8.662 81.208 9.591 1.00 0.00 C ATOM 992 O CYS 130 8.111 80.827 8.540 1.00 0.00 O ATOM 993 CB CYS 130 10.703 82.779 9.606 1.00 0.00 C ATOM 994 SG CYS 130 10.247 83.666 8.059 1.00 0.00 S ATOM 995 N THR 131 7.992 81.448 10.741 1.00 0.00 N ATOM 996 CA THR 131 6.527 81.386 10.834 1.00 0.00 C ATOM 997 C THR 131 5.775 82.005 9.621 1.00 0.00 C ATOM 998 O THR 131 4.995 81.241 9.028 1.00 0.00 O ATOM 999 CB THR 131 6.015 81.921 12.196 1.00 0.00 C ATOM 1000 OG1 THR 131 6.641 81.373 13.382 1.00 0.00 O ATOM 1001 CG2 THR 131 4.504 81.514 12.320 1.00 0.00 C ATOM 1002 N ASN 132 6.158 83.175 9.086 1.00 0.00 N ATOM 1003 CA ASN 132 5.497 83.812 7.944 1.00 0.00 C ATOM 1004 C ASN 132 5.617 82.971 6.627 1.00 0.00 C ATOM 1005 O ASN 132 4.584 82.806 5.973 1.00 0.00 O ATOM 1006 CB ASN 132 6.105 85.199 7.743 1.00 0.00 C ATOM 1007 CG ASN 132 6.060 86.050 8.982 1.00 0.00 C ATOM 1008 OD1 ASN 132 6.787 85.764 9.938 1.00 0.00 O ATOM 1009 ND2 ASN 132 5.207 87.106 9.006 1.00 0.00 N ATOM 1010 N TYR 133 6.819 82.553 6.192 1.00 0.00 N ATOM 1011 CA TYR 133 7.084 81.798 4.955 1.00 0.00 C ATOM 1012 C TYR 133 6.268 80.476 4.806 1.00 0.00 C ATOM 1013 O TYR 133 5.621 80.344 3.765 1.00 0.00 O ATOM 1014 CB TYR 133 8.596 81.520 4.801 1.00 0.00 C ATOM 1015 CG TYR 133 9.366 82.627 4.187 1.00 0.00 C ATOM 1016 CD1 TYR 133 9.791 82.519 2.853 1.00 0.00 C ATOM 1017 CD2 TYR 133 9.706 83.778 4.919 1.00 0.00 C ATOM 1018 CE1 TYR 133 10.559 83.532 2.267 1.00 0.00 C ATOM 1019 CE2 TYR 133 10.455 84.804 4.323 1.00 0.00 C ATOM 1020 CZ TYR 133 10.876 84.683 2.993 1.00 0.00 C ATOM 1021 OH TYR 133 11.584 85.731 2.376 1.00 0.00 H ATOM 1022 N GLN 134 6.350 79.513 5.718 1.00 0.00 N ATOM 1023 CA GLN 134 5.592 78.266 5.664 1.00 0.00 C ATOM 1024 C GLN 134 4.053 78.488 5.780 1.00 0.00 C ATOM 1025 O GLN 134 3.326 77.633 5.261 1.00 0.00 O ATOM 1026 CB GLN 134 6.149 77.359 6.792 1.00 0.00 C ATOM 1027 CG GLN 134 6.074 77.820 8.241 1.00 0.00 C ATOM 1028 CD GLN 134 6.457 76.710 9.226 1.00 0.00 C ATOM 1029 OE1 GLN 134 5.586 76.017 9.758 1.00 0.00 O ATOM 1030 NE2 GLN 134 7.778 76.533 9.494 1.00 0.00 N ATOM 1031 N VAL 135 3.557 79.504 6.505 1.00 0.00 N ATOM 1032 CA VAL 135 2.074 79.662 6.603 1.00 0.00 C ATOM 1033 C VAL 135 1.463 80.592 5.494 1.00 0.00 C ATOM 1034 O VAL 135 0.255 80.862 5.592 1.00 0.00 O ATOM 1035 CB VAL 135 1.683 80.201 7.982 1.00 0.00 C ATOM 1036 CG1 VAL 135 2.008 81.690 8.175 1.00 0.00 C ATOM 1037 CG2 VAL 135 0.231 79.852 8.336 1.00 0.00 C ATOM 1038 N VAL 136 2.141 80.868 4.359 1.00 0.00 N ATOM 1039 CA VAL 136 1.592 81.712 3.326 1.00 0.00 C ATOM 1040 C VAL 136 1.441 80.923 2.018 1.00 0.00 C ATOM 1041 O VAL 136 2.445 80.447 1.476 1.00 0.00 O ATOM 1042 CB VAL 136 2.381 82.995 3.359 1.00 0.00 C ATOM 1043 CG1 VAL 136 2.787 83.541 2.071 1.00 0.00 C ATOM 1044 CG2 VAL 136 1.750 84.026 4.326 1.00 0.00 C ATOM 1045 N CYS 137 0.186 80.579 1.687 1.00 0.00 N ATOM 1046 CA CYS 137 -0.140 79.826 0.512 1.00 0.00 C ATOM 1047 C CYS 137 -0.125 80.666 -0.824 1.00 0.00 C ATOM 1048 O CYS 137 0.317 80.091 -1.820 1.00 0.00 O ATOM 1049 CB CYS 137 -1.506 79.193 0.781 1.00 0.00 C ATOM 1050 SG CYS 137 -2.839 80.238 1.450 1.00 0.00 S ATOM 1051 N LYS 138 -0.428 81.957 -0.816 1.00 0.00 N ATOM 1052 CA LYS 138 -0.552 82.815 -1.966 1.00 0.00 C ATOM 1053 C LYS 138 -0.304 84.286 -1.532 1.00 0.00 C ATOM 1054 O LYS 138 0.611 84.542 -0.741 1.00 0.00 O ATOM 1055 CB LYS 138 -1.960 82.511 -2.596 1.00 0.00 C ATOM 1056 CG LYS 138 -3.185 82.785 -1.703 1.00 0.00 C ATOM 1057 CD LYS 138 -4.530 82.751 -2.458 1.00 0.00 C ATOM 1058 CE LYS 138 -4.909 81.412 -3.102 1.00 0.00 C ATOM 1059 NZ LYS 138 -5.149 80.387 -2.067 1.00 0.00 N ATOM 1060 N GLY 139 -0.760 85.196 -2.363 1.00 0.00 N ATOM 1061 CA GLY 139 -0.681 86.603 -2.155 1.00 0.00 C ATOM 1062 C GLY 139 0.755 87.176 -2.151 1.00 0.00 C ATOM 1063 O GLY 139 1.397 87.102 -3.198 1.00 0.00 O ATOM 1064 N GLU 140 1.160 87.930 -1.106 1.00 0.00 N ATOM 1065 CA GLU 140 2.481 88.592 -1.098 1.00 0.00 C ATOM 1066 C GLU 140 3.598 87.617 -1.541 1.00 0.00 C ATOM 1067 O GLU 140 3.806 86.563 -0.886 1.00 0.00 O ATOM 1068 CB GLU 140 2.740 89.123 0.313 1.00 0.00 C ATOM 1069 CG GLU 140 1.788 90.227 0.783 1.00 0.00 C ATOM 1070 CD GLU 140 2.080 90.710 2.204 1.00 0.00 C ATOM 1071 OE1 GLU 140 2.006 89.865 3.134 1.00 0.00 O ATOM 1072 OE2 GLU 140 2.367 91.922 2.365 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 345 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 70.43 37.5 88 100.0 88 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 74.67 35.5 62 100.0 62 ARMSMC BURIED . . . . . . . . 59.13 42.3 26 100.0 26 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 99.39 25.6 39 100.0 39 ARMSSC1 RELIABLE SIDE CHAINS . 100.18 27.8 36 100.0 36 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 92.40 30.8 26 100.0 26 ARMSSC1 BURIED . . . . . . . . 112.08 15.4 13 100.0 13 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 83.58 43.5 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 76.43 50.0 18 100.0 18 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 96.65 31.2 16 100.0 16 ARMSSC2 BURIED . . . . . . . . 40.02 71.4 7 100.0 7 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 88.95 7.7 13 100.0 13 ARMSSC3 RELIABLE SIDE CHAINS . 91.16 8.3 12 100.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 85.69 10.0 10 100.0 10 ARMSSC3 BURIED . . . . . . . . 99.04 0.0 3 100.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 83.64 50.0 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 83.64 50.0 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 101.47 25.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 19.81 100.0 2 100.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.47 (Number of atoms: 45) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.47 45 100.0 45 CRMSCA CRN = ALL/NP . . . . . 0.2106 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 10.09 32 100.0 32 CRMSCA BURIED . . . . . . . . 7.76 13 100.0 13 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.51 221 100.0 221 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 10.08 156 100.0 156 CRMSMC BURIED . . . . . . . . 7.97 65 100.0 65 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 12.23 165 100.0 165 CRMSSC RELIABLE SIDE CHAINS . 12.62 145 100.0 145 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 12.87 112 100.0 112 CRMSSC BURIED . . . . . . . . 10.75 53 100.0 53 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.82 345 100.0 345 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 11.37 240 100.0 240 CRMSALL BURIED . . . . . . . . 9.46 105 100.0 105 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.528 1.000 0.500 45 100.0 45 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 9.298 1.000 0.500 32 100.0 32 ERRCA BURIED . . . . . . . . 6.632 1.000 0.500 13 100.0 13 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.536 1.000 0.500 221 100.0 221 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 9.249 1.000 0.500 156 100.0 156 ERRMC BURIED . . . . . . . . 6.825 1.000 0.500 65 100.0 65 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.836 1.000 0.500 165 100.0 165 ERRSC RELIABLE SIDE CHAINS . 11.206 1.000 0.500 145 100.0 145 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 11.720 1.000 0.500 112 100.0 112 ERRSC BURIED . . . . . . . . 8.968 1.000 0.500 53 100.0 53 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.582 1.000 0.500 345 100.0 345 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 10.314 1.000 0.500 240 100.0 240 ERRALL BURIED . . . . . . . . 7.909 1.000 0.500 105 100.0 105 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 3 13 27 45 45 DISTCA CA (P) 0.00 0.00 6.67 28.89 60.00 45 DISTCA CA (RMS) 0.00 0.00 2.88 4.07 5.85 DISTCA ALL (N) 0 2 12 75 195 345 345 DISTALL ALL (P) 0.00 0.58 3.48 21.74 56.52 345 DISTALL ALL (RMS) 0.00 1.64 2.45 3.81 6.26 DISTALL END of the results output