####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS429_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS429_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 68 - 89 4.93 10.76 LCS_AVERAGE: 50.31 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 75 - 88 1.68 10.09 LCS_AVERAGE: 23.38 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 77 - 87 0.88 10.51 LCS_AVERAGE: 17.06 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 3 7 15 1 3 5 5 6 15 17 18 19 20 21 23 26 27 29 30 31 32 33 35 LCS_GDT S 57 S 57 3 7 18 0 3 5 5 6 7 8 10 19 20 21 23 26 27 29 30 31 32 33 35 LCS_GDT C 58 C 58 5 7 18 4 5 9 13 15 16 17 18 19 20 21 23 26 27 29 30 31 32 33 35 LCS_GDT K 59 K 59 5 7 18 4 5 6 6 6 7 9 10 19 20 21 23 25 27 28 29 30 32 33 34 LCS_GDT G 60 G 60 5 7 18 5 11 12 13 15 16 17 18 19 20 21 23 26 27 29 30 31 32 33 35 LCS_GDT R 61 R 61 5 7 18 4 5 6 6 11 14 17 17 19 19 21 23 26 27 29 30 31 32 33 35 LCS_GDT C 62 C 62 5 7 18 4 5 6 6 6 11 12 14 18 19 21 23 26 27 29 30 31 32 33 35 LCS_GDT F 63 F 63 3 6 18 4 4 5 5 7 10 10 11 14 15 21 23 26 27 29 30 31 32 33 35 LCS_GDT E 64 E 64 5 6 18 4 4 5 5 7 10 10 12 18 19 21 23 26 27 29 30 31 32 33 35 LCS_GDT L 65 L 65 5 6 18 3 4 9 9 12 13 13 15 18 19 21 23 24 27 28 29 30 32 33 35 LCS_GDT Q 66 Q 66 5 6 18 5 11 12 13 15 16 17 18 19 20 21 23 26 27 29 30 31 32 33 35 LCS_GDT E 67 E 67 5 6 18 4 4 5 5 7 10 10 11 14 17 21 23 26 27 29 30 31 32 33 35 LCS_GDT V 68 V 68 5 6 22 3 4 5 5 6 10 10 11 14 17 21 23 25 27 29 30 31 32 33 35 LCS_GDT G 69 G 69 3 5 22 3 3 4 4 7 10 11 14 16 18 21 23 25 27 29 30 31 32 33 35 LCS_GDT P 70 P 70 4 5 22 1 3 4 4 6 6 7 10 14 17 19 20 24 25 26 27 29 31 32 35 LCS_GDT P 71 P 71 4 5 22 3 3 4 4 6 6 6 9 12 16 19 20 21 23 26 27 29 31 31 31 LCS_GDT D 72 D 72 4 5 22 3 3 4 5 10 11 11 12 14 17 19 20 24 25 26 27 29 31 32 32 LCS_GDT C 73 C 73 4 5 22 3 3 4 5 7 10 10 11 14 17 19 20 24 25 26 27 29 31 32 34 LCS_GDT R 74 R 74 3 5 22 3 3 3 5 7 10 13 17 19 20 21 23 26 27 29 30 31 32 33 35 LCS_GDT C 75 C 75 3 14 22 3 4 11 13 15 16 17 18 19 20 21 23 26 27 29 30 31 32 33 35 LCS_GDT D 76 D 76 4 14 22 4 4 5 10 11 13 16 18 19 20 21 23 26 27 29 30 31 32 33 35 LCS_GDT N 77 N 77 11 14 22 4 9 11 13 15 16 17 18 19 20 21 23 26 27 29 30 31 32 33 35 LCS_GDT L 78 L 78 11 14 22 8 11 12 13 15 16 17 18 19 20 21 23 26 27 29 30 31 32 33 35 LCS_GDT C 79 C 79 11 14 22 8 11 12 13 15 16 17 18 19 20 21 23 26 27 29 30 31 32 33 35 LCS_GDT K 80 K 80 11 14 22 8 11 12 13 15 16 17 18 19 20 21 23 26 27 29 30 31 32 33 35 LCS_GDT S 81 S 81 11 14 22 8 11 12 13 15 16 17 18 19 20 21 23 26 27 29 30 31 32 33 35 LCS_GDT Y 82 Y 82 11 14 22 8 11 12 13 15 16 17 18 19 20 21 23 26 27 29 30 31 32 33 35 LCS_GDT S 83 S 83 11 14 22 8 11 12 13 15 16 17 18 19 20 21 23 26 27 29 30 31 32 33 35 LCS_GDT S 84 S 84 11 14 22 8 11 12 13 15 16 17 18 19 20 21 23 26 27 29 30 31 32 33 35 LCS_GDT C 85 C 85 11 14 22 5 10 12 13 15 16 17 18 19 20 21 23 26 27 29 30 31 32 33 35 LCS_GDT C 86 C 86 11 14 22 8 11 12 13 15 16 17 18 19 20 21 23 26 27 29 30 31 32 33 35 LCS_GDT H 87 H 87 11 14 22 5 11 12 13 15 16 17 18 19 20 21 23 26 27 28 30 31 32 33 34 LCS_GDT D 88 D 88 8 14 22 3 8 9 11 15 16 17 18 19 20 21 23 26 27 29 30 31 32 33 35 LCS_GDT F 89 F 89 8 9 22 4 8 9 9 10 11 11 13 18 19 21 23 26 27 29 30 31 32 33 35 LCS_GDT D 90 D 90 8 9 19 4 8 9 9 10 11 11 12 14 17 19 20 24 25 29 30 31 32 33 35 LCS_GDT E 91 E 91 8 9 19 4 8 9 9 10 11 11 14 15 17 21 23 25 27 29 30 31 32 33 35 LCS_GDT L 92 L 92 8 9 19 4 8 9 9 10 11 11 12 14 17 19 21 25 27 29 30 31 32 33 35 LCS_GDT C 93 C 93 8 9 17 4 8 9 9 10 11 11 12 14 17 19 20 24 25 27 30 31 32 33 35 LCS_GDT L 94 L 94 8 9 17 4 8 9 9 10 11 11 12 13 17 18 19 24 25 26 27 28 29 32 35 LCS_GDT K 95 K 95 8 9 17 4 8 9 9 10 11 11 12 14 17 18 19 23 25 26 27 28 31 32 35 LCS_AVERAGE LCS_A: 30.25 ( 17.06 23.38 50.31 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 11 12 13 15 16 17 18 19 20 21 23 26 27 29 30 31 32 33 35 GDT PERCENT_AT 20.00 27.50 30.00 32.50 37.50 40.00 42.50 45.00 47.50 50.00 52.50 57.50 65.00 67.50 72.50 75.00 77.50 80.00 82.50 87.50 GDT RMS_LOCAL 0.30 0.70 0.75 0.89 1.28 1.53 1.79 2.07 2.32 2.62 2.84 3.30 4.18 4.25 5.13 5.24 5.43 5.54 5.69 6.66 GDT RMS_ALL_AT 10.41 10.38 10.39 10.42 10.25 10.01 9.92 9.85 9.78 9.91 9.83 9.62 9.33 9.60 8.22 8.23 8.12 8.18 8.27 7.73 # Checking swapping # possible swapping detected: Y 82 Y 82 # possible swapping detected: D 88 D 88 # possible swapping detected: F 89 F 89 # possible swapping detected: D 90 D 90 # possible swapping detected: E 91 E 91 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 3.845 0 0.213 0.213 5.745 30.595 30.595 LGA S 57 S 57 6.454 0 0.038 0.611 10.468 25.357 17.143 LGA C 58 C 58 2.188 0 0.617 0.700 3.969 50.357 50.317 LGA K 59 K 59 5.562 0 0.577 0.981 9.967 33.333 17.196 LGA G 60 G 60 0.668 0 0.265 0.265 3.179 67.500 67.500 LGA R 61 R 61 5.415 0 0.337 1.628 11.082 23.095 15.584 LGA C 62 C 62 9.046 0 0.102 0.258 10.610 5.357 3.571 LGA F 63 F 63 10.084 0 0.283 1.129 19.186 1.190 0.433 LGA E 64 E 64 8.759 0 0.370 0.627 13.159 1.429 0.794 LGA L 65 L 65 8.660 0 0.065 0.631 14.312 8.333 4.226 LGA Q 66 Q 66 2.134 0 0.152 1.122 6.856 47.262 41.958 LGA E 67 E 67 7.010 0 0.580 1.537 10.947 14.286 6.984 LGA V 68 V 68 10.327 0 0.536 0.621 13.853 0.714 0.408 LGA G 69 G 69 12.769 0 0.296 0.296 13.137 0.000 0.000 LGA P 70 P 70 16.965 0 0.108 0.310 19.480 0.000 0.000 LGA P 71 P 71 17.068 0 0.329 0.464 20.687 0.000 0.000 LGA D 72 D 72 16.028 3 0.624 0.629 17.185 0.000 0.000 LGA C 73 C 73 13.406 0 0.636 1.038 16.803 0.000 0.000 LGA R 74 R 74 6.333 0 0.626 1.286 13.074 20.357 10.952 LGA C 75 C 75 1.501 0 0.287 0.828 3.272 61.429 60.079 LGA D 76 D 76 4.526 0 0.570 0.880 9.220 47.143 26.786 LGA N 77 N 77 1.666 0 0.154 0.905 4.282 73.333 66.667 LGA L 78 L 78 1.667 0 0.246 1.296 7.264 81.548 59.226 LGA C 79 C 79 0.899 0 0.065 0.776 2.927 88.214 83.413 LGA K 80 K 80 0.817 0 0.022 0.911 6.561 85.952 64.550 LGA S 81 S 81 1.452 0 0.028 0.088 1.601 79.286 77.143 LGA Y 82 Y 82 1.181 0 0.129 0.659 2.318 79.286 77.222 LGA S 83 S 83 0.871 0 0.271 0.692 3.876 92.857 82.698 LGA S 84 S 84 0.629 0 0.374 0.687 3.223 90.595 82.302 LGA C 85 C 85 1.186 0 0.165 0.807 2.309 79.286 77.222 LGA C 86 C 86 1.397 0 0.215 0.240 2.165 77.143 75.794 LGA H 87 H 87 2.435 0 0.126 1.158 6.077 66.786 45.000 LGA D 88 D 88 2.967 0 0.469 0.869 6.888 40.357 33.214 LGA F 89 F 89 7.919 0 0.082 1.444 14.074 7.143 2.857 LGA D 90 D 90 14.105 0 0.139 1.110 16.496 0.000 0.000 LGA E 91 E 91 12.887 0 0.138 1.139 16.139 0.000 1.693 LGA L 92 L 92 13.487 0 0.175 1.459 17.436 0.000 0.000 LGA C 93 C 93 16.954 0 0.033 0.076 21.697 0.000 0.000 LGA L 94 L 94 22.032 0 0.223 0.777 24.834 0.000 0.000 LGA K 95 K 95 24.748 0 0.078 1.211 28.652 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 7.567 7.458 8.885 34.488 29.588 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 18 2.07 45.000 39.583 0.830 LGA_LOCAL RMSD: 2.070 Number of atoms: 18 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.854 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 7.567 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.349719 * X + -0.587282 * Y + -0.729929 * Z + 68.773209 Y_new = 0.287847 * X + -0.674084 * Y + 0.680261 * Z + 46.379547 Z_new = -0.891539 * X + -0.448008 * Y + -0.066692 * Z + 26.698612 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.688657 1.100731 -1.718575 [DEG: 39.4571 63.0672 -98.4671 ] ZXZ: -2.320988 1.637538 -2.036451 [DEG: -132.9828 93.8240 -116.6800 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS429_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS429_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 18 2.07 39.583 7.57 REMARK ---------------------------------------------------------- MOLECULE T0543TS429_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REFINED REMARK PARENT N/A ATOM 422 N GLY 56 31.495 70.109 21.894 1.00 0.00 N ATOM 423 CA GLY 56 31.973 70.209 20.525 1.00 0.00 C ATOM 424 C GLY 56 30.890 69.950 19.430 1.00 0.00 C ATOM 425 O GLY 56 31.178 70.335 18.293 1.00 0.00 O ATOM 426 N SER 57 29.678 69.424 19.741 1.00 0.00 N ATOM 427 CA SER 57 28.728 69.205 18.683 1.00 0.00 C ATOM 428 C SER 57 27.970 70.515 18.316 1.00 0.00 C ATOM 429 O SER 57 27.419 71.183 19.199 1.00 0.00 O ATOM 430 CB SER 57 27.745 68.077 19.030 1.00 0.00 C ATOM 431 OG SER 57 26.942 68.173 20.244 1.00 0.00 O ATOM 432 N CYS 58 28.336 70.988 17.118 1.00 0.00 N ATOM 433 CA CYS 58 27.739 72.157 16.503 1.00 0.00 C ATOM 434 C CYS 58 27.022 71.649 15.236 1.00 0.00 C ATOM 435 O CYS 58 27.627 70.936 14.425 1.00 0.00 O ATOM 436 CB CYS 58 28.754 73.301 16.256 1.00 0.00 C ATOM 437 SG CYS 58 27.931 74.863 15.863 1.00 0.00 S ATOM 438 N LYS 59 25.714 71.943 15.116 1.00 0.00 N ATOM 439 CA LYS 59 24.973 71.526 13.931 1.00 0.00 C ATOM 440 C LYS 59 25.759 71.675 12.606 1.00 0.00 C ATOM 441 O LYS 59 25.896 70.635 11.946 1.00 0.00 O ATOM 442 CB LYS 59 23.641 72.305 13.973 1.00 0.00 C ATOM 443 CG LYS 59 23.710 73.840 14.019 1.00 0.00 C ATOM 444 CD LYS 59 22.339 74.470 14.330 1.00 0.00 C ATOM 445 CE LYS 59 22.359 75.991 14.500 1.00 0.00 C ATOM 446 NZ LYS 59 22.600 76.652 13.202 1.00 0.00 N ATOM 447 N GLY 60 26.216 72.876 12.175 1.00 0.00 N ATOM 448 CA GLY 60 26.931 72.993 10.932 1.00 0.00 C ATOM 449 C GLY 60 28.423 72.564 10.897 1.00 0.00 C ATOM 450 O GLY 60 28.876 71.868 9.988 1.00 0.00 O ATOM 451 N ARG 61 29.188 73.009 11.922 1.00 0.00 N ATOM 452 CA ARG 61 30.563 72.731 12.143 1.00 0.00 C ATOM 453 C ARG 61 30.834 71.223 12.124 1.00 0.00 C ATOM 454 O ARG 61 31.642 70.789 11.291 1.00 0.00 O ATOM 455 CB ARG 61 31.024 73.459 13.392 1.00 0.00 C ATOM 456 CG ARG 61 31.416 74.906 13.339 1.00 0.00 C ATOM 457 CD ARG 61 30.238 75.885 13.283 1.00 0.00 C ATOM 458 NE ARG 61 30.810 77.271 13.379 1.00 0.00 N ATOM 459 CZ ARG 61 30.036 78.396 13.350 1.00 0.00 C ATOM 460 NH1 ARG 61 28.686 78.299 13.213 1.00 0.00 H ATOM 461 NH2 ARG 61 30.636 79.619 13.446 1.00 0.00 H ATOM 462 N CYS 62 30.200 70.406 12.938 1.00 0.00 N ATOM 463 CA CYS 62 30.420 68.979 12.929 1.00 0.00 C ATOM 464 C CYS 62 29.069 68.324 12.413 1.00 0.00 C ATOM 465 O CYS 62 28.104 68.287 13.205 1.00 0.00 O ATOM 466 CB CYS 62 30.639 68.583 14.385 1.00 0.00 C ATOM 467 SG CYS 62 31.840 69.618 15.244 1.00 0.00 S ATOM 468 N PHE 63 28.890 67.871 11.133 1.00 0.00 N ATOM 469 CA PHE 63 27.702 67.263 10.605 1.00 0.00 C ATOM 470 C PHE 63 27.662 65.753 10.740 1.00 0.00 C ATOM 471 O PHE 63 26.600 65.157 10.913 1.00 0.00 O ATOM 472 CB PHE 63 27.588 67.775 9.145 1.00 0.00 C ATOM 473 CG PHE 63 28.830 67.741 8.291 1.00 0.00 C ATOM 474 CD1 PHE 63 29.135 66.666 7.438 1.00 0.00 C ATOM 475 CD2 PHE 63 29.724 68.830 8.340 1.00 0.00 C ATOM 476 CE1 PHE 63 30.326 66.649 6.700 1.00 0.00 C ATOM 477 CE2 PHE 63 30.917 68.817 7.606 1.00 0.00 C ATOM 478 CZ PHE 63 31.220 67.722 6.791 1.00 0.00 C ATOM 479 N GLU 64 28.752 65.025 10.353 1.00 0.00 N ATOM 480 CA GLU 64 28.802 63.556 10.472 1.00 0.00 C ATOM 481 C GLU 64 29.493 63.023 11.788 1.00 0.00 C ATOM 482 O GLU 64 30.621 62.509 11.672 1.00 0.00 O ATOM 483 CB GLU 64 29.383 62.906 9.187 1.00 0.00 C ATOM 484 CG GLU 64 29.169 61.373 9.136 1.00 0.00 C ATOM 485 CD GLU 64 29.493 60.791 7.760 1.00 0.00 C ATOM 486 OE1 GLU 64 28.772 61.148 6.790 1.00 0.00 O ATOM 487 OE2 GLU 64 30.453 59.983 7.668 1.00 0.00 O ATOM 488 N LEU 65 28.984 63.298 12.964 1.00 0.00 N ATOM 489 CA LEU 65 29.590 62.759 14.174 1.00 0.00 C ATOM 490 C LEU 65 28.667 61.847 14.980 1.00 0.00 C ATOM 491 O LEU 65 29.196 60.845 15.502 1.00 0.00 O ATOM 492 CB LEU 65 30.040 63.936 15.115 1.00 0.00 C ATOM 493 CG LEU 65 30.883 63.540 16.347 1.00 0.00 C ATOM 494 CD1 LEU 65 31.085 64.762 17.248 1.00 0.00 C ATOM 495 CD2 LEU 65 32.238 62.895 16.006 1.00 0.00 C ATOM 496 N GLN 66 27.368 62.002 14.882 1.00 0.00 N ATOM 497 CA GLN 66 26.382 61.303 15.618 1.00 0.00 C ATOM 498 C GLN 66 25.295 60.859 14.640 1.00 0.00 C ATOM 499 O GLN 66 24.495 61.668 14.094 1.00 0.00 O ATOM 500 CB GLN 66 25.767 62.220 16.705 1.00 0.00 C ATOM 501 CG GLN 66 26.741 62.622 17.819 1.00 0.00 C ATOM 502 CD GLN 66 26.024 63.393 18.936 1.00 0.00 C ATOM 503 OE1 GLN 66 24.826 63.218 19.179 1.00 0.00 O ATOM 504 NE2 GLN 66 26.781 64.270 19.645 1.00 0.00 N ATOM 505 N GLU 67 25.124 59.542 14.651 1.00 0.00 N ATOM 506 CA GLU 67 24.180 58.919 13.756 1.00 0.00 C ATOM 507 C GLU 67 22.696 59.167 14.133 1.00 0.00 C ATOM 508 O GLU 67 21.986 59.669 13.281 1.00 0.00 O ATOM 509 CB GLU 67 24.453 57.418 13.590 1.00 0.00 C ATOM 510 CG GLU 67 23.672 56.688 12.479 1.00 0.00 C ATOM 511 CD GLU 67 24.141 57.072 11.070 1.00 0.00 C ATOM 512 OE1 GLU 67 25.341 56.842 10.773 1.00 0.00 O ATOM 513 OE2 GLU 67 23.296 57.571 10.283 1.00 0.00 O ATOM 514 N VAL 68 22.248 58.832 15.327 1.00 0.00 N ATOM 515 CA VAL 68 20.841 58.998 15.761 1.00 0.00 C ATOM 516 C VAL 68 20.332 60.430 16.077 1.00 0.00 C ATOM 517 O VAL 68 19.377 60.823 15.392 1.00 0.00 O ATOM 518 CB VAL 68 20.593 58.076 16.976 1.00 0.00 C ATOM 519 CG1 VAL 68 19.095 58.144 17.420 1.00 0.00 C ATOM 520 CG2 VAL 68 20.951 56.627 16.632 1.00 0.00 C ATOM 521 N GLY 69 20.843 61.224 17.003 1.00 0.00 N ATOM 522 CA GLY 69 20.254 62.574 17.131 1.00 0.00 C ATOM 523 C GLY 69 20.615 63.578 15.953 1.00 0.00 C ATOM 524 O GLY 69 21.835 63.665 15.709 1.00 0.00 O ATOM 525 N PRO 70 19.698 64.197 15.066 1.00 0.00 N ATOM 526 CA PRO 70 20.182 65.011 14.025 1.00 0.00 C ATOM 527 C PRO 70 21.001 66.310 14.511 1.00 0.00 C ATOM 528 O PRO 70 21.008 66.531 15.723 1.00 0.00 O ATOM 529 CB PRO 70 19.024 65.516 13.088 1.00 0.00 C ATOM 530 CG PRO 70 17.974 65.654 14.202 1.00 0.00 C ATOM 531 CD PRO 70 18.260 64.520 15.199 1.00 0.00 C ATOM 532 N PRO 71 21.791 67.008 13.606 1.00 0.00 N ATOM 533 CA PRO 71 22.553 68.111 14.093 1.00 0.00 C ATOM 534 C PRO 71 21.788 69.049 15.092 1.00 0.00 C ATOM 535 O PRO 71 22.495 69.424 16.028 1.00 0.00 O ATOM 536 CB PRO 71 23.223 68.854 12.908 1.00 0.00 C ATOM 537 CG PRO 71 22.439 68.307 11.710 1.00 0.00 C ATOM 538 CD PRO 71 21.601 67.141 12.140 1.00 0.00 C ATOM 539 N ASP 72 20.585 69.658 14.856 1.00 0.00 N ATOM 540 CA ASP 72 20.051 70.644 15.827 1.00 0.00 C ATOM 541 C ASP 72 19.792 70.056 17.262 1.00 0.00 C ATOM 542 O ASP 72 20.227 70.685 18.218 1.00 0.00 O ATOM 543 CB ASP 72 18.780 71.238 15.223 1.00 0.00 C ATOM 544 CG ASP 72 18.902 71.833 13.863 1.00 0.00 C ATOM 545 OD1 ASP 72 19.040 71.017 12.913 1.00 0.00 O ATOM 546 OD2 ASP 72 18.854 73.081 13.727 1.00 0.00 O ATOM 547 N CYS 73 18.910 69.043 17.417 1.00 0.00 N ATOM 548 CA CYS 73 18.602 68.373 18.687 1.00 0.00 C ATOM 549 C CYS 73 19.881 67.971 19.460 1.00 0.00 C ATOM 550 O CYS 73 19.779 67.955 20.676 1.00 0.00 O ATOM 551 CB CYS 73 17.752 67.139 18.328 1.00 0.00 C ATOM 552 SG CYS 73 16.112 67.563 17.752 1.00 0.00 S ATOM 553 N ARG 74 20.840 67.203 18.867 1.00 0.00 N ATOM 554 CA ARG 74 22.055 66.849 19.586 1.00 0.00 C ATOM 555 C ARG 74 22.748 68.135 20.169 1.00 0.00 C ATOM 556 O ARG 74 23.273 68.038 21.283 1.00 0.00 O ATOM 557 CB ARG 74 23.013 65.952 18.720 1.00 0.00 C ATOM 558 CG ARG 74 23.651 66.607 17.491 1.00 0.00 C ATOM 559 CD ARG 74 24.513 65.562 16.774 1.00 0.00 C ATOM 560 NE ARG 74 25.185 66.182 15.588 1.00 0.00 N ATOM 561 CZ ARG 74 25.049 65.723 14.306 1.00 0.00 C ATOM 562 NH1 ARG 74 25.889 66.206 13.347 1.00 0.00 H ATOM 563 NH2 ARG 74 24.102 64.800 13.973 1.00 0.00 H ATOM 564 N CYS 75 22.974 69.214 19.391 1.00 0.00 N ATOM 565 CA CYS 75 23.653 70.415 19.860 1.00 0.00 C ATOM 566 C CYS 75 23.012 71.043 21.169 1.00 0.00 C ATOM 567 O CYS 75 23.812 71.560 21.962 1.00 0.00 O ATOM 568 CB CYS 75 23.615 71.489 18.753 1.00 0.00 C ATOM 569 SG CYS 75 24.633 72.989 19.122 1.00 0.00 S ATOM 570 N ASP 76 21.777 71.460 21.170 1.00 0.00 N ATOM 571 CA ASP 76 21.090 72.084 22.281 1.00 0.00 C ATOM 572 C ASP 76 20.216 71.162 23.088 1.00 0.00 C ATOM 573 O ASP 76 20.307 71.245 24.318 1.00 0.00 O ATOM 574 CB ASP 76 20.332 73.352 21.779 1.00 0.00 C ATOM 575 CG ASP 76 19.785 73.366 20.361 1.00 0.00 C ATOM 576 OD1 ASP 76 20.294 74.177 19.541 1.00 0.00 O ATOM 577 OD2 ASP 76 18.843 72.579 20.088 1.00 0.00 O ATOM 578 N ASN 77 19.433 70.257 22.506 1.00 0.00 N ATOM 579 CA ASN 77 18.571 69.386 23.289 1.00 0.00 C ATOM 580 C ASN 77 19.325 68.351 24.163 1.00 0.00 C ATOM 581 O ASN 77 19.136 68.419 25.387 1.00 0.00 O ATOM 582 CB ASN 77 17.442 68.744 22.491 1.00 0.00 C ATOM 583 CG ASN 77 16.599 69.644 21.648 1.00 0.00 C ATOM 584 OD1 ASN 77 16.471 69.448 20.437 1.00 0.00 O ATOM 585 ND2 ASN 77 15.970 70.658 22.294 1.00 0.00 N ATOM 586 N LEU 78 20.152 67.461 23.610 1.00 0.00 N ATOM 587 CA LEU 78 20.936 66.561 24.409 1.00 0.00 C ATOM 588 C LEU 78 22.094 67.304 25.184 1.00 0.00 C ATOM 589 O LEU 78 22.318 66.966 26.344 1.00 0.00 O ATOM 590 CB LEU 78 21.505 65.428 23.560 1.00 0.00 C ATOM 591 CG LEU 78 22.110 64.230 24.352 1.00 0.00 C ATOM 592 CD1 LEU 78 23.011 63.376 23.442 1.00 0.00 C ATOM 593 CD2 LEU 78 20.999 63.367 24.976 1.00 0.00 C ATOM 594 N CYS 79 22.937 68.113 24.517 1.00 0.00 N ATOM 595 CA CYS 79 24.011 68.882 25.157 1.00 0.00 C ATOM 596 C CYS 79 23.518 69.489 26.525 1.00 0.00 C ATOM 597 O CYS 79 24.280 69.340 27.491 1.00 0.00 O ATOM 598 CB CYS 79 24.502 69.975 24.212 1.00 0.00 C ATOM 599 SG CYS 79 25.872 69.489 23.147 1.00 0.00 S ATOM 600 N LYS 80 22.417 70.255 26.552 1.00 0.00 N ATOM 601 CA LYS 80 21.936 70.910 27.772 1.00 0.00 C ATOM 602 C LYS 80 21.746 69.850 28.914 1.00 0.00 C ATOM 603 O LYS 80 22.115 70.166 30.044 1.00 0.00 O ATOM 604 CB LYS 80 20.650 71.689 27.454 1.00 0.00 C ATOM 605 CG LYS 80 20.269 72.782 28.481 1.00 0.00 C ATOM 606 CD LYS 80 19.513 72.301 29.733 1.00 0.00 C ATOM 607 CE LYS 80 19.021 73.459 30.602 1.00 0.00 C ATOM 608 NZ LYS 80 18.302 72.931 31.775 1.00 0.00 N ATOM 609 N SER 81 20.908 68.794 28.725 1.00 0.00 N ATOM 610 CA SER 81 20.696 67.760 29.713 1.00 0.00 C ATOM 611 C SER 81 22.021 67.302 30.391 1.00 0.00 C ATOM 612 O SER 81 21.999 67.125 31.610 1.00 0.00 O ATOM 613 CB SER 81 19.898 66.632 29.002 1.00 0.00 C ATOM 614 OG SER 81 18.524 66.904 28.632 1.00 0.00 O ATOM 615 N TYR 82 23.138 67.138 29.644 1.00 0.00 N ATOM 616 CA TYR 82 24.426 66.679 30.169 1.00 0.00 C ATOM 617 C TYR 82 25.441 67.815 30.510 1.00 0.00 C ATOM 618 O TYR 82 26.629 67.536 30.637 1.00 0.00 O ATOM 619 CB TYR 82 25.049 65.716 29.159 1.00 0.00 C ATOM 620 CG TYR 82 24.270 64.503 28.786 1.00 0.00 C ATOM 621 CD1 TYR 82 23.427 63.835 29.697 1.00 0.00 C ATOM 622 CD2 TYR 82 24.410 63.974 27.490 1.00 0.00 C ATOM 623 CE1 TYR 82 22.728 62.682 29.311 1.00 0.00 C ATOM 624 CE2 TYR 82 23.725 62.815 27.109 1.00 0.00 C ATOM 625 CZ TYR 82 22.877 62.172 28.017 1.00 0.00 C ATOM 626 OH TYR 82 22.184 61.009 27.622 1.00 0.00 H ATOM 627 N SER 83 24.974 69.064 30.646 1.00 0.00 N ATOM 628 CA SER 83 25.746 70.253 30.974 1.00 0.00 C ATOM 629 C SER 83 26.994 70.484 30.092 1.00 0.00 C ATOM 630 O SER 83 27.913 71.204 30.529 1.00 0.00 O ATOM 631 CB SER 83 26.125 70.135 32.460 1.00 0.00 C ATOM 632 OG SER 83 27.118 69.201 32.823 1.00 0.00 O ATOM 633 N SER 84 26.962 70.147 28.828 1.00 0.00 N ATOM 634 CA SER 84 28.077 70.347 27.932 1.00 0.00 C ATOM 635 C SER 84 27.543 71.077 26.692 1.00 0.00 C ATOM 636 O SER 84 27.260 70.421 25.701 1.00 0.00 O ATOM 637 CB SER 84 28.672 68.983 27.636 1.00 0.00 C ATOM 638 OG SER 84 29.417 68.313 28.648 1.00 0.00 O ATOM 639 N CYS 85 27.784 72.372 26.635 1.00 0.00 N ATOM 640 CA CYS 85 27.281 73.140 25.520 1.00 0.00 C ATOM 641 C CYS 85 28.312 74.206 25.128 1.00 0.00 C ATOM 642 O CYS 85 28.665 75.067 25.953 1.00 0.00 O ATOM 643 CB CYS 85 25.891 73.736 25.856 1.00 0.00 C ATOM 644 SG CYS 85 24.969 74.274 24.350 1.00 0.00 S ATOM 645 N CYS 86 28.539 74.298 23.840 1.00 0.00 N ATOM 646 CA CYS 86 29.450 75.249 23.278 1.00 0.00 C ATOM 647 C CYS 86 28.744 76.571 23.000 1.00 0.00 C ATOM 648 O CYS 86 27.964 76.694 22.031 1.00 0.00 O ATOM 649 CB CYS 86 30.163 74.749 22.028 1.00 0.00 C ATOM 650 SG CYS 86 31.283 73.381 22.304 1.00 0.00 S ATOM 651 N HIS 87 29.111 77.568 23.799 1.00 0.00 N ATOM 652 CA HIS 87 28.628 78.936 23.644 1.00 0.00 C ATOM 653 C HIS 87 29.245 79.564 22.321 1.00 0.00 C ATOM 654 O HIS 87 28.453 80.041 21.506 1.00 0.00 O ATOM 655 CB HIS 87 28.899 79.708 24.943 1.00 0.00 C ATOM 656 CG HIS 87 30.335 79.803 25.393 1.00 0.00 C ATOM 657 ND1 HIS 87 31.186 80.866 25.182 1.00 0.00 N ATOM 658 CD2 HIS 87 31.046 78.903 26.130 1.00 0.00 C ATOM 659 CE1 HIS 87 32.354 80.564 25.796 1.00 0.00 C ATOM 660 NE2 HIS 87 32.318 79.380 26.377 1.00 0.00 N ATOM 661 N ASP 88 30.573 79.593 22.122 1.00 0.00 N ATOM 662 CA ASP 88 31.228 80.064 20.904 1.00 0.00 C ATOM 663 C ASP 88 32.211 78.954 20.431 1.00 0.00 C ATOM 664 O ASP 88 33.209 78.667 21.118 1.00 0.00 O ATOM 665 CB ASP 88 31.910 81.440 21.074 1.00 0.00 C ATOM 666 CG ASP 88 30.976 82.490 21.581 1.00 0.00 C ATOM 667 OD1 ASP 88 30.383 83.191 20.723 1.00 0.00 O ATOM 668 OD2 ASP 88 30.861 82.633 22.830 1.00 0.00 O ATOM 669 N PHE 89 32.003 78.518 19.198 1.00 0.00 N ATOM 670 CA PHE 89 32.726 77.407 18.543 1.00 0.00 C ATOM 671 C PHE 89 34.277 77.587 18.477 1.00 0.00 C ATOM 672 O PHE 89 34.957 76.685 18.983 1.00 0.00 O ATOM 673 CB PHE 89 32.121 77.120 17.161 1.00 0.00 C ATOM 674 CG PHE 89 32.642 75.862 16.537 1.00 0.00 C ATOM 675 CD1 PHE 89 32.051 74.628 16.850 1.00 0.00 C ATOM 676 CD2 PHE 89 33.716 75.895 15.631 1.00 0.00 C ATOM 677 CE1 PHE 89 32.512 73.454 16.250 1.00 0.00 C ATOM 678 CE2 PHE 89 34.187 74.716 15.040 1.00 0.00 C ATOM 679 CZ PHE 89 33.576 73.498 15.350 1.00 0.00 C ATOM 680 N ASP 90 34.822 78.630 17.850 1.00 0.00 N ATOM 681 CA ASP 90 36.273 78.755 17.721 1.00 0.00 C ATOM 682 C ASP 90 36.998 78.756 19.108 1.00 0.00 C ATOM 683 O ASP 90 37.726 77.806 19.363 1.00 0.00 O ATOM 684 CB ASP 90 36.618 79.978 16.886 1.00 0.00 C ATOM 685 CG ASP 90 36.077 79.912 15.485 1.00 0.00 C ATOM 686 OD1 ASP 90 34.839 80.099 15.344 1.00 0.00 O ATOM 687 OD2 ASP 90 36.869 79.656 14.540 1.00 0.00 O ATOM 688 N GLU 91 36.707 79.675 20.016 1.00 0.00 N ATOM 689 CA GLU 91 37.338 79.760 21.319 1.00 0.00 C ATOM 690 C GLU 91 37.235 78.462 22.174 1.00 0.00 C ATOM 691 O GLU 91 38.268 78.107 22.768 1.00 0.00 O ATOM 692 CB GLU 91 36.746 80.982 22.047 1.00 0.00 C ATOM 693 CG GLU 91 35.336 80.845 22.669 1.00 0.00 C ATOM 694 CD GLU 91 34.904 82.131 23.375 1.00 0.00 C ATOM 695 OE1 GLU 91 33.935 82.763 22.875 1.00 0.00 O ATOM 696 OE2 GLU 91 35.524 82.481 24.411 1.00 0.00 O ATOM 697 N LEU 92 36.098 77.745 22.219 1.00 0.00 N ATOM 698 CA LEU 92 36.070 76.524 23.057 1.00 0.00 C ATOM 699 C LEU 92 37.036 75.430 22.500 1.00 0.00 C ATOM 700 O LEU 92 37.835 74.894 23.280 1.00 0.00 O ATOM 701 CB LEU 92 34.629 75.992 23.219 1.00 0.00 C ATOM 702 CG LEU 92 34.386 74.774 24.148 1.00 0.00 C ATOM 703 CD1 LEU 92 35.014 74.958 25.539 1.00 0.00 C ATOM 704 CD2 LEU 92 34.747 73.396 23.548 1.00 0.00 C ATOM 705 N CYS 93 36.921 75.007 21.227 1.00 0.00 N ATOM 706 CA CYS 93 37.804 74.036 20.600 1.00 0.00 C ATOM 707 C CYS 93 39.292 74.518 20.428 1.00 0.00 C ATOM 708 O CYS 93 40.203 73.685 20.494 1.00 0.00 O ATOM 709 CB CYS 93 37.207 73.728 19.205 1.00 0.00 C ATOM 710 SG CYS 93 35.606 72.874 19.313 1.00 0.00 S ATOM 711 N LEU 94 39.537 75.792 20.235 1.00 0.00 N ATOM 712 CA LEU 94 40.867 76.394 19.961 1.00 0.00 C ATOM 713 C LEU 94 41.743 76.683 21.233 1.00 0.00 C ATOM 714 O LEU 94 42.870 77.163 21.074 1.00 0.00 O ATOM 715 CB LEU 94 40.690 77.727 19.192 1.00 0.00 C ATOM 716 CG LEU 94 41.937 78.291 18.444 1.00 0.00 C ATOM 717 CD1 LEU 94 41.564 79.565 17.669 1.00 0.00 C ATOM 718 CD2 LEU 94 42.619 77.287 17.498 1.00 0.00 C ATOM 719 N LYS 95 41.343 76.270 22.457 1.00 0.00 N ATOM 720 CA LYS 95 42.093 76.458 23.708 1.00 0.00 C ATOM 721 C LYS 95 43.477 75.774 23.537 1.00 0.00 C ATOM 722 O LYS 95 43.497 74.545 23.363 1.00 0.00 O ATOM 723 CB LYS 95 41.300 75.842 24.887 1.00 0.00 C ATOM 724 CG LYS 95 41.893 76.213 26.272 1.00 0.00 C ATOM 725 CD LYS 95 41.016 75.697 27.426 1.00 0.00 C ATOM 726 CE LYS 95 41.441 76.182 28.816 1.00 0.00 C ATOM 727 NZ LYS 95 42.754 75.614 29.184 1.00 0.00 N TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 68.64 48.7 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 66.99 51.8 56 100.0 56 ARMSMC BURIED . . . . . . . . 72.68 40.9 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 93.14 36.1 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 94.46 34.3 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 93.59 32.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 92.13 45.5 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 72.62 56.5 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 48.94 64.7 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 78.99 55.6 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 42.43 60.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 73.45 33.3 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 77.23 25.0 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 64.10 42.9 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 99.48 0.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 65.09 20.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 65.09 20.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 66.00 25.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 61.33 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.57 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.57 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.1892 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 8.04 29 100.0 29 CRMSCA BURIED . . . . . . . . 6.17 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.73 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 8.17 142 100.0 142 CRMSMC BURIED . . . . . . . . 6.45 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.40 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 10.14 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 11.21 103 100.0 103 CRMSSC BURIED . . . . . . . . 7.94 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.97 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 9.57 219 100.0 219 CRMSALL BURIED . . . . . . . . 7.19 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.997 1.000 0.500 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 7.439 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 5.834 1.000 0.500 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.105 1.000 0.500 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 7.527 1.000 0.500 142 100.0 142 ERRMC BURIED . . . . . . . . 6.015 1.000 0.500 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.706 1.000 0.500 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 9.432 1.000 0.500 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 10.610 1.000 0.500 103 100.0 103 ERRSC BURIED . . . . . . . . 7.379 1.000 0.500 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.217 1.000 0.500 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 8.814 1.000 0.500 219 100.0 219 ERRALL BURIED . . . . . . . . 6.661 1.000 0.500 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 2 11 33 40 40 DISTCA CA (P) 0.00 0.00 5.00 27.50 82.50 40 DISTCA CA (RMS) 0.00 0.00 2.64 3.78 6.36 DISTCA ALL (N) 0 0 11 60 210 303 303 DISTALL ALL (P) 0.00 0.00 3.63 19.80 69.31 303 DISTALL ALL (RMS) 0.00 0.00 2.59 3.82 6.54 DISTALL END of the results output