####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS423_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS423_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 56 - 95 2.48 2.48 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 27 67 - 93 1.95 2.59 LCS_AVERAGE: 56.94 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 72 - 93 0.99 2.59 LCS_AVERAGE: 36.00 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 7 12 40 6 10 22 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT S 57 S 57 7 12 40 6 10 23 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 58 C 58 7 12 40 6 11 24 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT K 59 K 59 7 12 40 6 10 23 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT G 60 G 60 7 12 40 5 10 20 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT R 61 R 61 7 12 40 6 14 24 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 62 C 62 7 12 40 6 11 24 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT F 63 F 63 4 12 40 3 4 4 15 30 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT E 64 E 64 4 12 40 3 15 24 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT L 65 L 65 4 12 40 4 4 4 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT Q 66 Q 66 4 12 40 4 4 4 8 27 30 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT E 67 E 67 4 27 40 4 8 16 28 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT V 68 V 68 4 27 40 4 4 4 5 20 30 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT G 69 G 69 4 27 40 0 3 4 6 15 30 34 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT P 70 P 70 4 27 40 2 4 5 7 11 14 20 33 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT P 71 P 71 4 27 40 3 4 17 28 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT D 72 D 72 22 27 40 3 15 24 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 73 C 73 22 27 40 8 15 24 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT R 74 R 74 22 27 40 8 15 24 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 75 C 75 22 27 40 8 15 24 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT D 76 D 76 22 27 40 8 15 24 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT N 77 N 77 22 27 40 4 12 21 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT L 78 L 78 22 27 40 3 15 24 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 79 C 79 22 27 40 3 15 24 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT K 80 K 80 22 27 40 8 15 24 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT S 81 S 81 22 27 40 3 11 20 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT Y 82 Y 82 22 27 40 8 15 24 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT S 83 S 83 22 27 40 4 14 24 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT S 84 S 84 22 27 40 5 14 24 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 85 C 85 22 27 40 7 15 24 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 86 C 86 22 27 40 7 14 24 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT H 87 H 87 22 27 40 7 14 24 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT D 88 D 88 22 27 40 8 15 24 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT F 89 F 89 22 27 40 8 15 24 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT D 90 D 90 22 27 40 7 15 24 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT E 91 E 91 22 27 40 6 15 24 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT L 92 L 92 22 27 40 7 15 24 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 93 C 93 22 27 40 7 15 24 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT L 94 L 94 4 25 40 3 4 4 7 17 26 30 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT K 95 K 95 3 25 40 0 3 7 10 11 14 21 26 37 38 39 40 40 40 40 40 40 40 40 40 LCS_AVERAGE LCS_A: 64.31 ( 36.00 56.94 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 15 24 31 33 34 36 36 38 39 39 40 40 40 40 40 40 40 40 40 GDT PERCENT_AT 20.00 37.50 60.00 77.50 82.50 85.00 90.00 90.00 95.00 97.50 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.37 0.68 0.99 1.24 1.40 1.51 1.69 1.69 2.08 2.27 2.27 2.48 2.48 2.48 2.48 2.48 2.48 2.48 2.48 2.48 GDT RMS_ALL_AT 2.64 2.60 2.55 2.61 2.57 2.55 2.56 2.56 2.56 2.51 2.51 2.48 2.48 2.48 2.48 2.48 2.48 2.48 2.48 2.48 # Checking swapping # possible swapping detected: E 64 E 64 # possible swapping detected: E 67 E 67 # possible swapping detected: D 76 D 76 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 1.836 0 0.173 0.173 1.836 72.857 72.857 LGA S 57 S 57 1.794 0 0.202 0.586 2.898 66.905 68.889 LGA C 58 C 58 1.453 0 0.236 0.258 2.301 75.119 77.222 LGA K 59 K 59 1.682 0 0.576 0.481 4.704 60.714 72.222 LGA G 60 G 60 1.958 0 0.154 0.154 1.958 72.857 72.857 LGA R 61 R 61 0.955 0 0.102 0.254 1.834 88.214 80.779 LGA C 62 C 62 1.281 0 0.615 1.009 4.202 77.262 71.270 LGA F 63 F 63 3.616 0 0.305 1.276 12.089 55.595 24.199 LGA E 64 E 64 1.482 0 0.675 0.871 3.453 69.405 62.116 LGA L 65 L 65 1.985 0 0.659 0.629 3.684 65.595 65.238 LGA Q 66 Q 66 3.517 0 0.038 0.637 11.031 59.881 30.688 LGA E 67 E 67 2.621 0 0.095 1.175 10.044 68.929 35.503 LGA V 68 V 68 3.548 0 0.595 0.640 7.446 45.119 31.088 LGA G 69 G 69 5.475 0 0.469 0.469 5.542 28.095 28.095 LGA P 70 P 70 6.454 0 0.046 0.298 10.018 22.024 13.401 LGA P 71 P 71 3.046 0 0.129 0.174 3.750 59.762 54.626 LGA D 72 D 72 1.300 3 0.517 0.549 2.816 75.357 44.821 LGA C 73 C 73 0.464 0 0.114 0.846 1.368 92.976 89.127 LGA R 74 R 74 0.408 0 0.077 0.760 2.965 97.619 84.416 LGA C 75 C 75 0.628 0 0.058 0.055 0.975 92.857 92.063 LGA D 76 D 76 0.748 0 0.094 0.534 1.596 85.952 83.810 LGA N 77 N 77 1.770 0 0.102 0.399 4.138 79.286 62.262 LGA L 78 L 78 1.050 0 0.349 1.351 4.191 79.524 65.298 LGA C 79 C 79 0.865 0 0.061 0.697 2.512 92.857 85.000 LGA K 80 K 80 0.204 0 0.112 1.287 6.250 90.595 76.085 LGA S 81 S 81 1.757 0 0.138 0.685 2.584 79.286 73.175 LGA Y 82 Y 82 0.417 0 0.133 0.213 1.315 97.619 91.389 LGA S 83 S 83 1.060 0 0.094 0.111 1.490 85.952 84.444 LGA S 84 S 84 1.009 0 0.124 0.124 1.085 85.952 87.460 LGA C 85 C 85 0.582 0 0.045 0.142 1.370 90.476 88.968 LGA C 86 C 86 1.146 0 0.097 0.747 3.282 83.690 77.698 LGA H 87 H 87 1.254 0 0.078 1.313 8.504 85.952 49.619 LGA D 88 D 88 0.737 0 0.167 1.189 3.942 90.476 76.071 LGA F 89 F 89 0.467 0 0.086 0.093 0.842 92.857 97.403 LGA D 90 D 90 1.303 0 0.054 0.774 2.696 79.405 73.155 LGA E 91 E 91 1.525 0 0.129 0.753 2.082 72.976 79.841 LGA L 92 L 92 1.461 0 0.165 0.283 2.787 81.429 73.214 LGA C 93 C 93 1.243 0 0.635 0.887 3.676 73.095 71.032 LGA L 94 L 94 5.905 0 0.583 0.545 12.009 17.738 9.762 LGA K 95 K 95 7.259 0 0.127 0.870 15.288 9.286 5.926 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 2.480 2.481 3.756 72.539 64.577 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 36 1.69 76.250 76.120 2.006 LGA_LOCAL RMSD: 1.694 Number of atoms: 36 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.562 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 2.480 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.242515 * X + 0.895673 * Y + -0.372769 * Z + 29.784857 Y_new = -0.959068 * X + 0.279245 * Y + 0.047011 * Z + 70.042412 Z_new = 0.146201 * X + 0.346110 * Y + 0.926733 * Z + -10.228535 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.323123 -0.146727 0.357431 [DEG: -75.8094 -8.4068 20.4793 ] ZXZ: -1.696248 0.385175 0.399676 [DEG: -97.1879 22.0689 22.8998 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS423_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS423_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 36 1.69 76.120 2.48 REMARK ---------------------------------------------------------- MOLECULE T0543TS423_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT N/A ATOM 422 N GLY 56 34.074 72.596 19.424 1.00 30.00 N ATOM 423 CA GLY 56 33.327 72.637 20.643 1.00 30.00 C ATOM 424 C GLY 56 32.338 73.744 20.500 1.00 30.00 C ATOM 425 O GLY 56 32.210 74.596 21.376 1.00 30.00 O ATOM 426 N SER 57 31.607 73.750 19.368 1.00 30.00 N ATOM 427 CA SER 57 30.697 74.821 19.103 1.00 30.00 C ATOM 428 C SER 57 29.366 74.203 18.818 1.00 30.00 C ATOM 429 O SER 57 29.210 72.985 18.902 1.00 30.00 O ATOM 430 CB SER 57 31.201 75.676 17.938 1.00 30.00 C ATOM 431 OG SER 57 31.185 74.945 16.725 1.00 30.00 O ATOM 432 N CYS 58 28.364 75.033 18.472 1.00 30.00 N ATOM 433 CA CYS 58 27.094 74.493 18.089 1.00 30.00 C ATOM 434 C CYS 58 26.655 75.220 16.862 1.00 30.00 C ATOM 435 O CYS 58 25.508 75.657 16.782 1.00 30.00 O ATOM 436 CB CYS 58 26.087 74.631 19.232 1.00 30.00 C ATOM 437 SG CYS 58 26.565 73.784 20.756 1.00 30.00 S ATOM 438 N LYS 59 27.565 75.365 15.876 1.00 30.00 N ATOM 439 CA LYS 59 27.359 76.320 14.811 1.00 30.00 C ATOM 440 C LYS 59 26.323 75.885 13.807 1.00 30.00 C ATOM 441 O LYS 59 25.385 76.628 13.523 1.00 30.00 O ATOM 442 CB LYS 59 28.674 76.593 14.076 1.00 30.00 C ATOM 443 CG LYS 59 28.559 77.618 12.960 1.00 30.00 C ATOM 444 CD LYS 59 29.912 77.901 12.328 1.00 30.00 C ATOM 445 CE LYS 59 29.795 78.916 11.203 1.00 30.00 C ATOM 446 NZ LYS 59 31.113 79.203 10.574 1.00 30.00 N ATOM 447 N GLY 60 26.459 74.674 13.244 1.00 30.00 N ATOM 448 CA GLY 60 25.421 74.184 12.376 1.00 30.00 C ATOM 449 C GLY 60 25.192 72.781 12.814 1.00 30.00 C ATOM 450 O GLY 60 24.781 71.927 12.032 1.00 30.00 O ATOM 451 N ARG 61 25.467 72.543 14.108 1.00 30.00 N ATOM 452 CA ARG 61 25.355 71.278 14.753 1.00 30.00 C ATOM 453 C ARG 61 24.015 70.973 15.355 1.00 30.00 C ATOM 454 O ARG 61 23.754 69.823 15.703 1.00 30.00 O ATOM 455 CB ARG 61 26.401 71.148 15.863 1.00 30.00 C ATOM 456 CG ARG 61 27.836 71.114 15.363 1.00 30.00 C ATOM 457 CD ARG 61 28.819 70.994 16.514 1.00 30.00 C ATOM 458 NE ARG 61 28.683 69.722 17.220 1.00 30.00 N ATOM 459 CZ ARG 61 29.227 69.464 18.405 1.00 30.00 C ATOM 460 NH1 ARG 61 29.050 68.277 18.971 1.00 30.00 H ATOM 461 NH2 ARG 61 29.947 70.391 19.021 1.00 30.00 H ATOM 462 N CYS 62 23.135 71.994 15.494 1.00 30.00 N ATOM 463 CA CYS 62 21.828 71.954 16.119 1.00 30.00 C ATOM 464 C CYS 62 20.974 70.891 15.505 1.00 30.00 C ATOM 465 O CYS 62 20.159 70.259 16.178 1.00 30.00 O ATOM 466 CB CYS 62 21.138 73.315 16.006 1.00 30.00 C ATOM 467 SG CYS 62 19.567 73.432 16.896 1.00 30.00 S ATOM 468 N PHE 63 21.176 70.697 14.203 1.00 30.00 N ATOM 469 CA PHE 63 20.523 69.800 13.302 1.00 30.00 C ATOM 470 C PHE 63 20.893 68.349 13.501 1.00 30.00 C ATOM 471 O PHE 63 20.048 67.463 13.361 1.00 30.00 O ATOM 472 CB PHE 63 20.826 70.182 11.852 1.00 30.00 C ATOM 473 CG PHE 63 20.130 69.317 10.839 1.00 30.00 C ATOM 474 CD1 PHE 63 18.774 69.060 10.941 1.00 30.00 C ATOM 475 CD2 PHE 63 20.833 68.761 9.785 1.00 30.00 C ATOM 476 CE1 PHE 63 18.135 68.265 10.010 1.00 30.00 C ATOM 477 CE2 PHE 63 20.193 67.965 8.854 1.00 30.00 C ATOM 478 CZ PHE 63 18.850 67.716 8.963 1.00 30.00 C ATOM 479 N GLU 64 22.177 68.101 13.832 1.00 30.00 N ATOM 480 CA GLU 64 22.853 66.826 13.752 1.00 30.00 C ATOM 481 C GLU 64 22.391 65.695 14.600 1.00 30.00 C ATOM 482 O GLU 64 22.515 64.574 14.102 1.00 30.00 O ATOM 483 CB GLU 64 24.342 66.988 14.068 1.00 30.00 C ATOM 484 CG GLU 64 25.124 67.739 13.003 1.00 30.00 C ATOM 485 CD GLU 64 26.583 67.920 13.373 1.00 30.00 C ATOM 486 OE1 GLU 64 26.859 68.352 14.512 1.00 30.00 O ATOM 487 OE2 GLU 64 27.452 67.630 12.523 1.00 30.00 O ATOM 488 N LEU 65 21.881 65.988 15.829 1.00 30.00 N ATOM 489 CA LEU 65 21.520 65.081 16.904 1.00 30.00 C ATOM 490 C LEU 65 22.814 64.686 17.575 1.00 30.00 C ATOM 491 O LEU 65 23.865 65.232 17.237 1.00 30.00 O ATOM 492 CB LEU 65 20.750 63.878 16.355 1.00 30.00 C ATOM 493 CG LEU 65 19.411 64.182 15.679 1.00 30.00 C ATOM 494 CD1 LEU 65 18.819 62.921 15.068 1.00 30.00 C ATOM 495 CD2 LEU 65 18.437 64.797 16.671 1.00 30.00 C ATOM 496 N GLN 66 22.795 63.737 18.538 1.00 30.00 N ATOM 497 CA GLN 66 23.985 63.429 19.276 1.00 30.00 C ATOM 498 C GLN 66 25.004 62.744 18.437 1.00 30.00 C ATOM 499 O GLN 66 24.716 61.895 17.588 1.00 30.00 O ATOM 500 CB GLN 66 23.653 62.557 20.489 1.00 30.00 C ATOM 501 CG GLN 66 24.836 62.292 21.406 1.00 30.00 C ATOM 502 CD GLN 66 24.450 61.504 22.642 1.00 30.00 C ATOM 503 OE1 GLN 66 23.270 61.396 22.977 1.00 30.00 O ATOM 504 NE2 GLN 66 25.445 60.950 23.324 1.00 30.00 N ATOM 505 N GLU 67 26.266 63.137 18.691 1.00 30.00 N ATOM 506 CA GLU 67 27.363 62.605 17.965 1.00 30.00 C ATOM 507 C GLU 67 28.283 62.032 18.979 1.00 30.00 C ATOM 508 O GLU 67 28.719 62.704 19.915 1.00 30.00 O ATOM 509 CB GLU 67 28.022 63.692 17.114 1.00 30.00 C ATOM 510 CG GLU 67 27.128 64.248 16.017 1.00 30.00 C ATOM 511 CD GLU 67 27.812 65.325 15.199 1.00 30.00 C ATOM 512 OE1 GLU 67 28.218 66.350 15.787 1.00 30.00 O ATOM 513 OE2 GLU 67 27.940 65.147 13.970 1.00 30.00 O ATOM 514 N VAL 68 28.585 60.740 18.780 1.00 30.00 N ATOM 515 CA VAL 68 29.442 59.979 19.639 1.00 30.00 C ATOM 516 C VAL 68 30.797 60.604 19.495 1.00 30.00 C ATOM 517 O VAL 68 31.582 60.654 20.444 1.00 30.00 O ATOM 518 CB VAL 68 29.427 58.484 19.271 1.00 30.00 C ATOM 519 CG1 VAL 68 30.475 57.728 20.072 1.00 30.00 C ATOM 520 CG2 VAL 68 28.046 57.892 19.502 1.00 30.00 C ATOM 521 N GLY 69 31.080 61.097 18.268 1.00 30.00 N ATOM 522 CA GLY 69 32.417 61.211 17.742 1.00 30.00 C ATOM 523 C GLY 69 33.224 62.228 18.492 1.00 30.00 C ATOM 524 O GLY 69 34.354 61.926 18.873 1.00 30.00 O ATOM 525 N PRO 70 32.725 63.412 18.730 1.00 30.00 N ATOM 526 CA PRO 70 33.360 64.172 19.772 1.00 30.00 C ATOM 527 C PRO 70 32.677 63.927 21.079 1.00 30.00 C ATOM 528 O PRO 70 31.449 63.860 21.105 1.00 30.00 O ATOM 529 CB PRO 70 33.212 65.625 19.314 1.00 30.00 C ATOM 530 CG PRO 70 31.945 65.640 18.527 1.00 30.00 C ATOM 531 CD PRO 70 31.867 64.308 17.836 1.00 30.00 C ATOM 532 N PRO 71 33.426 63.794 22.140 1.00 30.00 N ATOM 533 CA PRO 71 32.835 63.948 23.438 1.00 30.00 C ATOM 534 C PRO 71 33.120 65.339 23.892 1.00 30.00 C ATOM 535 O PRO 71 32.692 65.697 24.989 1.00 30.00 O ATOM 536 CB PRO 71 33.530 62.883 24.289 1.00 30.00 C ATOM 537 CG PRO 71 34.924 62.834 23.760 1.00 30.00 C ATOM 538 CD PRO 71 34.815 63.041 22.276 1.00 30.00 C ATOM 539 N ASP 72 33.836 66.128 23.065 1.00 30.00 N ATOM 540 CA ASP 72 34.343 67.400 23.488 1.00 30.00 C ATOM 541 C ASP 72 33.177 68.324 23.629 1.00 30.00 C ATOM 542 O ASP 72 32.850 68.754 24.733 1.00 30.00 O ATOM 543 CB ASP 72 35.374 67.926 22.487 1.00 30.00 C ATOM 544 CG ASP 72 36.044 69.202 22.957 1.00 30.00 C ATOM 545 OD1 ASP 72 36.723 69.165 24.005 1.00 30.00 O ATOM 546 OD2 ASP 72 35.890 70.240 22.279 1.00 30.00 O ATOM 547 N CYS 73 32.517 68.654 22.502 1.00 30.00 N ATOM 548 CA CYS 73 31.309 69.407 22.606 1.00 30.00 C ATOM 549 C CYS 73 30.227 68.608 21.962 1.00 30.00 C ATOM 550 O CYS 73 30.423 68.013 20.904 1.00 30.00 O ATOM 551 CB CYS 73 31.475 70.780 21.952 1.00 30.00 C ATOM 552 SG CYS 73 32.757 71.814 22.698 1.00 30.00 S ATOM 553 N ARG 74 29.041 68.577 22.598 1.00 30.00 N ATOM 554 CA ARG 74 27.875 68.112 21.910 1.00 30.00 C ATOM 555 C ARG 74 26.974 69.293 21.758 1.00 30.00 C ATOM 556 O ARG 74 26.828 70.097 22.675 1.00 30.00 O ATOM 557 CB ARG 74 27.217 66.968 22.684 1.00 30.00 C ATOM 558 CG ARG 74 28.070 65.714 22.782 1.00 30.00 C ATOM 559 CD ARG 74 27.346 64.611 23.539 1.00 30.00 C ATOM 560 NE ARG 74 27.163 64.945 24.949 1.00 30.00 N ATOM 561 CZ ARG 74 26.405 64.248 25.790 1.00 30.00 C ATOM 562 NH1 ARG 74 26.298 64.627 27.056 1.00 30.00 H ATOM 563 NH2 ARG 74 25.754 63.176 25.361 1.00 30.00 H ATOM 564 N CYS 75 26.341 69.423 20.577 1.00 30.00 N ATOM 565 CA CYS 75 25.665 70.646 20.266 1.00 30.00 C ATOM 566 C CYS 75 24.248 70.309 19.946 1.00 30.00 C ATOM 567 O CYS 75 23.590 71.009 19.177 1.00 30.00 O ATOM 568 CB CYS 75 26.360 71.361 19.105 1.00 30.00 C ATOM 569 SG CYS 75 28.051 71.892 19.459 1.00 30.00 S ATOM 570 N ASP 76 23.743 69.215 20.538 1.00 30.00 N ATOM 571 CA ASP 76 22.412 68.781 20.241 1.00 30.00 C ATOM 572 C ASP 76 21.482 69.507 21.164 1.00 30.00 C ATOM 573 O ASP 76 21.907 70.384 21.913 1.00 30.00 O ATOM 574 CB ASP 76 22.297 67.263 20.390 1.00 30.00 C ATOM 575 CG ASP 76 22.465 66.805 21.826 1.00 30.00 C ATOM 576 OD1 ASP 76 22.350 67.652 22.737 1.00 30.00 O ATOM 577 OD2 ASP 76 22.709 65.599 22.040 1.00 30.00 O ATOM 578 N ASN 77 20.178 69.163 21.142 1.00 30.00 N ATOM 579 CA ASN 77 19.237 69.891 21.940 1.00 30.00 C ATOM 580 C ASN 77 19.247 69.280 23.303 1.00 30.00 C ATOM 581 O ASN 77 19.124 69.971 24.312 1.00 30.00 O ATOM 582 CB ASN 77 17.852 69.865 21.290 1.00 30.00 C ATOM 583 CG ASN 77 17.781 70.714 20.036 1.00 30.00 C ATOM 584 OD1 ASN 77 18.595 71.616 19.837 1.00 30.00 O ATOM 585 ND2 ASN 77 16.804 70.426 19.182 1.00 30.00 N ATOM 586 N LEU 78 19.399 67.944 23.351 1.00 30.00 N ATOM 587 CA LEU 78 19.342 67.211 24.581 1.00 30.00 C ATOM 588 C LEU 78 20.721 67.256 25.162 1.00 30.00 C ATOM 589 O LEU 78 21.445 66.264 25.155 1.00 30.00 O ATOM 590 CB LEU 78 18.855 65.782 24.331 1.00 30.00 C ATOM 591 CG LEU 78 17.471 65.640 23.695 1.00 30.00 C ATOM 592 CD1 LEU 78 17.141 64.176 23.449 1.00 30.00 C ATOM 593 CD2 LEU 78 16.407 66.281 24.571 1.00 30.00 C ATOM 594 N CYS 79 21.133 68.426 25.690 1.00 30.00 N ATOM 595 CA CYS 79 22.535 68.598 25.931 1.00 30.00 C ATOM 596 C CYS 79 22.723 69.564 27.050 1.00 30.00 C ATOM 597 O CYS 79 23.747 69.529 27.730 1.00 30.00 O ATOM 598 CB CYS 79 23.242 69.077 24.662 1.00 30.00 C ATOM 599 SG CYS 79 25.038 69.222 24.817 1.00 30.00 S ATOM 600 N LYS 80 21.744 70.459 27.278 1.00 30.00 N ATOM 601 CA LYS 80 22.100 71.694 27.906 1.00 30.00 C ATOM 602 C LYS 80 22.174 71.481 29.387 1.00 30.00 C ATOM 603 O LYS 80 22.796 72.265 30.102 1.00 30.00 O ATOM 604 CB LYS 80 21.089 72.786 27.552 1.00 30.00 C ATOM 605 CG LYS 80 21.116 73.207 26.091 1.00 30.00 C ATOM 606 CD LYS 80 20.198 74.392 25.842 1.00 30.00 C ATOM 607 CE LYS 80 18.737 73.973 25.866 1.00 30.00 C ATOM 608 NZ LYS 80 18.401 73.067 24.734 1.00 30.00 N ATOM 609 N SER 81 21.535 70.408 29.895 1.00 30.00 N ATOM 610 CA SER 81 21.478 70.233 31.315 1.00 30.00 C ATOM 611 C SER 81 22.583 69.309 31.702 1.00 30.00 C ATOM 612 O SER 81 22.933 69.204 32.877 1.00 30.00 O ATOM 613 CB SER 81 20.109 69.695 31.734 1.00 30.00 C ATOM 614 OG SER 81 19.893 68.393 31.219 1.00 30.00 O ATOM 615 N TYR 82 23.167 68.607 30.708 1.00 30.00 N ATOM 616 CA TYR 82 24.368 67.850 30.940 1.00 30.00 C ATOM 617 C TYR 82 25.477 68.815 31.237 1.00 30.00 C ATOM 618 O TYR 82 26.399 68.471 31.975 1.00 30.00 O ATOM 619 CB TYR 82 24.691 66.974 29.727 1.00 30.00 C ATOM 620 CG TYR 82 23.751 65.803 29.550 1.00 30.00 C ATOM 621 CD1 TYR 82 22.856 65.765 28.487 1.00 30.00 C ATOM 622 CD2 TYR 82 23.761 64.741 30.443 1.00 30.00 C ATOM 623 CE1 TYR 82 21.993 64.699 28.317 1.00 30.00 C ATOM 624 CE2 TYR 82 22.905 63.667 30.288 1.00 30.00 C ATOM 625 CZ TYR 82 22.017 63.654 29.214 1.00 30.00 C ATOM 626 OH TYR 82 21.158 62.591 29.046 1.00 30.00 H ATOM 627 N SER 83 25.384 70.038 30.652 1.00 30.00 N ATOM 628 CA SER 83 26.486 70.915 30.360 1.00 30.00 C ATOM 629 C SER 83 27.603 70.127 29.767 1.00 30.00 C ATOM 630 O SER 83 28.743 70.190 30.223 1.00 30.00 O ATOM 631 CB SER 83 26.941 71.643 31.627 1.00 30.00 C ATOM 632 OG SER 83 25.902 72.450 32.152 1.00 30.00 O ATOM 633 N SER 84 27.273 69.356 28.716 1.00 30.00 N ATOM 634 CA SER 84 28.260 68.918 27.779 1.00 30.00 C ATOM 635 C SER 84 28.227 69.874 26.630 1.00 30.00 C ATOM 636 O SER 84 29.082 69.814 25.749 1.00 30.00 O ATOM 637 CB SER 84 27.983 67.478 27.342 1.00 30.00 C ATOM 638 OG SER 84 26.763 67.388 26.626 1.00 30.00 O ATOM 639 N CYS 85 27.232 70.788 26.609 1.00 30.00 N ATOM 640 CA CYS 85 27.027 71.608 25.454 1.00 30.00 C ATOM 641 C CYS 85 28.104 72.640 25.426 1.00 30.00 C ATOM 642 O CYS 85 28.838 72.823 26.395 1.00 30.00 O ATOM 643 CB CYS 85 25.635 72.243 25.488 1.00 30.00 C ATOM 644 SG CYS 85 24.272 71.058 25.393 1.00 30.00 S ATOM 645 N CYS 86 28.221 73.349 24.289 1.00 30.00 N ATOM 646 CA CYS 86 29.359 74.193 24.105 1.00 30.00 C ATOM 647 C CYS 86 29.011 75.541 24.633 1.00 30.00 C ATOM 648 O CYS 86 27.888 75.784 25.069 1.00 30.00 O ATOM 649 CB CYS 86 29.757 74.242 22.629 1.00 30.00 C ATOM 650 SG CYS 86 28.555 75.068 21.559 1.00 30.00 S ATOM 651 N HIS 87 29.995 76.458 24.600 1.00 30.00 N ATOM 652 CA HIS 87 29.735 77.824 24.933 1.00 30.00 C ATOM 653 C HIS 87 29.170 78.457 23.707 1.00 30.00 C ATOM 654 O HIS 87 28.420 79.429 23.780 1.00 30.00 O ATOM 655 CB HIS 87 31.015 78.512 25.412 1.00 30.00 C ATOM 656 CG HIS 87 31.513 78.010 26.731 1.00 30.00 C ATOM 657 ND1 HIS 87 30.835 78.222 27.912 1.00 30.00 N ATOM 658 CD2 HIS 87 32.673 77.256 27.184 1.00 30.00 C ATOM 659 CE1 HIS 87 31.525 77.656 28.919 1.00 30.00 C ATOM 660 NE2 HIS 87 32.628 77.076 28.491 1.00 30.00 N ATOM 661 N ASP 88 29.528 77.904 22.534 1.00 30.00 N ATOM 662 CA ASP 88 29.149 78.501 21.290 1.00 30.00 C ATOM 663 C ASP 88 27.732 78.118 21.005 1.00 30.00 C ATOM 664 O ASP 88 27.106 78.681 20.110 1.00 30.00 O ATOM 665 CB ASP 88 30.092 78.055 20.171 1.00 30.00 C ATOM 666 CG ASP 88 31.490 78.621 20.326 1.00 30.00 C ATOM 667 OD1 ASP 88 31.635 79.671 20.988 1.00 30.00 O ATOM 668 OD2 ASP 88 32.439 78.015 19.788 1.00 30.00 O ATOM 669 N PHE 89 27.183 77.149 21.757 1.00 30.00 N ATOM 670 CA PHE 89 25.893 76.578 21.480 1.00 30.00 C ATOM 671 C PHE 89 24.814 77.611 21.311 1.00 30.00 C ATOM 672 O PHE 89 24.065 77.558 20.334 1.00 30.00 O ATOM 673 CB PHE 89 25.485 75.609 22.592 1.00 30.00 C ATOM 674 CG PHE 89 24.120 75.013 22.406 1.00 30.00 C ATOM 675 CD1 PHE 89 23.923 73.952 21.540 1.00 30.00 C ATOM 676 CD2 PHE 89 23.030 75.515 23.096 1.00 30.00 C ATOM 677 CE1 PHE 89 22.666 73.403 21.370 1.00 30.00 C ATOM 678 CE2 PHE 89 21.773 74.967 22.925 1.00 30.00 C ATOM 679 CZ PHE 89 21.589 73.916 22.066 1.00 30.00 C ATOM 680 N ASP 90 24.684 78.578 22.234 1.00 30.00 N ATOM 681 CA ASP 90 23.551 79.459 22.137 1.00 30.00 C ATOM 682 C ASP 90 23.535 80.217 20.845 1.00 30.00 C ATOM 683 O ASP 90 22.505 80.262 20.173 1.00 30.00 O ATOM 684 CB ASP 90 23.536 80.444 23.308 1.00 30.00 C ATOM 685 CG ASP 90 23.177 79.780 24.623 1.00 30.00 C ATOM 686 OD1 ASP 90 22.681 78.633 24.594 1.00 30.00 O ATOM 687 OD2 ASP 90 23.391 80.405 25.683 1.00 30.00 O ATOM 688 N GLU 91 24.659 80.837 20.447 1.00 30.00 N ATOM 689 CA GLU 91 24.598 81.616 19.243 1.00 30.00 C ATOM 690 C GLU 91 24.367 80.726 18.064 1.00 30.00 C ATOM 691 O GLU 91 23.570 81.041 17.181 1.00 30.00 O ATOM 692 CB GLU 91 25.885 82.425 19.064 1.00 30.00 C ATOM 693 CG GLU 91 26.060 83.544 20.076 1.00 30.00 C ATOM 694 CD GLU 91 27.373 84.284 19.905 1.00 30.00 C ATOM 695 OE1 GLU 91 28.226 83.807 19.127 1.00 30.00 O ATOM 696 OE2 GLU 91 27.548 85.340 20.547 1.00 30.00 O ATOM 697 N LEU 92 25.073 79.582 18.028 1.00 30.00 N ATOM 698 CA LEU 92 25.098 78.749 16.862 1.00 30.00 C ATOM 699 C LEU 92 23.761 78.186 16.509 1.00 30.00 C ATOM 700 O LEU 92 23.356 78.250 15.349 1.00 30.00 O ATOM 701 CB LEU 92 26.088 77.597 17.049 1.00 30.00 C ATOM 702 CG LEU 92 27.570 77.973 17.071 1.00 30.00 C ATOM 703 CD1 LEU 92 28.423 76.776 17.464 1.00 30.00 C ATOM 704 CD2 LEU 92 28.008 78.513 15.719 1.00 30.00 C ATOM 705 N CYS 93 23.021 77.618 17.477 1.00 30.00 N ATOM 706 CA CYS 93 21.792 77.006 17.065 1.00 30.00 C ATOM 707 C CYS 93 20.873 78.050 16.529 1.00 30.00 C ATOM 708 O CYS 93 20.583 79.046 17.190 1.00 30.00 O ATOM 709 CB CYS 93 21.148 76.258 18.234 1.00 30.00 C ATOM 710 SG CYS 93 19.601 75.418 17.822 1.00 30.00 S ATOM 711 N LEU 94 20.391 77.829 15.291 1.00 30.00 N ATOM 712 CA LEU 94 19.493 78.746 14.653 1.00 30.00 C ATOM 713 C LEU 94 18.375 77.918 14.093 1.00 30.00 C ATOM 714 O LEU 94 18.515 76.699 13.993 1.00 30.00 O ATOM 715 CB LEU 94 20.225 79.552 13.578 1.00 30.00 C ATOM 716 CG LEU 94 21.395 80.415 14.057 1.00 30.00 C ATOM 717 CD1 LEU 94 22.139 81.015 12.873 1.00 30.00 C ATOM 718 CD2 LEU 94 20.906 81.514 14.987 1.00 30.00 C ATOM 719 N LYS 95 17.240 78.556 13.715 1.00 30.00 N ATOM 720 CA LYS 95 16.146 77.827 13.133 1.00 30.00 C ATOM 721 C LYS 95 16.714 77.065 12.000 1.00 30.00 C ATOM 722 O LYS 95 17.010 77.627 10.947 1.00 30.00 O ATOM 723 CB LYS 95 15.034 78.784 12.701 1.00 30.00 C ATOM 724 CG LYS 95 13.829 78.097 12.078 1.00 30.00 C ATOM 725 CD LYS 95 13.024 77.341 13.123 1.00 30.00 C ATOM 726 CE LYS 95 11.788 76.700 12.512 1.00 30.00 C ATOM 727 NZ LYS 95 10.990 75.956 13.524 1.00 30.00 N TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 65.79 62.8 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 65.05 62.5 56 100.0 56 ARMSMC BURIED . . . . . . . . 67.65 63.6 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 77.04 55.6 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 78.08 54.3 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 73.11 56.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 85.29 54.5 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 61.48 60.9 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 57.70 58.8 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 67.07 55.6 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 34.50 80.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 53.94 55.6 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 51.12 62.5 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 41.75 57.1 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 83.62 50.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 62.85 60.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 62.85 60.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 70.21 50.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 5.79 100.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.48 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.48 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.0620 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 2.75 29 100.0 29 CRMSCA BURIED . . . . . . . . 1.54 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.65 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 2.91 142 100.0 142 CRMSMC BURIED . . . . . . . . 1.82 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 4.86 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 4.44 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 5.46 103 100.0 103 CRMSSC BURIED . . . . . . . . 2.77 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.80 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 4.24 219 100.0 219 CRMSALL BURIED . . . . . . . . 2.26 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 28.013 0.880 0.889 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 27.764 0.866 0.877 29 100.0 29 ERRCA BURIED . . . . . . . . 28.669 0.916 0.920 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 27.918 0.875 0.885 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 27.697 0.863 0.875 142 100.0 142 ERRMC BURIED . . . . . . . . 28.489 0.906 0.912 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 26.329 0.796 0.824 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 26.734 0.817 0.840 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 25.744 0.768 0.801 103 100.0 103 ERRSC BURIED . . . . . . . . 27.837 0.870 0.882 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 27.218 0.840 0.858 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 26.843 0.821 0.843 219 100.0 219 ERRALL BURIED . . . . . . . . 28.197 0.890 0.898 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 11 24 33 36 40 40 40 DISTCA CA (P) 27.50 60.00 82.50 90.00 100.00 40 DISTCA CA (RMS) 0.78 1.14 1.55 1.81 2.48 DISTCA ALL (N) 59 165 222 258 294 303 303 DISTALL ALL (P) 19.47 54.46 73.27 85.15 97.03 303 DISTALL ALL (RMS) 0.76 1.27 1.65 2.12 3.29 DISTALL END of the results output