####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS409_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS409_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 62 - 72 4.80 45.99 LCS_AVERAGE: 25.31 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 65 - 71 1.76 42.95 LCS_AVERAGE: 13.19 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 65 - 69 0.38 49.76 LONGEST_CONTINUOUS_SEGMENT: 5 72 - 76 0.78 36.17 LCS_AVERAGE: 9.44 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 4 5 10 3 4 4 4 5 5 5 5 6 7 8 8 10 10 10 10 10 10 11 11 LCS_GDT S 57 S 57 4 5 10 3 4 4 4 5 5 5 6 6 8 8 8 10 10 10 10 10 10 11 11 LCS_GDT C 58 C 58 4 5 10 3 4 4 4 5 5 5 5 6 7 8 8 10 10 10 10 10 10 11 11 LCS_GDT K 59 K 59 4 5 10 3 4 4 4 5 5 7 7 7 8 8 8 10 10 10 10 10 10 11 11 LCS_GDT G 60 G 60 4 5 10 3 4 4 4 5 5 7 7 7 8 8 8 10 10 10 10 11 12 12 12 LCS_GDT R 61 R 61 4 4 10 3 4 4 4 4 5 7 7 7 8 8 8 10 10 10 10 11 12 12 12 LCS_GDT C 62 C 62 4 5 11 3 4 4 5 5 5 7 7 7 8 8 9 10 10 10 10 11 12 12 12 LCS_GDT F 63 F 63 4 5 11 3 4 4 5 5 5 7 7 8 9 9 9 10 10 10 10 11 12 12 12 LCS_GDT E 64 E 64 4 6 11 3 4 4 5 5 6 7 8 8 9 9 9 10 10 10 10 11 12 12 12 LCS_GDT L 65 L 65 5 7 11 5 5 5 6 7 7 7 8 8 9 9 9 10 10 10 10 11 12 12 12 LCS_GDT Q 66 Q 66 5 7 11 5 5 5 6 7 7 7 8 8 9 9 9 10 10 10 10 11 12 12 12 LCS_GDT E 67 E 67 5 7 11 5 5 5 6 7 7 7 8 8 9 9 9 10 10 10 10 11 12 12 12 LCS_GDT V 68 V 68 5 7 11 5 5 5 6 7 7 7 8 8 9 9 9 10 10 10 10 11 12 12 12 LCS_GDT G 69 G 69 5 7 11 5 5 5 6 7 7 7 8 8 9 9 9 10 10 10 10 11 12 12 12 LCS_GDT P 70 P 70 4 7 11 3 4 4 6 7 7 7 8 8 9 9 9 10 10 10 10 11 12 12 12 LCS_GDT P 71 P 71 4 7 11 3 4 4 5 7 7 7 8 8 9 9 9 10 10 10 10 10 12 12 12 LCS_GDT D 72 D 72 5 6 11 3 4 5 6 6 6 7 8 8 8 8 9 9 9 10 10 10 11 11 11 LCS_GDT C 73 C 73 5 6 10 3 4 5 6 6 6 7 7 8 8 8 8 9 9 9 10 10 10 11 11 LCS_GDT R 74 R 74 5 6 10 3 4 5 6 6 6 7 7 8 8 8 8 9 9 9 10 10 10 11 11 LCS_GDT C 75 C 75 5 6 10 3 4 5 6 6 6 7 7 8 8 8 8 9 9 9 10 10 10 11 11 LCS_GDT D 76 D 76 5 6 10 3 4 5 6 6 6 7 7 8 8 8 8 9 9 9 10 10 10 11 11 LCS_GDT N 77 N 77 3 6 10 3 4 5 6 6 6 7 7 8 8 8 8 9 9 9 10 10 10 11 11 LCS_GDT L 78 L 78 3 4 10 3 3 3 4 4 4 5 6 7 7 8 8 8 8 9 10 10 10 11 11 LCS_GDT C 79 C 79 3 4 9 3 3 3 4 4 4 5 6 7 7 7 7 8 8 9 10 10 10 11 11 LCS_GDT K 80 K 80 3 4 9 0 3 3 4 4 4 5 6 7 7 7 7 8 8 9 10 10 10 11 11 LCS_GDT S 81 S 81 3 4 9 0 3 3 4 4 5 7 7 7 8 8 8 8 8 9 10 10 10 11 11 LCS_GDT Y 82 Y 82 3 6 10 0 3 3 4 5 7 7 7 7 8 8 8 10 10 11 11 11 11 11 11 LCS_GDT S 83 S 83 3 6 10 0 3 4 4 6 7 7 7 7 8 8 8 10 10 11 11 11 11 11 11 LCS_GDT S 84 S 84 3 6 10 3 3 4 4 6 7 7 7 7 8 8 8 10 10 11 11 11 11 11 12 LCS_GDT C 85 C 85 3 6 10 3 3 4 4 6 7 7 7 7 8 8 8 10 10 11 11 11 11 11 12 LCS_GDT C 86 C 86 3 6 10 3 3 4 4 6 7 7 7 7 8 8 8 10 10 11 11 11 11 11 12 LCS_GDT H 87 H 87 3 6 10 3 3 4 4 6 7 7 7 7 8 8 8 10 10 11 11 11 11 11 12 LCS_GDT D 88 D 88 3 6 10 3 3 4 4 6 7 7 7 7 8 8 8 10 10 11 11 11 11 11 12 LCS_GDT F 89 F 89 3 4 10 3 3 3 4 4 4 5 6 6 8 8 8 10 10 11 11 11 11 11 12 LCS_GDT D 90 D 90 3 4 10 3 3 3 4 4 4 5 6 6 6 8 8 10 10 11 11 11 11 11 12 LCS_GDT E 91 E 91 3 3 10 3 3 3 3 3 4 4 6 6 6 8 8 10 10 11 11 11 11 11 12 LCS_GDT L 92 L 92 3 3 10 3 3 3 3 3 4 4 5 6 6 7 8 9 9 11 11 11 11 11 12 LCS_GDT C 93 C 93 3 3 9 3 3 3 3 3 4 4 5 5 6 7 8 8 9 9 10 10 10 11 12 LCS_GDT L 94 L 94 3 3 9 3 3 3 3 3 4 4 5 5 5 7 8 8 9 9 10 10 10 11 12 LCS_GDT K 95 K 95 3 3 9 0 3 3 3 3 4 4 5 5 5 6 7 8 9 9 10 10 10 11 12 LCS_AVERAGE LCS_A: 15.98 ( 9.44 13.19 25.31 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 5 5 6 7 7 7 8 8 9 9 9 10 10 11 11 11 12 12 12 GDT PERCENT_AT 12.50 12.50 12.50 15.00 17.50 17.50 17.50 20.00 20.00 22.50 22.50 22.50 25.00 25.00 27.50 27.50 27.50 30.00 30.00 30.00 GDT RMS_LOCAL 0.38 0.38 0.38 1.12 1.76 1.76 1.76 2.27 2.27 3.13 3.13 3.13 4.01 4.01 5.15 5.15 5.15 5.95 5.95 5.95 GDT RMS_ALL_AT 49.76 49.76 49.76 49.32 42.95 42.95 42.95 44.34 44.34 46.36 46.36 46.36 47.41 47.41 51.77 51.77 51.77 49.74 49.74 49.74 # Checking swapping # possible swapping detected: E 67 E 67 # possible swapping detected: D 76 D 76 # possible swapping detected: D 90 D 90 # possible swapping detected: E 91 E 91 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 37.339 0 0.634 0.634 37.697 0.000 0.000 LGA S 57 S 57 31.028 0 0.137 0.703 33.092 0.000 0.000 LGA C 58 C 58 27.377 0 0.667 0.777 28.645 0.000 0.000 LGA K 59 K 59 24.477 0 0.117 0.914 31.683 0.000 0.000 LGA G 60 G 60 18.769 0 0.683 0.683 20.488 0.000 0.000 LGA R 61 R 61 16.006 0 0.677 1.527 24.492 0.000 0.000 LGA C 62 C 62 11.854 0 0.125 0.738 12.888 1.310 0.873 LGA F 63 F 63 8.151 0 0.595 1.297 11.546 10.952 4.502 LGA E 64 E 64 3.798 0 0.039 1.033 7.206 44.167 32.381 LGA L 65 L 65 1.160 0 0.677 0.651 4.212 66.071 59.167 LGA Q 66 Q 66 2.800 0 0.056 0.760 9.799 73.333 39.788 LGA E 67 E 67 2.088 0 0.148 1.252 10.186 65.238 35.026 LGA V 68 V 68 2.101 0 0.083 1.117 6.845 70.952 49.388 LGA G 69 G 69 1.582 0 0.197 0.197 3.645 65.476 65.476 LGA P 70 P 70 1.318 0 0.057 0.224 1.543 81.429 80.204 LGA P 71 P 71 2.104 0 0.607 0.641 5.450 52.381 55.646 LGA D 72 D 72 7.795 3 0.239 0.324 10.261 8.452 4.583 LGA C 73 C 73 12.896 0 0.111 0.122 16.502 0.000 0.000 LGA R 74 R 74 19.814 0 0.073 1.324 26.813 0.000 0.000 LGA C 75 C 75 25.858 0 0.532 0.969 30.162 0.000 0.000 LGA D 76 D 76 31.441 0 0.198 0.998 32.956 0.000 0.000 LGA N 77 N 77 36.488 0 0.675 0.721 37.768 0.000 0.000 LGA L 78 L 78 37.852 0 0.614 1.442 41.424 0.000 0.000 LGA C 79 C 79 36.682 0 0.647 0.808 37.823 0.000 0.000 LGA K 80 K 80 40.987 0 0.633 1.049 43.056 0.000 0.000 LGA S 81 S 81 43.581 0 0.628 0.783 46.556 0.000 0.000 LGA Y 82 Y 82 43.620 0 0.638 0.934 52.576 0.000 0.000 LGA S 83 S 83 44.793 0 0.366 0.654 45.388 0.000 0.000 LGA S 84 S 84 47.763 0 0.655 0.852 49.313 0.000 0.000 LGA C 85 C 85 53.042 0 0.147 0.907 56.624 0.000 0.000 LGA C 86 C 86 55.148 0 0.056 0.818 57.463 0.000 0.000 LGA H 87 H 87 56.940 0 0.641 1.025 60.669 0.000 0.000 LGA D 88 D 88 63.099 0 0.478 1.250 65.529 0.000 0.000 LGA F 89 F 89 67.468 0 0.557 0.564 72.548 0.000 0.000 LGA D 90 D 90 71.340 0 0.605 1.128 73.122 0.000 0.000 LGA E 91 E 91 73.992 0 0.547 0.928 78.409 0.000 0.000 LGA L 92 L 92 79.502 0 0.686 1.011 82.087 0.000 0.000 LGA C 93 C 93 84.258 0 0.652 0.602 88.031 0.000 0.000 LGA L 94 L 94 88.067 0 0.441 1.019 89.354 0.000 0.000 LGA K 95 K 95 92.443 0 0.030 1.677 96.093 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 32.308 32.173 32.610 13.494 10.676 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 8 2.27 18.750 17.442 0.338 LGA_LOCAL RMSD: 2.265 Number of atoms: 8 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 44.338 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 32.308 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.009177 * X + 0.945592 * Y + -0.325227 * Z + 275.008728 Y_new = -0.808236 * X + 0.184491 * Y + 0.559212 * Z + 119.796844 Z_new = 0.588787 * X + 0.267992 * Y + 0.762568 * Z + 123.673172 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.582150 -0.629558 0.337951 [DEG: -90.6505 -36.0710 19.3632 ] ZXZ: -2.614827 0.703523 1.143660 [DEG: -149.8185 40.3089 65.5269 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS409_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS409_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 8 2.27 17.442 32.31 REMARK ---------------------------------------------------------- MOLECULE T0543TS409_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT 2rh6A ATOM 422 N GLY 56 4.168 80.470 -1.952 1.00124.63 N ATOM 423 CA GLY 56 4.065 79.200 -1.303 1.00124.63 C ATOM 424 C GLY 56 5.350 78.478 -1.531 1.00124.63 C ATOM 425 O GLY 56 6.077 78.764 -2.481 1.00124.63 O ATOM 426 N SER 57 5.658 77.512 -0.646 1.00178.40 N ATOM 427 CA SER 57 6.868 76.763 -0.788 1.00178.40 C ATOM 428 CB SER 57 7.977 77.190 0.188 1.00178.40 C ATOM 429 OG SER 57 8.378 78.525 -0.087 1.00178.40 O ATOM 430 C SER 57 6.537 75.342 -0.486 1.00178.40 C ATOM 431 O SER 57 5.500 75.045 0.107 1.00178.40 O ATOM 432 N CYS 58 7.414 74.414 -0.913 1.00 98.39 N ATOM 433 CA CYS 58 7.171 73.029 -0.653 1.00 98.39 C ATOM 434 CB CYS 58 8.082 72.080 -1.450 1.00 98.39 C ATOM 435 SG CYS 58 7.744 70.330 -1.096 1.00 98.39 S ATOM 436 C CYS 58 7.431 72.794 0.797 1.00 98.39 C ATOM 437 O CYS 58 8.295 73.431 1.397 1.00 98.39 O ATOM 438 N LYS 59 6.654 71.878 1.402 1.00246.91 N ATOM 439 CA LYS 59 6.832 71.574 2.789 1.00246.91 C ATOM 440 CB LYS 59 5.573 70.995 3.453 1.00246.91 C ATOM 441 CG LYS 59 5.123 69.666 2.842 1.00246.91 C ATOM 442 CD LYS 59 4.075 68.927 3.675 1.00246.91 C ATOM 443 CE LYS 59 3.628 67.599 3.059 1.00246.91 C ATOM 444 NZ LYS 59 2.880 67.844 1.806 1.00246.91 N ATOM 445 C LYS 59 7.909 70.547 2.887 1.00246.91 C ATOM 446 O LYS 59 8.098 69.740 1.977 1.00246.91 O ATOM 447 N GLY 60 8.666 70.569 4.000 1.00136.36 N ATOM 448 CA GLY 60 9.701 69.598 4.181 1.00136.36 C ATOM 449 C GLY 60 10.163 69.709 5.594 1.00136.36 C ATOM 450 O GLY 60 10.054 70.765 6.214 1.00136.36 O ATOM 451 N ARG 61 10.699 68.603 6.142 1.00276.22 N ATOM 452 CA ARG 61 11.176 68.636 7.491 1.00276.22 C ATOM 453 CB ARG 61 10.326 67.804 8.465 1.00276.22 C ATOM 454 CG ARG 61 10.737 67.965 9.930 1.00276.22 C ATOM 455 CD ARG 61 9.924 67.093 10.889 1.00276.22 C ATOM 456 NE ARG 61 8.489 67.462 10.728 1.00276.22 N ATOM 457 CZ ARG 61 7.946 68.462 11.483 1.00276.22 C ATOM 458 NH1 ARG 61 8.720 69.138 12.382 1.00276.22 H ATOM 459 NH2 ARG 61 6.628 68.785 11.338 1.00276.22 H ATOM 460 C ARG 61 12.542 68.040 7.478 1.00276.22 C ATOM 461 O ARG 61 12.840 67.163 6.667 1.00276.22 O ATOM 462 N CYS 62 13.426 68.523 8.372 1.00111.54 N ATOM 463 CA CYS 62 14.746 67.977 8.415 1.00111.54 C ATOM 464 CB CYS 62 15.849 68.999 8.088 1.00111.54 C ATOM 465 SG CYS 62 17.514 68.272 8.156 1.00111.54 S ATOM 466 C CYS 62 14.983 67.506 9.811 1.00111.54 C ATOM 467 O CYS 62 14.438 68.057 10.766 1.00111.54 O ATOM 468 N PHE 63 15.793 66.441 9.956 1.00268.43 N ATOM 469 CA PHE 63 16.104 65.949 11.265 1.00268.43 C ATOM 470 CB PHE 63 15.709 64.478 11.480 1.00268.43 C ATOM 471 CG PHE 63 16.014 64.119 12.894 1.00268.43 C ATOM 472 CD1 PHE 63 15.126 64.437 13.897 1.00268.43 C ATOM 473 CD2 PHE 63 17.178 63.463 13.220 1.00268.43 C ATOM 474 CE1 PHE 63 15.396 64.109 15.205 1.00268.43 C ATOM 475 CE2 PHE 63 17.453 63.131 14.527 1.00268.43 C ATOM 476 CZ PHE 63 16.563 63.454 15.522 1.00268.43 C ATOM 477 C PHE 63 17.586 66.043 11.392 1.00268.43 C ATOM 478 O PHE 63 18.313 65.822 10.424 1.00268.43 O ATOM 479 N GLU 64 18.081 66.396 12.592 1.00326.44 N ATOM 480 CA GLU 64 19.499 66.516 12.746 1.00326.44 C ATOM 481 CB GLU 64 19.948 67.885 13.281 1.00326.44 C ATOM 482 CG GLU 64 21.466 68.053 13.330 1.00326.44 C ATOM 483 CD GLU 64 21.965 68.200 11.899 1.00326.44 C ATOM 484 OE1 GLU 64 21.162 67.941 10.963 1.00326.44 O ATOM 485 OE2 GLU 64 23.156 68.573 11.722 1.00326.44 O ATOM 486 C GLU 64 19.940 65.489 13.730 1.00326.44 C ATOM 487 O GLU 64 19.249 65.206 14.707 1.00326.44 O ATOM 488 N LEU 65 21.117 64.883 13.475 1.00219.58 N ATOM 489 CA LEU 65 21.632 63.896 14.371 1.00219.58 C ATOM 490 CB LEU 65 22.130 62.622 13.667 1.00219.58 C ATOM 491 CG LEU 65 21.014 61.831 12.962 1.00219.58 C ATOM 492 CD1 LEU 65 21.569 60.571 12.281 1.00219.58 C ATOM 493 CD2 LEU 65 19.855 61.522 13.923 1.00219.58 C ATOM 494 C LEU 65 22.815 64.502 15.051 1.00219.58 C ATOM 495 O LEU 65 23.621 65.189 14.424 1.00219.58 O ATOM 496 N GLN 66 22.936 64.278 16.371 1.00279.19 N ATOM 497 CA GLN 66 24.055 64.822 17.080 1.00279.19 C ATOM 498 CB GLN 66 23.659 65.748 18.244 1.00279.19 C ATOM 499 CG GLN 66 24.857 66.328 18.999 1.00279.19 C ATOM 500 CD GLN 66 24.326 67.222 20.112 1.00279.19 C ATOM 501 OE1 GLN 66 23.119 67.301 20.341 1.00279.19 O ATOM 502 NE2 GLN 66 25.251 67.915 20.830 1.00279.19 N ATOM 503 C GLN 66 24.799 63.672 17.665 1.00279.19 C ATOM 504 O GLN 66 24.206 62.666 18.051 1.00279.19 O ATOM 505 N GLU 67 26.137 63.785 17.724 1.00242.19 N ATOM 506 CA GLU 67 26.917 62.731 18.296 1.00242.19 C ATOM 507 CB GLU 67 28.090 62.278 17.412 1.00242.19 C ATOM 508 CG GLU 67 28.910 61.138 18.021 1.00242.19 C ATOM 509 CD GLU 67 30.027 60.791 17.047 1.00242.19 C ATOM 510 OE1 GLU 67 30.095 61.440 15.969 1.00242.19 O ATOM 511 OE2 GLU 67 30.824 59.869 17.367 1.00242.19 O ATOM 512 C GLU 67 27.487 63.264 19.565 1.00242.19 C ATOM 513 O GLU 67 27.899 64.421 19.634 1.00242.19 O ATOM 514 N VAL 68 27.508 62.429 20.620 1.00106.24 N ATOM 515 CA VAL 68 28.031 62.887 21.871 1.00106.24 C ATOM 516 CB VAL 68 26.998 62.968 22.955 1.00106.24 C ATOM 517 CG1 VAL 68 26.466 61.551 23.229 1.00106.24 C ATOM 518 CG2 VAL 68 27.633 63.641 24.184 1.00106.24 C ATOM 519 C VAL 68 29.060 61.907 22.316 1.00106.24 C ATOM 520 O VAL 68 29.041 60.742 21.921 1.00106.24 O ATOM 521 N GLY 69 30.012 62.376 23.143 1.00 88.46 N ATOM 522 CA GLY 69 31.029 61.507 23.650 1.00 88.46 C ATOM 523 C GLY 69 31.706 62.240 24.757 1.00 88.46 C ATOM 524 O GLY 69 31.717 63.468 24.800 1.00 88.46 O ATOM 525 N PRO 70 32.269 61.497 25.665 1.00146.11 N ATOM 526 CA PRO 70 32.962 62.132 26.750 1.00146.11 C ATOM 527 CD PRO 70 31.637 60.254 26.082 1.00146.11 C ATOM 528 CB PRO 70 33.093 61.076 27.843 1.00146.11 C ATOM 529 CG PRO 70 31.890 60.148 27.594 1.00146.11 C ATOM 530 C PRO 70 34.266 62.664 26.264 1.00146.11 C ATOM 531 O PRO 70 34.814 62.117 25.308 1.00146.11 O ATOM 532 N PRO 71 34.755 63.707 26.868 1.00147.60 N ATOM 533 CA PRO 71 36.029 64.214 26.449 1.00147.60 C ATOM 534 CD PRO 71 33.869 64.771 27.311 1.00147.60 C ATOM 535 CB PRO 71 36.110 65.643 26.978 1.00147.60 C ATOM 536 CG PRO 71 34.636 66.080 27.061 1.00147.60 C ATOM 537 C PRO 71 37.103 63.318 26.963 1.00147.60 C ATOM 538 O PRO 71 36.902 62.680 27.996 1.00147.60 O ATOM 539 N ASP 72 38.245 63.238 26.255 1.00158.53 N ATOM 540 CA ASP 72 39.313 62.414 26.728 1.00158.53 C ATOM 541 CB ASP 72 39.846 61.433 25.668 1.00158.53 C ATOM 542 CG ASP 72 40.870 60.521 26.329 1.00158.53 C ATOM 543 OD1 ASP 72 41.144 60.716 27.544 1.00158.53 O ATOM 544 OD2 ASP 72 41.395 59.616 25.626 1.00158.53 O ATOM 545 C ASP 72 40.433 63.329 27.090 1.00158.53 C ATOM 546 O ASP 72 41.124 63.852 26.217 1.00158.53 O ATOM 547 N CYS 73 40.632 63.564 28.399 1.00106.42 N ATOM 548 CA CYS 73 41.705 64.423 28.794 1.00106.42 C ATOM 549 CB CYS 73 41.240 65.731 29.458 1.00106.42 C ATOM 550 SG CYS 73 40.360 65.440 31.022 1.00106.42 S ATOM 551 C CYS 73 42.522 63.686 29.800 1.00106.42 C ATOM 552 O CYS 73 41.986 63.003 30.671 1.00106.42 O ATOM 553 N ARG 74 43.858 63.794 29.686 1.00303.32 N ATOM 554 CA ARG 74 44.717 63.155 30.634 1.00303.32 C ATOM 555 CB ARG 74 45.530 61.991 30.042 1.00303.32 C ATOM 556 CG ARG 74 46.332 61.207 31.084 1.00303.32 C ATOM 557 CD ARG 74 45.457 60.389 32.035 1.00303.32 C ATOM 558 NE ARG 74 46.360 59.669 32.977 1.00303.32 N ATOM 559 CZ ARG 74 46.783 60.280 34.122 1.00303.32 C ATOM 560 NH1 ARG 74 46.380 61.552 34.408 1.00303.32 H ATOM 561 NH2 ARG 74 47.607 59.615 34.985 1.00303.32 H ATOM 562 C ARG 74 45.687 64.199 31.073 1.00303.32 C ATOM 563 O ARG 74 46.096 65.046 30.281 1.00303.32 O ATOM 564 N CYS 75 46.070 64.183 32.362 1.00108.21 N ATOM 565 CA CYS 75 46.995 65.181 32.806 1.00108.21 C ATOM 566 CB CYS 75 46.496 65.990 34.016 1.00108.21 C ATOM 567 SG CYS 75 46.254 64.958 35.493 1.00108.21 S ATOM 568 C CYS 75 48.249 64.493 33.222 1.00108.21 C ATOM 569 O CYS 75 48.220 63.521 33.974 1.00108.21 O ATOM 570 N ASP 76 49.397 64.979 32.713 1.00201.12 N ATOM 571 CA ASP 76 50.649 64.410 33.103 1.00201.12 C ATOM 572 CB ASP 76 51.513 63.927 31.919 1.00201.12 C ATOM 573 CG ASP 76 51.823 65.099 30.995 1.00201.12 C ATOM 574 OD1 ASP 76 50.924 65.962 30.812 1.00201.12 O ATOM 575 OD2 ASP 76 52.960 65.142 30.456 1.00201.12 O ATOM 576 C ASP 76 51.392 65.461 33.861 1.00201.12 C ATOM 577 O ASP 76 51.715 66.523 33.330 1.00201.12 O ATOM 578 N ASN 77 51.653 65.204 35.155 1.00183.26 N ATOM 579 CA ASN 77 52.366 66.182 35.918 1.00183.26 C ATOM 580 CB ASN 77 51.533 66.807 37.049 1.00183.26 C ATOM 581 CG ASN 77 50.432 67.640 36.408 1.00183.26 C ATOM 582 OD1 ASN 77 50.660 68.337 35.420 1.00183.26 O ATOM 583 ND2 ASN 77 49.199 67.562 36.978 1.00183.26 N ATOM 584 C ASN 77 53.528 65.496 36.547 1.00183.26 C ATOM 585 O ASN 77 53.420 64.365 37.014 1.00183.26 O ATOM 586 N LEU 78 54.693 66.170 36.550 1.00180.32 N ATOM 587 CA LEU 78 55.851 65.600 37.162 1.00180.32 C ATOM 588 CB LEU 78 57.094 65.608 36.259 1.00180.32 C ATOM 589 CG LEU 78 56.941 64.739 34.997 1.00180.32 C ATOM 590 CD1 LEU 78 58.211 64.782 34.132 1.00180.32 C ATOM 591 CD2 LEU 78 56.511 63.308 35.355 1.00180.32 C ATOM 592 C LEU 78 56.165 66.447 38.347 1.00180.32 C ATOM 593 O LEU 78 56.172 67.673 38.258 1.00180.32 O ATOM 594 N CYS 79 56.412 65.809 39.505 1.00 66.79 N ATOM 595 CA CYS 79 56.738 66.579 40.665 1.00 66.79 C ATOM 596 CB CYS 79 55.793 66.334 41.854 1.00 66.79 C ATOM 597 SG CYS 79 54.091 66.873 41.511 1.00 66.79 S ATOM 598 C CYS 79 58.107 66.172 41.091 1.00 66.79 C ATOM 599 O CYS 79 58.412 64.984 41.182 1.00 66.79 O ATOM 600 N LYS 80 58.981 67.163 41.343 1.00194.18 N ATOM 601 CA LYS 80 60.305 66.853 41.787 1.00194.18 C ATOM 602 CB LYS 80 61.417 67.319 40.832 1.00194.18 C ATOM 603 CG LYS 80 61.410 66.612 39.475 1.00194.18 C ATOM 604 CD LYS 80 62.352 67.253 38.454 1.00194.18 C ATOM 605 CE LYS 80 61.969 68.684 38.074 1.00194.18 C ATOM 606 NZ LYS 80 62.965 69.241 37.131 1.00194.18 N ATOM 607 C LYS 80 60.506 67.583 43.070 1.00194.18 C ATOM 608 O LYS 80 59.946 68.660 43.275 1.00194.18 O ATOM 609 N SER 81 61.302 67.001 43.984 1.00173.31 N ATOM 610 CA SER 81 61.543 67.671 45.222 1.00173.31 C ATOM 611 CB SER 81 61.032 66.904 46.452 1.00173.31 C ATOM 612 OG SER 81 61.316 67.634 47.637 1.00173.31 O ATOM 613 C SER 81 63.021 67.801 45.369 1.00173.31 C ATOM 614 O SER 81 63.778 66.907 44.988 1.00173.31 O ATOM 615 N TYR 82 63.471 68.947 45.911 1.00257.55 N ATOM 616 CA TYR 82 64.874 69.142 46.111 1.00257.55 C ATOM 617 CB TYR 82 65.436 70.349 45.341 1.00257.55 C ATOM 618 CG TYR 82 66.892 70.438 45.639 1.00257.55 C ATOM 619 CD1 TYR 82 67.798 69.659 44.953 1.00257.55 C ATOM 620 CD2 TYR 82 67.352 71.302 46.604 1.00257.55 C ATOM 621 CE1 TYR 82 69.143 69.747 45.230 1.00257.55 C ATOM 622 CE2 TYR 82 68.694 71.393 46.884 1.00257.55 C ATOM 623 CZ TYR 82 69.591 70.614 46.197 1.00257.55 C ATOM 624 OH TYR 82 70.971 70.704 46.480 1.00257.55 H ATOM 625 C TYR 82 65.073 69.417 47.564 1.00257.55 C ATOM 626 O TYR 82 64.442 70.311 48.126 1.00257.55 O ATOM 627 N SER 83 65.951 68.632 48.215 1.00219.62 N ATOM 628 CA SER 83 66.204 68.875 49.602 1.00219.62 C ATOM 629 CB SER 83 65.419 67.948 50.546 1.00219.62 C ATOM 630 OG SER 83 65.726 68.254 51.897 1.00219.62 O ATOM 631 C SER 83 67.653 68.608 49.835 1.00219.62 C ATOM 632 O SER 83 68.245 67.730 49.209 1.00219.62 O ATOM 633 N SER 84 68.273 69.386 50.741 1.00201.69 N ATOM 634 CA SER 84 69.651 69.162 51.055 1.00201.69 C ATOM 635 CB SER 84 70.624 69.957 50.167 1.00201.69 C ATOM 636 OG SER 84 70.519 69.527 48.818 1.00201.69 O ATOM 637 C SER 84 69.859 69.622 52.456 1.00201.69 C ATOM 638 O SER 84 69.153 70.504 52.941 1.00201.69 O ATOM 639 N CYS 85 70.830 69.012 53.159 1.00 84.06 N ATOM 640 CA CYS 85 71.103 69.442 54.497 1.00 84.06 C ATOM 641 CB CYS 85 70.652 68.438 55.570 1.00 84.06 C ATOM 642 SG CYS 85 71.012 69.009 57.258 1.00 84.06 S ATOM 643 C CYS 85 72.582 69.581 54.616 1.00 84.06 C ATOM 644 O CYS 85 73.325 68.630 54.384 1.00 84.06 O ATOM 645 N CYS 86 73.057 70.791 54.966 1.00 82.87 N ATOM 646 CA CYS 86 74.465 70.971 55.135 1.00 82.87 C ATOM 647 CB CYS 86 75.180 71.474 53.871 1.00 82.87 C ATOM 648 SG CYS 86 76.968 71.688 54.120 1.00 82.87 S ATOM 649 C CYS 86 74.660 72.005 56.189 1.00 82.87 C ATOM 650 O CYS 86 73.969 73.022 56.207 1.00 82.87 O ATOM 651 N HIS 87 75.601 71.757 57.119 1.00220.80 N ATOM 652 CA HIS 87 75.869 72.738 58.126 1.00220.80 C ATOM 653 ND1 HIS 87 74.632 74.569 60.659 1.00220.80 N ATOM 654 CG HIS 87 75.454 73.472 60.517 1.00220.80 C ATOM 655 CB HIS 87 75.249 72.397 59.491 1.00220.80 C ATOM 656 NE2 HIS 87 76.220 74.760 62.203 1.00220.80 N ATOM 657 CD2 HIS 87 76.420 73.605 61.467 1.00220.80 C ATOM 658 CE1 HIS 87 75.137 75.305 61.681 1.00220.80 C ATOM 659 C HIS 87 77.350 72.777 58.307 1.00220.80 C ATOM 660 O HIS 87 77.955 71.798 58.740 1.00220.80 O ATOM 661 N ASP 88 77.981 73.914 57.959 1.00209.47 N ATOM 662 CA ASP 88 79.398 74.012 58.133 1.00209.47 C ATOM 663 CB ASP 88 80.189 73.915 56.816 1.00209.47 C ATOM 664 CG ASP 88 81.675 73.864 57.147 1.00209.47 C ATOM 665 OD1 ASP 88 82.023 73.963 58.354 1.00209.47 O ATOM 666 OD2 ASP 88 82.484 73.719 56.192 1.00209.47 O ATOM 667 C ASP 88 79.685 75.352 58.721 1.00209.47 C ATOM 668 O ASP 88 79.466 76.379 58.078 1.00209.47 O ATOM 669 N PHE 89 80.167 75.385 59.977 1.00236.12 N ATOM 670 CA PHE 89 80.490 76.654 60.552 1.00236.12 C ATOM 671 CB PHE 89 79.720 76.960 61.849 1.00236.12 C ATOM 672 CG PHE 89 80.130 78.321 62.295 1.00236.12 C ATOM 673 CD1 PHE 89 79.522 79.436 61.766 1.00236.12 C ATOM 674 CD2 PHE 89 81.118 78.484 63.239 1.00236.12 C ATOM 675 CE1 PHE 89 79.892 80.696 62.172 1.00236.12 C ATOM 676 CE2 PHE 89 81.493 79.743 63.648 1.00236.12 C ATOM 677 CZ PHE 89 80.880 80.851 63.115 1.00236.12 C ATOM 678 C PHE 89 81.940 76.617 60.898 1.00236.12 C ATOM 679 O PHE 89 82.421 75.654 61.493 1.00236.12 O ATOM 680 N ASP 90 82.687 77.665 60.506 1.00210.53 N ATOM 681 CA ASP 90 84.082 77.690 60.825 1.00210.53 C ATOM 682 CB ASP 90 84.997 77.541 59.598 1.00210.53 C ATOM 683 CG ASP 90 86.433 77.414 60.089 1.00210.53 C ATOM 684 OD1 ASP 90 86.642 77.464 61.330 1.00210.53 O ATOM 685 OD2 ASP 90 87.339 77.260 59.228 1.00210.53 O ATOM 686 C ASP 90 84.382 79.017 61.435 1.00210.53 C ATOM 687 O ASP 90 84.277 80.051 60.776 1.00210.53 O ATOM 688 N GLU 91 84.747 79.028 62.731 1.00254.25 N ATOM 689 CA GLU 91 85.096 80.271 63.350 1.00254.25 C ATOM 690 CB GLU 91 84.234 80.622 64.575 1.00254.25 C ATOM 691 CG GLU 91 84.336 79.596 65.707 1.00254.25 C ATOM 692 CD GLU 91 83.440 80.064 66.845 1.00254.25 C ATOM 693 OE1 GLU 91 82.802 81.140 66.693 1.00254.25 O ATOM 694 OE2 GLU 91 83.385 79.353 67.885 1.00254.25 O ATOM 695 C GLU 91 86.502 80.129 63.828 1.00254.25 C ATOM 696 O GLU 91 86.849 79.141 64.472 1.00254.25 O ATOM 697 N LEU 92 87.361 81.112 63.505 1.00219.35 N ATOM 698 CA LEU 92 88.716 81.014 63.956 1.00219.35 C ATOM 699 CB LEU 92 89.743 80.938 62.815 1.00219.35 C ATOM 700 CG LEU 92 89.595 79.682 61.935 1.00219.35 C ATOM 701 CD1 LEU 92 88.253 79.684 61.186 1.00219.35 C ATOM 702 CD2 LEU 92 90.801 79.510 61.000 1.00219.35 C ATOM 703 C LEU 92 89.029 82.240 64.744 1.00219.35 C ATOM 704 O LEU 92 88.784 83.359 64.296 1.00219.35 O ATOM 705 N CYS 93 89.566 82.050 65.963 1.00 67.35 N ATOM 706 CA CYS 93 89.963 83.172 66.757 1.00 67.35 C ATOM 707 CB CYS 93 89.181 83.302 68.077 1.00 67.35 C ATOM 708 SG CYS 93 87.417 83.644 67.811 1.00 67.35 S ATOM 709 C CYS 93 91.392 82.935 67.109 1.00 67.35 C ATOM 710 O CYS 93 91.733 81.898 67.676 1.00 67.35 O ATOM 711 N LEU 94 92.279 83.886 66.763 1.00218.24 N ATOM 712 CA LEU 94 93.657 83.671 67.082 1.00218.24 C ATOM 713 CB LEU 94 94.570 83.605 65.845 1.00218.24 C ATOM 714 CG LEU 94 94.246 82.428 64.907 1.00218.24 C ATOM 715 CD1 LEU 94 94.501 81.077 65.594 1.00218.24 C ATOM 716 CD2 LEU 94 92.827 82.548 64.328 1.00218.24 C ATOM 717 C LEU 94 94.127 84.818 67.912 1.00218.24 C ATOM 718 O LEU 94 93.965 85.978 67.540 1.00218.24 O ATOM 719 N LYS 95 94.710 84.509 69.086 1.00281.61 N ATOM 720 CA LYS 95 95.257 85.543 69.910 1.00281.61 C ATOM 721 CB LYS 95 94.402 85.859 71.152 1.00281.61 C ATOM 722 CG LYS 95 94.822 87.126 71.905 1.00281.61 C ATOM 723 CD LYS 95 96.240 87.078 72.478 1.00281.61 C ATOM 724 CE LYS 95 96.398 86.100 73.645 1.00281.61 C ATOM 725 NZ LYS 95 97.795 86.113 74.131 1.00281.61 N ATOM 726 C LYS 95 96.574 85.028 70.389 1.00281.61 C ATOM 727 O LYS 95 96.664 83.905 70.883 1.00281.61 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 93.06 30.8 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 97.16 28.6 56 100.0 56 ARMSMC BURIED . . . . . . . . 81.68 36.4 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 98.52 27.8 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 97.59 28.6 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 96.06 28.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 103.87 27.3 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.60 39.1 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 61.43 47.1 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 81.67 38.9 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 76.64 40.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 73.96 33.3 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 76.30 37.5 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 67.41 28.6 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 93.31 50.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 74.84 20.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 74.84 20.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 70.75 25.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 89.34 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 32.31 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 32.31 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.8077 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 32.84 29 100.0 29 CRMSCA BURIED . . . . . . . . 30.86 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 32.11 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 32.61 142 100.0 142 CRMSMC BURIED . . . . . . . . 30.80 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 33.28 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 33.37 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 34.42 103 100.0 103 CRMSSC BURIED . . . . . . . . 30.15 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 32.70 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 33.53 219 100.0 219 CRMSALL BURIED . . . . . . . . 30.42 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 157.818 0.720 0.755 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 165.196 0.737 0.774 29 100.0 29 ERRCA BURIED . . . . . . . . 138.365 0.676 0.706 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 159.046 0.723 0.758 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 167.067 0.742 0.778 142 100.0 142 ERRMC BURIED . . . . . . . . 138.337 0.675 0.706 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 187.525 0.752 0.781 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 189.186 0.752 0.780 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 190.308 0.757 0.787 103 100.0 103 ERRSC BURIED . . . . . . . . 180.357 0.739 0.764 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 171.909 0.736 0.768 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 177.088 0.747 0.781 219 100.0 219 ERRALL BURIED . . . . . . . . 158.407 0.706 0.735 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 0 9 40 40 DISTCA CA (P) 0.00 0.00 0.00 0.00 22.50 40 DISTCA CA (RMS) 0.00 0.00 0.00 0.00 8.17 DISTCA ALL (N) 1 1 2 6 61 303 303 DISTALL ALL (P) 0.33 0.33 0.66 1.98 20.13 303 DISTALL ALL (RMS) 0.63 0.63 1.92 3.37 7.90 DISTALL END of the results output