####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS400_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS400_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 56 - 76 4.75 16.59 LCS_AVERAGE: 48.88 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 81 - 92 1.97 23.12 LCS_AVERAGE: 20.75 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 82 - 87 0.93 22.67 LCS_AVERAGE: 11.12 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 4 8 21 3 6 6 9 10 10 11 16 18 18 19 19 20 20 20 20 20 22 23 25 LCS_GDT S 57 S 57 4 8 21 3 6 6 9 10 10 12 16 18 18 19 19 20 20 20 20 20 22 23 25 LCS_GDT C 58 C 58 4 8 21 3 6 6 9 10 10 12 16 18 18 19 19 20 20 20 20 20 22 23 25 LCS_GDT K 59 K 59 5 8 21 3 6 6 9 10 10 12 16 18 18 19 19 20 20 20 20 20 22 23 25 LCS_GDT G 60 G 60 5 8 21 3 4 6 8 8 10 12 16 18 18 19 19 20 20 20 20 20 22 23 25 LCS_GDT R 61 R 61 5 8 21 3 4 5 6 8 10 12 16 18 18 19 19 20 20 20 20 20 22 23 25 LCS_GDT C 62 C 62 5 8 21 3 6 6 9 10 10 12 16 18 18 19 19 20 20 20 20 20 22 23 25 LCS_GDT F 63 F 63 5 8 21 3 6 6 9 10 10 12 16 18 18 19 19 20 20 20 20 20 22 23 25 LCS_GDT E 64 E 64 5 8 21 4 4 6 9 10 10 12 16 18 18 19 19 20 20 20 20 20 22 23 25 LCS_GDT L 65 L 65 5 7 21 4 4 6 9 10 10 12 16 18 18 19 19 20 20 20 20 20 22 23 25 LCS_GDT Q 66 Q 66 5 7 21 4 4 6 6 6 9 11 15 18 18 19 19 20 20 20 20 20 22 23 25 LCS_GDT E 67 E 67 5 7 21 4 4 6 6 6 9 12 16 18 18 18 19 20 20 20 20 20 21 22 22 LCS_GDT V 68 V 68 4 7 21 4 4 4 5 6 9 12 16 18 18 19 19 20 20 20 20 20 22 23 25 LCS_GDT G 69 G 69 4 6 21 4 4 4 5 7 10 12 16 18 18 19 19 20 20 20 20 20 22 23 25 LCS_GDT P 70 P 70 4 6 21 3 3 4 5 7 10 10 16 18 18 19 19 20 20 20 20 20 22 23 25 LCS_GDT P 71 P 71 4 7 21 3 3 4 6 6 10 10 16 18 18 19 19 20 20 20 20 20 22 23 25 LCS_GDT D 72 D 72 3 7 21 3 3 5 8 10 10 11 16 18 18 19 19 20 20 20 20 20 22 23 25 LCS_GDT C 73 C 73 4 7 21 3 4 5 9 10 10 12 16 18 18 19 19 20 20 20 20 20 22 23 25 LCS_GDT R 74 R 74 4 7 21 3 4 6 8 8 9 10 12 13 18 19 19 20 20 20 20 20 22 23 25 LCS_GDT C 75 C 75 4 7 21 3 4 6 8 8 9 10 10 12 14 19 19 20 20 20 20 20 22 23 25 LCS_GDT D 76 D 76 4 7 21 3 4 6 8 8 9 10 10 10 12 12 14 14 15 15 17 20 22 23 25 LCS_GDT N 77 N 77 4 7 17 3 4 4 6 7 9 10 10 11 12 12 14 14 15 18 19 20 22 23 25 LCS_GDT L 78 L 78 4 5 18 3 4 4 4 6 7 8 9 9 10 14 15 17 18 18 19 19 20 23 25 LCS_GDT C 79 C 79 4 4 18 3 4 4 4 4 5 6 7 8 9 11 13 16 18 18 19 19 20 23 25 LCS_GDT K 80 K 80 4 4 18 3 4 4 4 4 5 6 7 8 13 16 16 17 18 18 19 19 22 23 25 LCS_GDT S 81 S 81 3 12 18 3 4 6 8 10 11 12 13 14 15 16 16 17 18 18 19 19 22 23 25 LCS_GDT Y 82 Y 82 6 12 18 3 4 5 6 10 11 12 13 14 15 16 16 17 18 18 19 19 20 21 21 LCS_GDT S 83 S 83 6 12 18 4 4 6 8 10 11 12 13 14 15 16 16 17 18 18 19 19 19 20 20 LCS_GDT S 84 S 84 6 12 18 4 4 6 8 10 11 12 13 14 15 16 16 17 18 18 19 19 19 20 20 LCS_GDT C 85 C 85 6 12 18 4 4 6 8 10 11 12 13 14 15 16 16 17 18 18 19 19 19 20 20 LCS_GDT C 86 C 86 6 12 18 3 4 6 8 10 11 12 13 14 15 16 16 17 18 18 19 19 19 20 20 LCS_GDT H 87 H 87 6 12 18 4 4 6 8 10 11 12 13 14 15 16 16 17 18 18 19 19 19 20 20 LCS_GDT D 88 D 88 5 12 18 3 5 5 5 10 11 12 13 14 15 16 16 17 18 18 19 19 19 20 20 LCS_GDT F 89 F 89 5 12 18 3 5 6 8 10 11 12 13 14 15 16 16 17 18 18 19 19 19 20 20 LCS_GDT D 90 D 90 5 12 18 3 5 6 8 10 11 12 13 14 15 16 16 17 18 18 19 19 19 20 20 LCS_GDT E 91 E 91 5 12 18 3 5 6 8 10 11 12 13 14 15 16 16 17 18 18 19 19 19 20 20 LCS_GDT L 92 L 92 5 12 18 3 5 5 5 10 11 12 13 14 15 16 16 17 18 18 19 19 19 20 20 LCS_GDT C 93 C 93 3 6 18 3 3 4 5 5 8 11 13 14 15 16 16 17 18 18 19 19 19 20 20 LCS_GDT L 94 L 94 3 4 18 3 3 4 5 5 9 10 13 14 15 16 16 17 18 18 19 19 19 20 20 LCS_GDT K 95 K 95 0 4 18 0 2 4 6 7 9 9 13 14 15 16 16 17 18 18 19 19 19 20 20 LCS_AVERAGE LCS_A: 26.92 ( 11.12 20.75 48.88 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 6 6 9 10 11 12 16 18 18 19 19 20 20 20 20 20 22 23 25 GDT PERCENT_AT 10.00 15.00 15.00 22.50 25.00 27.50 30.00 40.00 45.00 45.00 47.50 47.50 50.00 50.00 50.00 50.00 50.00 55.00 57.50 62.50 GDT RMS_LOCAL 0.15 0.54 0.54 1.48 1.49 1.76 1.97 3.12 3.31 3.31 3.79 3.58 3.89 3.89 3.89 3.89 3.89 5.96 6.45 6.92 GDT RMS_ALL_AT 21.95 17.42 17.42 17.06 23.50 23.55 23.12 17.06 17.24 17.24 16.63 17.01 16.82 16.82 16.82 16.82 16.82 16.73 17.01 17.52 # Checking swapping # possible swapping detected: E 64 E 64 # possible swapping detected: E 67 E 67 # possible swapping detected: D 76 D 76 # possible swapping detected: E 91 E 91 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 2.712 0 0.082 0.082 4.482 54.286 54.286 LGA S 57 S 57 1.833 0 0.215 0.622 3.243 70.833 67.698 LGA C 58 C 58 1.635 0 0.105 0.108 2.637 71.071 73.095 LGA K 59 K 59 1.699 0 0.409 0.698 9.214 79.405 47.672 LGA G 60 G 60 3.199 0 0.319 0.319 6.242 44.286 44.286 LGA R 61 R 61 2.598 0 0.310 1.170 12.066 69.286 30.563 LGA C 62 C 62 3.581 0 0.074 0.590 7.468 45.714 35.000 LGA F 63 F 63 3.504 0 0.167 1.212 7.967 50.119 29.957 LGA E 64 E 64 3.012 0 0.215 0.956 6.909 48.333 41.693 LGA L 65 L 65 3.831 0 0.038 1.223 9.194 46.667 29.702 LGA Q 66 Q 66 4.915 0 0.587 0.824 13.295 28.571 14.339 LGA E 67 E 67 4.615 0 0.090 1.247 9.414 42.024 23.069 LGA V 68 V 68 3.755 0 0.118 0.938 6.917 40.238 30.544 LGA G 69 G 69 3.583 0 0.685 0.685 3.583 51.905 51.905 LGA P 70 P 70 3.675 0 0.157 0.283 3.760 46.667 47.143 LGA P 71 P 71 3.993 0 0.190 0.556 8.054 57.262 36.735 LGA D 72 D 72 3.890 3 0.410 0.459 5.726 48.452 26.905 LGA C 73 C 73 1.582 0 0.078 0.687 5.298 49.881 56.190 LGA R 74 R 74 6.696 0 0.127 1.299 12.987 17.857 7.013 LGA C 75 C 75 8.089 0 0.408 0.361 10.247 2.976 9.444 LGA D 76 D 76 14.568 0 0.132 0.968 18.195 0.000 0.000 LGA N 77 N 77 17.702 0 0.623 1.081 20.296 0.000 0.000 LGA L 78 L 78 21.363 0 0.047 1.256 26.421 0.000 0.000 LGA C 79 C 79 19.381 0 0.607 0.870 19.381 0.000 0.000 LGA K 80 K 80 19.243 0 0.563 0.980 21.841 0.000 0.000 LGA S 81 S 81 22.350 0 0.568 0.828 23.257 0.000 0.000 LGA Y 82 Y 82 24.101 0 0.502 0.558 26.084 0.000 0.000 LGA S 83 S 83 23.548 0 0.393 0.683 25.709 0.000 0.000 LGA S 84 S 84 23.580 0 0.130 0.580 24.320 0.000 0.000 LGA C 85 C 85 23.316 0 0.752 0.680 25.711 0.000 0.000 LGA C 86 C 86 26.969 0 0.206 0.414 28.789 0.000 0.000 LGA H 87 H 87 27.184 0 0.546 1.092 32.402 0.000 0.000 LGA D 88 D 88 26.242 0 0.103 0.114 31.191 0.000 0.000 LGA F 89 F 89 25.073 0 0.248 1.644 25.468 0.000 0.000 LGA D 90 D 90 24.433 0 0.050 0.718 25.858 0.000 0.000 LGA E 91 E 91 25.431 0 0.253 1.079 28.810 0.000 0.000 LGA L 92 L 92 26.691 0 0.682 0.539 31.528 0.000 0.000 LGA C 93 C 93 25.921 0 0.259 0.660 27.737 0.000 0.000 LGA L 94 L 94 25.264 0 0.462 1.328 25.911 0.000 0.000 LGA K 95 K 95 28.505 0 0.617 0.934 33.289 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 13.583 13.608 14.664 24.146 18.931 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 16 3.12 31.875 30.122 0.496 LGA_LOCAL RMSD: 3.124 Number of atoms: 16 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 17.056 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 13.583 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.617125 * X + -0.052580 * Y + 0.785107 * Z + -70.654068 Y_new = 0.249093 * X + 0.959505 * Y + -0.131537 * Z + 20.512022 Z_new = -0.746398 * X + 0.276739 * Y + 0.605232 * Z + 47.109276 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.383636 0.842633 0.428863 [DEG: 21.9807 48.2793 24.5720 ] ZXZ: 1.404797 0.920739 -1.215742 [DEG: 80.4890 52.7545 -69.6569 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS400_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS400_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 16 3.12 30.122 13.58 REMARK ---------------------------------------------------------- MOLECULE T0543TS400_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT N/A ATOM 422 N GLY 56 34.432 76.405 19.596 1.00 0.00 N ATOM 423 CA GLY 56 35.061 75.405 18.844 1.00 0.00 C ATOM 424 C GLY 56 34.242 74.867 17.773 1.00 0.00 C ATOM 425 O GLY 56 34.558 73.819 17.202 1.00 0.00 O ATOM 426 N SER 57 33.262 75.701 17.442 1.00 0.00 N ATOM 427 CA SER 57 32.543 75.710 16.261 1.00 0.00 C ATOM 428 C SER 57 31.728 74.516 16.381 1.00 0.00 C ATOM 429 O SER 57 32.057 73.422 15.899 1.00 0.00 O ATOM 430 CB SER 57 33.530 75.674 15.056 1.00 0.00 C ATOM 431 OG SER 57 34.262 76.876 14.896 1.00 0.00 O ATOM 432 N CYS 58 30.548 74.843 16.827 1.00 0.00 N ATOM 433 CA CYS 58 29.536 73.984 16.400 1.00 0.00 C ATOM 434 C CYS 58 29.311 73.883 14.935 1.00 0.00 C ATOM 435 O CYS 58 28.642 72.985 14.417 1.00 0.00 O ATOM 436 CB CYS 58 28.149 74.367 16.976 1.00 0.00 C ATOM 437 SG CYS 58 28.132 74.248 18.758 1.00 0.00 S ATOM 438 N LYS 59 29.807 74.921 14.285 1.00 0.00 N ATOM 439 CA LYS 59 29.727 75.076 12.903 1.00 0.00 C ATOM 440 C LYS 59 28.317 75.149 12.419 1.00 0.00 C ATOM 441 O LYS 59 27.882 74.555 11.432 1.00 0.00 O ATOM 442 CB LYS 59 30.493 73.951 12.144 1.00 0.00 C ATOM 443 CG LYS 59 31.996 73.947 12.407 1.00 0.00 C ATOM 444 CD LYS 59 32.720 72.837 11.657 1.00 0.00 C ATOM 445 CE LYS 59 34.226 72.851 11.969 1.00 0.00 C ATOM 446 NZ LYS 59 34.906 71.743 11.277 1.00 0.00 N ATOM 447 N GLY 60 27.624 75.845 13.270 1.00 0.00 N ATOM 448 CA GLY 60 26.277 75.992 13.117 1.00 0.00 C ATOM 449 C GLY 60 25.526 75.510 14.251 1.00 0.00 C ATOM 450 O GLY 60 24.692 76.201 14.838 1.00 0.00 O ATOM 451 N ARG 61 25.681 74.224 14.365 1.00 0.00 N ATOM 452 CA ARG 61 24.479 73.511 14.513 1.00 0.00 C ATOM 453 C ARG 61 24.826 72.142 14.410 1.00 0.00 C ATOM 454 O ARG 61 24.336 71.425 13.552 1.00 0.00 O ATOM 455 CB ARG 61 23.428 73.850 13.356 1.00 0.00 C ATOM 456 CG ARG 61 23.780 73.434 11.900 1.00 0.00 C ATOM 457 CD ARG 61 22.665 73.745 10.935 1.00 0.00 C ATOM 458 NE ARG 61 23.033 73.228 9.619 1.00 0.00 N ATOM 459 CZ ARG 61 22.763 71.997 9.173 1.00 0.00 C ATOM 460 NH1 ARG 61 23.189 71.654 7.951 1.00 0.00 H ATOM 461 NH2 ARG 61 22.084 71.136 9.933 1.00 0.00 H ATOM 462 N CYS 62 25.591 71.758 15.383 1.00 0.00 N ATOM 463 CA CYS 62 25.397 70.429 15.544 1.00 0.00 C ATOM 464 C CYS 62 24.691 70.027 16.769 1.00 0.00 C ATOM 465 O CYS 62 24.798 70.622 17.833 1.00 0.00 O ATOM 466 CB CYS 62 26.760 69.706 15.237 1.00 0.00 C ATOM 467 SG CYS 62 28.370 70.288 15.838 1.00 0.00 S ATOM 468 N PHE 63 23.887 69.008 16.500 1.00 0.00 N ATOM 469 CA PHE 63 23.279 68.227 17.466 1.00 0.00 C ATOM 470 C PHE 63 22.841 66.856 17.075 1.00 0.00 C ATOM 471 O PHE 63 21.679 66.496 17.199 1.00 0.00 O ATOM 472 CB PHE 63 22.182 68.943 18.351 1.00 0.00 C ATOM 473 CG PHE 63 21.644 68.228 19.571 1.00 0.00 C ATOM 474 CD1 PHE 63 22.371 67.183 20.118 1.00 0.00 C ATOM 475 CD2 PHE 63 20.358 68.497 20.058 1.00 0.00 C ATOM 476 CE1 PHE 63 21.902 66.436 21.209 1.00 0.00 C ATOM 477 CE2 PHE 63 19.875 67.774 21.172 1.00 0.00 C ATOM 478 CZ PHE 63 20.660 66.779 21.771 1.00 0.00 C ATOM 479 N GLU 64 23.748 66.029 16.611 1.00 0.00 N ATOM 480 CA GLU 64 23.288 64.760 16.155 1.00 0.00 C ATOM 481 C GLU 64 23.199 63.774 17.279 1.00 0.00 C ATOM 482 O GLU 64 24.204 63.200 17.652 1.00 0.00 O ATOM 483 CB GLU 64 24.352 64.289 15.136 1.00 0.00 C ATOM 484 CG GLU 64 24.280 65.092 13.817 1.00 0.00 C ATOM 485 CD GLU 64 25.111 64.537 12.684 1.00 0.00 C ATOM 486 OE1 GLU 64 24.972 63.324 12.419 1.00 0.00 O ATOM 487 OE2 GLU 64 25.798 65.380 12.060 1.00 0.00 O ATOM 488 N LEU 65 21.980 63.629 17.804 1.00 0.00 N ATOM 489 CA LEU 65 21.756 62.953 19.055 1.00 0.00 C ATOM 490 C LEU 65 22.020 61.483 19.037 1.00 0.00 C ATOM 491 O LEU 65 22.346 60.997 20.096 1.00 0.00 O ATOM 492 CB LEU 65 20.304 63.061 19.525 1.00 0.00 C ATOM 493 CG LEU 65 20.049 62.298 20.895 1.00 0.00 C ATOM 494 CD1 LEU 65 18.977 62.872 21.701 1.00 0.00 C ATOM 495 CD2 LEU 65 19.572 60.835 20.816 1.00 0.00 C ATOM 496 N GLN 66 21.638 60.725 18.013 1.00 0.00 N ATOM 497 CA GLN 66 21.383 59.331 18.355 1.00 0.00 C ATOM 498 C GLN 66 22.566 58.533 18.745 1.00 0.00 C ATOM 499 O GLN 66 22.605 57.888 19.795 1.00 0.00 O ATOM 500 CB GLN 66 20.704 58.563 17.202 1.00 0.00 C ATOM 501 CG GLN 66 20.437 57.054 17.469 1.00 0.00 C ATOM 502 CD GLN 66 19.695 56.372 16.333 1.00 0.00 C ATOM 503 OE1 GLN 66 20.057 56.529 15.171 1.00 0.00 O ATOM 504 NE2 GLN 66 18.657 55.617 16.657 1.00 0.00 N ATOM 505 N GLU 67 23.524 58.633 17.856 1.00 0.00 N ATOM 506 CA GLU 67 24.769 58.094 18.156 1.00 0.00 C ATOM 507 C GLU 67 25.683 59.210 18.253 1.00 0.00 C ATOM 508 O GLU 67 25.953 59.932 17.283 1.00 0.00 O ATOM 509 CB GLU 67 25.197 57.144 17.014 1.00 0.00 C ATOM 510 CG GLU 67 26.438 56.287 17.365 1.00 0.00 C ATOM 511 CD GLU 67 26.838 55.302 16.269 1.00 0.00 C ATOM 512 OE1 GLU 67 26.080 55.167 15.289 1.00 0.00 O ATOM 513 OE2 GLU 67 27.919 54.697 16.438 1.00 0.00 O ATOM 514 N VAL 68 26.037 59.381 19.500 1.00 0.00 N ATOM 515 CA VAL 68 26.732 60.543 19.793 1.00 0.00 C ATOM 516 C VAL 68 28.180 60.265 19.986 1.00 0.00 C ATOM 517 O VAL 68 28.631 59.235 20.498 1.00 0.00 O ATOM 518 CB VAL 68 26.207 61.330 20.975 1.00 0.00 C ATOM 519 CG1 VAL 68 24.898 61.892 20.548 1.00 0.00 C ATOM 520 CG2 VAL 68 25.989 60.516 22.238 1.00 0.00 C ATOM 521 N GLY 69 28.838 61.368 19.719 1.00 0.00 N ATOM 522 CA GLY 69 30.229 61.546 19.870 1.00 0.00 C ATOM 523 C GLY 69 30.791 62.115 21.114 1.00 0.00 C ATOM 524 O GLY 69 32.021 62.203 21.223 1.00 0.00 O ATOM 525 N PRO 70 29.907 62.340 22.079 1.00 0.00 N ATOM 526 CA PRO 70 29.931 63.410 23.073 1.00 0.00 C ATOM 527 C PRO 70 31.161 64.061 23.288 1.00 0.00 C ATOM 528 O PRO 70 32.144 63.497 23.806 1.00 0.00 O ATOM 529 CB PRO 70 29.705 62.682 24.398 1.00 0.00 C ATOM 530 CG PRO 70 29.846 61.200 24.141 1.00 0.00 C ATOM 531 CD PRO 70 29.590 61.072 22.694 1.00 0.00 C ATOM 532 N PRO 71 31.018 65.291 22.898 1.00 0.00 N ATOM 533 CA PRO 71 32.217 65.887 22.976 1.00 0.00 C ATOM 534 C PRO 71 32.783 66.390 24.268 1.00 0.00 C ATOM 535 O PRO 71 33.950 66.730 24.248 1.00 0.00 O ATOM 536 CB PRO 71 32.050 67.122 22.057 1.00 0.00 C ATOM 537 CG PRO 71 30.966 66.759 21.054 1.00 0.00 C ATOM 538 CD PRO 71 30.121 65.797 21.842 1.00 0.00 C ATOM 539 N ASP 72 31.932 66.529 25.286 1.00 0.00 N ATOM 540 CA ASP 72 32.124 67.564 26.286 1.00 0.00 C ATOM 541 C ASP 72 32.048 68.910 25.653 1.00 0.00 C ATOM 542 O ASP 72 33.019 69.644 25.495 1.00 0.00 O ATOM 543 CB ASP 72 33.487 67.350 27.033 1.00 0.00 C ATOM 544 CG ASP 72 33.706 68.242 28.248 1.00 0.00 C ATOM 545 OD1 ASP 72 32.705 68.709 28.822 1.00 0.00 O ATOM 546 OD2 ASP 72 34.902 68.476 28.565 1.00 0.00 O ATOM 547 N CYS 73 30.877 69.084 25.079 1.00 0.00 N ATOM 548 CA CYS 73 30.743 70.210 24.258 1.00 0.00 C ATOM 549 C CYS 73 30.190 71.327 25.085 1.00 0.00 C ATOM 550 O CYS 73 29.083 71.245 25.629 1.00 0.00 O ATOM 551 CB CYS 73 29.791 69.987 23.115 1.00 0.00 C ATOM 552 SG CYS 73 29.862 71.475 22.090 1.00 0.00 S ATOM 553 N ARG 74 30.948 72.395 24.996 1.00 0.00 N ATOM 554 CA ARG 74 30.443 73.710 25.111 1.00 0.00 C ATOM 555 C ARG 74 31.050 74.457 23.973 1.00 0.00 C ATOM 556 O ARG 74 32.281 74.475 23.818 1.00 0.00 O ATOM 557 CB ARG 74 30.880 74.265 26.448 1.00 0.00 C ATOM 558 CG ARG 74 30.345 73.377 27.545 1.00 0.00 C ATOM 559 CD ARG 74 30.789 73.891 28.848 1.00 0.00 C ATOM 560 NE ARG 74 32.247 73.808 29.087 1.00 0.00 N ATOM 561 CZ ARG 74 32.922 72.707 29.492 1.00 0.00 C ATOM 562 NH1 ARG 74 34.248 72.784 29.623 1.00 0.00 H ATOM 563 NH2 ARG 74 32.308 71.569 29.744 1.00 0.00 H ATOM 564 N CYS 75 30.193 75.055 23.183 1.00 0.00 N ATOM 565 CA CYS 75 30.644 75.937 22.162 1.00 0.00 C ATOM 566 C CYS 75 30.231 77.298 22.530 1.00 0.00 C ATOM 567 O CYS 75 29.081 77.671 22.319 1.00 0.00 O ATOM 568 CB CYS 75 30.139 75.552 20.799 1.00 0.00 C ATOM 569 SG CYS 75 31.068 74.097 20.237 1.00 0.00 S ATOM 570 N ASP 76 31.207 78.033 23.059 1.00 0.00 N ATOM 571 CA ASP 76 30.870 79.372 23.375 1.00 0.00 C ATOM 572 C ASP 76 30.707 80.202 22.164 1.00 0.00 C ATOM 573 O ASP 76 31.515 80.111 21.261 1.00 0.00 O ATOM 574 CB ASP 76 31.719 80.091 24.330 1.00 0.00 C ATOM 575 CG ASP 76 31.298 81.497 24.652 1.00 0.00 C ATOM 576 OD1 ASP 76 30.136 81.548 25.048 1.00 0.00 O ATOM 577 OD2 ASP 76 32.089 82.445 24.444 1.00 0.00 O ATOM 578 N ASN 77 29.697 81.031 22.168 1.00 0.00 N ATOM 579 CA ASN 77 29.642 82.081 21.227 1.00 0.00 C ATOM 580 C ASN 77 29.455 83.403 21.956 1.00 0.00 C ATOM 581 O ASN 77 28.428 83.704 22.560 1.00 0.00 O ATOM 582 CB ASN 77 28.481 81.763 20.268 1.00 0.00 C ATOM 583 CG ASN 77 28.360 82.724 19.082 1.00 0.00 C ATOM 584 OD1 ASN 77 28.223 83.926 19.223 1.00 0.00 O ATOM 585 ND2 ASN 77 28.437 82.205 17.861 1.00 0.00 N ATOM 586 N LEU 78 30.412 84.296 21.718 1.00 0.00 N ATOM 587 CA LEU 78 30.515 85.577 22.392 1.00 0.00 C ATOM 588 C LEU 78 29.525 86.633 21.939 1.00 0.00 C ATOM 589 O LEU 78 29.706 87.816 22.242 1.00 0.00 O ATOM 590 CB LEU 78 31.907 86.168 22.052 1.00 0.00 C ATOM 591 CG LEU 78 33.112 85.413 22.622 1.00 0.00 C ATOM 592 CD1 LEU 78 34.402 86.037 22.075 1.00 0.00 C ATOM 593 CD2 LEU 78 33.105 85.453 24.144 1.00 0.00 C ATOM 594 N CYS 79 28.535 86.246 21.139 1.00 0.00 N ATOM 595 CA CYS 79 27.519 87.155 20.723 1.00 0.00 C ATOM 596 C CYS 79 26.747 87.707 21.877 1.00 0.00 C ATOM 597 O CYS 79 26.131 86.996 22.671 1.00 0.00 O ATOM 598 CB CYS 79 26.505 86.505 19.748 1.00 0.00 C ATOM 599 SG CYS 79 25.335 87.765 19.094 1.00 0.00 S ATOM 600 N LYS 80 26.788 89.028 21.896 1.00 0.00 N ATOM 601 CA LYS 80 26.367 89.717 23.037 1.00 0.00 C ATOM 602 C LYS 80 25.048 90.295 22.809 1.00 0.00 C ATOM 603 O LYS 80 24.915 91.435 22.370 1.00 0.00 O ATOM 604 CB LYS 80 27.327 90.916 23.293 1.00 0.00 C ATOM 605 CG LYS 80 28.792 90.598 23.554 1.00 0.00 C ATOM 606 CD LYS 80 29.549 91.826 24.027 1.00 0.00 C ATOM 607 CE LYS 80 30.964 91.432 24.436 1.00 0.00 C ATOM 608 NZ LYS 80 31.737 92.625 24.817 1.00 0.00 N ATOM 609 N SER 81 24.090 89.463 23.160 1.00 0.00 N ATOM 610 CA SER 81 22.820 90.013 23.110 1.00 0.00 C ATOM 611 C SER 81 21.950 89.820 24.229 1.00 0.00 C ATOM 612 O SER 81 21.434 88.724 24.495 1.00 0.00 O ATOM 613 CB SER 81 21.997 89.450 21.907 1.00 0.00 C ATOM 614 OG SER 81 20.729 90.110 21.762 1.00 0.00 O ATOM 615 N TYR 82 21.775 90.964 24.854 1.00 0.00 N ATOM 616 CA TYR 82 20.849 90.983 25.877 1.00 0.00 C ATOM 617 C TYR 82 20.026 92.175 25.635 1.00 0.00 C ATOM 618 O TYR 82 20.329 93.269 26.090 1.00 0.00 O ATOM 619 CB TYR 82 21.331 90.925 27.288 1.00 0.00 C ATOM 620 CG TYR 82 22.009 89.616 27.331 1.00 0.00 C ATOM 621 CD1 TYR 82 23.235 89.492 26.656 1.00 0.00 C ATOM 622 CD2 TYR 82 21.572 88.624 28.194 1.00 0.00 C ATOM 623 CE1 TYR 82 23.959 88.334 26.654 1.00 0.00 C ATOM 624 CE2 TYR 82 22.359 87.490 28.265 1.00 0.00 C ATOM 625 CZ TYR 82 23.551 87.370 27.535 1.00 0.00 C ATOM 626 OH TYR 82 24.586 86.679 27.959 1.00 0.00 H ATOM 627 N SER 83 18.885 91.869 25.032 1.00 0.00 N ATOM 628 CA SER 83 17.762 92.635 25.417 1.00 0.00 C ATOM 629 C SER 83 17.266 92.411 26.821 1.00 0.00 C ATOM 630 O SER 83 16.394 93.131 27.265 1.00 0.00 O ATOM 631 CB SER 83 16.608 92.416 24.403 1.00 0.00 C ATOM 632 OG SER 83 15.982 91.146 24.494 1.00 0.00 O ATOM 633 N SER 84 17.781 91.368 27.462 1.00 0.00 N ATOM 634 CA SER 84 17.183 90.826 28.649 1.00 0.00 C ATOM 635 C SER 84 17.409 91.224 29.880 1.00 0.00 C ATOM 636 O SER 84 16.838 90.643 30.808 1.00 0.00 O ATOM 637 CB SER 84 17.726 89.334 28.761 1.00 0.00 C ATOM 638 OG SER 84 17.448 88.378 27.757 1.00 0.00 O ATOM 639 N CYS 85 18.268 92.201 29.871 1.00 0.00 N ATOM 640 CA CYS 85 18.535 92.897 31.195 1.00 0.00 C ATOM 641 C CYS 85 17.474 95.018 31.843 1.00 0.00 C ATOM 642 O CYS 85 18.234 94.027 31.122 1.00 0.00 O ATOM 643 CB CYS 85 19.979 92.335 31.249 1.00 0.00 C ATOM 644 SG CYS 85 20.126 90.495 30.972 1.00 0.00 S ATOM 645 N CYS 86 16.111 95.413 31.946 1.00 0.00 N ATOM 646 CA CYS 86 16.240 94.945 33.196 1.00 0.00 C ATOM 647 C CYS 86 16.821 96.332 33.884 1.00 0.00 C ATOM 648 O CYS 86 17.940 96.700 33.686 1.00 0.00 O ATOM 649 CB CYS 86 15.485 94.213 34.364 1.00 0.00 C ATOM 650 SG CYS 86 14.782 92.560 34.289 1.00 0.00 S ATOM 651 N HIS 87 16.146 97.401 33.951 1.00 0.00 N ATOM 652 CA HIS 87 14.834 97.235 34.097 1.00 0.00 C ATOM 653 C HIS 87 14.272 98.636 33.792 1.00 0.00 C ATOM 654 O HIS 87 13.945 99.386 34.710 1.00 0.00 O ATOM 655 CB HIS 87 14.584 96.955 35.633 1.00 0.00 C ATOM 656 CG HIS 87 13.186 96.493 35.958 1.00 0.00 C ATOM 657 ND1 HIS 87 12.569 95.419 35.303 1.00 0.00 N ATOM 658 CD2 HIS 87 12.318 96.950 36.919 1.00 0.00 C ATOM 659 CE1 HIS 87 11.383 95.274 35.868 1.00 0.00 C ATOM 660 NE2 HIS 87 11.183 96.172 36.834 1.00 0.00 N ATOM 661 N ASP 88 14.223 99.096 32.552 1.00 0.00 N ATOM 662 CA ASP 88 14.256 98.409 31.252 1.00 0.00 C ATOM 663 C ASP 88 15.575 98.325 30.531 1.00 0.00 C ATOM 664 O ASP 88 15.529 97.847 29.396 1.00 0.00 O ATOM 665 CB ASP 88 13.278 99.170 30.308 1.00 0.00 C ATOM 666 CG ASP 88 13.604 100.643 30.105 1.00 0.00 C ATOM 667 OD1 ASP 88 14.584 101.118 30.739 1.00 0.00 O ATOM 668 OD2 ASP 88 12.810 101.290 29.409 1.00 0.00 O ATOM 669 N PHE 89 16.683 98.763 31.139 1.00 0.00 N ATOM 670 CA PHE 89 17.984 98.867 30.481 1.00 0.00 C ATOM 671 C PHE 89 18.202 100.113 29.710 1.00 0.00 C ATOM 672 O PHE 89 19.357 100.431 29.404 1.00 0.00 O ATOM 673 CB PHE 89 18.204 97.453 29.427 1.00 0.00 C ATOM 674 CG PHE 89 18.233 95.762 29.731 1.00 0.00 C ATOM 675 CD1 PHE 89 16.568 94.374 29.673 1.00 0.00 C ATOM 676 CD2 PHE 89 19.598 95.689 31.183 1.00 0.00 C ATOM 677 CE1 PHE 89 16.214 93.013 31.472 1.00 0.00 C ATOM 678 CE2 PHE 89 19.426 94.510 32.818 1.00 0.00 C ATOM 679 CZ PHE 89 17.766 93.189 33.215 1.00 0.00 C ATOM 680 N ASP 90 17.110 100.827 29.447 1.00 0.00 N ATOM 681 CA ASP 90 17.237 102.163 28.994 1.00 0.00 C ATOM 682 C ASP 90 17.634 103.105 30.105 1.00 0.00 C ATOM 683 O ASP 90 18.556 103.910 29.944 1.00 0.00 O ATOM 684 CB ASP 90 15.946 102.782 28.374 1.00 0.00 C ATOM 685 CG ASP 90 15.507 102.230 27.023 1.00 0.00 C ATOM 686 OD1 ASP 90 16.318 101.498 26.391 1.00 0.00 O ATOM 687 OD2 ASP 90 14.438 102.656 26.536 1.00 0.00 O ATOM 688 N GLU 91 17.037 102.860 31.272 1.00 0.00 N ATOM 689 CA GLU 91 17.700 103.107 32.531 1.00 0.00 C ATOM 690 C GLU 91 18.731 102.029 32.596 1.00 0.00 C ATOM 691 O GLU 91 19.690 102.120 31.851 1.00 0.00 O ATOM 692 CB GLU 91 16.650 103.128 33.667 1.00 0.00 C ATOM 693 CG GLU 91 17.163 103.769 34.975 1.00 0.00 C ATOM 694 CD GLU 91 16.121 103.905 36.075 1.00 0.00 C ATOM 695 OE1 GLU 91 14.957 103.507 35.863 1.00 0.00 O ATOM 696 OE2 GLU 91 16.514 104.420 37.147 1.00 0.00 O ATOM 697 N LEU 92 18.588 101.023 33.455 1.00 0.00 N ATOM 698 CA LEU 92 19.731 100.293 33.928 1.00 0.00 C ATOM 699 C LEU 92 19.345 99.161 34.745 1.00 0.00 C ATOM 700 O LEU 92 18.575 99.348 35.685 1.00 0.00 O ATOM 701 CB LEU 92 20.697 101.235 34.747 1.00 0.00 C ATOM 702 CG LEU 92 21.445 102.330 33.948 1.00 0.00 C ATOM 703 CD1 LEU 92 22.325 103.244 34.740 1.00 0.00 C ATOM 704 CD2 LEU 92 22.223 101.670 32.844 1.00 0.00 C ATOM 705 N CYS 93 20.036 98.034 34.445 1.00 0.00 N ATOM 706 CA CYS 93 19.957 96.841 35.281 1.00 0.00 C ATOM 707 C CYS 93 20.463 97.406 36.598 1.00 0.00 C ATOM 708 O CYS 93 19.709 97.639 37.526 1.00 0.00 O ATOM 709 CB CYS 93 20.481 95.572 34.902 1.00 0.00 C ATOM 710 SG CYS 93 20.301 93.729 35.331 1.00 0.00 S ATOM 711 N LEU 94 21.728 97.713 36.675 1.00 0.00 N ATOM 712 CA LEU 94 22.248 97.351 37.921 1.00 0.00 C ATOM 713 C LEU 94 23.009 98.529 38.462 1.00 0.00 C ATOM 714 O LEU 94 23.767 99.241 37.799 1.00 0.00 O ATOM 715 CB LEU 94 23.099 96.160 37.732 1.00 0.00 C ATOM 716 CG LEU 94 23.756 95.791 39.063 1.00 0.00 C ATOM 717 CD1 LEU 94 22.971 95.385 40.141 1.00 0.00 C ATOM 718 CD2 LEU 94 24.785 94.861 39.014 1.00 0.00 C ATOM 719 N LYS 95 22.919 98.543 39.772 1.00 0.00 N ATOM 720 CA LYS 95 23.820 99.151 40.652 1.00 0.00 C ATOM 721 C LYS 95 25.278 99.064 40.543 1.00 0.00 C ATOM 722 O LYS 95 25.985 100.065 40.604 1.00 0.00 O ATOM 723 CB LYS 95 23.328 99.018 42.104 1.00 0.00 C ATOM 724 CG LYS 95 21.960 99.693 42.323 1.00 0.00 C ATOM 725 CD LYS 95 21.503 99.580 43.784 1.00 0.00 C ATOM 726 CE LYS 95 20.149 100.265 44.004 1.00 0.00 C ATOM 727 NZ LYS 95 19.696 100.109 45.400 1.00 0.00 N TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 80.46 32.1 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 84.75 28.6 56 100.0 56 ARMSMC BURIED . . . . . . . . 68.34 40.9 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 92.46 33.3 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 92.21 34.3 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 91.11 32.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 95.44 36.4 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 72.97 52.2 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 54.33 58.8 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 82.15 38.9 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 14.20 100.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 70.74 44.4 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 74.96 37.5 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 61.76 57.1 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 95.75 0.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 73.64 40.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 73.64 40.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 64.26 50.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 102.96 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 13.58 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 13.58 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.3396 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 13.58 29 100.0 29 CRMSCA BURIED . . . . . . . . 13.59 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 13.79 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 13.84 142 100.0 142 CRMSMC BURIED . . . . . . . . 13.68 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 15.98 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 15.42 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 16.72 103 100.0 103 CRMSSC BURIED . . . . . . . . 13.91 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 14.78 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 15.15 219 100.0 219 CRMSALL BURIED . . . . . . . . 13.77 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 13.088 1.000 0.500 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 13.114 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 13.019 1.000 0.500 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 13.264 1.000 0.500 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 13.313 1.000 0.500 142 100.0 142 ERRMC BURIED . . . . . . . . 13.139 1.000 0.500 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 15.342 1.000 0.500 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 14.824 1.000 0.500 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 16.161 1.000 0.500 103 100.0 103 ERRSC BURIED . . . . . . . . 13.233 1.000 0.500 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 14.155 1.000 0.500 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 14.529 1.000 0.500 219 100.0 219 ERRALL BURIED . . . . . . . . 13.180 1.000 0.500 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 0 10 40 40 DISTCA CA (P) 0.00 0.00 0.00 0.00 25.00 40 DISTCA CA (RMS) 0.00 0.00 0.00 0.00 8.40 DISTCA ALL (N) 0 0 0 0 52 303 303 DISTALL ALL (P) 0.00 0.00 0.00 0.00 17.16 303 DISTALL ALL (RMS) 0.00 0.00 0.00 0.00 8.35 DISTALL END of the results output