####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 45 ( 345), selected 45 , name T0543TS399_1-D2 # Molecule2: number of CA atoms 45 ( 345), selected 45 , name T0543-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS399_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 45 96 - 140 3.35 3.35 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 42 99 - 140 1.95 3.62 LCS_AVERAGE: 87.75 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 26 114 - 139 0.94 3.64 LCS_AVERAGE: 42.17 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 45 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT T 96 T 96 3 4 45 3 3 3 4 6 11 17 24 30 38 40 41 42 43 44 44 45 45 45 45 LCS_GDT A 97 A 97 3 4 45 3 3 3 4 4 7 8 10 15 20 23 34 41 42 44 44 45 45 45 45 LCS_GDT R 98 R 98 3 5 45 3 3 4 5 5 5 6 11 14 15 17 27 39 40 44 44 45 45 45 45 LCS_GDT G 99 G 99 3 42 45 3 3 10 14 28 36 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT W 100 W 100 12 42 45 15 28 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT E 101 E 101 12 42 45 16 28 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT C 102 C 102 12 42 45 16 28 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT T 103 T 103 12 42 45 8 28 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT K 104 K 104 12 42 45 8 24 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT D 105 D 105 12 42 45 6 22 32 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT R 106 R 106 12 42 45 16 28 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT C 107 C 107 12 42 45 10 28 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT G 108 G 108 12 42 45 16 28 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT E 109 E 109 12 42 45 16 28 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT V 110 V 110 12 42 45 8 28 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT R 111 R 111 12 42 45 4 5 7 21 33 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT N 112 N 112 12 42 45 5 19 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT E 113 E 113 7 42 45 3 6 13 18 27 33 38 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT E 114 E 114 26 42 45 4 13 32 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT N 115 N 115 26 42 45 5 19 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT A 116 A 116 26 42 45 9 27 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT C 117 C 117 26 42 45 16 28 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT H 118 H 118 26 42 45 16 28 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT C 119 C 119 26 42 45 5 28 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT S 120 S 120 26 42 45 16 28 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT E 121 E 121 26 42 45 16 28 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT D 122 D 122 26 42 45 16 28 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT C 123 C 123 26 42 45 16 28 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT L 124 L 124 26 42 45 5 25 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT S 125 S 125 26 42 45 12 26 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT R 126 R 126 26 42 45 7 26 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT G 127 G 127 26 42 45 6 28 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT D 128 D 128 26 42 45 12 28 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT C 129 C 129 26 42 45 12 28 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT C 130 C 130 26 42 45 16 28 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT T 131 T 131 26 42 45 14 28 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT N 132 N 132 26 42 45 16 28 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT Y 133 Y 133 26 42 45 16 28 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT Q 134 Q 134 26 42 45 16 28 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT V 135 V 135 26 42 45 16 28 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT V 136 V 136 26 42 45 16 28 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT C 137 C 137 26 42 45 16 28 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT K 138 K 138 26 42 45 12 28 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT G 139 G 139 26 42 45 4 26 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 LCS_GDT E 140 E 140 3 42 45 3 3 4 6 11 19 30 38 39 40 41 42 42 43 44 44 45 45 45 45 LCS_AVERAGE LCS_A: 76.64 ( 42.17 87.75 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 16 28 34 37 38 39 39 40 41 41 41 42 42 43 44 44 45 45 45 45 GDT PERCENT_AT 35.56 62.22 75.56 82.22 84.44 86.67 86.67 88.89 91.11 91.11 91.11 93.33 93.33 95.56 97.78 97.78 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.33 0.62 0.79 0.98 1.07 1.21 1.21 1.44 1.68 1.68 1.68 1.95 1.95 2.48 3.23 3.23 3.35 3.35 3.35 3.35 GDT RMS_ALL_AT 3.96 3.85 3.78 3.75 3.75 3.75 3.75 3.80 3.68 3.68 3.68 3.62 3.62 3.46 3.36 3.36 3.35 3.35 3.35 3.35 # Checking swapping # possible swapping detected: D 105 D 105 # possible swapping detected: E 109 E 109 # possible swapping detected: E 140 E 140 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA T 96 T 96 11.649 0 0.619 0.593 12.049 0.000 0.000 LGA A 97 A 97 13.552 0 0.409 0.484 15.668 0.000 0.000 LGA R 98 R 98 12.716 0 0.635 1.131 22.862 0.119 0.043 LGA G 99 G 99 6.000 0 0.651 0.651 8.550 26.667 26.667 LGA W 100 W 100 0.590 0 0.637 1.125 4.603 86.905 64.626 LGA E 101 E 101 0.667 0 0.109 0.162 1.790 86.071 84.550 LGA C 102 C 102 0.796 0 0.050 0.657 1.891 88.214 84.524 LGA T 103 T 103 1.194 0 0.037 0.162 2.055 81.429 76.599 LGA K 104 K 104 1.290 0 0.057 1.131 5.272 77.143 67.249 LGA D 105 D 105 2.004 0 0.139 0.980 5.470 68.810 55.833 LGA R 106 R 106 0.694 0 0.156 1.085 4.641 90.476 74.675 LGA C 107 C 107 1.369 0 0.036 0.756 3.748 81.429 73.651 LGA G 108 G 108 0.892 0 0.183 0.183 1.101 90.595 90.595 LGA E 109 E 109 1.150 0 0.063 0.861 3.481 81.429 70.053 LGA V 110 V 110 1.092 0 0.629 0.905 3.416 71.429 67.755 LGA R 111 R 111 3.292 0 0.086 1.332 15.115 55.714 23.550 LGA N 112 N 112 1.526 0 0.032 1.330 6.301 70.952 53.631 LGA E 113 E 113 4.873 0 0.202 0.955 12.670 40.357 19.365 LGA E 114 E 114 2.059 0 0.548 0.776 7.604 63.095 42.963 LGA N 115 N 115 1.452 0 0.062 0.371 1.799 81.548 79.345 LGA A 116 A 116 1.179 0 0.043 0.055 1.695 85.952 83.333 LGA C 117 C 117 0.498 0 0.030 0.149 1.373 90.595 89.048 LGA H 118 H 118 0.826 0 0.142 1.327 5.842 88.214 63.619 LGA C 119 C 119 0.808 0 0.108 0.211 1.557 90.476 86.032 LGA S 120 S 120 0.395 0 0.036 0.654 2.695 95.238 89.683 LGA E 121 E 121 0.987 0 0.122 0.910 2.892 85.952 77.937 LGA D 122 D 122 0.495 0 0.184 1.185 3.964 90.595 80.238 LGA C 123 C 123 0.603 0 0.090 0.105 1.371 90.595 92.143 LGA L 124 L 124 1.550 0 0.067 0.132 3.170 75.238 67.202 LGA S 125 S 125 1.706 0 0.224 0.704 3.591 71.071 68.175 LGA R 126 R 126 1.633 0 0.146 1.031 2.298 72.976 77.965 LGA G 127 G 127 1.002 0 0.099 0.099 1.002 88.214 88.214 LGA D 128 D 128 1.065 0 0.147 0.215 3.195 81.429 72.262 LGA C 129 C 129 1.093 0 0.061 0.217 1.162 85.952 84.444 LGA C 130 C 130 0.462 0 0.046 0.110 0.976 95.238 93.651 LGA T 131 T 131 1.092 0 0.155 1.115 3.065 88.214 78.367 LGA N 132 N 132 0.425 0 0.236 1.129 4.769 90.595 75.119 LGA Y 133 Y 133 0.487 0 0.078 0.394 1.440 97.619 90.595 LGA Q 134 Q 134 0.737 0 0.077 0.336 2.762 90.476 79.048 LGA V 135 V 135 0.834 0 0.057 0.061 1.139 90.476 89.184 LGA V 136 V 136 0.367 0 0.094 0.097 0.794 95.238 95.918 LGA C 137 C 137 0.545 0 0.180 0.748 3.353 88.214 82.222 LGA K 138 K 138 1.061 0 0.391 1.113 10.871 77.619 47.407 LGA G 139 G 139 2.124 0 0.697 0.697 2.827 67.024 67.024 LGA E 140 E 140 7.053 0 0.190 1.066 13.375 10.476 5.132 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 45 180 180 100.00 345 345 100.00 45 SUMMARY(RMSD_GDC): 3.351 3.222 4.832 73.913 66.214 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 45 45 4.0 40 1.44 82.778 85.886 2.602 LGA_LOCAL RMSD: 1.437 Number of atoms: 40 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 3.799 Number of assigned atoms: 45 Std_ASGN_ATOMS RMSD: 3.351 Standard rmsd on all 45 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.210707 * X + 0.973821 * Y + -0.085295 * Z + 25.046772 Y_new = 0.825428 * X + -0.223985 * Y + -0.518169 * Z + 83.234581 Z_new = -0.523709 * X + 0.038777 * Y + -0.851014 * Z + 31.976988 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.320864 0.551199 3.096059 [DEG: 75.6799 31.5814 177.3911 ] ZXZ: -0.163146 2.588710 -1.496889 [DEG: -9.3476 148.3221 -85.7654 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS399_1-D2 REMARK 2: T0543-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS399_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 45 45 4.0 40 1.44 85.886 3.35 REMARK ---------------------------------------------------------- MOLECULE T0543TS399_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT N/A ATOM 728 N THR 96 13.560 73.752 15.157 1.00 0.00 N ATOM 729 CA THR 96 12.311 74.038 15.835 1.00 0.00 C ATOM 730 C THR 96 11.587 75.214 15.202 1.00 0.00 C ATOM 731 O THR 96 12.062 76.274 14.975 1.00 0.00 O ATOM 732 CB THR 96 12.540 74.385 17.317 1.00 0.00 C ATOM 733 OG1 THR 96 13.195 73.291 17.972 1.00 0.00 O ATOM 734 CG2 THR 96 11.214 74.652 18.013 1.00 0.00 C ATOM 735 N ALA 97 10.310 75.043 14.870 1.00 0.00 N ATOM 736 CA ALA 97 9.567 76.129 14.262 1.00 0.00 C ATOM 737 C ALA 97 8.983 77.064 15.309 1.00 0.00 C ATOM 738 O ALA 97 9.564 77.942 15.849 1.00 0.00 O ATOM 739 CB ALA 97 8.417 75.584 13.429 1.00 0.00 C ATOM 740 N ARG 98 7.711 76.883 15.653 1.00 0.00 N ATOM 741 CA ARG 98 7.099 77.743 16.647 1.00 0.00 C ATOM 742 C ARG 98 8.069 78.806 17.141 1.00 0.00 C ATOM 743 O ARG 98 9.273 78.765 17.068 1.00 0.00 O ATOM 744 CB ARG 98 6.645 76.925 17.857 1.00 0.00 C ATOM 745 CG ARG 98 7.784 76.292 18.641 1.00 0.00 C ATOM 746 CD ARG 98 7.260 75.452 19.795 1.00 0.00 C ATOM 747 NE ARG 98 8.343 74.841 20.563 1.00 0.00 N ATOM 748 CZ ARG 98 8.159 74.052 21.616 1.00 0.00 C ATOM 749 NH1 ARG 98 9.203 73.543 22.254 1.00 0.00 H ATOM 750 NH2 ARG 98 6.930 73.774 22.030 1.00 0.00 H ATOM 751 N GLY 99 7.522 79.876 17.701 1.00 0.00 N ATOM 752 CA GLY 99 8.342 80.951 18.290 1.00 0.00 C ATOM 753 C GLY 99 8.900 81.954 17.278 1.00 0.00 C ATOM 754 O GLY 99 9.666 82.816 17.515 1.00 0.00 O ATOM 755 N TRP 100 8.497 81.862 16.015 1.00 0.00 N ATOM 756 CA TRP 100 9.112 82.808 15.098 1.00 0.00 C ATOM 757 C TRP 100 8.100 83.255 14.083 1.00 0.00 C ATOM 758 O TRP 100 7.151 82.614 13.740 1.00 0.00 O ATOM 759 CB TRP 100 10.291 82.160 14.369 1.00 0.00 C ATOM 760 CG TRP 100 11.423 81.785 15.276 1.00 0.00 C ATOM 761 CD1 TRP 100 12.549 82.514 15.525 1.00 0.00 C ATOM 762 CD2 TRP 100 11.538 80.587 16.054 1.00 0.00 C ATOM 763 NE1 TRP 100 13.360 81.847 16.411 1.00 0.00 N ATOM 764 CE2 TRP 100 12.761 80.660 16.751 1.00 0.00 C ATOM 765 CE3 TRP 100 10.729 79.461 16.231 1.00 0.00 C ATOM 766 CZ2 TRP 100 13.193 79.650 17.609 1.00 0.00 C ATOM 767 CZ3 TRP 100 11.161 78.462 17.082 1.00 0.00 C ATOM 768 CH2 TRP 100 12.380 78.560 17.762 1.00 0.00 H ATOM 769 N GLU 101 8.294 84.468 13.530 1.00 0.00 N ATOM 770 CA GLU 101 7.386 84.955 12.535 1.00 0.00 C ATOM 771 C GLU 101 8.194 85.663 11.497 1.00 0.00 C ATOM 772 O GLU 101 9.316 86.039 11.651 1.00 0.00 O ATOM 773 CB GLU 101 6.376 85.921 13.159 1.00 0.00 C ATOM 774 CG GLU 101 5.474 85.286 14.204 1.00 0.00 C ATOM 775 CD GLU 101 4.499 86.276 14.810 1.00 0.00 C ATOM 776 OE1 GLU 101 4.534 87.461 14.419 1.00 0.00 O ATOM 777 OE2 GLU 101 3.698 85.866 15.677 1.00 0.00 O ATOM 778 N CYS 102 7.593 85.882 10.313 1.00 0.00 N ATOM 779 CA CYS 102 8.295 86.514 9.235 1.00 0.00 C ATOM 780 C CYS 102 7.453 87.664 8.762 1.00 0.00 C ATOM 781 O CYS 102 6.300 87.768 8.972 1.00 0.00 O ATOM 782 CB CYS 102 8.520 85.525 8.090 1.00 0.00 C ATOM 783 SG CYS 102 9.590 86.142 6.770 1.00 0.00 S ATOM 784 N THR 103 8.056 88.642 8.050 1.00 0.00 N ATOM 785 CA THR 103 7.245 89.725 7.570 1.00 0.00 C ATOM 786 C THR 103 7.359 89.750 6.079 1.00 0.00 C ATOM 787 O THR 103 8.202 89.180 5.451 1.00 0.00 O ATOM 788 CB THR 103 7.713 91.076 8.142 1.00 0.00 C ATOM 789 OG1 THR 103 9.052 91.345 7.707 1.00 0.00 O ATOM 790 CG2 THR 103 7.685 91.049 9.662 1.00 0.00 C ATOM 791 N LYS 104 6.434 90.471 5.418 1.00 0.00 N ATOM 792 CA LYS 104 6.374 90.462 3.985 1.00 0.00 C ATOM 793 C LYS 104 7.688 90.907 3.429 1.00 0.00 C ATOM 794 O LYS 104 8.236 90.389 2.523 1.00 0.00 O ATOM 795 CB LYS 104 5.279 91.408 3.489 1.00 0.00 C ATOM 796 CG LYS 104 3.866 90.924 3.772 1.00 0.00 C ATOM 797 CD LYS 104 2.831 91.907 3.252 1.00 0.00 C ATOM 798 CE LYS 104 1.418 91.436 3.556 1.00 0.00 C ATOM 799 NZ LYS 104 0.394 92.405 3.082 1.00 0.00 N ATOM 800 N ASP 105 8.276 91.967 4.006 1.00 0.00 N ATOM 801 CA ASP 105 9.522 92.476 3.511 1.00 0.00 C ATOM 802 C ASP 105 10.593 91.449 3.710 1.00 0.00 C ATOM 803 O ASP 105 11.465 91.228 2.938 1.00 0.00 O ATOM 804 CB ASP 105 9.913 93.754 4.255 1.00 0.00 C ATOM 805 CG ASP 105 9.059 94.943 3.860 1.00 0.00 C ATOM 806 OD1 ASP 105 8.337 94.844 2.845 1.00 0.00 O ATOM 807 OD2 ASP 105 9.112 95.973 4.565 1.00 0.00 O ATOM 808 N ARG 106 10.552 90.735 4.847 1.00 0.00 N ATOM 809 CA ARG 106 11.603 89.817 5.176 1.00 0.00 C ATOM 810 C ARG 106 11.698 88.792 4.092 1.00 0.00 C ATOM 811 O ARG 106 12.710 88.306 3.720 1.00 0.00 O ATOM 812 CB ARG 106 11.311 89.123 6.508 1.00 0.00 C ATOM 813 CG ARG 106 11.438 90.029 7.721 1.00 0.00 C ATOM 814 CD ARG 106 11.063 89.297 8.999 1.00 0.00 C ATOM 815 NE ARG 106 11.154 90.162 10.173 1.00 0.00 N ATOM 816 CZ ARG 106 10.813 89.791 11.402 1.00 0.00 C ATOM 817 NH1 ARG 106 10.929 90.646 12.409 1.00 0.00 H ATOM 818 NH2 ARG 106 10.355 88.566 11.623 1.00 0.00 H ATOM 819 N CYS 107 10.549 88.404 3.512 1.00 0.00 N ATOM 820 CA CYS 107 10.535 87.372 2.515 1.00 0.00 C ATOM 821 C CYS 107 11.485 87.745 1.419 1.00 0.00 C ATOM 822 O CYS 107 11.523 88.819 0.885 1.00 0.00 O ATOM 823 CB CYS 107 9.130 87.210 1.933 1.00 0.00 C ATOM 824 SG CYS 107 8.991 85.927 0.666 1.00 0.00 S ATOM 825 N GLY 108 12.351 86.785 1.020 1.00 0.00 N ATOM 826 CA GLY 108 13.302 87.017 -0.034 1.00 0.00 C ATOM 827 C GLY 108 14.456 87.836 0.471 1.00 0.00 C ATOM 828 O GLY 108 14.981 88.687 -0.148 1.00 0.00 O ATOM 829 N GLU 109 14.920 87.579 1.714 1.00 0.00 N ATOM 830 CA GLU 109 16.002 88.355 2.269 1.00 0.00 C ATOM 831 C GLU 109 17.282 87.565 2.292 1.00 0.00 C ATOM 832 O GLU 109 17.377 86.366 2.531 1.00 0.00 O ATOM 833 CB GLU 109 15.678 88.775 3.704 1.00 0.00 C ATOM 834 CG GLU 109 16.772 89.593 4.373 1.00 0.00 C ATOM 835 CD GLU 109 16.404 90.015 5.782 1.00 0.00 C ATOM 836 OE1 GLU 109 15.296 89.664 6.238 1.00 0.00 O ATOM 837 OE2 GLU 109 17.224 90.698 6.431 1.00 0.00 O ATOM 838 N VAL 110 18.394 88.278 2.019 1.00 0.00 N ATOM 839 CA VAL 110 19.748 87.809 1.963 1.00 0.00 C ATOM 840 C VAL 110 20.430 87.661 3.299 1.00 0.00 C ATOM 841 O VAL 110 21.233 86.872 3.510 1.00 0.00 O ATOM 842 CB VAL 110 20.642 88.764 1.151 1.00 0.00 C ATOM 843 CG1 VAL 110 22.095 88.317 1.214 1.00 0.00 C ATOM 844 CG2 VAL 110 20.210 88.787 -0.308 1.00 0.00 C ATOM 845 N ARG 111 20.102 88.486 4.320 1.00 0.00 N ATOM 846 CA ARG 111 20.934 88.376 5.494 1.00 0.00 C ATOM 847 C ARG 111 20.129 88.418 6.755 1.00 0.00 C ATOM 848 O ARG 111 19.134 89.070 6.908 1.00 0.00 O ATOM 849 CB ARG 111 21.940 89.527 5.548 1.00 0.00 C ATOM 850 CG ARG 111 22.960 89.513 4.420 1.00 0.00 C ATOM 851 CD ARG 111 23.954 90.655 4.561 1.00 0.00 C ATOM 852 NE ARG 111 24.967 90.630 3.508 1.00 0.00 N ATOM 853 CZ ARG 111 25.972 91.496 3.417 1.00 0.00 C ATOM 854 NH1 ARG 111 26.846 91.396 2.426 1.00 0.00 H ATOM 855 NH2 ARG 111 26.099 92.460 4.319 1.00 0.00 H ATOM 856 N ASN 112 20.576 87.656 7.778 1.00 0.00 N ATOM 857 CA ASN 112 19.906 87.675 9.048 1.00 0.00 C ATOM 858 C ASN 112 20.949 87.663 10.125 1.00 0.00 C ATOM 859 O ASN 112 21.800 86.842 10.220 1.00 0.00 O ATOM 860 CB ASN 112 19.001 86.450 9.193 1.00 0.00 C ATOM 861 CG ASN 112 17.944 86.374 8.110 1.00 0.00 C ATOM 862 OD1 ASN 112 16.938 87.082 8.160 1.00 0.00 O ATOM 863 ND2 ASN 112 18.169 85.512 7.125 1.00 0.00 N ATOM 864 N GLU 113 20.906 88.657 11.042 1.00 0.00 N ATOM 865 CA GLU 113 21.851 88.663 12.124 1.00 0.00 C ATOM 866 C GLU 113 21.477 87.664 13.174 1.00 0.00 C ATOM 867 O GLU 113 22.173 86.763 13.530 1.00 0.00 O ATOM 868 CB GLU 113 21.904 90.044 12.781 1.00 0.00 C ATOM 869 CG GLU 113 22.472 91.135 11.887 1.00 0.00 C ATOM 870 CD GLU 113 22.457 92.498 12.549 1.00 0.00 C ATOM 871 OE1 GLU 113 22.076 92.577 13.737 1.00 0.00 O ATOM 872 OE2 GLU 113 22.827 93.487 11.883 1.00 0.00 O ATOM 873 N GLU 114 20.266 87.807 13.744 1.00 0.00 N ATOM 874 CA GLU 114 19.865 86.894 14.771 1.00 0.00 C ATOM 875 C GLU 114 18.403 86.665 14.592 1.00 0.00 C ATOM 876 O GLU 114 17.561 87.452 14.870 1.00 0.00 O ATOM 877 CB GLU 114 20.146 87.486 16.153 1.00 0.00 C ATOM 878 CG GLU 114 19.772 86.571 17.308 1.00 0.00 C ATOM 879 CD GLU 114 20.060 87.193 18.661 1.00 0.00 C ATOM 880 OE1 GLU 114 20.587 88.325 18.695 1.00 0.00 O ATOM 881 OE2 GLU 114 19.758 86.548 19.687 1.00 0.00 O ATOM 882 N ASN 115 18.033 85.479 14.079 1.00 0.00 N ATOM 883 CA ASN 115 16.637 85.220 13.930 1.00 0.00 C ATOM 884 C ASN 115 16.450 83.748 14.067 1.00 0.00 C ATOM 885 O ASN 115 17.161 82.931 13.580 1.00 0.00 O ATOM 886 CB ASN 115 16.149 85.689 12.558 1.00 0.00 C ATOM 887 CG ASN 115 16.275 87.189 12.377 1.00 0.00 C ATOM 888 OD1 ASN 115 15.481 87.958 12.920 1.00 0.00 O ATOM 889 ND2 ASN 115 17.275 87.608 11.610 1.00 0.00 N ATOM 890 N ALA 116 15.399 83.337 14.797 1.00 0.00 N ATOM 891 CA ALA 116 15.163 81.940 15.005 1.00 0.00 C ATOM 892 C ALA 116 14.881 81.296 13.684 1.00 0.00 C ATOM 893 O ALA 116 15.334 80.262 13.340 1.00 0.00 O ATOM 894 CB ALA 116 13.973 81.735 15.930 1.00 0.00 C ATOM 895 N CYS 117 14.055 81.945 12.840 1.00 0.00 N ATOM 896 CA CYS 117 13.685 81.333 11.591 1.00 0.00 C ATOM 897 C CYS 117 14.311 82.100 10.472 1.00 0.00 C ATOM 898 O CYS 117 14.946 83.103 10.612 1.00 0.00 O ATOM 899 CB CYS 117 12.165 81.343 11.420 1.00 0.00 C ATOM 900 SG CYS 117 11.456 82.982 11.134 1.00 0.00 S ATOM 901 N HIS 118 14.135 81.606 9.225 1.00 0.00 N ATOM 902 CA HIS 118 14.701 82.249 8.072 1.00 0.00 C ATOM 903 C HIS 118 13.611 82.590 7.092 1.00 0.00 C ATOM 904 O HIS 118 12.795 81.803 6.621 1.00 0.00 O ATOM 905 CB HIS 118 15.709 81.326 7.385 1.00 0.00 C ATOM 906 CG HIS 118 16.340 81.921 6.165 1.00 0.00 C ATOM 907 ND1 HIS 118 17.225 82.976 6.223 1.00 0.00 N ATOM 908 CD2 HIS 118 16.275 81.666 4.733 1.00 0.00 C ATOM 909 CE1 HIS 118 17.618 83.287 4.974 1.00 0.00 C ATOM 910 NE2 HIS 118 17.052 82.505 4.076 1.00 0.00 N ATOM 911 N CYS 119 13.564 83.881 6.731 1.00 0.00 N ATOM 912 CA CYS 119 12.711 84.563 5.796 1.00 0.00 C ATOM 913 C CYS 119 13.175 84.433 4.367 1.00 0.00 C ATOM 914 O CYS 119 12.676 84.978 3.467 1.00 0.00 O ATOM 915 CB CYS 119 12.653 86.058 6.115 1.00 0.00 C ATOM 916 SG CYS 119 11.874 86.454 7.698 1.00 0.00 S ATOM 917 N SER 120 14.233 83.641 4.099 1.00 0.00 N ATOM 918 CA SER 120 14.772 83.579 2.759 1.00 0.00 C ATOM 919 C SER 120 14.325 82.340 2.036 1.00 0.00 C ATOM 920 O SER 120 13.842 81.367 2.563 1.00 0.00 O ATOM 921 CB SER 120 16.302 83.571 2.796 1.00 0.00 C ATOM 922 OG SER 120 16.843 83.445 1.493 1.00 0.00 O ATOM 923 N GLU 121 14.487 82.346 0.695 1.00 0.00 N ATOM 924 CA GLU 121 14.060 81.274 -0.162 1.00 0.00 C ATOM 925 C GLU 121 14.797 80.017 0.186 1.00 0.00 C ATOM 926 O GLU 121 14.338 78.935 0.118 1.00 0.00 O ATOM 927 CB GLU 121 14.338 81.616 -1.627 1.00 0.00 C ATOM 928 CG GLU 121 13.441 82.705 -2.191 1.00 0.00 C ATOM 929 CD GLU 121 13.807 83.084 -3.613 1.00 0.00 C ATOM 930 OE1 GLU 121 14.805 82.543 -4.133 1.00 0.00 O ATOM 931 OE2 GLU 121 13.094 83.920 -4.207 1.00 0.00 O ATOM 932 N ASP 122 16.066 80.139 0.603 1.00 0.00 N ATOM 933 CA ASP 122 16.868 78.983 0.876 1.00 0.00 C ATOM 934 C ASP 122 16.170 78.161 1.911 1.00 0.00 C ATOM 935 O ASP 122 16.248 76.985 1.995 1.00 0.00 O ATOM 936 CB ASP 122 18.246 79.398 1.396 1.00 0.00 C ATOM 937 CG ASP 122 19.128 79.978 0.309 1.00 0.00 C ATOM 938 OD1 ASP 122 18.769 79.848 -0.881 1.00 0.00 O ATOM 939 OD2 ASP 122 20.179 80.564 0.645 1.00 0.00 O ATOM 940 N CYS 123 15.402 78.816 2.800 1.00 0.00 N ATOM 941 CA CYS 123 14.740 78.107 3.856 1.00 0.00 C ATOM 942 C CYS 123 13.875 77.075 3.222 1.00 0.00 C ATOM 943 O CYS 123 13.653 76.033 3.691 1.00 0.00 O ATOM 944 CB CYS 123 13.887 79.063 4.692 1.00 0.00 C ATOM 945 SG CYS 123 12.545 79.861 3.780 1.00 0.00 S ATOM 946 N LEU 124 13.315 77.362 2.038 1.00 0.00 N ATOM 947 CA LEU 124 12.455 76.386 1.439 1.00 0.00 C ATOM 948 C LEU 124 13.233 75.130 1.173 1.00 0.00 C ATOM 949 O LEU 124 12.842 74.051 1.415 1.00 0.00 O ATOM 950 CB LEU 124 11.890 76.909 0.117 1.00 0.00 C ATOM 951 CG LEU 124 10.879 78.053 0.218 1.00 0.00 C ATOM 952 CD1 LEU 124 10.540 78.594 -1.162 1.00 0.00 C ATOM 953 CD2 LEU 124 9.591 77.576 0.872 1.00 0.00 C ATOM 954 N SER 125 14.457 75.248 0.622 1.00 0.00 N ATOM 955 CA SER 125 15.230 74.076 0.318 1.00 0.00 C ATOM 956 C SER 125 15.588 73.351 1.583 1.00 0.00 C ATOM 957 O SER 125 15.326 72.210 1.806 1.00 0.00 O ATOM 958 CB SER 125 16.522 74.460 -0.407 1.00 0.00 C ATOM 959 OG SER 125 16.246 75.000 -1.688 1.00 0.00 O ATOM 960 N ARG 126 16.251 74.052 2.524 1.00 0.00 N ATOM 961 CA ARG 126 16.729 73.447 3.740 1.00 0.00 C ATOM 962 C ARG 126 15.634 72.993 4.659 1.00 0.00 C ATOM 963 O ARG 126 15.673 72.009 5.276 1.00 0.00 O ATOM 964 CB ARG 126 17.585 74.438 4.532 1.00 0.00 C ATOM 965 CG ARG 126 18.938 74.730 3.902 1.00 0.00 C ATOM 966 CD ARG 126 19.701 75.777 4.696 1.00 0.00 C ATOM 967 NE ARG 126 21.003 76.073 4.102 1.00 0.00 N ATOM 968 CZ ARG 126 21.834 77.006 4.551 1.00 0.00 C ATOM 969 NH1 ARG 126 22.998 77.205 3.947 1.00 0.00 H ATOM 970 NH2 ARG 126 21.502 77.739 5.606 1.00 0.00 H ATOM 971 N GLY 127 14.536 73.766 4.783 1.00 0.00 N ATOM 972 CA GLY 127 13.482 73.402 5.696 1.00 0.00 C ATOM 973 C GLY 127 13.487 74.286 6.921 1.00 0.00 C ATOM 974 O GLY 127 12.960 74.019 7.962 1.00 0.00 O ATOM 975 N ASP 128 14.138 75.463 6.819 1.00 0.00 N ATOM 976 CA ASP 128 14.302 76.523 7.788 1.00 0.00 C ATOM 977 C ASP 128 13.133 77.485 7.886 1.00 0.00 C ATOM 978 O ASP 128 13.038 78.293 8.693 1.00 0.00 O ATOM 979 CB ASP 128 15.526 77.375 7.448 1.00 0.00 C ATOM 980 CG ASP 128 15.383 78.096 6.122 1.00 0.00 C ATOM 981 OD1 ASP 128 14.354 77.893 5.443 1.00 0.00 O ATOM 982 OD2 ASP 128 16.299 78.864 5.761 1.00 0.00 O ATOM 983 N CYS 129 12.128 77.416 6.992 1.00 0.00 N ATOM 984 CA CYS 129 11.098 78.427 6.877 1.00 0.00 C ATOM 985 C CYS 129 10.277 78.623 8.133 1.00 0.00 C ATOM 986 O CYS 129 9.889 77.729 8.871 1.00 0.00 O ATOM 987 CB CYS 129 10.111 78.064 5.766 1.00 0.00 C ATOM 988 SG CYS 129 10.812 78.111 4.100 1.00 0.00 S ATOM 989 N CYS 130 9.965 79.908 8.431 1.00 0.00 N ATOM 990 CA CYS 130 9.245 80.323 9.606 1.00 0.00 C ATOM 991 C CYS 130 7.906 79.654 9.581 1.00 0.00 C ATOM 992 O CYS 130 7.403 79.187 8.605 1.00 0.00 O ATOM 993 CB CYS 130 9.067 81.843 9.616 1.00 0.00 C ATOM 994 SG CYS 130 10.612 82.776 9.727 1.00 0.00 S ATOM 995 N THR 131 7.238 79.585 10.751 1.00 0.00 N ATOM 996 CA THR 131 5.991 78.885 10.850 1.00 0.00 C ATOM 997 C THR 131 5.018 79.485 9.887 1.00 0.00 C ATOM 998 O THR 131 4.349 78.860 9.160 1.00 0.00 O ATOM 999 CB THR 131 5.402 78.979 12.270 1.00 0.00 C ATOM 1000 OG1 THR 131 6.300 78.368 13.204 1.00 0.00 O ATOM 1001 CG2 THR 131 4.061 78.265 12.338 1.00 0.00 C ATOM 1002 N ASN 132 4.907 80.828 9.855 1.00 0.00 N ATOM 1003 CA ASN 132 3.970 81.413 8.943 1.00 0.00 C ATOM 1004 C ASN 132 4.730 82.066 7.832 1.00 0.00 C ATOM 1005 O ASN 132 4.552 83.181 7.456 1.00 0.00 O ATOM 1006 CB ASN 132 3.112 82.461 9.654 1.00 0.00 C ATOM 1007 CG ASN 132 2.113 81.842 10.613 1.00 0.00 C ATOM 1008 OD1 ASN 132 1.756 80.671 10.481 1.00 0.00 O ATOM 1009 ND2 ASN 132 1.658 82.629 11.581 1.00 0.00 N ATOM 1010 N TYR 133 5.678 81.326 7.229 1.00 0.00 N ATOM 1011 CA TYR 133 6.453 81.823 6.129 1.00 0.00 C ATOM 1012 C TYR 133 5.577 81.934 4.922 1.00 0.00 C ATOM 1013 O TYR 133 5.518 82.894 4.200 1.00 0.00 O ATOM 1014 CB TYR 133 7.615 80.877 5.821 1.00 0.00 C ATOM 1015 CG TYR 133 8.471 81.317 4.655 1.00 0.00 C ATOM 1016 CD1 TYR 133 9.421 82.317 4.808 1.00 0.00 C ATOM 1017 CD2 TYR 133 8.326 80.730 3.404 1.00 0.00 C ATOM 1018 CE1 TYR 133 10.208 82.727 3.748 1.00 0.00 C ATOM 1019 CE2 TYR 133 9.104 81.125 2.334 1.00 0.00 C ATOM 1020 CZ TYR 133 10.051 82.133 2.516 1.00 0.00 C ATOM 1021 OH TYR 133 10.833 82.538 1.458 1.00 0.00 H ATOM 1022 N GLN 134 4.809 80.863 4.646 1.00 0.00 N ATOM 1023 CA GLN 134 3.939 80.790 3.511 1.00 0.00 C ATOM 1024 C GLN 134 2.788 81.721 3.687 1.00 0.00 C ATOM 1025 O GLN 134 2.309 82.356 2.822 1.00 0.00 O ATOM 1026 CB GLN 134 3.397 79.368 3.343 1.00 0.00 C ATOM 1027 CG GLN 134 4.441 78.354 2.902 1.00 0.00 C ATOM 1028 CD GLN 134 3.896 76.941 2.853 1.00 0.00 C ATOM 1029 OE1 GLN 134 2.757 76.691 3.246 1.00 0.00 O ATOM 1030 NE2 GLN 134 4.710 76.010 2.369 1.00 0.00 N ATOM 1031 N VAL 135 2.271 81.835 4.917 1.00 0.00 N ATOM 1032 CA VAL 135 1.130 82.675 5.095 1.00 0.00 C ATOM 1033 C VAL 135 1.507 84.068 4.710 1.00 0.00 C ATOM 1034 O VAL 135 0.902 84.733 3.945 1.00 0.00 O ATOM 1035 CB VAL 135 0.647 82.671 6.557 1.00 0.00 C ATOM 1036 CG1 VAL 135 -0.437 83.717 6.764 1.00 0.00 C ATOM 1037 CG2 VAL 135 0.077 81.309 6.926 1.00 0.00 C ATOM 1038 N VAL 136 2.610 84.593 5.280 1.00 0.00 N ATOM 1039 CA VAL 136 3.027 85.927 4.952 1.00 0.00 C ATOM 1040 C VAL 136 3.595 86.022 3.568 1.00 0.00 C ATOM 1041 O VAL 136 3.218 86.782 2.734 1.00 0.00 O ATOM 1042 CB VAL 136 4.115 86.432 5.918 1.00 0.00 C ATOM 1043 CG1 VAL 136 4.673 87.765 5.442 1.00 0.00 C ATOM 1044 CG2 VAL 136 3.541 86.622 7.314 1.00 0.00 C ATOM 1045 N CYS 137 4.603 85.182 3.262 1.00 0.00 N ATOM 1046 CA CYS 137 5.279 85.267 2.000 1.00 0.00 C ATOM 1047 C CYS 137 4.383 84.850 0.884 1.00 0.00 C ATOM 1048 O CYS 137 4.190 85.499 -0.076 1.00 0.00 O ATOM 1049 CB CYS 137 6.510 84.358 1.988 1.00 0.00 C ATOM 1050 SG CYS 137 7.486 84.443 0.470 1.00 0.00 S ATOM 1051 N LYS 138 3.761 83.655 0.990 1.00 0.00 N ATOM 1052 CA LYS 138 2.931 83.255 -0.104 1.00 0.00 C ATOM 1053 C LYS 138 1.849 84.275 -0.229 1.00 0.00 C ATOM 1054 O LYS 138 1.674 84.922 -1.177 1.00 0.00 O ATOM 1055 CB LYS 138 2.327 81.874 0.159 1.00 0.00 C ATOM 1056 CG LYS 138 1.429 81.367 -0.957 1.00 0.00 C ATOM 1057 CD LYS 138 0.894 79.978 -0.648 1.00 0.00 C ATOM 1058 CE LYS 138 -0.018 79.478 -1.758 1.00 0.00 C ATOM 1059 NZ LYS 138 -0.574 78.131 -1.454 1.00 0.00 N ATOM 1060 N GLY 139 1.028 84.461 0.815 1.00 0.00 N ATOM 1061 CA GLY 139 0.024 85.493 0.846 1.00 0.00 C ATOM 1062 C GLY 139 -0.765 85.508 -0.426 1.00 0.00 C ATOM 1063 O GLY 139 -0.933 84.551 -1.154 1.00 0.00 O ATOM 1064 N GLU 140 -1.318 86.695 -0.751 1.00 0.00 N ATOM 1065 CA GLU 140 -2.060 86.879 -1.961 1.00 0.00 C ATOM 1066 C GLU 140 -1.358 87.937 -2.746 1.00 0.00 C ATOM 1067 O GLU 140 -1.110 89.036 -2.343 1.00 0.00 O ATOM 1068 CB GLU 140 -3.493 87.314 -1.649 1.00 0.00 C ATOM 1069 CG GLU 140 -4.328 86.250 -0.956 1.00 0.00 C ATOM 1070 CD GLU 140 -5.765 86.685 -0.745 1.00 0.00 C ATOM 1071 OE1 GLU 140 -6.119 87.800 -1.179 1.00 0.00 O ATOM 1072 OE2 GLU 140 -6.538 85.908 -0.143 1.00 0.00 O TER 7140 ILE 887 END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 345 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 53.35 67.0 88 100.0 88 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 59.65 64.5 62 100.0 62 ARMSMC BURIED . . . . . . . . 33.93 73.1 26 100.0 26 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 83.08 51.3 39 100.0 39 ARMSSC1 RELIABLE SIDE CHAINS . 84.36 50.0 36 100.0 36 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 82.49 50.0 26 100.0 26 ARMSSC1 BURIED . . . . . . . . 84.25 53.8 13 100.0 13 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 62.38 65.2 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 69.02 66.7 18 100.0 18 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 73.11 62.5 16 100.0 16 ARMSSC2 BURIED . . . . . . . . 23.82 71.4 7 100.0 7 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 62.54 61.5 13 100.0 13 ARMSSC3 RELIABLE SIDE CHAINS . 64.34 66.7 12 100.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 45.96 70.0 10 100.0 10 ARMSSC3 BURIED . . . . . . . . 99.55 33.3 3 100.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 70.18 50.0 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 70.18 50.0 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 76.46 50.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 55.54 50.0 2 100.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 3.35 (Number of atoms: 45) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 3.35 45 100.0 45 CRMSCA CRN = ALL/NP . . . . . 0.0745 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 3.80 32 100.0 32 CRMSCA BURIED . . . . . . . . 1.83 13 100.0 13 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 3.42 221 100.0 221 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 3.88 156 100.0 156 CRMSMC BURIED . . . . . . . . 1.90 65 100.0 65 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 6.18 165 100.0 165 CRMSSC RELIABLE SIDE CHAINS . 6.43 145 100.0 145 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 6.61 112 100.0 112 CRMSSC BURIED . . . . . . . . 5.16 53 100.0 53 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 4.87 345 100.0 345 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 5.24 240 100.0 240 CRMSALL BURIED . . . . . . . . 3.88 105 100.0 105 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.491 1.000 0.500 45 100.0 45 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 2.839 1.000 0.500 32 100.0 32 ERRCA BURIED . . . . . . . . 1.636 1.000 0.500 13 100.0 13 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.548 1.000 0.500 221 100.0 221 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 2.920 1.000 0.500 156 100.0 156 ERRMC BURIED . . . . . . . . 1.656 1.000 0.500 65 100.0 65 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.547 1.000 0.500 165 100.0 165 ERRSC RELIABLE SIDE CHAINS . 4.681 1.000 0.500 145 100.0 145 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 4.934 1.000 0.500 112 100.0 112 ERRSC BURIED . . . . . . . . 3.730 1.000 0.500 53 100.0 53 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.451 1.000 0.500 345 100.0 345 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 3.788 1.000 0.500 240 100.0 240 ERRALL BURIED . . . . . . . . 2.680 1.000 0.500 105 100.0 105 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 6 26 35 40 44 45 45 DISTCA CA (P) 13.33 57.78 77.78 88.89 97.78 45 DISTCA CA (RMS) 0.68 1.40 1.64 1.97 2.99 DISTCA ALL (N) 38 161 225 281 323 345 345 DISTALL ALL (P) 11.01 46.67 65.22 81.45 93.62 345 DISTALL ALL (RMS) 0.72 1.41 1.76 2.36 3.41 DISTALL END of the results output