####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS386_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS386_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 56 - 95 2.05 2.05 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 39 56 - 94 1.96 2.06 LCS_AVERAGE: 96.75 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 73 - 93 0.97 2.15 LCS_AVERAGE: 38.50 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 9 39 40 7 22 28 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 57 S 57 9 39 40 12 24 28 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 58 C 58 9 39 40 12 24 28 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 59 K 59 9 39 40 7 24 28 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT G 60 G 60 9 39 40 10 24 28 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT R 61 R 61 9 39 40 12 24 28 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 62 C 62 9 39 40 12 24 28 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT F 63 F 63 9 39 40 12 24 28 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 64 E 64 9 39 40 3 20 28 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 65 L 65 9 39 40 3 7 20 28 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT Q 66 Q 66 6 39 40 3 7 10 14 25 32 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 67 E 67 4 39 40 3 4 5 12 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT V 68 V 68 4 39 40 3 4 4 5 6 12 24 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT G 69 G 69 4 39 40 3 3 5 13 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT P 70 P 70 6 39 40 1 4 12 18 30 33 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT P 71 P 71 18 39 40 2 14 26 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 72 D 72 18 39 40 2 5 14 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 73 C 73 21 39 40 5 24 28 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT R 74 R 74 21 39 40 9 24 28 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 75 C 75 21 39 40 9 24 28 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 76 D 76 21 39 40 4 14 27 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT N 77 N 77 21 39 40 4 8 20 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 78 L 78 21 39 40 12 24 28 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 79 C 79 21 39 40 12 24 28 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 80 K 80 21 39 40 12 24 28 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 81 S 81 21 39 40 12 24 28 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT Y 82 Y 82 21 39 40 6 24 28 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 83 S 83 21 39 40 8 24 28 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 84 S 84 21 39 40 12 24 28 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 85 C 85 21 39 40 12 24 28 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 86 C 86 21 39 40 12 24 28 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT H 87 H 87 21 39 40 12 24 28 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 88 D 88 21 39 40 6 24 28 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT F 89 F 89 21 39 40 11 24 28 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 90 D 90 21 39 40 4 24 28 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 91 E 91 21 39 40 4 24 28 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 92 L 92 21 39 40 4 24 28 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 93 C 93 21 39 40 4 24 28 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 94 L 94 17 39 40 3 7 16 27 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 95 K 95 8 27 40 3 5 11 17 26 33 37 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_AVERAGE LCS_A: 78.42 ( 38.50 96.75 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 24 28 30 32 36 37 38 39 40 40 40 40 40 40 40 40 40 40 40 GDT PERCENT_AT 30.00 60.00 70.00 75.00 80.00 90.00 92.50 95.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.28 0.63 0.76 0.92 1.17 1.46 1.60 1.72 1.87 2.05 2.05 2.05 2.05 2.05 2.05 2.05 2.05 2.05 2.05 2.05 GDT RMS_ALL_AT 2.19 2.16 2.15 2.15 2.12 2.08 2.09 2.09 2.06 2.05 2.05 2.05 2.05 2.05 2.05 2.05 2.05 2.05 2.05 2.05 # Checking swapping # possible swapping detected: E 67 E 67 # possible swapping detected: D 76 D 76 # possible swapping detected: Y 82 Y 82 # possible swapping detected: D 88 D 88 # possible swapping detected: E 91 E 91 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 1.215 0 0.353 0.353 1.997 81.548 81.548 LGA S 57 S 57 0.598 0 0.059 0.582 2.489 92.857 87.778 LGA C 58 C 58 0.577 0 0.166 0.896 2.800 90.476 84.921 LGA K 59 K 59 0.994 0 0.580 0.774 2.918 79.881 74.286 LGA G 60 G 60 1.920 0 0.286 0.286 2.025 72.976 72.976 LGA R 61 R 61 0.906 0 0.412 0.786 2.592 77.381 76.190 LGA C 62 C 62 0.952 0 0.170 0.868 2.610 85.952 81.905 LGA F 63 F 63 0.799 0 0.110 1.372 6.967 88.214 58.009 LGA E 64 E 64 1.359 0 0.121 0.747 3.828 75.119 70.635 LGA L 65 L 65 3.057 0 0.671 1.374 6.466 57.381 49.762 LGA Q 66 Q 66 4.980 0 0.064 1.207 12.521 34.405 16.614 LGA E 67 E 67 2.866 0 0.250 0.996 7.448 55.357 39.365 LGA V 68 V 68 6.076 0 0.101 1.066 10.633 26.548 15.374 LGA G 69 G 69 3.155 0 0.582 0.582 4.124 58.333 58.333 LGA P 70 P 70 4.054 0 0.122 0.197 7.047 42.262 32.789 LGA P 71 P 71 2.106 0 0.278 0.392 3.054 69.048 64.014 LGA D 72 D 72 2.293 3 0.572 0.580 3.895 59.405 35.952 LGA C 73 C 73 0.849 0 0.191 0.183 1.228 90.476 87.460 LGA R 74 R 74 0.742 0 0.072 0.898 3.485 90.476 75.844 LGA C 75 C 75 0.884 0 0.356 0.719 3.531 92.857 82.698 LGA D 76 D 76 2.004 0 0.084 0.916 4.164 66.786 57.798 LGA N 77 N 77 2.997 0 0.127 0.395 5.476 62.976 47.381 LGA L 78 L 78 0.683 0 0.249 1.307 4.875 88.214 70.536 LGA C 79 C 79 0.286 0 0.058 0.168 0.595 97.619 96.825 LGA K 80 K 80 0.473 0 0.047 0.857 4.003 92.857 76.296 LGA S 81 S 81 0.817 0 0.047 0.043 0.849 90.476 90.476 LGA Y 82 Y 82 1.079 0 0.142 0.143 2.255 85.952 77.302 LGA S 83 S 83 0.732 0 0.259 0.245 1.354 88.214 85.952 LGA S 84 S 84 0.374 0 0.325 0.319 1.441 90.595 90.556 LGA C 85 C 85 0.459 0 0.049 0.135 0.864 95.238 93.651 LGA C 86 C 86 0.514 0 0.051 0.123 1.102 92.857 90.556 LGA H 87 H 87 0.622 0 0.102 1.290 6.551 92.857 62.429 LGA D 88 D 88 0.829 0 0.187 0.978 3.434 90.476 76.012 LGA F 89 F 89 1.015 0 0.067 0.339 1.844 83.690 82.338 LGA D 90 D 90 1.093 0 0.047 1.358 4.654 81.429 68.214 LGA E 91 E 91 1.103 0 0.137 0.819 2.680 81.429 74.074 LGA L 92 L 92 0.934 0 0.080 1.444 4.976 90.476 71.012 LGA C 93 C 93 0.760 0 0.220 0.835 3.040 88.214 82.222 LGA L 94 L 94 2.624 0 0.510 1.165 4.097 57.262 56.607 LGA K 95 K 95 4.022 0 0.244 0.655 13.263 48.690 24.815 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 2.053 1.944 3.249 77.182 68.038 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 38 1.72 82.500 89.297 2.087 LGA_LOCAL RMSD: 1.721 Number of atoms: 38 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.087 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 2.053 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.517353 * X + 0.797920 * Y + -0.309306 * Z + -55.598492 Y_new = 0.218085 * X + 0.226572 * Y + 0.949265 * Z + -63.986549 Z_new = 0.827517 * X + -0.558560 * Y + -0.056797 * Z + -22.446304 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.398936 -0.974671 -1.672132 [DEG: 22.8574 -55.8445 -95.8061 ] ZXZ: -2.826604 1.627624 2.164535 [DEG: -161.9525 93.2560 124.0187 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS386_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS386_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 38 1.72 89.297 2.05 REMARK ---------------------------------------------------------- MOLECULE T0543TS386_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT N/A ATOM 422 N GLY 56 35.248 72.242 19.971 1.00 0.00 N ATOM 423 CA GLY 56 33.879 71.870 19.731 1.00 0.00 C ATOM 424 C GLY 56 33.069 73.060 19.359 1.00 0.00 C ATOM 425 O GLY 56 32.496 73.700 20.239 1.00 0.00 O ATOM 426 N SER 57 33.091 73.480 18.085 1.00 0.00 N ATOM 427 CA SER 57 32.299 74.639 17.800 1.00 0.00 C ATOM 428 CB SER 57 32.943 75.625 16.812 1.00 0.00 C ATOM 429 OG SER 57 32.934 75.080 15.502 1.00 0.00 O ATOM 430 C SER 57 31.013 74.172 17.193 1.00 0.00 C ATOM 431 O SER 57 31.005 73.300 16.325 1.00 0.00 O ATOM 432 N CYS 58 29.890 74.746 17.674 1.00 0.00 N ATOM 433 CA CYS 58 28.557 74.411 17.242 1.00 0.00 C ATOM 434 CB CYS 58 27.392 74.864 18.180 1.00 0.00 C ATOM 435 SG CYS 58 25.737 74.760 17.384 1.00 0.00 S ATOM 436 C CYS 58 28.261 74.895 15.856 1.00 0.00 C ATOM 437 O CYS 58 27.415 74.297 15.200 1.00 0.00 O ATOM 438 N LYS 59 28.988 75.917 15.342 1.00 0.00 N ATOM 439 CA LYS 59 28.572 76.654 14.170 1.00 0.00 C ATOM 440 CB LYS 59 29.665 77.599 13.646 1.00 0.00 C ATOM 441 CG LYS 59 29.124 78.657 12.682 1.00 0.00 C ATOM 442 CD LYS 59 30.089 79.820 12.446 1.00 0.00 C ATOM 443 CE LYS 59 29.458 80.998 11.703 1.00 0.00 C ATOM 444 NZ LYS 59 29.028 80.577 10.352 1.00 0.00 N ATOM 445 C LYS 59 28.158 75.753 13.047 1.00 0.00 C ATOM 446 O LYS 59 27.073 75.932 12.495 1.00 0.00 O ATOM 447 N GLY 60 28.974 74.757 12.673 1.00 0.00 N ATOM 448 CA GLY 60 28.507 73.872 11.649 1.00 0.00 C ATOM 449 C GLY 60 27.388 73.005 12.159 1.00 0.00 C ATOM 450 O GLY 60 26.367 72.847 11.491 1.00 0.00 O ATOM 451 N ARG 61 27.517 72.426 13.372 1.00 0.00 N ATOM 452 CA ARG 61 26.502 71.462 13.678 1.00 0.00 C ATOM 453 CB ARG 61 27.062 70.040 13.853 1.00 0.00 C ATOM 454 CG ARG 61 28.108 69.894 14.958 1.00 0.00 C ATOM 455 CD ARG 61 28.922 68.603 14.827 1.00 0.00 C ATOM 456 NE ARG 61 29.847 68.520 15.990 1.00 0.00 N ATOM 457 CZ ARG 61 29.456 67.853 17.115 1.00 0.00 C ATOM 458 NH1 ARG 61 28.237 67.243 17.157 1.00 0.00 H ATOM 459 NH2 ARG 61 30.289 67.786 18.194 1.00 0.00 H ATOM 460 C ARG 61 25.689 71.805 14.872 1.00 0.00 C ATOM 461 O ARG 61 25.999 71.413 15.996 1.00 0.00 O ATOM 462 N CYS 62 24.588 72.539 14.638 1.00 0.00 N ATOM 463 CA CYS 62 23.666 72.716 15.705 1.00 0.00 C ATOM 464 CB CYS 62 22.865 74.027 15.652 1.00 0.00 C ATOM 465 SG CYS 62 21.671 74.063 14.287 1.00 0.00 S ATOM 466 C CYS 62 22.713 71.580 15.535 1.00 0.00 C ATOM 467 O CYS 62 22.588 71.018 14.446 1.00 0.00 O ATOM 468 N PHE 63 22.031 71.197 16.624 1.00 0.00 N ATOM 469 CA PHE 63 21.055 70.149 16.578 1.00 0.00 C ATOM 470 CB PHE 63 19.789 70.543 15.790 1.00 0.00 C ATOM 471 CG PHE 63 18.729 69.528 16.058 1.00 0.00 C ATOM 472 CD1 PHE 63 18.148 69.454 17.303 1.00 0.00 C ATOM 473 CD2 PHE 63 18.289 68.676 15.070 1.00 0.00 C ATOM 474 CE1 PHE 63 17.165 68.529 17.568 1.00 0.00 C ATOM 475 CE2 PHE 63 17.305 67.750 15.330 1.00 0.00 C ATOM 476 CZ PHE 63 16.743 67.673 16.581 1.00 0.00 C ATOM 477 C PHE 63 21.620 68.880 16.024 1.00 0.00 C ATOM 478 O PHE 63 20.984 68.204 15.217 1.00 0.00 O ATOM 479 N GLU 64 22.858 68.527 16.410 1.00 0.00 N ATOM 480 CA GLU 64 23.277 67.208 16.048 1.00 0.00 C ATOM 481 CB GLU 64 24.790 67.063 15.814 1.00 0.00 C ATOM 482 CG GLU 64 25.179 65.695 15.247 1.00 0.00 C ATOM 483 CD GLU 64 26.639 65.755 14.821 1.00 0.00 C ATOM 484 OE1 GLU 64 27.013 66.748 14.143 1.00 0.00 O ATOM 485 OE2 GLU 64 27.400 64.813 15.169 1.00 0.00 O ATOM 486 C GLU 64 22.899 66.427 17.258 1.00 0.00 C ATOM 487 O GLU 64 23.427 66.663 18.345 1.00 0.00 O ATOM 488 N LEU 65 21.948 65.490 17.108 1.00 0.00 N ATOM 489 CA LEU 65 21.474 64.815 18.275 1.00 0.00 C ATOM 490 CB LEU 65 20.200 63.987 18.048 1.00 0.00 C ATOM 491 CG LEU 65 19.053 64.841 17.480 1.00 0.00 C ATOM 492 CD1 LEU 65 18.726 66.041 18.382 1.00 0.00 C ATOM 493 CD2 LEU 65 19.344 65.255 16.031 1.00 0.00 C ATOM 494 C LEU 65 22.561 63.937 18.779 1.00 0.00 C ATOM 495 O LEU 65 23.319 63.342 18.013 1.00 0.00 O ATOM 496 N GLN 66 22.620 63.836 20.115 1.00 0.00 N ATOM 497 CA GLN 66 23.705 63.230 20.816 1.00 0.00 C ATOM 498 CB GLN 66 23.754 63.636 22.295 1.00 0.00 C ATOM 499 CG GLN 66 23.952 65.136 22.493 1.00 0.00 C ATOM 500 CD GLN 66 23.984 65.405 23.987 1.00 0.00 C ATOM 501 OE1 GLN 66 23.893 64.487 24.801 1.00 0.00 O ATOM 502 NE2 GLN 66 24.118 66.704 24.362 1.00 0.00 N ATOM 503 C GLN 66 23.701 61.750 20.781 1.00 0.00 C ATOM 504 O GLN 66 22.691 61.072 20.594 1.00 0.00 O ATOM 505 N GLU 67 24.933 61.245 20.937 1.00 0.00 N ATOM 506 CA GLU 67 25.271 59.876 21.096 1.00 0.00 C ATOM 507 CB GLU 67 25.904 59.248 19.844 1.00 0.00 C ATOM 508 CG GLU 67 27.153 59.981 19.351 1.00 0.00 C ATOM 509 CD GLU 67 27.666 59.253 18.116 1.00 0.00 C ATOM 510 OE1 GLU 67 27.210 58.102 17.876 1.00 0.00 O ATOM 511 OE2 GLU 67 28.518 59.836 17.396 1.00 0.00 O ATOM 512 C GLU 67 26.303 59.944 22.163 1.00 0.00 C ATOM 513 O GLU 67 26.907 60.996 22.367 1.00 0.00 O ATOM 514 N VAL 68 26.516 58.858 22.915 1.00 0.00 N ATOM 515 CA VAL 68 27.515 58.980 23.924 1.00 0.00 C ATOM 516 CB VAL 68 27.511 57.854 24.917 1.00 0.00 C ATOM 517 CG1 VAL 68 26.177 57.888 25.682 1.00 0.00 C ATOM 518 CG2 VAL 68 27.764 56.535 24.167 1.00 0.00 C ATOM 519 C VAL 68 28.827 58.987 23.223 1.00 0.00 C ATOM 520 O VAL 68 28.978 58.378 22.166 1.00 0.00 O ATOM 521 N GLY 69 29.816 59.703 23.788 1.00 0.00 N ATOM 522 CA GLY 69 31.103 59.678 23.169 1.00 0.00 C ATOM 523 C GLY 69 31.531 61.033 22.692 1.00 0.00 C ATOM 524 O GLY 69 32.739 61.200 22.574 1.00 0.00 O ATOM 525 N PRO 70 30.690 61.984 22.348 1.00 0.00 N ATOM 526 CA PRO 70 31.224 63.284 21.971 1.00 0.00 C ATOM 527 CD PRO 70 29.529 61.638 21.547 1.00 0.00 C ATOM 528 CB PRO 70 30.157 63.944 21.104 1.00 0.00 C ATOM 529 CG PRO 70 29.395 62.754 20.497 1.00 0.00 C ATOM 530 C PRO 70 31.618 64.127 23.160 1.00 0.00 C ATOM 531 O PRO 70 30.702 64.458 23.912 1.00 0.00 O ATOM 532 N PRO 71 32.867 64.480 23.411 1.00 0.00 N ATOM 533 CA PRO 71 33.173 65.333 24.534 1.00 0.00 C ATOM 534 CD PRO 71 34.000 63.639 23.068 1.00 0.00 C ATOM 535 CB PRO 71 34.489 64.814 25.110 1.00 0.00 C ATOM 536 CG PRO 71 35.176 64.158 23.904 1.00 0.00 C ATOM 537 C PRO 71 33.261 66.809 24.325 1.00 0.00 C ATOM 538 O PRO 71 32.941 67.547 25.256 1.00 0.00 O ATOM 539 N ASP 72 33.688 67.260 23.124 1.00 0.00 N ATOM 540 CA ASP 72 34.008 68.648 22.947 1.00 0.00 C ATOM 541 CB ASP 72 34.497 68.975 21.519 1.00 0.00 C ATOM 542 CG ASP 72 33.466 68.556 20.472 1.00 0.00 C ATOM 543 OD1 ASP 72 32.691 67.596 20.729 1.00 0.00 O ATOM 544 OD2 ASP 72 33.457 69.184 19.380 1.00 0.00 O ATOM 545 C ASP 72 32.796 69.421 23.271 1.00 0.00 C ATOM 546 O ASP 72 32.824 70.359 24.067 1.00 0.00 O ATOM 547 N CYS 73 31.676 69.002 22.683 1.00 0.00 N ATOM 548 CA CYS 73 30.456 69.632 23.022 1.00 0.00 C ATOM 549 CB CYS 73 30.484 71.161 22.876 1.00 0.00 C ATOM 550 SG CYS 73 30.789 71.658 21.163 1.00 0.00 S ATOM 551 C CYS 73 29.444 69.102 22.087 1.00 0.00 C ATOM 552 O CYS 73 29.763 68.588 21.016 1.00 0.00 O ATOM 553 N ARG 74 28.180 69.193 22.503 1.00 0.00 N ATOM 554 CA ARG 74 27.133 68.781 21.637 1.00 0.00 C ATOM 555 CB ARG 74 26.224 67.685 22.220 1.00 0.00 C ATOM 556 CG ARG 74 26.844 66.284 22.194 1.00 0.00 C ATOM 557 CD ARG 74 28.016 66.078 23.155 1.00 0.00 C ATOM 558 NE ARG 74 27.473 66.088 24.542 1.00 0.00 N ATOM 559 CZ ARG 74 26.885 64.973 25.068 1.00 0.00 C ATOM 560 NH1 ARG 74 26.696 63.866 24.297 1.00 0.00 H ATOM 561 NH2 ARG 74 26.467 64.959 26.366 1.00 0.00 H ATOM 562 C ARG 74 26.309 69.998 21.425 1.00 0.00 C ATOM 563 O ARG 74 26.217 70.864 22.294 1.00 0.00 O ATOM 564 N CYS 75 25.737 70.131 20.222 1.00 0.00 N ATOM 565 CA CYS 75 24.896 71.257 20.001 1.00 0.00 C ATOM 566 CB CYS 75 25.238 71.976 18.669 1.00 0.00 C ATOM 567 SG CYS 75 24.467 73.610 18.487 1.00 0.00 S ATOM 568 C CYS 75 23.522 70.671 19.958 1.00 0.00 C ATOM 569 O CYS 75 22.999 70.332 18.898 1.00 0.00 O ATOM 570 N ASP 76 22.909 70.494 21.142 1.00 0.00 N ATOM 571 CA ASP 76 21.617 69.878 21.173 1.00 0.00 C ATOM 572 CB ASP 76 21.691 68.372 21.492 1.00 0.00 C ATOM 573 CG ASP 76 20.398 67.689 21.060 1.00 0.00 C ATOM 574 OD1 ASP 76 19.465 68.401 20.603 1.00 0.00 O ATOM 575 OD2 ASP 76 20.334 66.435 21.177 1.00 0.00 O ATOM 576 C ASP 76 20.848 70.549 22.265 1.00 0.00 C ATOM 577 O ASP 76 21.426 71.214 23.120 1.00 0.00 O ATOM 578 N ASN 77 19.508 70.456 22.230 1.00 0.00 N ATOM 579 CA ASN 77 18.746 70.952 23.337 1.00 0.00 C ATOM 580 CB ASN 77 17.226 70.879 23.122 1.00 0.00 C ATOM 581 CG ASN 77 16.835 71.987 22.153 1.00 0.00 C ATOM 582 OD1 ASN 77 17.548 72.979 22.011 1.00 0.00 O ATOM 583 ND2 ASN 77 15.666 71.824 21.475 1.00 0.00 N ATOM 584 C ASN 77 19.104 70.039 24.450 1.00 0.00 C ATOM 585 O ASN 77 19.172 70.430 25.613 1.00 0.00 O ATOM 586 N LEU 78 19.366 68.778 24.071 1.00 0.00 N ATOM 587 CA LEU 78 19.723 67.734 24.970 1.00 0.00 C ATOM 588 CB LEU 78 19.996 66.406 24.243 1.00 0.00 C ATOM 589 CG LEU 78 18.761 65.825 23.526 1.00 0.00 C ATOM 590 CD1 LEU 78 19.094 64.504 22.816 1.00 0.00 C ATOM 591 CD2 LEU 78 17.568 65.697 24.488 1.00 0.00 C ATOM 592 C LEU 78 20.985 68.148 25.651 1.00 0.00 C ATOM 593 O LEU 78 21.141 67.920 26.847 1.00 0.00 O ATOM 594 N CYS 79 21.921 68.794 24.928 1.00 0.00 N ATOM 595 CA CYS 79 23.150 69.101 25.595 1.00 0.00 C ATOM 596 CB CYS 79 24.272 69.711 24.738 1.00 0.00 C ATOM 597 SG CYS 79 24.029 71.460 24.352 1.00 0.00 S ATOM 598 C CYS 79 22.877 70.043 26.708 1.00 0.00 C ATOM 599 O CYS 79 23.621 70.057 27.679 1.00 0.00 O ATOM 600 N LYS 80 21.884 70.943 26.592 1.00 0.00 N ATOM 601 CA LYS 80 21.716 71.822 27.711 1.00 0.00 C ATOM 602 CB LYS 80 20.839 73.067 27.458 1.00 0.00 C ATOM 603 CG LYS 80 19.444 72.835 26.896 1.00 0.00 C ATOM 604 CD LYS 80 18.595 74.107 26.923 1.00 0.00 C ATOM 605 CE LYS 80 19.359 75.356 26.470 1.00 0.00 C ATOM 606 NZ LYS 80 18.459 76.531 26.463 1.00 0.00 N ATOM 607 C LYS 80 21.269 71.039 28.903 1.00 0.00 C ATOM 608 O LYS 80 21.634 71.373 30.027 1.00 0.00 O ATOM 609 N SER 81 20.467 69.974 28.705 1.00 0.00 N ATOM 610 CA SER 81 20.048 69.175 29.824 1.00 0.00 C ATOM 611 CB SER 81 19.114 68.023 29.418 1.00 0.00 C ATOM 612 OG SER 81 17.905 68.537 28.881 1.00 0.00 O ATOM 613 C SER 81 21.267 68.556 30.455 1.00 0.00 C ATOM 614 O SER 81 21.425 68.581 31.674 1.00 0.00 O ATOM 615 N TYR 82 22.160 67.991 29.619 1.00 0.00 N ATOM 616 CA TYR 82 23.377 67.323 30.012 1.00 0.00 C ATOM 617 CB TYR 82 24.105 66.604 28.857 1.00 0.00 C ATOM 618 CG TYR 82 23.285 65.435 28.427 1.00 0.00 C ATOM 619 CD1 TYR 82 23.398 64.229 29.079 1.00 0.00 C ATOM 620 CD2 TYR 82 22.398 65.543 27.381 1.00 0.00 C ATOM 621 CE1 TYR 82 22.642 63.147 28.692 1.00 0.00 C ATOM 622 CE2 TYR 82 21.640 64.465 26.989 1.00 0.00 C ATOM 623 CZ TYR 82 21.762 63.264 27.644 1.00 0.00 C ATOM 624 OH TYR 82 20.984 62.157 27.244 1.00 0.00 H ATOM 625 C TYR 82 24.357 68.295 30.601 1.00 0.00 C ATOM 626 O TYR 82 25.122 67.946 31.500 1.00 0.00 O ATOM 627 N SER 83 24.325 69.554 30.126 1.00 0.00 N ATOM 628 CA SER 83 25.267 70.590 30.448 1.00 0.00 C ATOM 629 CB SER 83 25.654 70.605 31.937 1.00 0.00 C ATOM 630 OG SER 83 24.512 70.875 32.736 1.00 0.00 O ATOM 631 C SER 83 26.534 70.446 29.650 1.00 0.00 C ATOM 632 O SER 83 27.570 70.991 30.030 1.00 0.00 O ATOM 633 N SER 84 26.501 69.728 28.507 1.00 0.00 N ATOM 634 CA SER 84 27.686 69.682 27.691 1.00 0.00 C ATOM 635 CB SER 84 28.112 68.246 27.369 1.00 0.00 C ATOM 636 OG SER 84 27.029 67.576 26.747 1.00 0.00 O ATOM 637 C SER 84 27.378 70.366 26.396 1.00 0.00 C ATOM 638 O SER 84 27.215 69.740 25.350 1.00 0.00 O ATOM 639 N CYS 85 27.373 71.703 26.425 1.00 0.00 N ATOM 640 CA CYS 85 27.002 72.476 25.286 1.00 0.00 C ATOM 641 CB CYS 85 25.914 73.433 25.700 1.00 0.00 C ATOM 642 SG CYS 85 24.408 72.515 26.072 1.00 0.00 S ATOM 643 C CYS 85 28.189 73.284 24.892 1.00 0.00 C ATOM 644 O CYS 85 28.994 73.655 25.741 1.00 0.00 O ATOM 645 N CYS 86 28.315 73.585 23.586 1.00 0.00 N ATOM 646 CA CYS 86 29.436 74.330 23.091 1.00 0.00 C ATOM 647 CB CYS 86 29.477 74.398 21.555 1.00 0.00 C ATOM 648 SG CYS 86 29.184 72.812 20.710 1.00 0.00 S ATOM 649 C CYS 86 29.248 75.744 23.542 1.00 0.00 C ATOM 650 O CYS 86 28.143 76.148 23.877 1.00 0.00 O ATOM 651 N HIS 87 30.324 76.550 23.598 1.00 0.00 N ATOM 652 CA HIS 87 30.116 77.920 23.982 1.00 0.00 C ATOM 653 ND1 HIS 87 31.901 78.563 26.453 1.00 0.00 N ATOM 654 CG HIS 87 32.202 78.345 25.130 1.00 0.00 C ATOM 655 CB HIS 87 31.365 78.766 24.013 1.00 0.00 C ATOM 656 NE2 HIS 87 33.801 77.439 26.372 1.00 0.00 N ATOM 657 CD2 HIS 87 33.363 77.660 25.095 1.00 0.00 C ATOM 658 CE1 HIS 87 32.899 77.994 27.159 1.00 0.00 C ATOM 659 C HIS 87 29.291 78.599 22.968 1.00 0.00 C ATOM 660 O HIS 87 28.343 79.316 23.287 1.00 0.00 O ATOM 661 N ASP 88 29.684 78.369 21.712 1.00 0.00 N ATOM 662 CA ASP 88 29.110 78.932 20.536 1.00 0.00 C ATOM 663 CB ASP 88 29.906 78.571 19.272 1.00 0.00 C ATOM 664 CG ASP 88 31.245 79.292 19.337 1.00 0.00 C ATOM 665 OD1 ASP 88 31.251 80.489 19.730 1.00 0.00 O ATOM 666 OD2 ASP 88 32.278 78.654 19.002 1.00 0.00 O ATOM 667 C ASP 88 27.759 78.357 20.407 1.00 0.00 C ATOM 668 O ASP 88 26.923 78.855 19.654 1.00 0.00 O ATOM 669 N PHE 89 27.533 77.271 21.157 1.00 0.00 N ATOM 670 CA PHE 89 26.318 76.542 21.056 1.00 0.00 C ATOM 671 CB PHE 89 26.306 75.364 22.053 1.00 0.00 C ATOM 672 CG PHE 89 24.973 74.791 22.356 1.00 0.00 C ATOM 673 CD1 PHE 89 24.239 74.123 21.423 1.00 0.00 C ATOM 674 CD2 PHE 89 24.490 74.870 23.634 1.00 0.00 C ATOM 675 CE1 PHE 89 23.016 73.584 21.721 1.00 0.00 C ATOM 676 CE2 PHE 89 23.269 74.336 23.966 1.00 0.00 C ATOM 677 CZ PHE 89 22.530 73.704 22.995 1.00 0.00 C ATOM 678 C PHE 89 25.171 77.466 21.228 1.00 0.00 C ATOM 679 O PHE 89 24.285 77.467 20.378 1.00 0.00 O ATOM 680 N ASP 90 25.177 78.334 22.255 1.00 0.00 N ATOM 681 CA ASP 90 24.007 79.127 22.513 1.00 0.00 C ATOM 682 CB ASP 90 24.162 80.003 23.763 1.00 0.00 C ATOM 683 CG ASP 90 22.802 80.570 24.112 1.00 0.00 C ATOM 684 OD1 ASP 90 21.828 80.264 23.381 1.00 0.00 O ATOM 685 OD2 ASP 90 22.701 81.320 25.116 1.00 0.00 O ATOM 686 C ASP 90 23.642 79.979 21.348 1.00 0.00 C ATOM 687 O ASP 90 22.489 80.006 20.922 1.00 0.00 O ATOM 688 N GLU 91 24.611 80.687 20.772 1.00 0.00 N ATOM 689 CA GLU 91 24.232 81.579 19.730 1.00 0.00 C ATOM 690 CB GLU 91 25.413 82.482 19.360 1.00 0.00 C ATOM 691 CG GLU 91 26.704 81.678 19.254 1.00 0.00 C ATOM 692 CD GLU 91 27.883 82.614 19.380 1.00 0.00 C ATOM 693 OE1 GLU 91 27.861 83.497 20.283 1.00 0.00 O ATOM 694 OE2 GLU 91 28.830 82.418 18.575 1.00 0.00 O ATOM 695 C GLU 91 23.733 80.832 18.548 1.00 0.00 C ATOM 696 O GLU 91 22.749 81.238 17.939 1.00 0.00 O ATOM 697 N LEU 92 24.395 79.721 18.191 1.00 0.00 N ATOM 698 CA LEU 92 24.059 79.024 16.990 1.00 0.00 C ATOM 699 CB LEU 92 25.120 78.042 16.490 1.00 0.00 C ATOM 700 CG LEU 92 24.665 77.413 15.161 1.00 0.00 C ATOM 701 CD1 LEU 92 24.543 78.477 14.059 1.00 0.00 C ATOM 702 CD2 LEU 92 25.547 76.238 14.748 1.00 0.00 C ATOM 703 C LEU 92 22.781 78.252 17.035 1.00 0.00 C ATOM 704 O LEU 92 22.151 78.140 15.981 1.00 0.00 O ATOM 705 N CYS 93 22.393 77.701 18.216 1.00 0.00 N ATOM 706 CA CYS 93 21.361 76.686 18.290 1.00 0.00 C ATOM 707 CB CYS 93 21.960 75.382 18.814 1.00 0.00 C ATOM 708 SG CYS 93 20.764 74.032 18.958 1.00 0.00 S ATOM 709 C CYS 93 20.251 76.977 19.227 1.00 0.00 C ATOM 710 O CYS 93 19.179 77.339 18.703 1.00 0.00 O ATOM 711 N LEU 94 20.530 76.705 20.582 1.00 0.00 N ATOM 712 CA LEU 94 19.813 77.152 21.755 1.00 0.00 C ATOM 713 CB LEU 94 20.575 77.917 22.793 1.00 0.00 C ATOM 714 CG LEU 94 21.559 77.002 23.362 1.00 0.00 C ATOM 715 CD1 LEU 94 20.751 75.844 23.924 1.00 0.00 C ATOM 716 CD2 LEU 94 22.599 76.623 22.336 1.00 0.00 C ATOM 717 C LEU 94 19.285 78.295 21.142 1.00 0.00 C ATOM 718 O LEU 94 20.110 79.128 20.799 1.00 0.00 O ATOM 719 N LYS 95 17.967 78.252 20.921 1.00 0.00 N ATOM 720 CA LYS 95 17.251 79.089 20.022 1.00 0.00 C ATOM 721 CB LYS 95 15.805 79.382 20.444 1.00 0.00 C ATOM 722 CG LYS 95 14.948 78.125 20.302 1.00 0.00 C ATOM 723 CD LYS 95 13.528 78.242 20.847 1.00 0.00 C ATOM 724 CE LYS 95 12.727 76.950 20.675 1.00 0.00 C ATOM 725 NZ LYS 95 12.746 76.526 19.256 1.00 0.00 N ATOM 726 C LYS 95 17.989 80.343 19.738 1.00 0.00 C ATOM 727 O LYS 95 17.794 81.393 20.344 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 51.93 59.0 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 58.65 55.4 56 100.0 56 ARMSMC BURIED . . . . . . . . 28.38 68.2 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 87.79 47.2 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 87.21 48.6 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 83.44 52.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 96.95 36.4 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 79.61 34.8 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 64.95 41.2 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 83.24 33.3 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 64.92 40.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 67.08 66.7 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 68.43 75.0 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 75.01 57.1 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 23.60 100.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 96.87 20.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 96.87 20.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 97.23 25.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 95.42 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.05 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.05 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.0513 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 2.10 29 100.0 29 CRMSCA BURIED . . . . . . . . 1.94 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.15 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 2.20 142 100.0 142 CRMSMC BURIED . . . . . . . . 2.02 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 4.29 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 3.85 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 4.58 103 100.0 103 CRMSSC BURIED . . . . . . . . 3.44 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.27 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 3.47 219 100.0 219 CRMSALL BURIED . . . . . . . . 2.70 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.629 1.000 0.500 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 1.736 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 1.345 1.000 0.500 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.677 1.000 0.500 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 1.794 1.000 0.500 142 100.0 142 ERRMC BURIED . . . . . . . . 1.374 1.000 0.500 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.354 1.000 0.500 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 2.977 1.000 0.500 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 3.655 1.000 0.500 103 100.0 103 ERRSC BURIED . . . . . . . . 2.578 1.000 0.500 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.419 1.000 0.500 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 2.616 1.000 0.500 219 100.0 219 ERRALL BURIED . . . . . . . . 1.907 1.000 0.500 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 17 28 36 39 40 40 40 DISTCA CA (P) 42.50 70.00 90.00 97.50 100.00 40 DISTCA CA (RMS) 0.76 0.97 1.50 1.88 2.05 DISTCA ALL (N) 86 168 225 273 295 303 303 DISTALL ALL (P) 28.38 55.45 74.26 90.10 97.36 303 DISTALL ALL (RMS) 0.74 1.14 1.58 2.17 2.75 DISTALL END of the results output