####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 45 ( 345), selected 45 , name T0543TS361_1-D2 # Molecule2: number of CA atoms 45 ( 345), selected 45 , name T0543-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS361_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 45 96 - 140 2.25 2.25 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 43 97 - 139 1.91 2.27 LONGEST_CONTINUOUS_SEGMENT: 43 98 - 140 1.99 2.28 LCS_AVERAGE: 93.58 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 115 - 135 0.98 2.53 LCS_AVERAGE: 33.58 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 45 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT T 96 T 96 3 3 45 0 3 9 19 24 34 38 39 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT A 97 A 97 4 43 45 3 3 4 7 18 24 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT R 98 R 98 4 43 45 3 3 4 13 15 37 39 41 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT G 99 G 99 12 43 45 7 20 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT W 100 W 100 12 43 45 9 22 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT E 101 E 101 12 43 45 9 22 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT C 102 C 102 12 43 45 9 22 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT T 103 T 103 12 43 45 9 20 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT K 104 K 104 12 43 45 9 19 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT D 105 D 105 12 43 45 8 19 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT R 106 R 106 12 43 45 9 22 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT C 107 C 107 12 43 45 5 19 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT G 108 G 108 12 43 45 9 22 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT E 109 E 109 12 43 45 9 22 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT V 110 V 110 12 43 45 9 22 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT R 111 R 111 11 43 45 4 5 9 20 32 38 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT N 112 N 112 5 43 45 4 15 28 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT E 113 E 113 7 43 45 4 5 13 19 30 34 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT E 114 E 114 10 43 45 3 10 26 35 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT N 115 N 115 21 43 45 6 20 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT A 116 A 116 21 43 45 8 20 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT C 117 C 117 21 43 45 9 22 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT H 118 H 118 21 43 45 9 22 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT C 119 C 119 21 43 45 3 22 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT S 120 S 120 21 43 45 5 22 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT E 121 E 121 21 43 45 7 22 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT D 122 D 122 21 43 45 7 22 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT C 123 C 123 21 43 45 7 22 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT L 124 L 124 21 43 45 3 4 27 35 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT S 125 S 125 21 43 45 3 13 27 35 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT R 126 R 126 21 43 45 6 22 28 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT G 127 G 127 21 43 45 6 22 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT D 128 D 128 21 43 45 6 22 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT C 129 C 129 21 43 45 6 22 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT C 130 C 130 21 43 45 9 22 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT T 131 T 131 21 43 45 8 22 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT N 132 N 132 21 43 45 7 22 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT Y 133 Y 133 21 43 45 8 22 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT Q 134 Q 134 21 43 45 3 13 29 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT V 135 V 135 21 43 45 6 22 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT V 136 V 136 12 43 45 6 15 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT C 137 C 137 12 43 45 6 19 30 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT K 138 K 138 12 43 45 6 20 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT G 139 G 139 12 43 45 3 10 29 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT E 140 E 140 3 43 45 3 3 3 3 4 7 11 40 41 42 42 45 45 45 45 45 45 45 45 45 LCS_AVERAGE LCS_A: 75.72 ( 33.58 93.58 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 22 31 36 39 39 40 42 43 44 44 45 45 45 45 45 45 45 45 45 GDT PERCENT_AT 20.00 48.89 68.89 80.00 86.67 86.67 88.89 93.33 95.56 97.78 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.31 0.71 0.94 1.12 1.32 1.32 1.44 1.78 1.93 2.06 2.06 2.25 2.25 2.25 2.25 2.25 2.25 2.25 2.25 2.25 GDT RMS_ALL_AT 2.44 2.50 2.40 2.39 2.34 2.34 2.31 2.27 2.29 2.27 2.27 2.25 2.25 2.25 2.25 2.25 2.25 2.25 2.25 2.25 # Checking swapping # possible swapping detected: E 101 E 101 # possible swapping detected: D 105 D 105 # possible swapping detected: E 121 E 121 # possible swapping detected: D 128 D 128 # possible swapping detected: Y 133 Y 133 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA T 96 T 96 5.426 0 0.557 0.570 6.904 31.667 30.884 LGA A 97 A 97 4.765 0 0.568 0.564 6.002 29.286 27.714 LGA R 98 R 98 5.032 0 0.197 1.191 16.123 35.238 13.593 LGA G 99 G 99 0.548 0 0.215 0.215 1.385 92.976 92.976 LGA W 100 W 100 0.810 0 0.073 0.159 1.966 88.214 80.952 LGA E 101 E 101 0.784 0 0.036 0.828 3.953 88.214 70.741 LGA C 102 C 102 0.963 0 0.054 0.157 1.184 85.952 85.952 LGA T 103 T 103 1.571 0 0.056 0.197 2.581 75.000 68.435 LGA K 104 K 104 1.608 0 0.047 1.318 6.177 72.857 57.672 LGA D 105 D 105 2.071 0 0.140 0.223 2.433 68.810 66.786 LGA R 106 R 106 1.211 0 0.181 1.121 4.275 81.429 71.775 LGA C 107 C 107 1.925 0 0.040 0.066 3.111 77.143 70.556 LGA G 108 G 108 0.747 0 0.096 0.096 1.211 88.214 88.214 LGA E 109 E 109 0.934 0 0.127 0.695 4.802 85.952 70.053 LGA V 110 V 110 1.226 0 0.604 0.942 4.260 75.357 66.939 LGA R 111 R 111 3.390 0 0.074 1.458 13.281 55.714 22.511 LGA N 112 N 112 1.117 0 0.198 1.272 6.959 79.286 54.405 LGA E 113 E 113 4.530 0 0.210 0.200 9.491 42.024 21.481 LGA E 114 E 114 2.098 0 0.544 1.045 4.510 62.976 56.931 LGA N 115 N 115 0.653 0 0.041 0.676 3.675 90.476 77.202 LGA A 116 A 116 0.641 0 0.031 0.058 1.013 90.476 88.667 LGA C 117 C 117 0.729 0 0.087 0.154 0.987 90.476 90.476 LGA H 118 H 118 1.447 0 0.099 1.089 3.029 79.286 70.048 LGA C 119 C 119 1.118 0 0.265 0.261 1.473 83.690 82.937 LGA S 120 S 120 1.167 0 0.099 0.165 1.384 85.952 84.444 LGA E 121 E 121 0.960 0 0.135 1.425 5.618 85.952 67.460 LGA D 122 D 122 0.404 0 0.238 1.058 3.784 90.595 79.226 LGA C 123 C 123 0.428 0 0.077 0.141 1.663 88.571 90.794 LGA L 124 L 124 2.459 0 0.062 1.465 5.252 61.190 59.286 LGA S 125 S 125 2.672 0 0.210 0.686 4.199 55.595 54.048 LGA R 126 R 126 2.101 0 0.145 0.586 2.575 62.857 73.160 LGA G 127 G 127 1.431 0 0.179 0.179 1.725 75.000 75.000 LGA D 128 D 128 1.344 0 0.229 1.045 2.399 79.286 73.036 LGA C 129 C 129 1.251 0 0.059 0.104 1.482 81.429 81.429 LGA C 130 C 130 0.645 0 0.086 0.095 0.882 90.476 90.476 LGA T 131 T 131 0.763 0 0.141 1.087 3.176 90.476 82.109 LGA N 132 N 132 1.042 0 0.085 0.154 1.354 85.952 83.690 LGA Y 133 Y 133 0.824 0 0.102 0.517 2.432 85.952 75.278 LGA Q 134 Q 134 1.893 0 0.107 0.746 7.026 77.143 51.852 LGA V 135 V 135 1.550 0 0.041 1.216 4.597 77.143 68.231 LGA V 136 V 136 1.698 0 0.141 0.138 2.441 75.000 70.612 LGA C 137 C 137 1.949 0 0.167 0.170 3.073 77.143 70.556 LGA K 138 K 138 1.135 0 0.330 0.735 4.358 71.429 63.175 LGA G 139 G 139 2.280 0 0.345 0.345 5.239 53.929 53.929 LGA E 140 E 140 6.657 0 0.331 0.829 13.221 22.262 10.741 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 45 180 180 100.00 345 345 100.00 45 SUMMARY(RMSD_GDC): 2.249 2.199 3.775 73.868 66.365 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 45 45 4.0 42 1.78 80.556 87.557 2.238 LGA_LOCAL RMSD: 1.777 Number of atoms: 42 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.269 Number of assigned atoms: 45 Std_ASGN_ATOMS RMSD: 2.249 Standard rmsd on all 45 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.199028 * X + -0.462070 * Y + -0.864222 * Z + -1.107192 Y_new = -0.956810 * X + -0.282307 * Y + -0.069411 * Z + 96.178711 Z_new = -0.211903 * X + 0.840710 * Y + -0.498300 * Z + 7.399962 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.365709 0.213522 2.105841 [DEG: -78.2494 12.2339 120.6558 ] ZXZ: -1.490653 2.092433 -0.246909 [DEG: -85.4081 119.8876 -14.1469 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS361_1-D2 REMARK 2: T0543-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS361_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 45 45 4.0 42 1.78 87.557 2.25 REMARK ---------------------------------------------------------- MOLECULE T0543TS361_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT N/A ATOM 728 N THR 96 17.025 90.798 20.304 1.00 30.00 N ATOM 729 CA THR 96 16.149 89.797 20.847 1.00 30.00 C ATOM 730 C THR 96 15.017 89.528 19.886 1.00 30.00 C ATOM 731 O THR 96 15.244 89.288 18.700 1.00 30.00 O ATOM 732 CB THR 96 15.705 90.041 22.267 1.00 30.00 C ATOM 733 OG1 THR 96 16.856 90.214 23.081 1.00 30.00 O ATOM 734 CG2 THR 96 14.967 88.795 22.804 1.00 30.00 C ATOM 735 N ALA 97 13.769 89.542 20.389 1.00 30.00 N ATOM 736 CA ALA 97 12.542 89.267 19.700 1.00 30.00 C ATOM 737 C ALA 97 12.360 87.803 19.608 1.00 30.00 C ATOM 738 O ALA 97 11.279 87.318 19.943 1.00 30.00 O ATOM 739 CB ALA 97 12.520 89.833 18.270 1.00 30.00 C ATOM 740 N ARG 98 13.437 87.078 19.238 1.00 30.00 N ATOM 741 CA ARG 98 13.415 85.647 19.113 1.00 30.00 C ATOM 742 C ARG 98 12.149 85.253 18.420 1.00 30.00 C ATOM 743 O ARG 98 11.500 84.276 18.790 1.00 30.00 O ATOM 744 CB ARG 98 13.554 84.895 20.451 1.00 30.00 C ATOM 745 CG ARG 98 12.488 85.240 21.489 1.00 30.00 C ATOM 746 CD ARG 98 12.588 84.387 22.756 1.00 30.00 C ATOM 747 NE ARG 98 12.154 83.005 22.400 1.00 30.00 N ATOM 748 CZ ARG 98 13.046 82.103 21.892 1.00 30.00 C ATOM 749 NH1 ARG 98 14.357 82.447 21.728 1.00 30.00 H ATOM 750 NH2 ARG 98 12.625 80.852 21.544 1.00 30.00 H ATOM 751 N GLY 99 11.753 86.052 17.410 1.00 30.00 N ATOM 752 CA GLY 99 10.514 85.830 16.726 1.00 30.00 C ATOM 753 C GLY 99 10.652 84.719 15.744 1.00 30.00 C ATOM 754 O GLY 99 11.637 84.601 15.021 1.00 30.00 O ATOM 755 N TRP 100 9.631 83.853 15.760 1.00 30.00 N ATOM 756 CA TRP 100 9.383 82.731 14.908 1.00 30.00 C ATOM 757 C TRP 100 8.707 83.190 13.651 1.00 30.00 C ATOM 758 O TRP 100 8.401 82.377 12.784 1.00 30.00 O ATOM 759 CB TRP 100 8.506 81.690 15.612 1.00 30.00 C ATOM 760 CG TRP 100 9.147 81.262 16.909 1.00 30.00 C ATOM 761 CD1 TRP 100 8.826 81.633 18.182 1.00 30.00 C ATOM 762 CD2 TRP 100 10.302 80.416 17.012 1.00 30.00 C ATOM 763 NE1 TRP 100 9.711 81.076 19.072 1.00 30.00 N ATOM 764 CE2 TRP 100 10.625 80.323 18.367 1.00 30.00 C ATOM 765 CE3 TRP 100 11.041 79.778 16.057 1.00 30.00 C ATOM 766 CZ2 TRP 100 11.695 79.587 18.788 1.00 30.00 C ATOM 767 CZ3 TRP 100 12.112 79.026 16.487 1.00 30.00 C ATOM 768 CH2 TRP 100 12.433 78.934 17.826 1.00 30.00 H ATOM 769 N GLU 101 8.336 84.482 13.570 1.00 30.00 N ATOM 770 CA GLU 101 7.498 84.943 12.495 1.00 30.00 C ATOM 771 C GLU 101 8.230 85.642 11.383 1.00 30.00 C ATOM 772 O GLU 101 9.139 86.441 11.591 1.00 30.00 O ATOM 773 CB GLU 101 6.397 85.871 13.029 1.00 30.00 C ATOM 774 CG GLU 101 6.965 87.009 13.878 1.00 30.00 C ATOM 775 CD GLU 101 5.859 87.518 14.789 1.00 30.00 C ATOM 776 OE1 GLU 101 4.691 87.080 14.610 1.00 30.00 O ATOM 777 OE2 GLU 101 6.168 88.349 15.684 1.00 30.00 O ATOM 778 N CYS 102 7.815 85.322 10.139 1.00 30.00 N ATOM 779 CA CYS 102 8.313 85.889 8.925 1.00 30.00 C ATOM 780 C CYS 102 7.608 87.188 8.731 1.00 30.00 C ATOM 781 O CYS 102 6.539 87.425 9.295 1.00 30.00 O ATOM 782 CB CYS 102 8.005 85.046 7.675 1.00 30.00 C ATOM 783 SG CYS 102 8.739 83.385 7.728 1.00 30.00 S ATOM 784 N THR 103 8.225 88.076 7.934 1.00 30.00 N ATOM 785 CA THR 103 7.638 89.334 7.598 1.00 30.00 C ATOM 786 C THR 103 7.717 89.400 6.116 1.00 30.00 C ATOM 787 O THR 103 8.550 88.729 5.511 1.00 30.00 O ATOM 788 CB THR 103 8.407 90.498 8.138 1.00 30.00 C ATOM 789 OG1 THR 103 9.736 90.463 7.637 1.00 30.00 O ATOM 790 CG2 THR 103 8.408 90.422 9.676 1.00 30.00 C ATOM 791 N LYS 104 6.846 90.208 5.487 1.00 30.00 N ATOM 792 CA LYS 104 6.833 90.258 4.057 1.00 30.00 C ATOM 793 C LYS 104 8.164 90.747 3.588 1.00 30.00 C ATOM 794 O LYS 104 8.690 90.258 2.589 1.00 30.00 O ATOM 795 CB LYS 104 5.747 91.190 3.497 1.00 30.00 C ATOM 796 CG LYS 104 4.340 90.620 3.673 1.00 30.00 C ATOM 797 CD LYS 104 3.898 90.513 5.133 1.00 30.00 C ATOM 798 CE LYS 104 2.516 89.877 5.306 1.00 30.00 C ATOM 799 NZ LYS 104 1.488 90.707 4.636 1.00 30.00 N ATOM 800 N ASP 105 8.748 91.737 4.287 1.00 30.00 N ATOM 801 CA ASP 105 10.013 92.243 3.845 1.00 30.00 C ATOM 802 C ASP 105 11.071 91.194 3.991 1.00 30.00 C ATOM 803 O ASP 105 11.928 91.047 3.120 1.00 30.00 O ATOM 804 CB ASP 105 10.472 93.535 4.559 1.00 30.00 C ATOM 805 CG ASP 105 10.653 93.303 6.052 1.00 30.00 C ATOM 806 OD1 ASP 105 9.681 92.866 6.721 1.00 30.00 O ATOM 807 OD2 ASP 105 11.777 93.575 6.551 1.00 30.00 O ATOM 808 N ARG 106 11.028 90.409 5.084 1.00 30.00 N ATOM 809 CA ARG 106 12.057 89.440 5.319 1.00 30.00 C ATOM 810 C ARG 106 12.088 88.427 4.228 1.00 30.00 C ATOM 811 O ARG 106 13.171 88.040 3.791 1.00 30.00 O ATOM 812 CB ARG 106 11.913 88.681 6.648 1.00 30.00 C ATOM 813 CG ARG 106 12.405 89.476 7.856 1.00 30.00 C ATOM 814 CD ARG 106 12.608 88.604 9.095 1.00 30.00 C ATOM 815 NE ARG 106 13.344 89.416 10.103 1.00 30.00 N ATOM 816 CZ ARG 106 14.710 89.399 10.126 1.00 30.00 C ATOM 817 NH1 ARG 106 15.400 88.673 9.198 1.00 30.00 H ATOM 818 NH2 ARG 106 15.384 90.109 11.077 1.00 30.00 H ATOM 819 N CYS 107 10.913 87.965 3.756 1.00 30.00 N ATOM 820 CA CYS 107 10.940 86.991 2.703 1.00 30.00 C ATOM 821 C CYS 107 11.649 87.640 1.564 1.00 30.00 C ATOM 822 O CYS 107 11.333 88.768 1.188 1.00 30.00 O ATOM 823 CB CYS 107 9.548 86.554 2.188 1.00 30.00 C ATOM 824 SG CYS 107 8.616 85.501 3.346 1.00 30.00 S ATOM 825 N GLY 108 12.643 86.937 0.994 1.00 30.00 N ATOM 826 CA GLY 108 13.398 87.513 -0.072 1.00 30.00 C ATOM 827 C GLY 108 14.550 88.273 0.511 1.00 30.00 C ATOM 828 O GLY 108 15.122 89.136 -0.153 1.00 30.00 O ATOM 829 N GLU 109 14.916 87.985 1.779 1.00 30.00 N ATOM 830 CA GLU 109 16.019 88.677 2.389 1.00 30.00 C ATOM 831 C GLU 109 17.137 87.700 2.597 1.00 30.00 C ATOM 832 O GLU 109 16.973 86.684 3.269 1.00 30.00 O ATOM 833 CB GLU 109 15.670 89.267 3.767 1.00 30.00 C ATOM 834 CG GLU 109 16.830 90.004 4.438 1.00 30.00 C ATOM 835 CD GLU 109 16.329 90.531 5.775 1.00 30.00 C ATOM 836 OE1 GLU 109 15.097 90.773 5.887 1.00 30.00 O ATOM 837 OE2 GLU 109 17.168 90.702 6.701 1.00 30.00 O ATOM 838 N VAL 110 18.306 87.983 1.990 1.00 30.00 N ATOM 839 CA VAL 110 19.463 87.144 2.114 1.00 30.00 C ATOM 840 C VAL 110 20.029 87.215 3.500 1.00 30.00 C ATOM 841 O VAL 110 20.385 86.196 4.091 1.00 30.00 O ATOM 842 CB VAL 110 20.567 87.532 1.177 1.00 30.00 C ATOM 843 CG1 VAL 110 21.792 86.650 1.477 1.00 30.00 C ATOM 844 CG2 VAL 110 20.055 87.414 -0.269 1.00 30.00 C ATOM 845 N ARG 111 20.126 88.430 4.067 1.00 30.00 N ATOM 846 CA ARG 111 20.786 88.562 5.333 1.00 30.00 C ATOM 847 C ARG 111 19.924 88.059 6.440 1.00 30.00 C ATOM 848 O ARG 111 18.707 88.242 6.446 1.00 30.00 O ATOM 849 CB ARG 111 21.203 90.008 5.662 1.00 30.00 C ATOM 850 CG ARG 111 20.042 91.006 5.655 1.00 30.00 C ATOM 851 CD ARG 111 19.531 91.308 4.246 1.00 30.00 C ATOM 852 NE ARG 111 20.715 91.708 3.435 1.00 30.00 N ATOM 853 CZ ARG 111 20.766 91.420 2.102 1.00 30.00 C ATOM 854 NH1 ARG 111 19.708 90.811 1.491 1.00 30.00 H ATOM 855 NH2 ARG 111 21.877 91.746 1.379 1.00 30.00 H ATOM 856 N ASN 112 20.561 87.349 7.394 1.00 30.00 N ATOM 857 CA ASN 112 19.882 86.907 8.576 1.00 30.00 C ATOM 858 C ASN 112 20.862 87.095 9.690 1.00 30.00 C ATOM 859 O ASN 112 21.470 86.131 10.153 1.00 30.00 O ATOM 860 CB ASN 112 19.518 85.413 8.534 1.00 30.00 C ATOM 861 CG ASN 112 18.464 85.223 7.451 1.00 30.00 C ATOM 862 OD1 ASN 112 17.381 85.801 7.514 1.00 30.00 O ATOM 863 ND2 ASN 112 18.794 84.399 6.420 1.00 30.00 N ATOM 864 N GLU 113 21.035 88.345 10.166 1.00 30.00 N ATOM 865 CA GLU 113 22.042 88.571 11.161 1.00 30.00 C ATOM 866 C GLU 113 21.685 87.843 12.414 1.00 30.00 C ATOM 867 O GLU 113 22.449 87.005 12.890 1.00 30.00 O ATOM 868 CB GLU 113 22.203 90.058 11.520 1.00 30.00 C ATOM 869 CG GLU 113 22.679 90.919 10.347 1.00 30.00 C ATOM 870 CD GLU 113 24.067 90.443 9.935 1.00 30.00 C ATOM 871 OE1 GLU 113 24.608 89.530 10.615 1.00 30.00 O ATOM 872 OE2 GLU 113 24.603 90.984 8.931 1.00 30.00 O ATOM 873 N GLU 114 20.490 88.117 12.967 1.00 30.00 N ATOM 874 CA GLU 114 20.109 87.455 14.181 1.00 30.00 C ATOM 875 C GLU 114 18.718 86.983 13.944 1.00 30.00 C ATOM 876 O GLU 114 17.773 87.759 14.080 1.00 30.00 O ATOM 877 CB GLU 114 20.026 88.417 15.379 1.00 30.00 C ATOM 878 CG GLU 114 21.339 89.142 15.691 1.00 30.00 C ATOM 879 CD GLU 114 22.211 88.250 16.561 1.00 30.00 C ATOM 880 OE1 GLU 114 21.641 87.479 17.377 1.00 30.00 O ATOM 881 OE2 GLU 114 23.462 88.333 16.423 1.00 30.00 O ATOM 882 N ASN 115 18.536 85.697 13.592 1.00 30.00 N ATOM 883 CA ASN 115 17.183 85.316 13.316 1.00 30.00 C ATOM 884 C ASN 115 16.943 83.934 13.829 1.00 30.00 C ATOM 885 O ASN 115 17.804 83.061 13.739 1.00 30.00 O ATOM 886 CB ASN 115 16.865 85.321 11.811 1.00 30.00 C ATOM 887 CG ASN 115 15.360 85.456 11.620 1.00 30.00 C ATOM 888 OD1 ASN 115 14.576 85.259 12.547 1.00 30.00 O ATOM 889 ND2 ASN 115 14.944 85.815 10.376 1.00 30.00 N ATOM 890 N ALA 116 15.756 83.725 14.426 1.00 30.00 N ATOM 891 CA ALA 116 15.353 82.437 14.913 1.00 30.00 C ATOM 892 C ALA 116 15.145 81.511 13.748 1.00 30.00 C ATOM 893 O ALA 116 15.544 80.349 13.782 1.00 30.00 O ATOM 894 CB ALA 116 14.035 82.475 15.711 1.00 30.00 C ATOM 895 N CYS 117 14.504 82.011 12.676 1.00 30.00 N ATOM 896 CA CYS 117 14.207 81.186 11.541 1.00 30.00 C ATOM 897 C CYS 117 14.550 81.968 10.316 1.00 30.00 C ATOM 898 O CYS 117 14.474 83.195 10.318 1.00 30.00 O ATOM 899 CB CYS 117 12.722 80.778 11.489 1.00 30.00 C ATOM 900 SG CYS 117 11.632 82.188 11.824 1.00 30.00 S ATOM 901 N HIS 118 14.949 81.277 9.230 1.00 30.00 N ATOM 902 CA HIS 118 15.315 81.990 8.042 1.00 30.00 C ATOM 903 C HIS 118 14.073 82.222 7.245 1.00 30.00 C ATOM 904 O HIS 118 13.276 81.308 7.040 1.00 30.00 O ATOM 905 CB HIS 118 16.298 81.218 7.149 1.00 30.00 C ATOM 906 CG HIS 118 17.636 81.029 7.794 1.00 30.00 C ATOM 907 ND1 HIS 118 18.695 81.893 7.629 1.00 30.00 N ATOM 908 CD2 HIS 118 18.081 80.050 8.627 1.00 30.00 C ATOM 909 CE1 HIS 118 19.722 81.399 8.365 1.00 30.00 C ATOM 910 NE2 HIS 118 19.397 80.280 8.988 1.00 30.00 N ATOM 911 N CYS 119 13.875 83.472 6.777 1.00 30.00 N ATOM 912 CA CYS 119 12.677 83.770 6.047 1.00 30.00 C ATOM 913 C CYS 119 13.068 84.142 4.653 1.00 30.00 C ATOM 914 O CYS 119 13.019 85.318 4.295 1.00 30.00 O ATOM 915 CB CYS 119 11.939 85.008 6.585 1.00 30.00 C ATOM 916 SG CYS 119 11.493 84.883 8.339 1.00 30.00 S ATOM 917 N SER 120 13.436 83.159 3.808 1.00 30.00 N ATOM 918 CA SER 120 13.815 83.528 2.476 1.00 30.00 C ATOM 919 C SER 120 13.599 82.355 1.573 1.00 30.00 C ATOM 920 O SER 120 13.133 81.299 1.989 1.00 30.00 O ATOM 921 CB SER 120 15.289 83.951 2.350 1.00 30.00 C ATOM 922 OG SER 120 16.140 82.862 2.676 1.00 30.00 O ATOM 923 N GLU 121 13.940 82.517 0.284 1.00 30.00 N ATOM 924 CA GLU 121 13.727 81.460 -0.656 1.00 30.00 C ATOM 925 C GLU 121 14.534 80.288 -0.207 1.00 30.00 C ATOM 926 O GLU 121 14.115 79.141 -0.360 1.00 30.00 O ATOM 927 CB GLU 121 14.185 81.807 -2.085 1.00 30.00 C ATOM 928 CG GLU 121 15.691 82.044 -2.220 1.00 30.00 C ATOM 929 CD GLU 121 16.019 83.410 -1.639 1.00 30.00 C ATOM 930 OE1 GLU 121 15.065 84.205 -1.423 1.00 30.00 O ATOM 931 OE2 GLU 121 17.229 83.678 -1.407 1.00 30.00 O ATOM 932 N ASP 122 15.725 80.550 0.360 1.00 30.00 N ATOM 933 CA ASP 122 16.580 79.484 0.787 1.00 30.00 C ATOM 934 C ASP 122 15.872 78.706 1.847 1.00 30.00 C ATOM 935 O ASP 122 15.923 77.478 1.864 1.00 30.00 O ATOM 936 CB ASP 122 17.914 79.974 1.382 1.00 30.00 C ATOM 937 CG ASP 122 18.833 78.770 1.569 1.00 30.00 C ATOM 938 OD1 ASP 122 18.387 77.629 1.275 1.00 30.00 O ATOM 939 OD2 ASP 122 19.996 78.977 2.007 1.00 30.00 O ATOM 940 N CYS 123 15.164 79.400 2.757 1.00 30.00 N ATOM 941 CA CYS 123 14.527 78.685 3.818 1.00 30.00 C ATOM 942 C CYS 123 13.460 77.822 3.227 1.00 30.00 C ATOM 943 O CYS 123 13.112 76.799 3.805 1.00 30.00 O ATOM 944 CB CYS 123 13.929 79.554 4.940 1.00 30.00 C ATOM 945 SG CYS 123 12.328 80.295 4.535 1.00 30.00 S ATOM 946 N LEU 124 12.880 78.211 2.076 1.00 30.00 N ATOM 947 CA LEU 124 11.867 77.376 1.493 1.00 30.00 C ATOM 948 C LEU 124 12.481 76.050 1.160 1.00 30.00 C ATOM 949 O LEU 124 11.895 75.001 1.421 1.00 30.00 O ATOM 950 CB LEU 124 11.293 77.939 0.178 1.00 30.00 C ATOM 951 CG LEU 124 10.211 77.036 -0.449 1.00 30.00 C ATOM 952 CD1 LEU 124 8.983 76.914 0.467 1.00 30.00 C ATOM 953 CD2 LEU 124 9.854 77.493 -1.875 1.00 30.00 C ATOM 954 N SER 125 13.688 76.061 0.569 1.00 30.00 N ATOM 955 CA SER 125 14.302 74.823 0.190 1.00 30.00 C ATOM 956 C SER 125 14.609 74.021 1.418 1.00 30.00 C ATOM 957 O SER 125 14.235 72.854 1.518 1.00 30.00 O ATOM 958 CB SER 125 15.630 75.013 -0.569 1.00 30.00 C ATOM 959 OG SER 125 15.407 75.688 -1.798 1.00 30.00 O ATOM 960 N ARG 126 15.289 74.647 2.397 1.00 30.00 N ATOM 961 CA ARG 126 15.742 73.971 3.581 1.00 30.00 C ATOM 962 C ARG 126 14.599 73.534 4.446 1.00 30.00 C ATOM 963 O ARG 126 14.648 72.460 5.045 1.00 30.00 O ATOM 964 CB ARG 126 16.707 74.826 4.417 1.00 30.00 C ATOM 965 CG ARG 126 18.029 75.065 3.686 1.00 30.00 C ATOM 966 CD ARG 126 19.118 75.709 4.541 1.00 30.00 C ATOM 967 NE ARG 126 20.313 75.859 3.665 1.00 30.00 N ATOM 968 CZ ARG 126 21.516 76.208 4.202 1.00 30.00 C ATOM 969 NH1 ARG 126 21.618 76.434 5.544 1.00 30.00 H ATOM 970 NH2 ARG 126 22.614 76.333 3.401 1.00 30.00 H ATOM 971 N GLY 127 13.523 74.334 4.513 1.00 30.00 N ATOM 972 CA GLY 127 12.444 74.044 5.410 1.00 30.00 C ATOM 973 C GLY 127 12.640 74.934 6.600 1.00 30.00 C ATOM 974 O GLY 127 11.893 74.880 7.575 1.00 30.00 O ATOM 975 N ASP 128 13.645 75.825 6.504 1.00 30.00 N ATOM 976 CA ASP 128 14.027 76.747 7.535 1.00 30.00 C ATOM 977 C ASP 128 12.865 77.637 7.796 1.00 30.00 C ATOM 978 O ASP 128 12.763 78.224 8.872 1.00 30.00 O ATOM 979 CB ASP 128 15.199 77.654 7.116 1.00 30.00 C ATOM 980 CG ASP 128 16.463 76.812 7.013 1.00 30.00 C ATOM 981 OD1 ASP 128 16.675 75.949 7.905 1.00 30.00 O ATOM 982 OD2 ASP 128 17.232 77.018 6.037 1.00 30.00 O ATOM 983 N CYS 129 11.975 77.740 6.788 1.00 30.00 N ATOM 984 CA CYS 129 10.829 78.602 6.759 1.00 30.00 C ATOM 985 C CYS 129 10.188 78.613 8.098 1.00 30.00 C ATOM 986 O CYS 129 9.899 77.574 8.690 1.00 30.00 O ATOM 987 CB CYS 129 9.742 78.099 5.799 1.00 30.00 C ATOM 988 SG CYS 129 10.316 77.848 4.097 1.00 30.00 S ATOM 989 N CYS 130 9.946 79.829 8.611 1.00 30.00 N ATOM 990 CA CYS 130 9.313 79.960 9.880 1.00 30.00 C ATOM 991 C CYS 130 7.952 79.408 9.652 1.00 30.00 C ATOM 992 O CYS 130 7.546 79.177 8.514 1.00 30.00 O ATOM 993 CB CYS 130 9.112 81.420 10.308 1.00 30.00 C ATOM 994 SG CYS 130 10.598 82.439 10.105 1.00 30.00 S ATOM 995 N THR 131 7.207 79.161 10.737 1.00 30.00 N ATOM 996 CA THR 131 5.894 78.639 10.546 1.00 30.00 C ATOM 997 C THR 131 5.146 79.643 9.742 1.00 30.00 C ATOM 998 O THR 131 4.415 79.290 8.817 1.00 30.00 O ATOM 999 CB THR 131 5.150 78.463 11.833 1.00 30.00 C ATOM 1000 OG1 THR 131 5.863 77.584 12.688 1.00 30.00 O ATOM 1001 CG2 THR 131 3.761 77.882 11.519 1.00 30.00 C ATOM 1002 N ASN 132 5.328 80.941 10.045 1.00 30.00 N ATOM 1003 CA ASN 132 4.521 81.830 9.276 1.00 30.00 C ATOM 1004 C ASN 132 5.184 82.188 7.988 1.00 30.00 C ATOM 1005 O ASN 132 4.854 83.192 7.361 1.00 30.00 O ATOM 1006 CB ASN 132 4.041 83.092 10.009 1.00 30.00 C ATOM 1007 CG ASN 132 5.244 83.890 10.419 1.00 30.00 C ATOM 1008 OD1 ASN 132 6.283 83.291 10.686 1.00 30.00 O ATOM 1009 ND2 ASN 132 5.098 85.241 10.475 1.00 30.00 N ATOM 1010 N TYR 133 6.078 81.308 7.517 1.00 30.00 N ATOM 1011 CA TYR 133 6.716 81.457 6.244 1.00 30.00 C ATOM 1012 C TYR 133 5.621 81.384 5.234 1.00 30.00 C ATOM 1013 O TYR 133 5.574 82.145 4.271 1.00 30.00 O ATOM 1014 CB TYR 133 7.661 80.271 5.988 1.00 30.00 C ATOM 1015 CG TYR 133 8.105 80.213 4.565 1.00 30.00 C ATOM 1016 CD1 TYR 133 7.320 79.610 3.606 1.00 30.00 C ATOM 1017 CD2 TYR 133 9.315 80.745 4.188 1.00 30.00 C ATOM 1018 CE1 TYR 133 7.740 79.543 2.300 1.00 30.00 C ATOM 1019 CE2 TYR 133 9.741 80.676 2.881 1.00 30.00 C ATOM 1020 CZ TYR 133 8.953 80.074 1.934 1.00 30.00 C ATOM 1021 OH TYR 133 9.388 80.000 0.596 1.00 30.00 H ATOM 1022 N GLN 134 4.681 80.453 5.459 1.00 30.00 N ATOM 1023 CA GLN 134 3.629 80.244 4.513 1.00 30.00 C ATOM 1024 C GLN 134 2.881 81.519 4.376 1.00 30.00 C ATOM 1025 O GLN 134 2.581 81.960 3.265 1.00 30.00 O ATOM 1026 CB GLN 134 2.612 79.207 5.016 1.00 30.00 C ATOM 1027 CG GLN 134 3.237 77.845 5.301 1.00 30.00 C ATOM 1028 CD GLN 134 2.171 76.949 5.920 1.00 30.00 C ATOM 1029 OE1 GLN 134 2.429 76.244 6.894 1.00 30.00 O ATOM 1030 NE2 GLN 134 0.941 76.971 5.342 1.00 30.00 N ATOM 1031 N VAL 135 2.558 82.159 5.512 1.00 30.00 N ATOM 1032 CA VAL 135 1.778 83.344 5.373 1.00 30.00 C ATOM 1033 C VAL 135 2.570 84.396 4.662 1.00 30.00 C ATOM 1034 O VAL 135 2.100 84.967 3.679 1.00 30.00 O ATOM 1035 CB VAL 135 1.261 83.898 6.679 1.00 30.00 C ATOM 1036 CG1 VAL 135 0.393 82.816 7.336 1.00 30.00 C ATOM 1037 CG2 VAL 135 2.408 84.393 7.570 1.00 30.00 C ATOM 1038 N VAL 136 3.802 84.682 5.134 1.00 30.00 N ATOM 1039 CA VAL 136 4.545 85.755 4.539 1.00 30.00 C ATOM 1040 C VAL 136 5.003 85.456 3.147 1.00 30.00 C ATOM 1041 O VAL 136 4.589 86.111 2.191 1.00 30.00 O ATOM 1042 CB VAL 136 5.773 86.112 5.310 1.00 30.00 C ATOM 1043 CG1 VAL 136 6.458 87.251 4.542 1.00 30.00 C ATOM 1044 CG2 VAL 136 5.387 86.470 6.755 1.00 30.00 C ATOM 1045 N CYS 137 5.843 84.412 2.996 1.00 30.00 N ATOM 1046 CA CYS 137 6.449 84.161 1.724 1.00 30.00 C ATOM 1047 C CYS 137 5.402 83.819 0.720 1.00 30.00 C ATOM 1048 O CYS 137 5.384 84.376 -0.375 1.00 30.00 O ATOM 1049 CB CYS 137 7.538 83.078 1.766 1.00 30.00 C ATOM 1050 SG CYS 137 9.000 83.601 2.726 1.00 30.00 S ATOM 1051 N LYS 138 4.474 82.906 1.052 1.00 30.00 N ATOM 1052 CA LYS 138 3.457 82.648 0.076 1.00 30.00 C ATOM 1053 C LYS 138 2.207 83.231 0.630 1.00 30.00 C ATOM 1054 O LYS 138 1.337 82.500 1.101 1.00 30.00 O ATOM 1055 CB LYS 138 3.177 81.150 -0.139 1.00 30.00 C ATOM 1056 CG LYS 138 4.337 80.357 -0.748 1.00 30.00 C ATOM 1057 CD LYS 138 4.746 80.819 -2.147 1.00 30.00 C ATOM 1058 CE LYS 138 5.783 79.908 -2.809 1.00 30.00 C ATOM 1059 NZ LYS 138 7.001 79.831 -1.971 1.00 30.00 N ATOM 1060 N GLY 139 2.045 84.565 0.565 1.00 30.00 N ATOM 1061 CA GLY 139 0.850 85.024 1.194 1.00 30.00 C ATOM 1062 C GLY 139 0.208 86.097 0.395 1.00 30.00 C ATOM 1063 O GLY 139 0.121 87.243 0.835 1.00 30.00 O ATOM 1064 N GLU 140 -0.286 85.753 -0.804 1.00 30.00 N ATOM 1065 CA GLU 140 -1.083 86.732 -1.461 1.00 30.00 C ATOM 1066 C GLU 140 -2.377 86.565 -0.756 1.00 30.00 C ATOM 1067 O GLU 140 -3.236 85.792 -1.181 1.00 30.00 O ATOM 1068 CB GLU 140 -1.250 86.469 -2.962 1.00 30.00 C ATOM 1069 CG GLU 140 -0.056 86.951 -3.790 1.00 30.00 C ATOM 1070 CD GLU 140 -0.132 88.473 -3.907 1.00 30.00 C ATOM 1071 OE1 GLU 140 -0.880 89.098 -3.109 1.00 30.00 O ATOM 1072 OE2 GLU 140 0.556 89.028 -4.804 1.00 30.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 345 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 49.85 63.6 88 100.0 88 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 55.80 61.3 62 100.0 62 ARMSMC BURIED . . . . . . . . 31.39 69.2 26 100.0 26 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 74.02 59.0 39 100.0 39 ARMSSC1 RELIABLE SIDE CHAINS . 71.34 61.1 36 100.0 36 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 83.56 50.0 26 100.0 26 ARMSSC1 BURIED . . . . . . . . 49.72 76.9 13 100.0 13 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 68.26 56.5 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 59.89 61.1 18 100.0 18 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 62.72 56.2 16 100.0 16 ARMSSC2 BURIED . . . . . . . . 79.50 57.1 7 100.0 7 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 55.92 69.2 13 100.0 13 ARMSSC3 RELIABLE SIDE CHAINS . 51.19 75.0 12 100.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 50.92 80.0 10 100.0 10 ARMSSC3 BURIED . . . . . . . . 70.05 33.3 3 100.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 89.96 16.7 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 89.96 16.7 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 83.47 25.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 101.72 0.0 2 100.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.25 (Number of atoms: 45) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.25 45 100.0 45 CRMSCA CRN = ALL/NP . . . . . 0.0500 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 2.52 32 100.0 32 CRMSCA BURIED . . . . . . . . 1.37 13 100.0 13 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.37 221 100.0 221 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 2.66 156 100.0 156 CRMSMC BURIED . . . . . . . . 1.49 65 100.0 65 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 4.99 165 100.0 165 CRMSSC RELIABLE SIDE CHAINS . 5.11 145 100.0 145 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 5.26 112 100.0 112 CRMSSC BURIED . . . . . . . . 4.35 53 100.0 53 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.80 345 100.0 345 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 4.02 240 100.0 240 CRMSALL BURIED . . . . . . . . 3.23 105 100.0 105 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 28.199 0.890 0.898 45 100.0 45 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 27.946 0.875 0.885 32 100.0 32 ERRCA BURIED . . . . . . . . 28.823 0.925 0.929 13 100.0 13 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 28.103 0.885 0.893 221 100.0 221 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 27.825 0.869 0.879 156 100.0 156 ERRMC BURIED . . . . . . . . 28.771 0.923 0.926 65 100.0 65 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 26.280 0.794 0.821 165 100.0 165 ERRSC RELIABLE SIDE CHAINS . 26.250 0.794 0.821 145 100.0 145 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 25.953 0.777 0.806 112 100.0 112 ERRSC BURIED . . . . . . . . 26.972 0.830 0.851 53 100.0 53 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 27.283 0.844 0.861 345 100.0 345 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 27.020 0.830 0.848 240 100.0 240 ERRALL BURIED . . . . . . . . 27.884 0.877 0.889 105 100.0 105 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 12 30 39 43 45 45 45 DISTCA CA (P) 26.67 66.67 86.67 95.56 100.00 45 DISTCA CA (RMS) 0.73 1.13 1.45 1.94 2.25 DISTCA ALL (N) 56 191 255 301 333 345 345 DISTALL ALL (P) 16.23 55.36 73.91 87.25 96.52 345 DISTALL ALL (RMS) 0.75 1.29 1.66 2.14 2.96 DISTALL END of the results output