####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS361_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS361_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 56 - 95 2.13 2.13 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 38 57 - 94 1.96 2.16 LCS_AVERAGE: 92.62 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 73 - 93 0.98 2.21 LCS_AVERAGE: 35.25 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 4 12 40 3 5 14 16 22 32 35 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 57 S 57 4 38 40 4 5 27 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 58 C 58 5 38 40 3 6 10 18 26 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 59 K 59 8 38 40 4 8 21 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT G 60 G 60 8 38 40 3 15 27 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT R 61 R 61 8 38 40 11 23 27 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 62 C 62 8 38 40 11 23 27 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT F 63 F 63 8 38 40 10 23 27 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 64 E 64 8 38 40 4 23 27 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 65 L 65 8 38 40 4 23 27 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT Q 66 Q 66 8 38 40 8 23 27 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 67 E 67 8 38 40 3 6 21 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT V 68 V 68 5 38 40 3 5 5 11 16 27 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT G 69 G 69 5 38 40 3 5 15 29 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT P 70 P 70 4 38 40 3 11 16 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT P 71 P 71 4 38 40 3 4 5 8 10 26 34 37 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 72 D 72 5 38 40 3 7 12 16 23 27 32 36 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 73 C 73 21 38 40 6 23 27 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT R 74 R 74 21 38 40 11 23 27 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 75 C 75 21 38 40 6 23 27 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 76 D 76 21 38 40 5 13 25 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT N 77 N 77 21 38 40 4 9 14 29 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 78 L 78 21 38 40 11 23 27 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 79 C 79 21 38 40 11 23 27 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 80 K 80 21 38 40 4 23 27 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 81 S 81 21 38 40 8 23 27 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT Y 82 Y 82 21 38 40 8 19 27 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 83 S 83 21 38 40 8 23 27 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 84 S 84 21 38 40 11 23 27 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 85 C 85 21 38 40 6 23 27 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 86 C 86 21 38 40 8 23 27 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT H 87 H 87 21 38 40 11 23 27 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 88 D 88 21 38 40 11 23 27 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT F 89 F 89 21 38 40 11 23 27 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 90 D 90 21 38 40 11 23 27 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 91 E 91 21 38 40 11 23 27 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 92 L 92 21 38 40 5 23 27 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 93 C 93 21 38 40 4 17 27 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 94 L 94 8 38 40 2 8 12 28 32 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 95 K 95 7 26 40 0 3 11 12 19 32 37 38 40 40 40 40 40 40 40 40 40 40 40 40 LCS_AVERAGE LCS_A: 75.96 ( 35.25 92.62 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 23 27 31 33 35 37 38 40 40 40 40 40 40 40 40 40 40 40 40 GDT PERCENT_AT 27.50 57.50 67.50 77.50 82.50 87.50 92.50 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.40 0.75 0.89 1.19 1.35 1.50 1.73 1.83 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 GDT RMS_ALL_AT 2.38 2.28 2.21 2.15 2.16 2.17 2.18 2.17 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 # Checking swapping # possible swapping detected: E 67 E 67 # possible swapping detected: Y 82 Y 82 # possible swapping detected: E 91 E 91 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 3.891 0 0.687 0.687 4.534 55.119 55.119 LGA S 57 S 57 1.408 0 0.124 0.592 4.022 73.452 62.381 LGA C 58 C 58 3.476 0 0.683 0.647 8.017 65.238 47.143 LGA K 59 K 59 1.810 0 0.599 1.228 3.883 61.429 65.344 LGA G 60 G 60 1.437 0 0.223 0.223 1.437 81.429 81.429 LGA R 61 R 61 1.423 0 0.212 1.236 5.197 83.690 72.814 LGA C 62 C 62 1.349 0 0.056 0.917 2.529 81.429 75.952 LGA F 63 F 63 1.045 0 0.095 0.212 1.461 83.690 82.251 LGA E 64 E 64 1.216 0 0.052 0.227 1.889 83.690 77.672 LGA L 65 L 65 1.226 0 0.114 0.831 2.891 79.286 73.155 LGA Q 66 Q 66 1.430 0 0.020 1.157 4.907 83.929 65.450 LGA E 67 E 67 1.837 0 0.046 1.440 9.099 81.667 46.508 LGA V 68 V 68 3.823 0 0.581 0.626 6.064 40.714 33.197 LGA G 69 G 69 2.664 0 0.028 0.028 2.664 69.405 69.405 LGA P 70 P 70 1.778 0 0.028 0.225 5.398 51.548 44.082 LGA P 71 P 71 5.348 0 0.210 0.581 8.207 26.667 20.408 LGA D 72 D 72 5.696 3 0.690 0.646 7.122 33.333 17.917 LGA C 73 C 73 1.883 0 0.101 0.643 3.416 65.119 66.349 LGA R 74 R 74 0.758 0 0.055 1.181 4.268 85.952 76.797 LGA C 75 C 75 0.944 0 0.316 0.345 1.341 85.952 84.444 LGA D 76 D 76 2.115 0 0.092 0.719 2.925 66.786 67.917 LGA N 77 N 77 2.826 0 0.074 1.118 6.132 62.976 45.000 LGA L 78 L 78 0.846 0 0.174 0.776 4.442 85.952 70.357 LGA C 79 C 79 1.082 0 0.045 0.619 1.729 83.690 80.079 LGA K 80 K 80 1.335 0 0.032 1.209 5.665 81.429 66.085 LGA S 81 S 81 0.837 0 0.035 0.032 0.978 90.476 90.476 LGA Y 82 Y 82 0.954 0 0.117 0.200 2.407 88.214 77.381 LGA S 83 S 83 0.833 0 0.230 0.222 1.341 88.214 85.952 LGA S 84 S 84 0.657 0 0.265 0.283 1.472 88.214 92.143 LGA C 85 C 85 1.317 0 0.057 0.257 1.696 83.690 81.508 LGA C 86 C 86 0.744 0 0.054 0.136 1.932 92.976 87.698 LGA H 87 H 87 0.295 0 0.120 1.168 6.158 100.000 65.476 LGA D 88 D 88 1.078 0 0.192 1.142 4.013 85.952 73.988 LGA F 89 F 89 1.138 0 0.087 0.145 1.491 81.429 81.429 LGA D 90 D 90 1.341 0 0.039 0.766 2.070 81.429 78.274 LGA E 91 E 91 1.253 0 0.124 1.171 4.664 81.429 70.370 LGA L 92 L 92 0.725 0 0.150 1.065 3.995 92.857 81.310 LGA C 93 C 93 0.789 0 0.523 0.499 3.563 76.667 79.921 LGA L 94 L 94 2.538 0 0.119 1.425 5.456 62.976 59.107 LGA K 95 K 95 3.895 0 0.344 0.804 13.402 53.810 27.672 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 2.134 2.052 3.009 75.048 66.999 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 38 1.83 82.500 88.189 1.966 LGA_LOCAL RMSD: 1.832 Number of atoms: 38 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.172 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 2.134 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.688767 * X + 0.679522 * Y + 0.252687 * Z + 26.398266 Y_new = 0.715340 * X + 0.693648 * Y + 0.084504 * Z + 74.965134 Z_new = -0.117853 * X + 0.238960 * Y + -0.963851 * Z + -2.521253 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.337271 0.118128 2.898570 [DEG: 133.9158 6.7682 166.0758 ] ZXZ: 1.893527 2.871893 -0.458186 [DEG: 108.4911 164.5473 -26.2521 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS361_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS361_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 38 1.83 88.189 2.13 REMARK ---------------------------------------------------------- MOLECULE T0543TS361_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT N/A ATOM 422 N GLY 56 33.864 75.381 21.046 1.00 30.00 N ATOM 423 CA GLY 56 32.592 75.871 20.603 1.00 30.00 C ATOM 424 C GLY 56 31.929 74.811 19.782 1.00 30.00 C ATOM 425 O GLY 56 32.062 73.618 20.053 1.00 30.00 O ATOM 426 N SER 57 31.187 75.249 18.739 1.00 30.00 N ATOM 427 CA SER 57 30.450 74.339 17.914 1.00 30.00 C ATOM 428 C SER 57 30.461 74.820 16.503 1.00 30.00 C ATOM 429 O SER 57 30.762 75.979 16.225 1.00 30.00 O ATOM 430 CB SER 57 28.967 74.273 18.298 1.00 30.00 C ATOM 431 OG SER 57 28.358 75.542 18.110 1.00 30.00 O ATOM 432 N CYS 58 30.107 73.911 15.571 1.00 30.00 N ATOM 433 CA CYS 58 30.056 74.243 14.180 1.00 30.00 C ATOM 434 C CYS 58 28.618 74.440 13.826 1.00 30.00 C ATOM 435 O CYS 58 27.718 73.885 14.454 1.00 30.00 O ATOM 436 CB CYS 58 30.618 73.146 13.258 1.00 30.00 C ATOM 437 SG CYS 58 32.393 72.859 13.525 1.00 30.00 S ATOM 438 N LYS 59 28.376 75.252 12.786 1.00 30.00 N ATOM 439 CA LYS 59 27.056 75.602 12.360 1.00 30.00 C ATOM 440 C LYS 59 26.350 74.354 11.945 1.00 30.00 C ATOM 441 O LYS 59 25.163 74.178 12.212 1.00 30.00 O ATOM 442 CB LYS 59 27.115 76.563 11.166 1.00 30.00 C ATOM 443 CG LYS 59 27.896 77.831 11.515 1.00 30.00 C ATOM 444 CD LYS 59 28.404 78.603 10.297 1.00 30.00 C ATOM 445 CE LYS 59 29.431 79.679 10.655 1.00 30.00 C ATOM 446 NZ LYS 59 30.623 79.057 11.277 1.00 30.00 N ATOM 447 N GLY 60 27.072 73.452 11.262 1.00 30.00 N ATOM 448 CA GLY 60 26.512 72.210 10.816 1.00 30.00 C ATOM 449 C GLY 60 26.162 71.372 12.007 1.00 30.00 C ATOM 450 O GLY 60 25.199 70.608 11.980 1.00 30.00 O ATOM 451 N ARG 61 26.982 71.471 13.068 1.00 30.00 N ATOM 452 CA ARG 61 26.853 70.696 14.270 1.00 30.00 C ATOM 453 C ARG 61 25.599 71.050 15.003 1.00 30.00 C ATOM 454 O ARG 61 24.987 70.186 15.629 1.00 30.00 O ATOM 455 CB ARG 61 28.033 70.916 15.231 1.00 30.00 C ATOM 456 CG ARG 61 29.366 70.432 14.652 1.00 30.00 C ATOM 457 CD ARG 61 29.931 69.171 15.317 1.00 30.00 C ATOM 458 NE ARG 61 28.862 68.132 15.330 1.00 30.00 N ATOM 459 CZ ARG 61 29.169 66.828 15.604 1.00 30.00 C ATOM 460 NH1 ARG 61 30.469 66.447 15.768 1.00 30.00 H ATOM 461 NH2 ARG 61 28.174 65.899 15.707 1.00 30.00 H ATOM 462 N CYS 62 25.183 72.331 14.939 1.00 30.00 N ATOM 463 CA CYS 62 24.066 72.815 15.705 1.00 30.00 C ATOM 464 C CYS 62 22.882 71.928 15.482 1.00 30.00 C ATOM 465 O CYS 62 22.603 71.502 14.363 1.00 30.00 O ATOM 466 CB CYS 62 23.641 74.242 15.320 1.00 30.00 C ATOM 467 SG CYS 62 22.744 74.309 13.740 1.00 30.00 S ATOM 468 N PHE 63 22.155 71.638 16.584 1.00 30.00 N ATOM 469 CA PHE 63 21.012 70.768 16.582 1.00 30.00 C ATOM 470 C PHE 63 21.399 69.428 16.043 1.00 30.00 C ATOM 471 O PHE 63 20.633 68.787 15.323 1.00 30.00 O ATOM 472 CB PHE 63 19.798 71.300 15.800 1.00 30.00 C ATOM 473 CG PHE 63 19.167 72.366 16.632 1.00 30.00 C ATOM 474 CD1 PHE 63 18.348 72.029 17.687 1.00 30.00 C ATOM 475 CD2 PHE 63 19.381 73.695 16.357 1.00 30.00 C ATOM 476 CE1 PHE 63 17.756 72.999 18.461 1.00 30.00 C ATOM 477 CE2 PHE 63 18.792 74.671 17.127 1.00 30.00 C ATOM 478 CZ PHE 63 17.979 74.326 18.181 1.00 30.00 C ATOM 479 N GLU 64 22.617 68.976 16.396 1.00 30.00 N ATOM 480 CA GLU 64 23.119 67.703 15.968 1.00 30.00 C ATOM 481 C GLU 64 22.330 66.639 16.657 1.00 30.00 C ATOM 482 O GLU 64 22.098 66.698 17.865 1.00 30.00 O ATOM 483 CB GLU 64 24.586 67.514 16.373 1.00 30.00 C ATOM 484 CG GLU 64 24.757 67.605 17.892 1.00 30.00 C ATOM 485 CD GLU 64 26.233 67.785 18.201 1.00 30.00 C ATOM 486 OE1 GLU 64 27.004 68.053 17.243 1.00 30.00 O ATOM 487 OE2 GLU 64 26.607 67.672 19.398 1.00 30.00 O ATOM 488 N LEU 65 21.852 65.658 15.872 1.00 30.00 N ATOM 489 CA LEU 65 21.068 64.580 16.392 1.00 30.00 C ATOM 490 C LEU 65 21.931 63.597 17.145 1.00 30.00 C ATOM 491 O LEU 65 21.583 63.201 18.257 1.00 30.00 O ATOM 492 CB LEU 65 20.338 63.842 15.256 1.00 30.00 C ATOM 493 CG LEU 65 19.146 62.962 15.680 1.00 30.00 C ATOM 494 CD1 LEU 65 18.628 62.145 14.486 1.00 30.00 C ATOM 495 CD2 LEU 65 19.426 62.099 16.915 1.00 30.00 C ATOM 496 N GLN 66 23.088 63.176 16.578 1.00 30.00 N ATOM 497 CA GLN 66 23.827 62.122 17.233 1.00 30.00 C ATOM 498 C GLN 66 25.240 62.543 17.485 1.00 30.00 C ATOM 499 O GLN 66 25.862 63.197 16.650 1.00 30.00 O ATOM 500 CB GLN 66 23.863 60.807 16.429 1.00 30.00 C ATOM 501 CG GLN 66 24.603 60.902 15.090 1.00 30.00 C ATOM 502 CD GLN 66 26.091 60.674 15.326 1.00 30.00 C ATOM 503 OE1 GLN 66 26.927 61.051 14.504 1.00 30.00 O ATOM 504 NE2 GLN 66 26.437 60.032 16.473 1.00 30.00 N ATOM 505 N GLU 67 25.792 62.149 18.655 1.00 30.00 N ATOM 506 CA GLU 67 27.119 62.559 19.021 1.00 30.00 C ATOM 507 C GLU 67 28.062 61.401 18.929 1.00 30.00 C ATOM 508 O GLU 67 27.895 60.380 19.594 1.00 30.00 O ATOM 509 CB GLU 67 27.209 63.087 20.462 1.00 30.00 C ATOM 510 CG GLU 67 28.616 63.528 20.873 1.00 30.00 C ATOM 511 CD GLU 67 28.893 64.886 20.242 1.00 30.00 C ATOM 512 OE1 GLU 67 27.914 65.534 19.790 1.00 30.00 O ATOM 513 OE2 GLU 67 30.085 65.292 20.204 1.00 30.00 O ATOM 514 N VAL 68 29.060 61.537 18.040 1.00 30.00 N ATOM 515 CA VAL 68 30.101 60.568 17.875 1.00 30.00 C ATOM 516 C VAL 68 31.050 60.646 19.030 1.00 30.00 C ATOM 517 O VAL 68 31.508 59.626 19.541 1.00 30.00 O ATOM 518 CB VAL 68 30.916 60.818 16.646 1.00 30.00 C ATOM 519 CG1 VAL 68 32.001 59.738 16.572 1.00 30.00 C ATOM 520 CG2 VAL 68 29.978 60.874 15.428 1.00 30.00 C ATOM 521 N GLY 69 31.348 61.883 19.475 1.00 30.00 N ATOM 522 CA GLY 69 32.368 62.115 20.456 1.00 30.00 C ATOM 523 C GLY 69 31.809 62.016 21.836 1.00 30.00 C ATOM 524 O GLY 69 30.889 61.251 22.119 1.00 30.00 O ATOM 525 N PRO 70 32.427 62.765 22.712 1.00 30.00 N ATOM 526 CA PRO 70 32.029 62.743 24.093 1.00 30.00 C ATOM 527 C PRO 70 30.702 63.379 24.338 1.00 30.00 C ATOM 528 O PRO 70 30.328 64.329 23.651 1.00 30.00 O ATOM 529 CB PRO 70 33.178 63.380 24.870 1.00 30.00 C ATOM 530 CG PRO 70 34.411 63.082 24.000 1.00 30.00 C ATOM 531 CD PRO 70 33.854 63.006 22.567 1.00 30.00 C ATOM 532 N PRO 71 30.003 62.837 25.295 1.00 30.00 N ATOM 533 CA PRO 71 28.721 63.359 25.673 1.00 30.00 C ATOM 534 C PRO 71 28.868 64.687 26.337 1.00 30.00 C ATOM 535 O PRO 71 27.885 65.422 26.424 1.00 30.00 O ATOM 536 CB PRO 71 28.089 62.295 26.567 1.00 30.00 C ATOM 537 CG PRO 71 28.731 60.982 26.086 1.00 30.00 C ATOM 538 CD PRO 71 30.110 61.408 25.557 1.00 30.00 C ATOM 539 N ASP 72 30.076 64.994 26.839 1.00 30.00 N ATOM 540 CA ASP 72 30.356 66.214 27.532 1.00 30.00 C ATOM 541 C ASP 72 30.310 67.385 26.594 1.00 30.00 C ATOM 542 O ASP 72 30.139 68.521 27.033 1.00 30.00 O ATOM 543 CB ASP 72 31.680 66.164 28.319 1.00 30.00 C ATOM 544 CG ASP 72 32.823 65.819 27.385 1.00 30.00 C ATOM 545 OD1 ASP 72 32.600 65.837 26.147 1.00 30.00 O ATOM 546 OD2 ASP 72 33.938 65.536 27.898 1.00 30.00 O ATOM 547 N CYS 73 30.523 67.180 25.283 1.00 30.00 N ATOM 548 CA CYS 73 30.412 68.326 24.428 1.00 30.00 C ATOM 549 C CYS 73 29.389 68.023 23.388 1.00 30.00 C ATOM 550 O CYS 73 29.655 67.287 22.440 1.00 30.00 O ATOM 551 CB CYS 73 31.718 68.681 23.694 1.00 30.00 C ATOM 552 SG CYS 73 31.530 70.141 22.625 1.00 30.00 S ATOM 553 N ARG 74 28.176 68.593 23.534 1.00 30.00 N ATOM 554 CA ARG 74 27.159 68.335 22.559 1.00 30.00 C ATOM 555 C ARG 74 26.551 69.640 22.189 1.00 30.00 C ATOM 556 O ARG 74 26.438 70.545 23.014 1.00 30.00 O ATOM 557 CB ARG 74 26.032 67.425 23.075 1.00 30.00 C ATOM 558 CG ARG 74 26.481 65.979 23.280 1.00 30.00 C ATOM 559 CD ARG 74 25.385 65.053 23.812 1.00 30.00 C ATOM 560 NE ARG 74 25.939 63.670 23.803 1.00 30.00 N ATOM 561 CZ ARG 74 25.474 62.735 24.680 1.00 30.00 C ATOM 562 NH1 ARG 74 24.511 63.069 25.589 1.00 30.00 H ATOM 563 NH2 ARG 74 25.973 61.464 24.648 1.00 30.00 H ATOM 564 N CYS 75 26.162 69.787 20.911 1.00 30.00 N ATOM 565 CA CYS 75 25.568 71.035 20.568 1.00 30.00 C ATOM 566 C CYS 75 24.181 70.714 20.103 1.00 30.00 C ATOM 567 O CYS 75 23.905 70.646 18.905 1.00 30.00 O ATOM 568 CB CYS 75 26.348 71.759 19.458 1.00 30.00 C ATOM 569 SG CYS 75 28.161 71.738 19.713 1.00 30.00 S ATOM 570 N ASP 76 23.270 70.482 21.070 1.00 30.00 N ATOM 571 CA ASP 76 21.901 70.172 20.776 1.00 30.00 C ATOM 572 C ASP 76 21.076 70.698 21.911 1.00 30.00 C ATOM 573 O ASP 76 21.595 71.332 22.825 1.00 30.00 O ATOM 574 CB ASP 76 21.620 68.663 20.622 1.00 30.00 C ATOM 575 CG ASP 76 21.945 67.951 21.929 1.00 30.00 C ATOM 576 OD1 ASP 76 22.583 68.585 22.810 1.00 30.00 O ATOM 577 OD2 ASP 76 21.566 66.757 22.059 1.00 30.00 O ATOM 578 N ASN 77 19.749 70.490 21.845 1.00 30.00 N ATOM 579 CA ASN 77 18.833 70.942 22.858 1.00 30.00 C ATOM 580 C ASN 77 19.015 70.153 24.128 1.00 30.00 C ATOM 581 O ASN 77 18.900 70.693 25.227 1.00 30.00 O ATOM 582 CB ASN 77 17.366 70.805 22.413 1.00 30.00 C ATOM 583 CG ASN 77 16.491 71.602 23.370 1.00 30.00 C ATOM 584 OD1 ASN 77 16.570 71.469 24.590 1.00 30.00 O ATOM 585 ND2 ASN 77 15.614 72.468 22.796 1.00 30.00 N ATOM 586 N LEU 78 19.336 68.852 24.004 1.00 30.00 N ATOM 587 CA LEU 78 19.456 67.930 25.107 1.00 30.00 C ATOM 588 C LEU 78 20.543 68.390 26.011 1.00 30.00 C ATOM 589 O LEU 78 20.569 68.102 27.205 1.00 30.00 O ATOM 590 CB LEU 78 19.769 66.496 24.654 1.00 30.00 C ATOM 591 CG LEU 78 18.589 65.841 23.912 1.00 30.00 C ATOM 592 CD1 LEU 78 18.226 66.604 22.629 1.00 30.00 C ATOM 593 CD2 LEU 78 18.858 64.350 23.666 1.00 30.00 C ATOM 594 N CYS 79 21.463 69.149 25.428 1.00 30.00 N ATOM 595 CA CYS 79 22.634 69.696 26.020 1.00 30.00 C ATOM 596 C CYS 79 22.232 70.459 27.246 1.00 30.00 C ATOM 597 O CYS 79 22.945 70.448 28.246 1.00 30.00 O ATOM 598 CB CYS 79 23.154 70.664 24.967 1.00 30.00 C ATOM 599 SG CYS 79 24.640 71.544 25.382 1.00 30.00 S ATOM 600 N LYS 80 21.077 71.140 27.221 1.00 30.00 N ATOM 601 CA LYS 80 20.705 71.919 28.365 1.00 30.00 C ATOM 602 C LYS 80 20.582 71.036 29.573 1.00 30.00 C ATOM 603 O LYS 80 21.056 71.389 30.651 1.00 30.00 O ATOM 604 CB LYS 80 19.369 72.649 28.179 1.00 30.00 C ATOM 605 CG LYS 80 19.440 73.765 27.135 1.00 30.00 C ATOM 606 CD LYS 80 18.074 74.328 26.750 1.00 30.00 C ATOM 607 CE LYS 80 18.147 75.536 25.812 1.00 30.00 C ATOM 608 NZ LYS 80 18.170 75.088 24.404 1.00 30.00 N ATOM 609 N SER 81 19.944 69.857 29.435 1.00 30.00 N ATOM 610 CA SER 81 19.746 68.998 30.572 1.00 30.00 C ATOM 611 C SER 81 21.068 68.496 31.070 1.00 30.00 C ATOM 612 O SER 81 21.342 68.510 32.268 1.00 30.00 O ATOM 613 CB SER 81 18.891 67.763 30.242 1.00 30.00 C ATOM 614 OG SER 81 17.583 68.164 29.860 1.00 30.00 O ATOM 615 N TYR 82 21.922 68.050 30.133 1.00 30.00 N ATOM 616 CA TYR 82 23.214 67.474 30.376 1.00 30.00 C ATOM 617 C TYR 82 24.140 68.508 30.934 1.00 30.00 C ATOM 618 O TYR 82 25.072 68.189 31.670 1.00 30.00 O ATOM 619 CB TYR 82 23.859 66.885 29.108 1.00 30.00 C ATOM 620 CG TYR 82 23.007 65.741 28.673 1.00 30.00 C ATOM 621 CD1 TYR 82 23.091 64.523 29.306 1.00 30.00 C ATOM 622 CD2 TYR 82 22.126 65.882 27.626 1.00 30.00 C ATOM 623 CE1 TYR 82 22.305 63.467 28.907 1.00 30.00 C ATOM 624 CE2 TYR 82 21.337 64.830 27.222 1.00 30.00 C ATOM 625 CZ TYR 82 21.427 63.621 27.864 1.00 30.00 C ATOM 626 OH TYR 82 20.619 62.539 27.454 1.00 30.00 H ATOM 627 N SER 83 23.915 69.783 30.575 1.00 30.00 N ATOM 628 CA SER 83 24.786 70.853 30.965 1.00 30.00 C ATOM 629 C SER 83 26.062 70.710 30.212 1.00 30.00 C ATOM 630 O SER 83 27.105 71.205 30.638 1.00 30.00 O ATOM 631 CB SER 83 25.144 70.843 32.463 1.00 30.00 C ATOM 632 OG SER 83 23.989 71.087 33.254 1.00 30.00 O ATOM 633 N SER 84 26.021 70.027 29.056 1.00 30.00 N ATOM 634 CA SER 84 27.237 69.937 28.311 1.00 30.00 C ATOM 635 C SER 84 27.046 70.722 27.055 1.00 30.00 C ATOM 636 O SER 84 27.132 70.186 25.949 1.00 30.00 O ATOM 637 CB SER 84 27.574 68.483 27.953 1.00 30.00 C ATOM 638 OG SER 84 26.576 67.938 27.109 1.00 30.00 O ATOM 639 N CYS 85 26.821 72.043 27.202 1.00 30.00 N ATOM 640 CA CYS 85 26.592 72.855 26.043 1.00 30.00 C ATOM 641 C CYS 85 27.885 73.363 25.529 1.00 30.00 C ATOM 642 O CYS 85 28.808 73.646 26.290 1.00 30.00 O ATOM 643 CB CYS 85 25.629 74.029 26.293 1.00 30.00 C ATOM 644 SG CYS 85 24.000 73.273 26.214 1.00 30.00 S ATOM 645 N CYS 86 27.966 73.466 24.193 1.00 30.00 N ATOM 646 CA CYS 86 29.121 73.955 23.513 1.00 30.00 C ATOM 647 C CYS 86 29.133 75.426 23.799 1.00 30.00 C ATOM 648 O CYS 86 28.078 76.040 23.939 1.00 30.00 O ATOM 649 CB CYS 86 28.972 73.697 21.997 1.00 30.00 C ATOM 650 SG CYS 86 28.506 71.953 21.713 1.00 30.00 S ATOM 651 N HIS 87 30.326 76.037 23.920 1.00 30.00 N ATOM 652 CA HIS 87 30.371 77.425 24.284 1.00 30.00 C ATOM 653 C HIS 87 29.675 78.230 23.231 1.00 30.00 C ATOM 654 O HIS 87 28.804 79.045 23.529 1.00 30.00 O ATOM 655 CB HIS 87 31.806 77.963 24.407 1.00 30.00 C ATOM 656 CG HIS 87 31.858 79.401 24.830 1.00 30.00 C ATOM 657 ND1 HIS 87 31.739 80.460 23.957 1.00 30.00 N ATOM 658 CD2 HIS 87 32.022 79.953 26.064 1.00 30.00 C ATOM 659 CE1 HIS 87 31.839 81.592 24.698 1.00 30.00 C ATOM 660 NE2 HIS 87 32.011 81.334 25.983 1.00 30.00 N ATOM 661 N ASP 88 30.042 77.983 21.962 1.00 30.00 N ATOM 662 CA ASP 88 29.537 78.658 20.803 1.00 30.00 C ATOM 663 C ASP 88 28.117 78.248 20.589 1.00 30.00 C ATOM 664 O ASP 88 27.366 78.906 19.871 1.00 30.00 O ATOM 665 CB ASP 88 30.326 78.311 19.529 1.00 30.00 C ATOM 666 CG ASP 88 31.711 78.924 19.670 1.00 30.00 C ATOM 667 OD1 ASP 88 31.905 79.722 20.626 1.00 30.00 O ATOM 668 OD2 ASP 88 32.592 78.606 18.828 1.00 30.00 O ATOM 669 N PHE 89 27.715 77.130 21.217 1.00 30.00 N ATOM 670 CA PHE 89 26.427 76.550 20.997 1.00 30.00 C ATOM 671 C PHE 89 25.366 77.574 21.214 1.00 30.00 C ATOM 672 O PHE 89 24.464 77.685 20.396 1.00 30.00 O ATOM 673 CB PHE 89 26.147 75.375 21.950 1.00 30.00 C ATOM 674 CG PHE 89 24.783 74.846 21.660 1.00 30.00 C ATOM 675 CD1 PHE 89 24.562 74.004 20.593 1.00 30.00 C ATOM 676 CD2 PHE 89 23.723 75.182 22.468 1.00 30.00 C ATOM 677 CE1 PHE 89 23.300 73.518 20.335 1.00 30.00 C ATOM 678 CE2 PHE 89 22.460 74.698 22.215 1.00 30.00 C ATOM 679 CZ PHE 89 22.246 73.864 21.144 1.00 30.00 C ATOM 680 N ASP 90 25.425 78.372 22.292 1.00 30.00 N ATOM 681 CA ASP 90 24.370 79.321 22.518 1.00 30.00 C ATOM 682 C ASP 90 24.309 80.309 21.390 1.00 30.00 C ATOM 683 O ASP 90 23.234 80.788 21.039 1.00 30.00 O ATOM 684 CB ASP 90 24.536 80.120 23.824 1.00 30.00 C ATOM 685 CG ASP 90 24.182 79.206 24.988 1.00 30.00 C ATOM 686 OD1 ASP 90 23.606 78.114 24.732 1.00 30.00 O ATOM 687 OD2 ASP 90 24.477 79.590 26.151 1.00 30.00 O ATOM 688 N GLU 91 25.441 80.700 20.790 1.00 30.00 N ATOM 689 CA GLU 91 25.306 81.662 19.732 1.00 30.00 C ATOM 690 C GLU 91 24.566 81.048 18.586 1.00 30.00 C ATOM 691 O GLU 91 23.684 81.676 18.005 1.00 30.00 O ATOM 692 CB GLU 91 26.644 82.153 19.145 1.00 30.00 C ATOM 693 CG GLU 91 27.497 82.982 20.105 1.00 30.00 C ATOM 694 CD GLU 91 28.438 82.028 20.826 1.00 30.00 C ATOM 695 OE1 GLU 91 27.952 81.037 21.429 1.00 30.00 O ATOM 696 OE2 GLU 91 29.671 82.278 20.777 1.00 30.00 O ATOM 697 N LEU 92 24.936 79.817 18.194 1.00 30.00 N ATOM 698 CA LEU 92 24.308 79.194 17.062 1.00 30.00 C ATOM 699 C LEU 92 22.911 78.759 17.360 1.00 30.00 C ATOM 700 O LEU 92 21.989 78.962 16.573 1.00 30.00 O ATOM 701 CB LEU 92 25.058 77.948 16.564 1.00 30.00 C ATOM 702 CG LEU 92 26.459 78.245 16.000 1.00 30.00 C ATOM 703 CD1 LEU 92 27.401 78.785 17.085 1.00 30.00 C ATOM 704 CD2 LEU 92 27.037 77.020 15.280 1.00 30.00 C ATOM 705 N CYS 93 22.732 78.138 18.531 1.00 30.00 N ATOM 706 CA CYS 93 21.501 77.541 18.926 1.00 30.00 C ATOM 707 C CYS 93 21.139 78.104 20.230 1.00 30.00 C ATOM 708 O CYS 93 21.299 79.298 20.459 1.00 30.00 O ATOM 709 CB CYS 93 21.571 76.025 19.151 1.00 30.00 C ATOM 710 SG CYS 93 21.805 75.107 17.610 1.00 30.00 S ATOM 711 N LEU 94 20.584 77.245 21.115 1.00 30.00 N ATOM 712 CA LEU 94 19.972 77.778 22.290 1.00 30.00 C ATOM 713 C LEU 94 18.943 78.665 21.670 1.00 30.00 C ATOM 714 O LEU 94 18.614 79.742 22.167 1.00 30.00 O ATOM 715 CB LEU 94 20.930 78.633 23.134 1.00 30.00 C ATOM 716 CG LEU 94 20.292 79.217 24.406 1.00 30.00 C ATOM 717 CD1 LEU 94 19.945 78.111 25.414 1.00 30.00 C ATOM 718 CD2 LEU 94 21.172 80.321 25.010 1.00 30.00 C ATOM 719 N LYS 95 18.412 78.175 20.529 1.00 30.00 N ATOM 720 CA LYS 95 17.595 78.925 19.648 1.00 30.00 C ATOM 721 C LYS 95 18.273 80.215 19.288 1.00 30.00 C ATOM 722 O LYS 95 17.757 81.283 19.602 1.00 30.00 O ATOM 723 CB LYS 95 16.239 79.286 20.261 1.00 30.00 C ATOM 724 CG LYS 95 15.415 78.063 20.641 1.00 30.00 C ATOM 725 CD LYS 95 14.237 78.405 21.552 1.00 30.00 C ATOM 726 CE LYS 95 13.249 77.254 21.720 1.00 30.00 C ATOM 727 NZ LYS 95 13.935 76.089 22.314 1.00 30.00 N TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 58.30 66.7 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 59.36 67.9 56 100.0 56 ARMSMC BURIED . . . . . . . . 55.51 63.6 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 67.61 58.3 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 68.55 57.1 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 73.57 48.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 51.57 81.8 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 69.60 43.5 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 62.84 47.1 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 76.14 33.3 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 37.57 80.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 75.70 44.4 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 62.30 50.0 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 70.32 57.1 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 92.09 0.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 94.25 20.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 94.25 20.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 104.73 0.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 23.13 100.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.13 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.13 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.0534 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 2.21 29 100.0 29 CRMSCA BURIED . . . . . . . . 1.92 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.23 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 2.29 142 100.0 142 CRMSMC BURIED . . . . . . . . 2.09 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 3.82 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 3.70 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 4.13 103 100.0 103 CRMSSC BURIED . . . . . . . . 2.86 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.02 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 3.22 219 100.0 219 CRMSALL BURIED . . . . . . . . 2.40 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 28.301 0.896 0.903 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 28.238 0.892 0.900 29 100.0 29 ERRCA BURIED . . . . . . . . 28.469 0.905 0.911 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 28.244 0.893 0.901 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 28.187 0.889 0.898 142 100.0 142 ERRMC BURIED . . . . . . . . 28.390 0.901 0.908 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 27.053 0.830 0.849 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 27.246 0.841 0.858 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 26.791 0.817 0.838 103 100.0 103 ERRSC BURIED . . . . . . . . 27.729 0.864 0.876 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 27.740 0.866 0.879 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 27.591 0.859 0.872 219 100.0 219 ERRALL BURIED . . . . . . . . 28.130 0.887 0.895 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 12 27 33 39 40 40 40 DISTCA CA (P) 30.00 67.50 82.50 97.50 100.00 40 DISTCA CA (RMS) 0.58 1.01 1.36 2.00 2.13 DISTCA ALL (N) 69 184 230 273 300 303 303 DISTALL ALL (P) 22.77 60.73 75.91 90.10 99.01 303 DISTALL ALL (RMS) 0.66 1.17 1.50 2.07 2.77 DISTALL END of the results output