####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS360_1_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS360_1_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 56 - 95 2.39 2.39 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 26 69 - 94 1.88 2.53 LCS_AVERAGE: 51.19 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 72 - 87 0.98 3.07 LCS_AVERAGE: 27.44 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 7 10 40 3 7 21 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 57 S 57 7 10 40 3 18 22 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 58 C 58 7 10 40 9 18 22 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 59 K 59 7 10 40 11 18 22 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT G 60 G 60 7 10 40 3 4 8 17 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT R 61 R 61 7 10 40 11 17 22 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 62 C 62 7 10 40 3 13 22 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT F 63 F 63 4 10 40 3 5 6 6 32 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 64 E 64 4 10 40 3 5 8 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 65 L 65 4 10 40 4 4 21 26 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT Q 66 Q 66 4 6 40 4 4 5 10 12 25 32 34 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 67 E 67 4 6 40 4 4 11 27 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT V 68 V 68 4 6 40 4 4 18 25 30 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT G 69 G 69 3 26 40 1 3 8 15 31 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT P 70 P 70 3 26 40 1 3 6 12 16 19 28 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT P 71 P 71 3 26 40 2 3 4 5 14 20 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 72 D 72 16 26 40 5 13 21 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 73 C 73 16 26 40 10 18 22 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT R 74 R 74 16 26 40 4 18 22 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 75 C 75 16 26 40 11 18 22 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 76 D 76 16 26 40 4 15 22 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT N 77 N 77 16 26 40 4 15 22 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 78 L 78 16 26 40 9 18 22 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 79 C 79 16 26 40 6 18 22 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 80 K 80 16 26 40 4 10 16 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 81 S 81 16 26 40 4 13 21 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT Y 82 Y 82 16 26 40 5 13 21 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 83 S 83 16 26 40 5 13 21 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 84 S 84 16 26 40 6 17 22 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 85 C 85 16 26 40 11 18 22 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 86 C 86 16 26 40 11 18 22 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT H 87 H 87 16 26 40 4 18 22 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 88 D 88 14 26 40 11 18 22 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT F 89 F 89 14 26 40 11 18 22 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 90 D 90 14 26 40 11 18 22 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 91 E 91 14 26 40 11 18 22 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 92 L 92 14 26 40 11 18 22 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 93 C 93 14 26 40 11 18 22 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 94 L 94 14 26 40 11 18 22 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 95 K 95 3 25 40 3 3 6 7 11 16 19 30 36 37 40 40 40 40 40 40 40 40 40 40 LCS_AVERAGE LCS_A: 59.54 ( 27.44 51.19 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 18 22 30 33 35 36 37 38 39 40 40 40 40 40 40 40 40 40 40 GDT PERCENT_AT 27.50 45.00 55.00 75.00 82.50 87.50 90.00 92.50 95.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.31 0.66 0.87 1.38 1.52 1.63 1.70 1.85 2.02 2.21 2.39 2.39 2.39 2.39 2.39 2.39 2.39 2.39 2.39 2.39 GDT RMS_ALL_AT 3.10 2.75 2.69 2.46 2.44 2.46 2.44 2.42 2.43 2.40 2.39 2.39 2.39 2.39 2.39 2.39 2.39 2.39 2.39 2.39 # Checking swapping # possible swapping detected: E 64 E 64 # possible swapping detected: Y 82 Y 82 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 1.845 0 0.498 0.498 2.020 72.976 72.976 LGA S 57 S 57 1.260 0 0.170 0.730 3.210 81.429 76.190 LGA C 58 C 58 1.303 0 0.546 0.473 3.026 73.571 76.190 LGA K 59 K 59 1.124 0 0.654 0.997 7.200 75.357 49.630 LGA G 60 G 60 2.614 0 0.110 0.110 2.614 60.952 60.952 LGA R 61 R 61 1.660 0 0.079 1.014 3.027 72.857 69.351 LGA C 62 C 62 1.976 0 0.650 0.957 2.851 71.071 67.698 LGA F 63 F 63 2.590 0 0.338 0.504 6.342 71.071 44.329 LGA E 64 E 64 1.941 0 0.548 1.101 5.176 69.048 53.016 LGA L 65 L 65 2.468 0 0.663 1.268 7.077 58.333 45.238 LGA Q 66 Q 66 5.369 0 0.054 1.047 11.324 43.095 20.476 LGA E 67 E 67 2.611 0 0.113 1.270 8.142 52.143 30.688 LGA V 68 V 68 3.196 0 0.615 0.921 7.610 65.119 43.197 LGA G 69 G 69 2.972 0 0.470 0.470 2.972 57.143 57.143 LGA P 70 P 70 6.040 0 0.729 0.680 9.520 22.976 15.306 LGA P 71 P 71 4.675 0 0.340 0.316 5.856 48.214 37.415 LGA D 72 D 72 2.147 3 0.574 0.546 4.027 54.048 32.440 LGA C 73 C 73 1.187 0 0.202 0.192 1.259 81.429 82.937 LGA R 74 R 74 1.164 0 0.074 1.264 5.620 85.952 71.082 LGA C 75 C 75 1.269 0 0.482 0.777 2.211 83.690 80.159 LGA D 76 D 76 1.695 0 0.090 1.193 4.922 72.857 63.750 LGA N 77 N 77 1.921 0 0.108 0.272 3.445 77.143 68.155 LGA L 78 L 78 0.289 0 0.106 1.286 5.369 97.619 76.548 LGA C 79 C 79 1.116 0 0.060 0.702 2.299 88.214 83.175 LGA K 80 K 80 1.950 0 0.029 0.957 10.712 72.976 43.122 LGA S 81 S 81 2.178 0 0.082 0.078 2.409 66.786 66.111 LGA Y 82 Y 82 1.990 0 0.148 0.181 3.371 72.857 64.365 LGA S 83 S 83 1.602 0 0.176 0.743 3.747 81.667 72.460 LGA S 84 S 84 0.249 0 0.445 0.656 2.499 90.833 86.429 LGA C 85 C 85 0.818 0 0.041 0.115 1.385 90.476 87.460 LGA C 86 C 86 1.229 0 0.070 0.119 1.233 81.429 81.429 LGA H 87 H 87 1.531 0 0.059 0.979 8.210 79.286 47.429 LGA D 88 D 88 0.285 0 0.163 1.150 3.589 97.619 85.893 LGA F 89 F 89 0.292 0 0.106 0.273 0.714 100.000 96.537 LGA D 90 D 90 1.095 0 0.032 0.598 2.262 81.548 75.179 LGA E 91 E 91 1.199 0 0.087 1.134 4.858 79.286 65.132 LGA L 92 L 92 1.050 0 0.198 0.858 3.920 90.595 74.286 LGA C 93 C 93 0.386 0 0.597 0.510 2.885 84.524 82.222 LGA L 94 L 94 0.764 0 0.299 1.408 6.580 71.667 51.607 LGA K 95 K 95 6.440 0 0.237 0.997 13.275 19.405 8.942 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 2.388 2.269 3.723 72.432 61.666 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 37 1.85 78.125 75.110 1.896 LGA_LOCAL RMSD: 1.852 Number of atoms: 37 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.417 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 2.388 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.192128 * X + -0.557329 * Y + 0.807757 * Z + 27.527554 Y_new = -0.512856 * X + -0.758774 * Y + -0.401547 * Z + 61.195652 Z_new = 0.836699 * X + -0.337115 * Y + -0.431612 * Z + 11.639522 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.212355 -0.991228 -2.478508 [DEG: -69.4628 -56.7932 -142.0080 ] ZXZ: 1.109460 2.017075 1.953809 [DEG: 63.5674 115.5699 111.9450 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS360_1_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS360_1_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 37 1.85 75.110 2.39 REMARK ---------------------------------------------------------- MOLECULE T0543TS360_1_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 1 REMARK PFRMAT TS REMARK TARGET T0543 REMARK PARENT 2jq8_A ATOM 422 N GLY 56 36.508 72.029 18.723 1.00185.51 4 ATOM 423 CA GLY 56 35.403 72.055 17.813 1.00185.51 4 ATOM 424 C GLY 56 34.351 72.981 18.328 1.00185.51 4 ATOM 425 O GLY 56 33.836 72.816 19.430 1.00185.51 4 ATOM 426 N SER 57 33.995 73.976 17.497 1.00130.47 4 ATOM 427 CA SER 57 32.990 74.951 17.809 1.00130.47 4 ATOM 428 CB SER 57 33.145 76.232 16.978 1.00130.47 4 ATOM 429 OG SER 57 34.417 76.814 17.209 1.00130.47 4 ATOM 430 C SER 57 31.677 74.362 17.406 1.00130.47 4 ATOM 431 O SER 57 31.644 73.317 16.758 1.00130.47 4 ATOM 432 N CYS 58 30.555 75.006 17.800 1.00141.08 4 ATOM 433 CA CYS 58 29.280 74.523 17.350 1.00141.08 4 ATOM 434 CB CYS 58 28.116 74.621 18.348 1.00141.08 4 ATOM 435 SG CYS 58 28.072 73.148 19.404 1.00141.08 4 ATOM 436 C CYS 58 28.896 75.246 16.105 1.00141.08 4 ATOM 437 O CYS 58 28.678 76.458 16.092 1.00141.08 4 ATOM 438 N LYS 59 28.956 74.477 15.004 1.00224.64 4 ATOM 439 CA LYS 59 28.660 74.814 13.641 1.00224.64 4 ATOM 440 CB LYS 59 29.516 73.997 12.667 1.00224.64 4 ATOM 441 CG LYS 59 31.004 74.209 12.928 1.00224.64 4 ATOM 442 CD LYS 59 31.897 73.152 12.289 1.00224.64 4 ATOM 443 CE LYS 59 33.332 73.174 12.813 1.00224.64 4 ATOM 444 NZ LYS 59 34.055 74.340 12.260 1.00224.64 4 ATOM 445 C LYS 59 27.234 74.668 13.192 1.00224.64 4 ATOM 446 O LYS 59 26.796 75.378 12.289 1.00224.64 4 ATOM 447 N GLY 60 26.433 73.786 13.808 1.00218.75 4 ATOM 448 CA GLY 60 25.209 73.407 13.145 1.00218.75 4 ATOM 449 C GLY 60 25.016 71.968 13.492 1.00218.75 4 ATOM 450 O GLY 60 24.192 71.250 12.927 1.00218.75 4 ATOM 451 N ARG 61 25.839 71.553 14.464 1.00304.38 4 ATOM 452 CA ARG 61 25.919 70.295 15.142 1.00304.38 4 ATOM 453 CB ARG 61 27.132 70.212 16.080 1.00304.38 4 ATOM 454 CG ARG 61 28.486 70.296 15.383 1.00304.38 4 ATOM 455 CD ARG 61 29.637 70.474 16.374 1.00304.38 4 ATOM 456 NE ARG 61 29.621 69.298 17.287 1.00304.38 4 ATOM 457 CZ ARG 61 30.439 69.283 18.379 1.00304.38 4 ATOM 458 NH1 ARG 61 31.238 70.359 18.644 1.00304.38 4 ATOM 459 NH2 ARG 61 30.461 68.192 19.199 1.00304.38 4 ATOM 460 C ARG 61 24.714 70.178 16.032 1.00304.38 4 ATOM 461 O ARG 61 24.647 69.285 16.873 1.00304.38 4 ATOM 462 N CYS 62 23.890 71.238 16.094 1.00184.67 4 ATOM 463 CA CYS 62 22.697 71.195 16.902 1.00184.67 4 ATOM 464 CB CYS 62 22.196 72.557 17.376 1.00184.67 4 ATOM 465 SG CYS 62 21.222 73.379 16.104 1.00184.67 4 ATOM 466 C CYS 62 21.519 70.510 16.260 1.00184.67 4 ATOM 467 O CYS 62 20.595 70.109 16.964 1.00184.67 4 ATOM 468 N PHE 63 21.414 70.503 14.918 1.00143.19 4 ATOM 469 CA PHE 63 20.245 69.909 14.320 1.00143.19 4 ATOM 470 CB PHE 63 19.936 70.441 12.910 1.00143.19 4 ATOM 471 CG PHE 63 19.373 71.808 13.122 1.00143.19 4 ATOM 472 CD1 PHE 63 18.022 71.974 13.333 1.00143.19 4 ATOM 473 CD2 PHE 63 20.188 72.915 13.129 1.00143.19 4 ATOM 474 CE1 PHE 63 17.491 73.225 13.539 1.00143.19 4 ATOM 475 CE2 PHE 63 19.662 74.168 13.333 1.00143.19 4 ATOM 476 CZ PHE 63 18.313 74.326 13.538 1.00143.19 4 ATOM 477 C PHE 63 20.241 68.410 14.294 1.00143.19 4 ATOM 478 O PHE 63 19.223 67.785 14.598 1.00143.19 4 ATOM 479 N GLU 64 21.375 67.789 13.927 1.00143.84 4 ATOM 480 CA GLU 64 21.386 66.369 13.743 1.00143.84 4 ATOM 481 CB GLU 64 22.768 65.852 13.329 1.00143.84 4 ATOM 482 CG GLU 64 23.334 66.571 12.109 1.00143.84 4 ATOM 483 CD GLU 64 24.244 67.697 12.594 1.00143.84 4 ATOM 484 OE1 GLU 64 23.787 68.595 13.351 1.00143.84 4 ATOM 485 OE2 GLU 64 25.438 67.661 12.199 1.00143.84 4 ATOM 486 C GLU 64 21.071 65.691 15.032 1.00143.84 4 ATOM 487 O GLU 64 20.093 64.951 15.114 1.00143.84 4 ATOM 488 N LEU 65 21.871 65.950 16.086 1.00208.03 4 ATOM 489 CA LEU 65 21.627 65.292 17.335 1.00208.03 4 ATOM 490 CB LEU 65 21.410 63.774 17.205 1.00208.03 4 ATOM 491 CG LEU 65 22.488 63.039 16.386 1.00208.03 4 ATOM 492 CD1 LEU 65 23.840 62.982 17.115 1.00208.03 4 ATOM 493 CD2 LEU 65 21.988 61.658 15.936 1.00208.03 4 ATOM 494 C LEU 65 22.809 65.514 18.211 1.00208.03 4 ATOM 495 O LEU 65 23.809 66.085 17.786 1.00208.03 4 ATOM 496 N GLN 66 22.717 65.046 19.471 1.00106.97 4 ATOM 497 CA GLN 66 23.780 65.254 20.406 1.00106.97 4 ATOM 498 CB GLN 66 23.402 64.830 21.834 1.00106.97 4 ATOM 499 CG GLN 66 24.440 65.199 22.889 1.00106.97 5 ATOM 500 CD GLN 66 24.267 66.687 23.157 1.00106.97 5 ATOM 501 OE1 GLN 66 24.571 67.517 22.304 1.00106.97 5 ATOM 502 NE2 GLN 66 23.779 67.031 24.379 1.00106.97 5 ATOM 503 C GLN 66 24.941 64.408 20.004 1.00106.97 5 ATOM 504 O GLN 66 24.790 63.211 19.766 1.00106.97 5 ATOM 505 N GLU 67 26.142 65.018 19.911 1.00153.09 5 ATOM 506 CA GLU 67 27.290 64.214 19.626 1.00153.09 5 ATOM 507 CB GLU 67 28.373 64.936 18.810 1.00153.09 5 ATOM 508 CG GLU 67 27.945 65.204 17.365 1.00153.09 5 ATOM 509 CD GLU 67 27.775 63.871 16.647 1.00153.09 5 ATOM 510 OE1 GLU 67 28.409 62.874 17.083 1.00153.09 5 ATOM 511 OE2 GLU 67 27.009 63.833 15.647 1.00153.09 5 ATOM 512 C GLU 67 27.846 63.854 20.960 1.00153.09 5 ATOM 513 O GLU 67 28.680 64.562 21.527 1.00153.09 5 ATOM 514 N VAL 68 27.322 62.743 21.504 1.00112.34 5 ATOM 515 CA VAL 68 27.742 62.201 22.755 1.00112.34 5 ATOM 516 CB VAL 68 26.794 61.158 23.277 1.00112.34 5 ATOM 517 CG1 VAL 68 25.470 61.862 23.619 1.00112.34 5 ATOM 518 CG2 VAL 68 26.622 60.066 22.211 1.00112.34 5 ATOM 519 C VAL 68 29.109 61.632 22.576 1.00112.34 5 ATOM 520 O VAL 68 29.910 61.610 23.508 1.00112.34 5 ATOM 521 N GLY 69 29.388 61.067 21.390 1.00 51.67 5 ATOM 522 CA GLY 69 30.713 60.578 21.152 1.00 51.67 5 ATOM 523 C GLY 69 31.675 61.722 21.024 1.00 51.67 5 ATOM 524 O GLY 69 32.751 61.732 21.622 1.00 51.67 5 ATOM 525 N PRO 70 31.288 62.679 20.226 1.00267.66 5 ATOM 526 CA PRO 70 32.152 63.804 19.959 1.00267.66 5 ATOM 527 CD PRO 70 30.569 62.281 19.024 1.00267.66 5 ATOM 528 CB PRO 70 31.719 64.354 18.597 1.00267.66 5 ATOM 529 CG PRO 70 31.122 63.139 17.877 1.00267.66 5 ATOM 530 C PRO 70 32.328 64.912 20.945 1.00267.66 5 ATOM 531 O PRO 70 33.265 65.665 20.707 1.00267.66 5 ATOM 532 N PRO 71 31.548 65.110 21.967 1.00206.41 5 ATOM 533 CA PRO 71 31.646 66.343 22.679 1.00206.41 5 ATOM 534 CD PRO 71 31.145 64.045 22.862 1.00206.41 5 ATOM 535 CB PRO 71 30.716 66.191 23.870 1.00206.41 5 ATOM 536 CG PRO 71 30.927 64.712 24.230 1.00206.41 5 ATOM 537 C PRO 71 32.984 66.734 23.204 1.00206.41 5 ATOM 538 O PRO 71 33.307 66.328 24.320 1.00206.41 5 ATOM 539 N ASP 72 33.756 67.542 22.451 1.00111.59 5 ATOM 540 CA ASP 72 34.845 68.213 23.078 1.00111.59 5 ATOM 541 CB ASP 72 35.650 69.067 22.092 1.00111.59 5 ATOM 542 CG ASP 72 36.210 68.099 21.066 1.00111.59 5 ATOM 543 OD1 ASP 72 36.038 66.867 21.271 1.00111.59 5 ATOM 544 OD2 ASP 72 36.799 68.576 20.060 1.00111.59 5 ATOM 545 C ASP 72 34.004 69.125 23.882 1.00111.59 5 ATOM 546 O ASP 72 34.242 69.429 25.049 1.00111.59 5 ATOM 547 N CYS 73 32.951 69.549 23.158 1.00168.00 5 ATOM 548 CA CYS 73 31.779 70.227 23.587 1.00168.00 5 ATOM 549 CB CYS 73 31.906 71.760 23.668 1.00168.00 5 ATOM 550 SG CYS 73 32.066 72.566 22.060 1.00168.00 5 ATOM 551 C CYS 73 30.776 69.809 22.548 1.00168.00 5 ATOM 552 O CYS 73 31.137 69.487 21.416 1.00168.00 5 ATOM 553 N ARG 74 29.485 69.750 22.912 1.00167.73 5 ATOM 554 CA ARG 74 28.505 69.270 21.983 1.00167.73 5 ATOM 555 CB ARG 74 27.981 67.866 22.348 1.00167.73 5 ATOM 556 CG ARG 74 27.290 67.777 23.715 1.00167.73 5 ATOM 557 CD ARG 74 26.996 66.341 24.175 1.00167.73 5 ATOM 558 NE ARG 74 27.855 66.022 25.347 1.00167.73 5 ATOM 559 CZ ARG 74 27.754 64.803 25.955 1.00167.73 5 ATOM 560 NH1 ARG 74 26.924 63.848 25.442 1.00167.73 5 ATOM 561 NH2 ARG 74 28.485 64.536 27.077 1.00167.73 5 ATOM 562 C ARG 74 27.345 70.210 22.026 1.00167.73 5 ATOM 563 O ARG 74 27.268 71.071 22.899 1.00167.73 5 ATOM 564 N CYS 75 26.429 70.118 21.040 1.00171.19 5 ATOM 565 CA CYS 75 25.269 70.958 21.136 1.00171.19 5 ATOM 566 CB CYS 75 25.384 72.276 20.349 1.00171.19 5 ATOM 567 SG CYS 75 26.392 72.157 18.849 1.00171.19 5 ATOM 568 C CYS 75 24.036 70.217 20.715 1.00171.19 5 ATOM 569 O CYS 75 23.936 69.700 19.605 1.00171.19 5 ATOM 570 N ASP 76 23.054 70.124 21.633 1.00108.12 5 ATOM 571 CA ASP 76 21.807 69.493 21.308 1.00108.12 5 ATOM 572 CB ASP 76 21.839 67.957 21.454 1.00108.12 5 ATOM 573 CG ASP 76 20.646 67.376 20.707 1.00108.12 5 ATOM 574 OD1 ASP 76 20.296 67.947 19.640 1.00108.12 5 ATOM 575 OD2 ASP 76 20.060 66.375 21.197 1.00108.12 5 ATOM 576 C ASP 76 20.778 70.032 22.258 1.00108.12 5 ATOM 577 O ASP 76 21.052 70.925 23.059 1.00108.12 5 ATOM 578 N ASN 77 19.531 69.540 22.139 1.00 92.87 5 ATOM 579 CA ASN 77 18.478 69.882 23.053 1.00 92.87 5 ATOM 580 CB ASN 77 17.114 69.303 22.633 1.00 92.87 5 ATOM 581 CG ASN 77 16.658 69.960 21.338 1.00 92.87 5 ATOM 582 OD1 ASN 77 17.475 70.317 20.490 1.00 92.87 5 ATOM 583 ND2 ASN 77 15.317 70.127 21.177 1.00 92.87 5 ATOM 584 C ASN 77 18.851 69.234 24.356 1.00 92.87 5 ATOM 585 O ASN 77 18.556 69.738 25.437 1.00 92.87 5 ATOM 586 N LEU 78 19.529 68.075 24.228 1.00109.54 5 ATOM 587 CA LEU 78 20.012 67.176 25.243 1.00109.54 5 ATOM 588 CB LEU 78 20.646 65.897 24.661 1.00109.54 5 ATOM 589 CG LEU 78 19.660 64.966 23.929 1.00109.54 5 ATOM 590 CD1 LEU 78 20.377 63.718 23.383 1.00109.54 5 ATOM 591 CD2 LEU 78 18.472 64.594 24.831 1.00109.54 5 ATOM 592 C LEU 78 21.074 67.871 26.029 1.00109.54 5 ATOM 593 O LEU 78 21.506 67.402 27.075 1.00109.54 5 ATOM 594 N CYS 79 21.539 69.011 25.514 1.00101.18 5 ATOM 595 CA CYS 79 22.651 69.761 26.005 1.00101.18 5 ATOM 596 CB CYS 79 22.631 71.110 25.290 1.00101.18 5 ATOM 597 SG CYS 79 24.261 71.798 25.012 1.00101.18 5 ATOM 598 C CYS 79 22.472 69.983 27.479 1.00101.18 5 ATOM 599 O CYS 79 23.424 69.843 28.247 1.00101.18 6 ATOM 600 N LYS 80 21.248 70.347 27.910 1.00116.39 6 ATOM 601 CA LYS 80 20.976 70.546 29.307 1.00116.39 6 ATOM 602 CB LYS 80 19.558 71.078 29.596 1.00116.39 6 ATOM 603 CG LYS 80 18.463 70.012 29.483 1.00116.39 6 ATOM 604 CD LYS 80 17.145 70.413 30.152 1.00116.39 6 ATOM 605 CE LYS 80 16.071 69.316 30.156 1.00116.39 6 ATOM 606 NZ LYS 80 16.372 68.312 31.201 1.00116.39 6 ATOM 607 C LYS 80 21.079 69.230 30.027 1.00116.39 6 ATOM 608 O LYS 80 21.595 69.156 31.140 1.00116.39 6 ATOM 609 N SER 81 20.578 68.143 29.410 1.00 81.38 6 ATOM 610 CA SER 81 20.569 66.868 30.073 1.00 81.38 6 ATOM 611 CB SER 81 19.981 65.736 29.208 1.00 81.38 6 ATOM 612 OG SER 81 18.585 65.926 29.022 1.00 81.38 6 ATOM 613 C SER 81 21.965 66.472 30.442 1.00 81.38 6 ATOM 614 O SER 81 22.258 66.216 31.610 1.00 81.38 6 ATOM 615 N TYR 82 22.853 66.403 29.434 1.00 68.04 6 ATOM 616 CA TYR 82 24.230 66.034 29.593 1.00 68.04 6 ATOM 617 CB TYR 82 24.945 65.801 28.248 1.00 68.04 6 ATOM 618 CG TYR 82 24.335 64.592 27.613 1.00 68.04 6 ATOM 619 CD1 TYR 82 24.730 63.325 27.988 1.00 68.04 6 ATOM 620 CD2 TYR 82 23.368 64.718 26.643 1.00 68.04 6 ATOM 621 CE1 TYR 82 24.172 62.207 27.405 1.00 68.04 6 ATOM 622 CE2 TYR 82 22.806 63.606 26.057 1.00 68.04 6 ATOM 623 CZ TYR 82 23.208 62.349 26.435 1.00 68.04 6 ATOM 624 OH TYR 82 22.630 61.214 25.828 1.00 68.04 6 ATOM 625 C TYR 82 24.947 67.116 30.337 1.00 68.04 6 ATOM 626 O TYR 82 25.866 66.834 31.105 1.00 68.04 6 ATOM 627 N SER 83 24.519 68.380 30.127 1.00120.01 6 ATOM 628 CA SER 83 25.117 69.584 30.642 1.00120.01 6 ATOM 629 CB SER 83 25.240 69.676 32.179 1.00120.01 6 ATOM 630 OG SER 83 26.252 68.817 32.685 1.00120.01 6 ATOM 631 C SER 83 26.460 69.763 30.021 1.00120.01 6 ATOM 632 O SER 83 27.394 70.254 30.655 1.00120.01 6 ATOM 633 N SER 84 26.571 69.351 28.740 1.00 85.32 6 ATOM 634 CA SER 84 27.770 69.544 27.986 1.00 85.32 6 ATOM 635 CB SER 84 28.366 68.214 27.506 1.00 85.32 6 ATOM 636 OG SER 84 28.585 67.353 28.614 1.00 85.32 6 ATOM 637 C SER 84 27.373 70.322 26.762 1.00 85.32 6 ATOM 638 O SER 84 26.905 69.752 25.778 1.00 85.32 6 ATOM 639 N CYS 85 27.576 71.653 26.792 1.00135.32 6 ATOM 640 CA CYS 85 27.217 72.547 25.724 1.00135.32 6 ATOM 641 CB CYS 85 26.183 73.605 26.152 1.00135.32 6 ATOM 642 SG CYS 85 24.619 72.877 26.665 1.00135.32 6 ATOM 643 C CYS 85 28.419 73.389 25.449 1.00135.32 6 ATOM 644 O CYS 85 29.249 73.591 26.333 1.00135.32 6 ATOM 645 N CYS 86 28.545 73.900 24.207 1.00112.26 6 ATOM 646 CA CYS 86 29.620 74.796 23.884 1.00112.26 6 ATOM 647 CB CYS 86 29.972 74.787 22.386 1.00112.26 6 ATOM 648 SG CYS 86 30.159 73.115 21.687 1.00112.26 6 ATOM 649 C CYS 86 29.111 76.174 24.207 1.00112.26 6 ATOM 650 O CYS 86 27.909 76.369 24.390 1.00112.26 6 ATOM 651 N HIS 87 30.010 77.171 24.314 1.00115.73 6 ATOM 652 CA HIS 87 29.575 78.517 24.583 1.00115.73 6 ATOM 653 ND1 HIS 87 32.275 78.705 26.700 1.00115.73 6 ATOM 654 CG HIS 87 31.221 79.472 26.260 1.00115.73 6 ATOM 655 CB HIS 87 30.721 79.512 24.847 1.00115.73 6 ATOM 656 NE2 HIS 87 31.513 79.813 28.472 1.00115.73 6 ATOM 657 CD2 HIS 87 30.766 80.142 27.355 1.00115.73 6 ATOM 658 CE1 HIS 87 32.407 78.947 28.030 1.00115.73 6 ATOM 659 C HIS 87 28.807 79.018 23.404 1.00115.73 6 ATOM 660 O HIS 87 27.859 79.791 23.540 1.00115.73 6 ATOM 661 N ASP 88 29.239 78.582 22.215 1.00185.70 6 ATOM 662 CA ASP 88 28.719 78.954 20.934 1.00185.70 6 ATOM 663 CB ASP 88 29.604 78.443 19.792 1.00185.70 6 ATOM 664 CG ASP 88 29.260 79.296 18.596 1.00185.70 6 ATOM 665 OD1 ASP 88 28.435 80.230 18.771 1.00185.70 6 ATOM 666 OD2 ASP 88 29.821 79.039 17.498 1.00185.70 6 ATOM 667 C ASP 88 27.344 78.383 20.737 1.00185.70 6 ATOM 668 O ASP 88 26.643 78.761 19.803 1.00185.70 6 ATOM 669 N PHE 89 26.937 77.412 21.575 1.00118.13 6 ATOM 670 CA PHE 89 25.673 76.741 21.398 1.00118.13 6 ATOM 671 CB PHE 89 25.421 75.659 22.460 1.00118.13 6 ATOM 672 CG PHE 89 23.999 75.232 22.355 1.00118.13 6 ATOM 673 CD1 PHE 89 23.564 74.455 21.307 1.00118.13 6 ATOM 674 CD2 PHE 89 23.102 75.611 23.326 1.00118.13 6 ATOM 675 CE1 PHE 89 22.249 74.066 21.228 1.00118.13 6 ATOM 676 CE2 PHE 89 21.787 75.223 23.251 1.00118.13 6 ATOM 677 CZ PHE 89 21.357 74.452 22.198 1.00118.13 6 ATOM 678 C PHE 89 24.523 77.692 21.417 1.00118.13 6 ATOM 679 O PHE 89 23.615 77.597 20.591 1.00118.13 6 ATOM 680 N ASP 90 24.492 78.635 22.363 1.00 68.11 6 ATOM 681 CA ASP 90 23.345 79.488 22.346 1.00 68.11 6 ATOM 682 CB ASP 90 23.290 80.454 23.540 1.00 68.11 6 ATOM 683 CG ASP 90 23.051 79.594 24.771 1.00 68.11 6 ATOM 684 OD1 ASP 90 23.091 78.344 24.613 1.00 68.11 6 ATOM 685 OD2 ASP 90 22.827 80.161 25.874 1.00 68.11 6 ATOM 686 C ASP 90 23.357 80.294 21.086 1.00 68.11 6 ATOM 687 O ASP 90 22.329 80.435 20.424 1.00 68.11 6 ATOM 688 N GLU 91 24.535 80.832 20.712 1.00120.60 6 ATOM 689 CA GLU 91 24.602 81.694 19.570 1.00120.60 6 ATOM 690 CB GLU 91 25.978 82.385 19.440 1.00120.60 6 ATOM 691 CG GLU 91 26.071 83.448 18.338 1.00120.60 6 ATOM 692 CD GLU 91 26.683 82.820 17.092 1.00120.60 6 ATOM 693 OE1 GLU 91 26.622 81.569 16.952 1.00120.60 6 ATOM 694 OE2 GLU 91 27.227 83.593 16.261 1.00120.60 6 ATOM 695 C GLU 91 24.295 80.943 18.306 1.00120.60 6 ATOM 696 O GLU 91 23.448 81.374 17.525 1.00120.60 6 ATOM 697 N LEU 92 24.957 79.793 18.072 1.00169.62 6 ATOM 698 CA LEU 92 24.759 79.089 16.836 1.00169.62 6 ATOM 699 CB LEU 92 25.767 77.930 16.656 1.00169.62 7 ATOM 700 CG LEU 92 25.749 77.268 15.258 1.00169.62 7 ATOM 701 CD1 LEU 92 24.451 76.503 14.964 1.00169.62 7 ATOM 702 CD2 LEU 92 26.066 78.302 14.170 1.00169.62 7 ATOM 703 C LEU 92 23.369 78.538 16.806 1.00169.62 7 ATOM 704 O LEU 92 22.628 78.746 15.845 1.00169.62 7 ATOM 705 N CYS 93 22.966 77.821 17.878 1.00312.10 7 ATOM 706 CA CYS 93 21.629 77.310 17.892 1.00312.10 7 ATOM 707 CB CYS 93 21.542 75.783 17.873 1.00312.10 7 ATOM 708 SG CYS 93 21.981 75.237 16.202 1.00312.10 7 ATOM 709 C CYS 93 20.929 77.875 19.074 1.00312.10 7 ATOM 710 O CYS 93 21.114 77.458 20.215 1.00312.10 7 ATOM 711 N LEU 94 20.063 78.855 18.806 1.00292.73 7 ATOM 712 CA LEU 94 19.405 79.529 19.872 1.00292.73 7 ATOM 713 CB LEU 94 19.011 80.962 19.449 1.00292.73 7 ATOM 714 CG LEU 94 18.304 81.805 20.527 1.00292.73 7 ATOM 715 CD1 LEU 94 19.254 82.118 21.691 1.00292.73 7 ATOM 716 CD2 LEU 94 17.686 83.078 19.926 1.00292.73 7 ATOM 717 C LEU 94 18.171 78.750 20.187 1.00292.73 7 ATOM 718 O LEU 94 17.127 78.946 19.564 1.00292.73 7 ATOM 719 N LYS 95 18.267 77.826 21.164 1.00285.54 7 ATOM 720 CA LYS 95 17.089 77.128 21.578 1.00285.54 7 ATOM 721 CB LYS 95 17.291 75.622 21.835 1.00285.54 7 ATOM 722 CG LYS 95 16.002 74.915 22.267 1.00285.54 7 ATOM 723 CD LYS 95 16.028 73.399 22.067 1.00285.54 7 ATOM 724 CE LYS 95 15.387 72.967 20.749 1.00285.54 7 ATOM 725 NZ LYS 95 15.967 73.757 19.643 1.00285.54 7 ATOM 726 C LYS 95 16.685 77.794 22.853 1.00285.54 7 ATOM 727 O LYS 95 16.970 77.323 23.949 1.00285.54 7 TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 66.56 60.3 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 66.84 60.7 56 100.0 56 ARMSMC BURIED . . . . . . . . 65.85 59.1 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 92.42 44.4 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 92.09 45.7 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 88.90 48.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 99.97 36.4 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 93.76 39.1 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 79.38 47.1 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 102.36 33.3 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 52.17 60.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 62.38 33.3 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 48.88 37.5 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 65.02 42.9 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 52.08 0.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 98.08 40.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 98.08 40.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 109.64 25.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 2.60 100.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.39 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.39 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.0597 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 2.62 29 100.0 29 CRMSCA BURIED . . . . . . . . 1.61 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.54 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 2.78 142 100.0 142 CRMSMC BURIED . . . . . . . . 1.76 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 4.92 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 4.63 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 5.48 103 100.0 103 CRMSSC BURIED . . . . . . . . 3.04 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.76 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 4.17 219 100.0 219 CRMSALL BURIED . . . . . . . . 2.38 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 152.999 0.971 0.972 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 153.856 0.968 0.969 29 100.0 29 ERRCA BURIED . . . . . . . . 150.740 0.979 0.979 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 152.967 0.971 0.971 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 153.861 0.968 0.968 142 100.0 142 ERRMC BURIED . . . . . . . . 150.659 0.978 0.978 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 152.782 0.945 0.947 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 154.484 0.950 0.952 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 155.688 0.938 0.940 103 100.0 103 ERRSC BURIED . . . . . . . . 145.300 0.965 0.966 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 152.938 0.960 0.961 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 154.768 0.955 0.956 219 100.0 219 ERRALL BURIED . . . . . . . . 148.167 0.973 0.974 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 6 29 35 37 40 40 40 DISTCA CA (P) 15.00 72.50 87.50 92.50 100.00 40 DISTCA CA (RMS) 0.62 1.46 1.69 1.89 2.39 DISTCA ALL (N) 44 149 210 250 296 303 303 DISTALL ALL (P) 14.52 49.17 69.31 82.51 97.69 303 DISTALL ALL (RMS) 0.77 1.36 1.75 2.26 3.37 DISTALL END of the results output