####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 275), selected 40 , name T0543TS350_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS350_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 73 - 95 4.01 13.70 LCS_AVERAGE: 51.62 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 74 - 83 1.80 14.27 LCS_AVERAGE: 20.50 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 66 - 71 0.99 17.06 LONGEST_CONTINUOUS_SEGMENT: 6 70 - 75 0.94 18.39 LONGEST_CONTINUOUS_SEGMENT: 6 78 - 83 0.64 16.27 LONGEST_CONTINUOUS_SEGMENT: 6 88 - 93 0.79 12.49 LCS_AVERAGE: 13.25 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 5 6 17 3 4 5 6 7 11 13 13 13 14 15 16 16 16 17 20 21 23 27 27 LCS_GDT S 57 S 57 5 6 17 3 4 5 6 7 11 13 13 13 14 15 16 16 16 16 17 17 25 27 27 LCS_GDT C 58 C 58 5 6 17 3 4 5 6 7 11 13 13 13 14 15 16 16 16 16 17 17 20 23 25 LCS_GDT K 59 K 59 5 6 17 3 4 5 6 7 11 13 13 13 14 15 16 16 16 16 18 21 22 24 25 LCS_GDT G 60 G 60 5 6 17 3 3 5 6 7 11 13 13 13 14 15 16 16 16 16 18 20 22 24 25 LCS_GDT R 61 R 61 4 6 17 3 3 4 5 6 7 7 8 11 14 15 16 16 16 16 17 17 18 20 22 LCS_GDT C 62 C 62 4 6 17 3 3 4 5 5 7 7 10 13 14 15 16 16 16 16 17 17 18 18 19 LCS_GDT F 63 F 63 4 6 17 3 4 5 6 7 11 13 13 13 14 15 16 16 16 16 17 17 18 18 22 LCS_GDT E 64 E 64 4 7 17 3 4 4 5 7 11 13 13 13 14 15 16 16 16 16 18 20 22 23 25 LCS_GDT L 65 L 65 4 8 17 4 6 6 7 7 8 8 9 10 11 15 16 16 16 16 17 20 21 23 24 LCS_GDT Q 66 Q 66 6 8 17 4 6 6 7 8 11 13 13 13 14 15 16 16 16 17 19 21 22 24 25 LCS_GDT E 67 E 67 6 8 17 4 6 6 7 8 10 13 13 13 14 15 16 16 16 16 18 21 22 25 27 LCS_GDT V 68 V 68 6 8 17 4 6 6 7 8 11 13 13 13 14 15 16 16 16 18 21 23 25 27 27 LCS_GDT G 69 G 69 6 8 18 0 3 5 7 8 11 13 13 13 14 15 16 17 17 18 20 23 25 27 27 LCS_GDT P 70 P 70 6 8 18 4 6 6 7 8 11 13 13 13 14 15 16 16 17 18 20 21 22 25 26 LCS_GDT P 71 P 71 6 8 18 3 6 6 7 8 9 13 13 13 14 15 16 16 16 18 19 20 21 21 24 LCS_GDT D 72 D 72 6 8 22 4 5 6 6 8 8 8 9 11 14 15 16 17 19 20 20 22 23 25 26 LCS_GDT C 73 C 73 6 7 23 4 5 6 6 8 8 10 10 11 14 15 17 18 20 23 23 23 25 27 27 LCS_GDT R 74 R 74 6 10 23 4 5 6 6 9 11 14 15 19 21 22 22 22 22 23 23 23 25 27 27 LCS_GDT C 75 C 75 6 10 23 4 5 6 9 11 14 17 18 19 21 22 22 22 22 23 23 23 25 27 27 LCS_GDT D 76 D 76 5 10 23 4 5 6 9 11 14 17 18 19 21 22 22 22 22 23 23 23 25 27 27 LCS_GDT N 77 N 77 5 10 23 4 5 6 9 11 14 17 18 19 21 22 22 22 22 23 23 23 25 27 27 LCS_GDT L 78 L 78 6 10 23 5 5 7 9 11 14 17 18 19 21 22 22 22 22 23 23 23 25 27 27 LCS_GDT C 79 C 79 6 10 23 5 5 7 9 11 14 17 18 19 21 22 22 22 22 23 23 23 25 27 27 LCS_GDT K 80 K 80 6 10 23 5 5 7 9 11 14 17 18 19 21 22 22 22 22 23 23 23 25 27 27 LCS_GDT S 81 S 81 6 10 23 5 5 7 9 11 14 17 18 19 21 22 22 22 22 23 23 23 25 27 27 LCS_GDT Y 82 Y 82 6 10 23 5 5 7 9 11 14 17 18 19 21 22 22 22 22 23 23 23 25 27 27 LCS_GDT S 83 S 83 6 10 23 3 5 7 9 11 14 17 18 19 21 22 22 22 22 23 23 23 25 27 27 LCS_GDT S 84 S 84 4 7 23 3 3 4 5 7 10 13 17 19 21 22 22 22 22 23 23 23 25 27 27 LCS_GDT C 85 C 85 4 7 23 3 3 4 9 10 14 17 18 19 21 22 22 22 22 23 23 23 25 27 27 LCS_GDT C 86 C 86 4 7 23 3 3 5 9 10 12 13 16 18 21 22 22 22 22 23 23 23 25 27 27 LCS_GDT H 87 H 87 3 9 23 3 4 7 9 11 14 17 18 19 21 22 22 22 22 23 23 23 25 27 27 LCS_GDT D 88 D 88 6 9 23 4 5 7 8 10 14 17 18 19 21 22 22 22 22 23 23 23 25 27 27 LCS_GDT F 89 F 89 6 9 23 4 5 6 8 9 9 10 15 19 21 22 22 22 22 23 23 23 25 27 27 LCS_GDT D 90 D 90 6 9 23 4 5 6 8 9 9 12 18 19 21 22 22 22 22 23 23 23 25 27 27 LCS_GDT E 91 E 91 6 9 23 4 5 7 9 11 14 17 18 19 21 22 22 22 22 23 23 23 25 27 27 LCS_GDT L 92 L 92 6 9 23 4 5 7 8 10 14 17 18 19 21 22 22 22 22 23 23 23 25 27 27 LCS_GDT C 93 C 93 6 9 23 3 5 7 8 10 13 17 18 19 21 22 22 22 22 23 23 23 25 27 27 LCS_GDT L 94 L 94 5 9 23 3 5 7 8 10 14 17 18 19 21 22 22 22 22 23 23 23 25 27 27 LCS_GDT K 95 K 95 5 9 23 3 5 7 8 10 14 17 18 19 21 22 22 22 22 23 23 23 25 27 27 LCS_AVERAGE LCS_A: 28.46 ( 13.25 20.50 51.62 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 6 7 9 11 14 17 18 19 21 22 22 22 22 23 23 23 25 27 27 GDT PERCENT_AT 12.50 15.00 17.50 22.50 27.50 35.00 42.50 45.00 47.50 52.50 55.00 55.00 55.00 55.00 57.50 57.50 57.50 62.50 67.50 67.50 GDT RMS_LOCAL 0.15 0.57 0.95 1.28 1.56 2.15 2.68 2.78 2.92 3.18 3.33 3.33 3.33 3.33 4.01 4.01 4.01 5.68 6.36 6.36 GDT RMS_ALL_AT 16.91 17.69 11.67 14.52 14.63 14.05 13.82 13.93 13.90 13.68 13.62 13.62 13.62 13.62 13.70 13.70 13.70 12.67 12.23 12.23 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 17.737 0 0.146 0.146 17.807 0.000 0.000 LGA S 57 S 57 16.340 1 0.029 0.041 16.600 0.000 0.000 LGA C 58 C 58 17.288 1 0.585 0.537 19.329 0.000 0.000 LGA K 59 K 59 16.912 4 0.554 0.577 20.369 0.000 0.000 LGA G 60 G 60 20.578 0 0.573 0.573 21.468 0.000 0.000 LGA R 61 R 61 24.013 6 0.093 0.104 25.830 0.000 0.000 LGA C 62 C 62 25.897 1 0.633 0.570 26.674 0.000 0.000 LGA F 63 F 63 26.041 6 0.591 0.571 26.557 0.000 0.000 LGA E 64 E 64 22.530 4 0.070 0.085 23.309 0.000 0.000 LGA L 65 L 65 24.547 3 0.659 0.610 25.909 0.000 0.000 LGA Q 66 Q 66 20.569 4 0.091 0.124 21.825 0.000 0.000 LGA E 67 E 67 19.464 4 0.141 0.157 20.814 0.000 0.000 LGA V 68 V 68 16.289 2 0.692 0.660 17.288 0.000 0.000 LGA G 69 G 69 18.332 0 0.042 0.042 21.498 0.000 0.000 LGA P 70 P 70 22.167 2 0.068 0.104 23.146 0.000 0.000 LGA P 71 P 71 22.914 2 0.201 0.204 25.527 0.000 0.000 LGA D 72 D 72 17.832 3 0.108 0.139 19.635 0.000 0.000 LGA C 73 C 73 11.909 1 0.080 0.098 14.300 0.714 0.476 LGA R 74 R 74 5.556 6 0.664 0.615 7.749 32.143 13.247 LGA C 75 C 75 2.939 1 0.408 0.379 5.167 48.571 36.746 LGA D 76 D 76 2.694 3 0.044 0.064 2.720 59.048 37.619 LGA N 77 N 77 3.365 3 0.094 0.115 3.830 48.333 29.583 LGA L 78 L 78 2.848 3 0.228 0.232 2.848 57.143 35.714 LGA C 79 C 79 2.562 1 0.060 0.115 2.832 60.952 50.159 LGA K 80 K 80 2.318 4 0.031 0.049 2.406 64.762 35.979 LGA S 81 S 81 1.651 1 0.092 0.093 1.914 72.857 60.714 LGA Y 82 Y 82 1.721 7 0.193 0.207 1.766 72.857 30.357 LGA S 83 S 83 2.038 1 0.329 0.311 3.375 68.810 54.206 LGA S 84 S 84 5.128 1 0.104 0.099 7.286 29.881 21.587 LGA C 85 C 85 3.261 1 0.118 0.189 4.468 45.119 39.603 LGA C 86 C 86 5.856 1 0.069 0.118 8.392 35.238 24.286 LGA H 87 H 87 2.753 5 0.644 0.613 4.406 54.048 25.333 LGA D 88 D 88 2.431 3 0.277 0.269 3.365 59.167 35.833 LGA F 89 F 89 4.882 6 0.131 0.139 6.420 37.262 15.108 LGA D 90 D 90 3.950 3 0.043 0.058 4.593 50.238 29.048 LGA E 91 E 91 0.787 4 0.148 0.150 1.904 83.690 45.291 LGA L 92 L 92 2.851 3 0.092 0.112 3.693 55.833 33.333 LGA C 93 C 93 3.390 1 0.050 0.102 4.292 46.905 39.603 LGA L 94 L 94 3.384 3 0.288 0.278 4.135 46.786 29.643 LGA K 95 K 95 3.228 4 0.627 0.573 6.493 37.143 21.323 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 197 65.02 40 SUMMARY(RMSD_GDC): 10.378 10.219 10.355 29.188 18.620 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 18 2.78 35.000 33.645 0.625 LGA_LOCAL RMSD: 2.778 Number of atoms: 18 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 13.928 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 10.378 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.000296 * X + -0.899622 * Y + -0.436670 * Z + 50.940411 Y_new = 0.349137 * X + 0.409098 * Y + -0.843055 * Z + 82.395454 Z_new = 0.937071 * X + -0.152707 * Y + 0.313971 * Z + 19.575808 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.571643 -1.214146 -0.452687 [DEG: 90.0485 -69.5654 -25.9370 ] ZXZ: -0.477913 1.251424 1.732338 [DEG: -27.3824 71.7013 99.2557 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS350_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS350_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 18 2.78 33.645 10.38 REMARK ---------------------------------------------------------- MOLECULE T0543TS350_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT N/A ATOM 379 N GLY 56 28.462 87.809 15.685 1.00 0.00 N ATOM 380 CA GLY 56 27.582 88.435 14.705 1.00 0.00 C ATOM 381 C GLY 56 28.339 89.439 13.845 1.00 0.00 C ATOM 382 O GLY 56 27.785 90.010 12.908 1.00 0.00 O ATOM 383 CEN GLY 56 27.581 88.435 14.705 1.00 0.00 C ATOM 384 H GLY 56 29.035 87.028 15.403 1.00 0.00 H ATOM 385 N SER 57 29.611 89.648 14.170 1.00 0.00 N ATOM 386 CA SER 57 30.464 90.539 13.393 1.00 0.00 C ATOM 387 C SER 57 31.897 90.025 13.343 1.00 0.00 C ATOM 388 O SER 57 32.420 89.519 14.336 1.00 0.00 O ATOM 389 CB SER 57 30.424 91.939 13.975 1.00 0.00 C ATOM 390 CEN SER 57 30.396 92.332 14.350 1.00 0.00 C ATOM 391 H SER 57 29.996 89.178 14.977 1.00 0.00 H ATOM 392 N CYS 58 32.527 90.159 12.182 1.00 0.00 N ATOM 393 CA CYS 58 33.911 89.734 12.008 1.00 0.00 C ATOM 394 C CYS 58 34.858 90.586 12.844 1.00 0.00 C ATOM 395 O CYS 58 34.832 91.815 12.769 1.00 0.00 O ATOM 396 CB CYS 58 34.151 89.967 10.516 1.00 0.00 C ATOM 397 CEN CYS 58 34.264 89.290 9.754 1.00 0.00 C ATOM 398 H CYS 58 32.036 90.566 11.399 1.00 0.00 H ATOM 399 N LYS 59 35.694 89.927 13.638 1.00 0.00 N ATOM 400 CA LYS 59 36.657 90.623 14.483 1.00 0.00 C ATOM 401 C LYS 59 38.044 90.623 13.851 1.00 0.00 C ATOM 402 O LYS 59 38.617 91.681 13.591 1.00 0.00 O ATOM 403 CB LYS 59 36.713 89.984 15.871 1.00 0.00 C ATOM 404 CEN LYS 59 36.194 90.061 17.921 1.00 0.00 C ATOM 405 H LYS 59 35.660 88.918 13.659 1.00 0.00 H ATOM 406 N GLY 60 38.578 89.431 13.607 1.00 0.00 N ATOM 407 CA GLY 60 39.899 89.291 13.005 1.00 0.00 C ATOM 408 C GLY 60 39.796 88.985 11.517 1.00 0.00 C ATOM 409 O GLY 60 39.119 88.038 11.114 1.00 0.00 O ATOM 410 CEN GLY 60 39.899 89.292 13.005 1.00 0.00 C ATOM 411 H GLY 60 38.056 88.600 13.845 1.00 0.00 H ATOM 412 N ARG 61 40.471 89.790 10.704 1.00 0.00 N ATOM 413 CA ARG 61 40.377 89.668 9.254 1.00 0.00 C ATOM 414 C ARG 61 41.311 88.583 8.731 1.00 0.00 C ATOM 415 O ARG 61 41.237 88.196 7.565 1.00 0.00 O ATOM 416 CB ARG 61 40.618 90.995 8.550 1.00 0.00 C ATOM 417 CEN ARG 61 40.177 93.162 7.428 1.00 0.00 C ATOM 418 H ARG 61 41.064 90.505 11.100 1.00 0.00 H ATOM 419 N CYS 62 42.187 88.095 9.602 1.00 0.00 N ATOM 420 CA CYS 62 43.239 87.170 9.193 1.00 0.00 C ATOM 421 C CYS 62 42.690 85.763 8.996 1.00 0.00 C ATOM 422 O CYS 62 43.280 84.950 8.286 1.00 0.00 O ATOM 423 CB CYS 62 44.203 87.210 10.379 1.00 0.00 C ATOM 424 CEN CYS 62 45.140 87.621 10.453 1.00 0.00 C ATOM 425 H CYS 62 42.125 88.371 10.571 1.00 0.00 H ATOM 426 N PHE 63 41.555 85.483 9.627 1.00 0.00 N ATOM 427 CA PHE 63 40.896 84.190 9.482 1.00 0.00 C ATOM 428 C PHE 63 39.389 84.316 9.663 1.00 0.00 C ATOM 429 O PHE 63 38.909 85.229 10.334 1.00 0.00 O ATOM 430 CB PHE 63 41.464 83.185 10.485 1.00 0.00 C ATOM 431 CEN PHE 63 42.531 82.006 10.513 1.00 0.00 C ATOM 432 H PHE 63 41.138 86.183 10.224 1.00 0.00 H ATOM 433 N GLU 64 38.646 83.393 9.061 1.00 0.00 N ATOM 434 CA GLU 64 37.196 83.364 9.204 1.00 0.00 C ATOM 435 C GLU 64 36.789 83.039 10.636 1.00 0.00 C ATOM 436 O GLU 64 37.308 82.100 11.240 1.00 0.00 O ATOM 437 CB GLU 64 36.583 82.346 8.240 1.00 0.00 C ATOM 438 CEN GLU 64 35.799 81.992 6.768 1.00 0.00 C ATOM 439 H GLU 64 39.099 82.693 8.490 1.00 0.00 H ATOM 440 N LEU 65 35.860 83.821 11.174 1.00 0.00 N ATOM 441 CA LEU 65 35.381 83.617 12.536 1.00 0.00 C ATOM 442 C LEU 65 34.635 82.295 12.666 1.00 0.00 C ATOM 443 O LEU 65 33.931 81.876 11.747 1.00 0.00 O ATOM 444 CB LEU 65 34.481 84.783 12.962 1.00 0.00 C ATOM 445 CEN LEU 65 34.707 85.995 13.886 1.00 0.00 C ATOM 446 H LEU 65 35.473 84.575 10.625 1.00 0.00 H ATOM 447 N GLN 66 34.792 81.644 13.813 1.00 0.00 N ATOM 448 CA GLN 66 34.104 80.385 14.079 1.00 0.00 C ATOM 449 C GLN 66 32.595 80.547 13.962 1.00 0.00 C ATOM 450 O GLN 66 31.996 81.384 14.636 1.00 0.00 O ATOM 451 CB GLN 66 34.462 79.863 15.473 1.00 0.00 C ATOM 452 CEN GLN 66 35.457 78.731 16.353 1.00 0.00 C ATOM 453 H GLN 66 35.403 82.029 14.518 1.00 0.00 H ATOM 454 N GLU 67 31.982 79.739 13.102 1.00 0.00 N ATOM 455 CA GLU 67 30.555 79.851 12.828 1.00 0.00 C ATOM 456 C GLU 67 29.735 79.075 13.852 1.00 0.00 C ATOM 457 O GLU 67 30.181 78.049 14.367 1.00 0.00 O ATOM 458 CB GLU 67 30.240 79.355 11.416 1.00 0.00 C ATOM 459 CEN GLU 67 29.923 79.679 9.773 1.00 0.00 C ATOM 460 H GLU 67 32.521 79.030 12.625 1.00 0.00 H ATOM 461 N VAL 68 28.537 79.569 14.141 1.00 0.00 N ATOM 462 CA VAL 68 27.615 78.873 15.030 1.00 0.00 C ATOM 463 C VAL 68 26.767 77.865 14.263 1.00 0.00 C ATOM 464 O VAL 68 25.888 77.220 14.833 1.00 0.00 O ATOM 465 CB VAL 68 26.686 79.857 15.765 1.00 0.00 C ATOM 466 CEN VAL 68 26.549 80.136 16.379 1.00 0.00 C ATOM 467 H VAL 68 28.258 80.451 13.735 1.00 0.00 H ATOM 468 N GLY 69 27.038 77.735 12.969 1.00 0.00 N ATOM 469 CA GLY 69 26.436 76.679 12.163 1.00 0.00 C ATOM 470 C GLY 69 24.967 76.970 11.882 1.00 0.00 C ATOM 471 O GLY 69 24.511 78.104 12.027 1.00 0.00 O ATOM 472 CEN GLY 69 26.435 76.680 12.163 1.00 0.00 C ATOM 473 H GLY 69 27.677 78.384 12.532 1.00 0.00 H ATOM 474 N PRO 70 24.232 75.940 11.479 1.00 0.00 N ATOM 475 CA PRO 70 22.800 76.068 11.237 1.00 0.00 C ATOM 476 C PRO 70 22.054 76.425 12.517 1.00 0.00 C ATOM 477 O PRO 70 22.572 76.243 13.619 1.00 0.00 O ATOM 478 CB PRO 70 22.386 74.692 10.690 1.00 0.00 C ATOM 479 CEN PRO 70 24.100 74.278 10.968 1.00 0.00 C ATOM 480 N PRO 71 20.836 76.932 12.363 1.00 0.00 N ATOM 481 CA PRO 71 20.054 77.404 13.500 1.00 0.00 C ATOM 482 C PRO 71 19.760 76.271 14.475 1.00 0.00 C ATOM 483 O PRO 71 19.382 76.508 15.621 1.00 0.00 O ATOM 484 CB PRO 71 18.772 77.969 12.866 1.00 0.00 C ATOM 485 CEN PRO 71 19.508 77.409 11.340 1.00 0.00 C ATOM 486 N ASP 72 19.937 75.038 14.011 1.00 0.00 N ATOM 487 CA ASP 72 19.748 73.867 14.858 1.00 0.00 C ATOM 488 C ASP 72 20.739 73.856 16.014 1.00 0.00 C ATOM 489 O ASP 72 21.915 74.176 15.839 1.00 0.00 O ATOM 490 CB ASP 72 19.884 72.582 14.036 1.00 0.00 C ATOM 491 CEN ASP 72 19.308 71.890 13.562 1.00 0.00 C ATOM 492 H ASP 72 20.210 74.909 13.048 1.00 0.00 H ATOM 493 N CYS 73 20.258 73.486 17.197 1.00 0.00 N ATOM 494 CA CYS 73 21.097 73.451 18.388 1.00 0.00 C ATOM 495 C CYS 73 22.101 72.308 18.321 1.00 0.00 C ATOM 496 O CYS 73 21.777 71.210 17.869 1.00 0.00 O ATOM 497 CB CYS 73 20.084 73.214 19.508 1.00 0.00 C ATOM 498 CEN CYS 73 19.754 73.850 20.243 1.00 0.00 C ATOM 499 H CYS 73 19.285 73.223 17.272 1.00 0.00 H ATOM 500 N ARG 74 23.322 72.571 18.774 1.00 0.00 N ATOM 501 CA ARG 74 24.362 71.550 18.814 1.00 0.00 C ATOM 502 C ARG 74 24.257 70.705 20.076 1.00 0.00 C ATOM 503 O ARG 74 24.784 69.594 20.136 1.00 0.00 O ATOM 504 CB ARG 74 25.755 72.143 18.654 1.00 0.00 C ATOM 505 CEN ARG 74 27.875 72.889 17.605 1.00 0.00 C ATOM 506 H ARG 74 23.535 73.503 19.101 1.00 0.00 H ATOM 507 N CYS 75 23.575 71.237 21.083 1.00 0.00 N ATOM 508 CA CYS 75 23.370 70.518 22.335 1.00 0.00 C ATOM 509 C CYS 75 21.916 70.087 22.492 1.00 0.00 C ATOM 510 O CYS 75 21.047 70.904 22.797 1.00 0.00 O ATOM 511 CB CYS 75 23.739 71.562 23.389 1.00 0.00 C ATOM 512 CEN CYS 75 24.553 71.611 24.010 1.00 0.00 C ATOM 513 H CYS 75 23.188 72.164 20.980 1.00 0.00 H ATOM 514 N ASP 76 21.660 68.801 22.281 1.00 0.00 N ATOM 515 CA ASP 76 20.306 68.266 22.365 1.00 0.00 C ATOM 516 C ASP 76 19.840 68.172 23.812 1.00 0.00 C ATOM 517 O ASP 76 20.576 68.521 24.735 1.00 0.00 O ATOM 518 CB ASP 76 20.231 66.890 21.698 1.00 0.00 C ATOM 519 CEN ASP 76 19.962 66.461 20.814 1.00 0.00 C ATOM 520 H ASP 76 22.422 68.177 22.057 1.00 0.00 H ATOM 521 N ASN 77 18.613 67.700 24.004 1.00 0.00 N ATOM 522 CA ASN 77 18.042 67.569 25.338 1.00 0.00 C ATOM 523 C ASN 77 18.912 66.687 26.225 1.00 0.00 C ATOM 524 O ASN 77 19.174 67.020 27.382 1.00 0.00 O ATOM 525 CB ASN 77 16.626 67.026 25.286 1.00 0.00 C ATOM 526 CEN ASN 77 15.646 67.400 25.247 1.00 0.00 C ATOM 527 H ASN 77 18.062 67.424 23.204 1.00 0.00 H ATOM 528 N LEU 78 19.356 65.561 25.678 1.00 0.00 N ATOM 529 CA LEU 78 20.204 64.633 26.416 1.00 0.00 C ATOM 530 C LEU 78 21.633 65.150 26.513 1.00 0.00 C ATOM 531 O LEU 78 22.298 64.980 27.535 1.00 0.00 O ATOM 532 CB LEU 78 20.181 63.251 25.752 1.00 0.00 C ATOM 533 CEN LEU 78 19.482 61.927 26.115 1.00 0.00 C ATOM 534 H LEU 78 19.100 65.343 24.725 1.00 0.00 H ATOM 535 N CYS 79 22.101 65.784 25.442 1.00 0.00 N ATOM 536 CA CYS 79 23.437 66.368 25.421 1.00 0.00 C ATOM 537 C CYS 79 23.543 67.538 26.391 1.00 0.00 C ATOM 538 O CYS 79 24.494 67.629 27.167 1.00 0.00 O ATOM 539 CB CYS 79 23.572 66.851 23.977 1.00 0.00 C ATOM 540 CEN CYS 79 24.150 66.487 23.211 1.00 0.00 C ATOM 541 H CYS 79 21.516 65.864 24.622 1.00 0.00 H ATOM 542 N LYS 80 22.561 68.432 26.340 1.00 0.00 N ATOM 543 CA LYS 80 22.504 69.559 27.264 1.00 0.00 C ATOM 544 C LYS 80 22.474 69.084 28.711 1.00 0.00 C ATOM 545 O LYS 80 23.218 69.585 29.554 1.00 0.00 O ATOM 546 CB LYS 80 21.280 70.429 26.970 1.00 0.00 C ATOM 547 CEN LYS 80 20.478 72.204 26.144 1.00 0.00 C ATOM 548 H LYS 80 21.838 68.328 25.644 1.00 0.00 H ATOM 549 N SER 81 21.610 68.115 28.993 1.00 0.00 N ATOM 550 CA SER 81 21.438 67.613 30.350 1.00 0.00 C ATOM 551 C SER 81 22.758 67.115 30.926 1.00 0.00 C ATOM 552 O SER 81 22.941 67.076 32.142 1.00 0.00 O ATOM 553 CB SER 81 20.403 66.505 30.370 1.00 0.00 C ATOM 554 CEN SER 81 20.116 66.074 30.202 1.00 0.00 C ATOM 555 H SER 81 21.058 67.716 28.247 1.00 0.00 H ATOM 556 N TYR 82 23.676 66.737 30.043 1.00 0.00 N ATOM 557 CA TYR 82 24.957 66.180 30.462 1.00 0.00 C ATOM 558 C TYR 82 25.743 67.177 31.304 1.00 0.00 C ATOM 559 O TYR 82 26.317 66.820 32.332 1.00 0.00 O ATOM 560 CB TYR 82 25.780 65.756 29.244 1.00 0.00 C ATOM 561 CEN TYR 82 26.199 64.320 28.332 1.00 0.00 C ATOM 562 H TYR 82 23.483 66.838 29.057 1.00 0.00 H ATOM 563 N SER 83 25.767 68.429 30.860 1.00 0.00 N ATOM 564 CA SER 83 26.598 69.449 31.487 1.00 0.00 C ATOM 565 C SER 83 25.968 70.830 31.359 1.00 0.00 C ATOM 566 O SER 83 26.564 71.833 31.749 1.00 0.00 O ATOM 567 CB SER 83 27.985 69.442 30.874 1.00 0.00 C ATOM 568 CEN SER 83 28.372 69.394 30.495 1.00 0.00 C ATOM 569 H SER 83 25.193 68.680 30.068 1.00 0.00 H ATOM 570 N SER 84 24.759 70.874 30.809 1.00 0.00 N ATOM 571 CA SER 84 24.052 72.134 30.610 1.00 0.00 C ATOM 572 C SER 84 24.876 73.100 29.769 1.00 0.00 C ATOM 573 O SER 84 24.795 74.315 29.944 1.00 0.00 O ATOM 574 CB SER 84 23.712 72.758 31.950 1.00 0.00 C ATOM 575 CEN SER 84 23.764 72.899 32.473 1.00 0.00 C ATOM 576 H SER 84 24.318 70.012 30.521 1.00 0.00 H ATOM 577 N CYS 85 25.669 72.552 28.854 1.00 0.00 N ATOM 578 CA CYS 85 26.579 73.357 28.047 1.00 0.00 C ATOM 579 C CYS 85 25.825 74.428 27.271 1.00 0.00 C ATOM 580 O CYS 85 24.810 74.149 26.632 1.00 0.00 O ATOM 581 CB CYS 85 27.184 72.327 27.093 1.00 0.00 C ATOM 582 CEN CYS 85 28.133 71.937 27.060 1.00 0.00 C ATOM 583 H CYS 85 25.640 71.552 28.714 1.00 0.00 H ATOM 584 N CYS 86 26.326 75.658 27.331 1.00 0.00 N ATOM 585 CA CYS 86 25.858 76.720 26.447 1.00 0.00 C ATOM 586 C CYS 86 27.014 77.337 25.670 1.00 0.00 C ATOM 587 O CYS 86 28.092 77.566 26.218 1.00 0.00 O ATOM 588 CB CYS 86 25.263 77.734 27.425 1.00 0.00 C ATOM 589 CEN CYS 86 24.283 77.987 27.595 1.00 0.00 C ATOM 590 H CYS 86 27.050 75.862 28.005 1.00 0.00 H ATOM 591 N HIS 87 26.782 77.606 24.390 1.00 0.00 N ATOM 592 CA HIS 87 27.862 77.936 23.468 1.00 0.00 C ATOM 593 C HIS 87 27.658 79.313 22.849 1.00 0.00 C ATOM 594 O HIS 87 26.527 79.777 22.705 1.00 0.00 O ATOM 595 CB HIS 87 27.975 76.879 22.366 1.00 0.00 C ATOM 596 CEN HIS 87 28.728 75.699 22.097 1.00 0.00 C ATOM 597 H HIS 87 25.832 77.581 24.045 1.00 0.00 H ATOM 598 N ASP 88 28.758 79.963 22.486 1.00 0.00 N ATOM 599 CA ASP 88 28.699 81.204 21.724 1.00 0.00 C ATOM 600 C ASP 88 28.213 80.955 20.303 1.00 0.00 C ATOM 601 O ASP 88 27.505 81.780 19.725 1.00 0.00 O ATOM 602 CB ASP 88 30.070 81.884 21.699 1.00 0.00 C ATOM 603 CEN ASP 88 30.590 82.619 22.175 1.00 0.00 C ATOM 604 H ASP 88 29.659 79.586 22.743 1.00 0.00 H ATOM 605 N PHE 89 28.596 79.814 19.742 1.00 0.00 N ATOM 606 CA PHE 89 28.064 79.372 18.458 1.00 0.00 C ATOM 607 C PHE 89 26.583 79.032 18.563 1.00 0.00 C ATOM 608 O PHE 89 25.803 79.324 17.658 1.00 0.00 O ATOM 609 CB PHE 89 28.847 78.165 17.941 1.00 0.00 C ATOM 610 CEN PHE 89 30.027 77.861 16.920 1.00 0.00 C ATOM 611 H PHE 89 29.274 79.235 20.218 1.00 0.00 H ATOM 612 N ASP 90 26.202 78.410 19.674 1.00 0.00 N ATOM 613 CA ASP 90 24.812 78.036 19.905 1.00 0.00 C ATOM 614 C ASP 90 23.934 79.267 20.093 1.00 0.00 C ATOM 615 O ASP 90 22.769 79.278 19.693 1.00 0.00 O ATOM 616 CB ASP 90 24.698 77.118 21.124 1.00 0.00 C ATOM 617 CEN ASP 90 24.629 76.128 21.357 1.00 0.00 C ATOM 618 H ASP 90 26.893 78.191 20.377 1.00 0.00 H ATOM 619 N GLU 91 24.500 80.302 20.703 1.00 0.00 N ATOM 620 CA GLU 91 23.818 81.586 20.824 1.00 0.00 C ATOM 621 C GLU 91 23.593 82.221 19.458 1.00 0.00 C ATOM 622 O GLU 91 22.539 82.802 19.199 1.00 0.00 O ATOM 623 CB GLU 91 24.617 82.534 21.721 1.00 0.00 C ATOM 624 CEN GLU 91 24.880 83.260 23.240 1.00 0.00 C ATOM 625 H GLU 91 25.426 80.198 21.093 1.00 0.00 H ATOM 626 N LEU 92 24.590 82.108 18.587 1.00 0.00 N ATOM 627 CA LEU 92 24.502 82.671 17.245 1.00 0.00 C ATOM 628 C LEU 92 23.483 81.919 16.398 1.00 0.00 C ATOM 629 O LEU 92 22.833 82.501 15.530 1.00 0.00 O ATOM 630 CB LEU 92 25.880 82.646 16.569 1.00 0.00 C ATOM 631 CEN LEU 92 26.924 83.742 16.286 1.00 0.00 C ATOM 632 H LEU 92 25.431 81.621 18.863 1.00 0.00 H ATOM 633 N CYS 93 23.348 80.622 16.657 1.00 0.00 N ATOM 634 CA CYS 93 22.384 79.795 15.942 1.00 0.00 C ATOM 635 C CYS 93 20.966 80.323 16.118 1.00 0.00 C ATOM 636 O CYS 93 20.196 80.392 15.160 1.00 0.00 O ATOM 637 CB CYS 93 22.539 78.433 16.619 1.00 0.00 C ATOM 638 CEN CYS 93 22.952 77.564 16.263 1.00 0.00 C ATOM 639 H CYS 93 23.928 80.199 17.368 1.00 0.00 H ATOM 640 N LEU 94 20.628 80.696 17.348 1.00 0.00 N ATOM 641 CA LEU 94 19.279 81.146 17.668 1.00 0.00 C ATOM 642 C LEU 94 19.018 82.541 17.113 1.00 0.00 C ATOM 643 O LEU 94 17.869 82.974 17.010 1.00 0.00 O ATOM 644 CB LEU 94 19.059 81.126 19.185 1.00 0.00 C ATOM 645 CEN LEU 94 18.291 80.170 20.118 1.00 0.00 C ATOM 646 H LEU 94 21.324 80.666 18.080 1.00 0.00 H ATOM 647 N LYS 95 20.089 83.241 16.756 1.00 0.00 N ATOM 648 CA LYS 95 19.981 84.605 16.253 1.00 0.00 C ATOM 649 C LYS 95 19.829 84.622 14.738 1.00 0.00 C ATOM 650 O LYS 95 19.731 85.686 14.126 1.00 0.00 O ATOM 651 CB LYS 95 21.202 85.428 16.668 1.00 0.00 C ATOM 652 CEN LYS 95 22.047 86.901 17.930 1.00 0.00 C ATOM 653 H LYS 95 21.003 82.816 16.837 1.00 0.00 H TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 197 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 69.72 62.8 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 71.24 62.5 56 100.0 56 ARMSMC BURIED . . . . . . . . 65.70 63.6 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 25 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 18 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 10.38 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 10.38 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.2594 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 11.08 29 100.0 29 CRMSCA BURIED . . . . . . . . 8.23 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 10.36 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 11.02 142 100.0 142 CRMSMC BURIED . . . . . . . . 8.42 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.91 37 25.9 143 CRMSSC RELIABLE SIDE CHAINS . 10.91 37 29.6 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 11.77 26 25.2 103 CRMSSC BURIED . . . . . . . . 8.55 11 27.5 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.36 197 65.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 11.02 142 64.8 219 CRMSALL BURIED . . . . . . . . 8.42 55 65.5 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.532 1.000 0.500 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 10.181 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 7.821 1.000 0.500 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.480 1.000 0.500 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 10.077 1.000 0.500 142 100.0 142 ERRMC BURIED . . . . . . . . 7.939 1.000 0.500 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.847 1.000 0.500 37 25.9 143 ERRSC RELIABLE SIDE CHAINS . 9.847 1.000 0.500 37 29.6 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 10.612 1.000 0.500 26 25.2 103 ERRSC BURIED . . . . . . . . 8.039 1.000 0.500 11 27.5 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.480 1.000 0.500 197 65.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 10.077 1.000 0.500 142 64.8 219 ERRALL BURIED . . . . . . . . 7.939 1.000 0.500 55 65.5 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 6 24 40 40 DISTCA CA (P) 0.00 0.00 0.00 15.00 60.00 40 DISTCA CA (RMS) 0.00 0.00 0.00 4.42 7.02 DISTCA ALL (N) 0 0 1 33 118 197 303 DISTALL ALL (P) 0.00 0.00 0.33 10.89 38.94 303 DISTALL ALL (RMS) 0.00 0.00 2.54 4.33 6.91 DISTALL END of the results output