####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS346_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS346_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 62 - 71 4.51 49.08 LONGEST_CONTINUOUS_SEGMENT: 10 63 - 72 4.37 45.81 LONGEST_CONTINUOUS_SEGMENT: 10 69 - 78 4.85 35.57 LONGEST_CONTINUOUS_SEGMENT: 10 70 - 79 4.95 35.50 LONGEST_CONTINUOUS_SEGMENT: 10 72 - 81 4.97 35.47 LCS_AVERAGE: 23.56 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 65 - 71 1.55 43.93 LCS_AVERAGE: 13.38 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 65 - 69 0.97 47.92 LONGEST_CONTINUOUS_SEGMENT: 5 72 - 76 0.93 37.40 LCS_AVERAGE: 9.88 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 4 5 9 3 3 4 5 5 5 5 6 6 7 8 8 8 8 10 10 10 10 10 10 LCS_GDT S 57 S 57 4 5 9 3 3 4 5 5 5 5 6 6 7 8 8 8 9 10 10 10 10 10 11 LCS_GDT C 58 C 58 4 5 9 3 3 4 5 5 5 5 6 6 6 8 8 8 9 10 10 10 10 10 11 LCS_GDT K 59 K 59 4 5 9 3 3 4 5 5 5 6 7 7 7 8 8 9 9 10 10 10 10 11 11 LCS_GDT G 60 G 60 4 5 9 3 4 4 5 5 5 6 7 7 7 8 8 9 9 10 10 11 11 11 12 LCS_GDT R 61 R 61 4 5 9 3 4 4 4 4 5 6 7 7 7 8 8 9 9 10 10 11 11 11 12 LCS_GDT C 62 C 62 4 5 10 3 4 4 5 5 5 6 7 7 7 8 9 9 9 10 10 11 11 11 12 LCS_GDT F 63 F 63 4 5 10 3 4 4 5 5 5 6 7 7 8 8 9 9 9 10 10 11 11 11 12 LCS_GDT E 64 E 64 4 6 10 3 4 4 5 5 6 6 7 8 8 8 9 9 9 10 10 11 11 11 12 LCS_GDT L 65 L 65 5 7 10 3 4 5 6 7 7 7 7 8 8 8 9 9 9 10 10 11 11 11 12 LCS_GDT Q 66 Q 66 5 7 10 3 4 5 6 7 7 7 7 8 8 8 9 9 9 10 10 11 11 11 12 LCS_GDT E 67 E 67 5 7 10 3 4 5 6 7 7 7 7 8 8 8 9 9 9 10 10 11 11 11 12 LCS_GDT V 68 V 68 5 7 10 3 4 5 6 7 7 7 7 8 8 8 9 9 9 10 10 11 11 11 12 LCS_GDT G 69 G 69 5 7 10 3 4 5 6 7 7 7 7 8 8 8 9 9 9 10 10 11 11 11 12 LCS_GDT P 70 P 70 4 7 10 3 3 5 6 7 7 7 7 8 8 8 9 9 9 10 10 11 11 11 12 LCS_GDT P 71 P 71 4 7 10 3 3 5 6 7 7 7 7 8 8 8 9 9 9 10 10 10 10 11 12 LCS_GDT D 72 D 72 5 6 10 3 4 5 5 5 7 7 7 8 8 8 8 9 9 10 10 10 10 11 11 LCS_GDT C 73 C 73 5 6 10 3 4 5 5 5 7 7 7 8 8 8 8 9 9 10 10 10 10 11 11 LCS_GDT R 74 R 74 5 6 10 3 4 5 5 5 7 7 7 8 8 8 8 9 9 10 10 10 10 11 11 LCS_GDT C 75 C 75 5 6 10 3 4 5 5 5 7 7 7 8 8 8 8 9 9 10 10 10 10 11 11 LCS_GDT D 76 D 76 5 6 10 3 4 5 5 5 7 7 7 8 8 8 8 9 9 10 10 10 10 11 11 LCS_GDT N 77 N 77 4 6 10 3 4 4 5 5 7 7 7 8 8 8 8 9 9 10 10 10 10 11 11 LCS_GDT L 78 L 78 4 5 10 3 3 4 4 5 6 6 7 7 8 8 8 9 9 10 10 10 10 11 11 LCS_GDT C 79 C 79 4 5 10 3 3 4 4 5 6 6 7 7 7 8 8 9 9 10 10 10 10 11 11 LCS_GDT K 80 K 80 3 5 10 0 3 3 4 5 6 6 7 7 7 8 8 9 9 10 10 10 10 11 11 LCS_GDT S 81 S 81 3 4 10 0 3 3 4 4 6 6 7 7 8 8 8 8 9 10 10 10 10 11 11 LCS_GDT Y 82 Y 82 3 6 9 0 3 3 5 6 7 7 7 7 8 8 8 8 9 10 10 11 11 11 11 LCS_GDT S 83 S 83 3 6 9 0 3 4 5 6 7 7 7 7 8 8 8 8 9 10 10 11 11 11 11 LCS_GDT S 84 S 84 4 6 9 3 3 4 5 6 7 7 7 7 8 8 8 9 9 10 10 11 11 11 12 LCS_GDT C 85 C 85 4 6 9 3 3 4 5 6 7 7 7 7 8 8 8 9 9 10 10 11 11 11 12 LCS_GDT C 86 C 86 4 6 9 3 3 4 5 6 7 7 7 7 8 8 8 9 9 10 10 11 11 11 12 LCS_GDT H 87 H 87 4 6 9 3 3 4 5 6 7 7 7 7 8 8 8 9 9 10 10 11 11 11 12 LCS_GDT D 88 D 88 3 5 9 3 3 3 5 5 7 7 7 7 8 8 8 9 9 10 10 11 11 11 12 LCS_GDT F 89 F 89 3 4 9 3 3 3 4 4 4 5 5 6 7 8 8 9 9 10 10 11 11 11 12 LCS_GDT D 90 D 90 3 4 9 3 3 3 4 4 4 5 5 6 7 8 8 9 9 10 10 11 11 11 12 LCS_GDT E 91 E 91 3 3 9 3 3 3 3 3 4 4 5 6 7 8 8 9 9 10 10 11 11 11 12 LCS_GDT L 92 L 92 3 3 9 3 3 3 3 3 4 4 4 6 7 7 8 9 9 9 10 11 11 11 12 LCS_GDT C 93 C 93 3 3 8 3 3 3 3 3 4 4 4 5 7 7 8 8 9 9 10 10 10 10 12 LCS_GDT L 94 L 94 3 3 8 3 3 3 3 3 4 4 4 5 5 6 8 8 9 9 10 10 10 10 12 LCS_GDT K 95 K 95 3 3 8 0 3 3 3 3 4 4 4 5 5 5 6 7 9 9 10 10 10 10 12 LCS_AVERAGE LCS_A: 15.60 ( 9.88 13.38 23.56 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 4 5 6 7 7 7 7 8 8 8 9 9 9 10 10 11 11 11 12 GDT PERCENT_AT 7.50 10.00 12.50 15.00 17.50 17.50 17.50 17.50 20.00 20.00 20.00 22.50 22.50 22.50 25.00 25.00 27.50 27.50 27.50 30.00 GDT RMS_LOCAL 0.05 0.46 0.93 1.26 1.55 1.55 1.55 1.55 2.63 2.63 2.63 3.47 3.47 3.47 4.51 4.51 5.58 5.58 5.58 6.34 GDT RMS_ALL_AT 35.19 56.84 37.40 45.17 43.93 43.93 43.93 43.93 45.15 45.15 45.15 46.86 46.86 46.86 49.08 49.08 52.13 52.13 52.13 50.11 # Checking swapping # possible swapping detected: F 63 F 63 # possible swapping detected: E 64 E 64 # possible swapping detected: D 76 D 76 # possible swapping detected: Y 82 Y 82 # possible swapping detected: F 89 F 89 # possible swapping detected: D 90 D 90 # possible swapping detected: E 91 E 91 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 43.498 0 0.556 0.556 43.498 0.000 0.000 LGA S 57 S 57 38.204 0 0.184 0.738 39.625 0.000 0.000 LGA C 58 C 58 33.121 0 0.683 0.780 35.149 0.000 0.000 LGA K 59 K 59 29.195 0 0.131 0.875 33.154 0.000 0.000 LGA G 60 G 60 22.745 0 0.611 0.611 24.774 0.000 0.000 LGA R 61 R 61 19.377 0 0.605 1.361 26.804 0.000 0.000 LGA C 62 C 62 16.816 0 0.066 0.759 19.550 0.000 0.000 LGA F 63 F 63 11.116 0 0.593 1.001 13.374 1.548 0.649 LGA E 64 E 64 7.395 0 0.059 0.847 14.107 15.119 7.037 LGA L 65 L 65 1.237 0 0.671 0.771 5.496 71.429 57.976 LGA Q 66 Q 66 1.501 0 0.033 0.731 8.458 79.643 46.984 LGA E 67 E 67 2.090 0 0.145 1.101 10.040 73.452 39.365 LGA V 68 V 68 1.822 0 0.106 1.094 6.664 73.690 51.565 LGA G 69 G 69 0.448 0 0.256 0.256 3.452 76.071 76.071 LGA P 70 P 70 1.280 0 0.051 0.091 4.542 67.262 57.279 LGA P 71 P 71 1.886 0 0.629 0.544 4.915 55.119 49.456 LGA D 72 D 72 7.390 3 0.156 0.215 9.205 9.762 5.476 LGA C 73 C 73 12.653 0 0.093 0.120 16.693 0.000 0.000 LGA R 74 R 74 19.177 0 0.065 1.049 21.545 0.000 0.000 LGA C 75 C 75 25.581 0 0.598 0.960 29.601 0.000 0.000 LGA D 76 D 76 30.872 0 0.362 0.832 32.286 0.000 0.000 LGA N 77 N 77 34.579 0 0.120 0.888 39.776 0.000 0.000 LGA L 78 L 78 35.222 0 0.600 1.115 37.058 0.000 0.000 LGA C 79 C 79 33.801 0 0.656 0.594 34.761 0.000 0.000 LGA K 80 K 80 37.369 0 0.616 0.768 42.925 0.000 0.000 LGA S 81 S 81 40.215 0 0.634 0.783 43.088 0.000 0.000 LGA Y 82 Y 82 40.848 0 0.690 1.451 50.007 0.000 0.000 LGA S 83 S 83 41.816 0 0.383 0.658 42.565 0.000 0.000 LGA S 84 S 84 45.321 0 0.680 0.872 48.658 0.000 0.000 LGA C 85 C 85 50.779 0 0.035 0.835 54.231 0.000 0.000 LGA C 86 C 86 53.383 0 0.027 0.797 56.325 0.000 0.000 LGA H 87 H 87 55.524 0 0.645 1.034 60.219 0.000 0.000 LGA D 88 D 88 61.724 0 0.559 0.580 65.062 0.000 0.000 LGA F 89 F 89 67.267 0 0.562 1.368 74.105 0.000 0.000 LGA D 90 D 90 69.988 0 0.620 1.614 72.144 0.000 0.000 LGA E 91 E 91 73.746 0 0.532 1.006 77.330 0.000 0.000 LGA L 92 L 92 78.463 0 0.715 0.942 81.871 0.000 0.000 LGA C 93 C 93 83.996 0 0.645 0.911 87.110 0.000 0.000 LGA L 94 L 94 86.718 0 0.446 1.411 88.080 0.000 0.000 LGA K 95 K 95 91.486 0 0.073 0.979 95.063 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 33.530 33.399 33.824 13.077 9.796 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 7 1.55 16.875 16.677 0.424 LGA_LOCAL RMSD: 1.552 Number of atoms: 7 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 43.934 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 33.530 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.140411 * X + 0.869485 * Y + -0.473583 * Z + 243.524078 Y_new = -0.822457 * X + 0.368731 * Y + 0.433131 * Z + 157.355988 Z_new = 0.551226 * X + 0.328685 * Y + 0.766887 * Z + 138.226578 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.401705 -0.583833 0.404913 [DEG: -80.3118 -33.4511 23.1998 ] ZXZ: -2.311610 0.696819 1.033116 [DEG: -132.4455 39.9248 59.1932 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS346_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS346_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 7 1.55 16.677 33.53 REMARK ---------------------------------------------------------- MOLECULE T0543TS346_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT 2gso_A 3ism_A 1zm8_A 1g8t_A ATOM 422 N GLY 56 2.114 64.505 -9.183 1.00119.51 N ATOM 423 CA GLY 56 2.363 63.328 -8.411 1.00119.51 C ATOM 424 C GLY 56 3.801 62.987 -8.595 1.00119.51 C ATOM 425 O GLY 56 4.309 62.968 -9.716 1.00119.51 O ATOM 426 N SER 57 4.498 62.700 -7.481 1.00186.22 N ATOM 427 CA SER 57 5.885 62.358 -7.560 1.00186.22 C ATOM 428 CB SER 57 6.830 63.572 -7.528 1.00186.22 C ATOM 429 OG SER 57 6.584 64.417 -8.643 1.00186.22 O ATOM 430 C SER 57 6.203 61.526 -6.366 1.00186.22 C ATOM 431 O SER 57 5.353 61.300 -5.506 1.00186.22 O ATOM 432 N CYS 58 7.448 61.021 -6.304 1.00108.58 N ATOM 433 CA CYS 58 7.859 60.236 -5.181 1.00108.58 C ATOM 434 CB CYS 58 9.190 59.495 -5.401 1.00108.58 C ATOM 435 SG CYS 58 9.690 58.510 -3.958 1.00108.58 S ATOM 436 C CYS 58 8.059 61.178 -4.043 1.00108.58 C ATOM 437 O CYS 58 8.392 62.346 -4.241 1.00108.58 O ATOM 438 N LYS 59 7.830 60.693 -2.808 1.00273.81 N ATOM 439 CA LYS 59 8.030 61.541 -1.674 1.00273.81 C ATOM 440 CB LYS 59 6.758 61.800 -0.847 1.00273.81 C ATOM 441 CG LYS 59 7.013 62.713 0.355 1.00273.81 C ATOM 442 CD LYS 59 5.742 63.299 0.973 1.00273.81 C ATOM 443 CE LYS 59 5.307 62.603 2.264 1.00273.81 C ATOM 444 NZ LYS 59 4.810 61.241 1.970 1.00273.81 N ATOM 445 C LYS 59 8.993 60.852 -0.770 1.00273.81 C ATOM 446 O LYS 59 9.104 59.629 -0.775 1.00273.81 O ATOM 447 N GLY 60 9.741 61.642 0.022 1.00128.87 N ATOM 448 CA GLY 60 10.652 61.047 0.950 1.00128.87 C ATOM 449 C GLY 60 10.954 62.072 1.989 1.00128.87 C ATOM 450 O GLY 60 11.282 63.215 1.676 1.00128.87 O ATOM 451 N ARG 61 10.846 61.677 3.269 1.00232.32 N ATOM 452 CA ARG 61 11.157 62.588 4.328 1.00232.32 C ATOM 453 CB ARG 61 9.920 63.011 5.141 1.00232.32 C ATOM 454 CG ARG 61 8.856 63.715 4.295 1.00232.32 C ATOM 455 CD ARG 61 7.544 63.993 5.037 1.00232.32 C ATOM 456 NE ARG 61 7.758 65.166 5.930 1.00232.32 N ATOM 457 CZ ARG 61 6.806 66.141 6.015 1.00232.32 C ATOM 458 NH1 ARG 61 5.683 66.069 5.241 1.00232.32 N ATOM 459 NH2 ARG 61 6.977 67.189 6.871 1.00232.32 N ATOM 460 C ARG 61 12.075 61.858 5.247 1.00232.32 C ATOM 461 O ARG 61 11.756 60.765 5.713 1.00232.32 O ATOM 462 N CYS 62 13.262 62.430 5.519 1.00128.63 N ATOM 463 CA CYS 62 14.143 61.743 6.413 1.00128.63 C ATOM 464 CB CYS 62 14.891 60.575 5.747 1.00128.63 C ATOM 465 SG CYS 62 16.005 59.709 6.891 1.00128.63 S ATOM 466 C CYS 62 15.174 62.704 6.901 1.00128.63 C ATOM 467 O CYS 62 15.749 63.464 6.123 1.00128.63 O ATOM 468 N PHE 63 15.412 62.706 8.225 1.00299.39 N ATOM 469 CA PHE 63 16.449 63.520 8.783 1.00299.39 C ATOM 470 CB PHE 63 15.972 64.943 9.133 1.00299.39 C ATOM 471 CG PHE 63 17.161 65.826 9.308 1.00299.39 C ATOM 472 CD1 PHE 63 17.838 66.300 8.206 1.00299.39 C ATOM 473 CD2 PHE 63 17.582 66.208 10.560 1.00299.39 C ATOM 474 CE1 PHE 63 18.931 67.122 8.350 1.00299.39 C ATOM 475 CE2 PHE 63 18.674 67.031 10.710 1.00299.39 C ATOM 476 CZ PHE 63 19.352 67.488 9.606 1.00299.39 C ATOM 477 C PHE 63 16.858 62.822 10.040 1.00299.39 C ATOM 478 O PHE 63 16.016 62.277 10.751 1.00299.39 O ATOM 479 N GLU 64 18.170 62.792 10.347 1.00273.70 N ATOM 480 CA GLU 64 18.575 62.124 11.548 1.00273.70 C ATOM 481 CB GLU 64 19.265 60.769 11.311 1.00273.70 C ATOM 482 CG GLU 64 18.346 59.738 10.650 1.00273.70 C ATOM 483 CD GLU 64 19.128 58.444 10.464 1.00273.70 C ATOM 484 OE1 GLU 64 20.306 58.392 10.908 1.00273.70 O ATOM 485 OE2 GLU 64 18.552 57.488 9.879 1.00273.70 O ATOM 486 C GLU 64 19.540 63.011 12.259 1.00273.70 C ATOM 487 O GLU 64 20.256 63.792 11.634 1.00273.70 O ATOM 488 N LEU 65 19.561 62.932 13.603 1.00278.32 N ATOM 489 CA LEU 65 20.451 63.778 14.339 1.00278.32 C ATOM 490 CB LEU 65 19.690 64.898 15.074 1.00278.32 C ATOM 491 CG LEU 65 20.538 66.033 15.686 1.00278.32 C ATOM 492 CD1 LEU 65 19.620 67.055 16.374 1.00278.32 C ATOM 493 CD2 LEU 65 21.653 65.532 16.617 1.00278.32 C ATOM 494 C LEU 65 21.122 62.924 15.368 1.00278.32 C ATOM 495 O LEU 65 20.473 62.135 16.055 1.00278.32 O ATOM 496 N GLN 66 22.461 63.038 15.486 1.00277.43 N ATOM 497 CA GLN 66 23.119 62.301 16.522 1.00277.43 C ATOM 498 CB GLN 66 23.206 60.790 16.247 1.00277.43 C ATOM 499 CG GLN 66 23.907 60.006 17.358 1.00277.43 C ATOM 500 CD GLN 66 23.752 58.524 17.047 1.00277.43 C ATOM 501 OE1 GLN 66 23.226 58.151 15.999 1.00277.43 O ATOM 502 NE2 GLN 66 24.212 57.653 17.984 1.00277.43 N ATOM 503 C GLN 66 24.512 62.824 16.654 1.00277.43 C ATOM 504 O GLN 66 25.173 63.123 15.661 1.00277.43 O ATOM 505 N GLU 67 24.981 62.975 17.908 1.00246.72 N ATOM 506 CA GLU 67 26.327 63.411 18.137 1.00246.72 C ATOM 507 CB GLU 67 26.493 64.941 18.138 1.00246.72 C ATOM 508 CG GLU 67 26.121 65.615 16.814 1.00246.72 C ATOM 509 CD GLU 67 27.301 65.496 15.860 1.00246.72 C ATOM 510 OE1 GLU 67 27.692 64.344 15.537 1.00246.72 O ATOM 511 OE2 GLU 67 27.828 66.562 15.442 1.00246.72 O ATOM 512 C GLU 67 26.696 62.946 19.506 1.00246.72 C ATOM 513 O GLU 67 25.887 63.017 20.429 1.00246.72 O ATOM 514 N VAL 68 27.931 62.436 19.676 1.00116.67 N ATOM 515 CA VAL 68 28.342 62.028 20.985 1.00116.67 C ATOM 516 CB VAL 68 28.116 60.567 21.261 1.00116.67 C ATOM 517 CG1 VAL 68 26.609 60.274 21.146 1.00116.67 C ATOM 518 CG2 VAL 68 28.981 59.741 20.294 1.00116.67 C ATOM 519 C VAL 68 29.809 62.290 21.096 1.00116.67 C ATOM 520 O VAL 68 30.539 62.201 20.111 1.00116.67 O ATOM 521 N GLY 69 30.280 62.639 22.310 1.00 86.07 N ATOM 522 CA GLY 69 31.682 62.871 22.493 1.00 86.07 C ATOM 523 C GLY 69 31.950 62.830 23.961 1.00 86.07 C ATOM 524 O GLY 69 31.204 63.387 24.766 1.00 86.07 O ATOM 525 N PRO 70 33.014 62.167 24.319 1.00 76.33 N ATOM 526 CA PRO 70 33.366 62.082 25.708 1.00 76.33 C ATOM 527 CD PRO 70 33.407 60.974 23.588 1.00 76.33 C ATOM 528 CB PRO 70 34.273 60.855 25.857 1.00 76.33 C ATOM 529 CG PRO 70 34.546 60.369 24.419 1.00 76.33 C ATOM 530 C PRO 70 34.001 63.351 26.177 1.00 76.33 C ATOM 531 O PRO 70 34.623 64.044 25.374 1.00 76.33 O ATOM 532 N PRO 71 33.828 63.671 27.430 1.00 75.76 N ATOM 533 CA PRO 71 34.472 64.825 27.996 1.00 75.76 C ATOM 534 CD PRO 71 32.593 63.336 28.117 1.00 75.76 C ATOM 535 CB PRO 71 33.627 65.244 29.200 1.00 75.76 C ATOM 536 CG PRO 71 32.698 64.047 29.475 1.00 75.76 C ATOM 537 C PRO 71 35.880 64.463 28.343 1.00 75.76 C ATOM 538 O PRO 71 36.159 63.279 28.516 1.00 75.76 O ATOM 539 N ASP 72 36.783 65.456 28.435 1.00188.59 N ATOM 540 CA ASP 72 38.142 65.159 28.781 1.00188.59 C ATOM 541 CB ASP 72 39.134 65.449 27.640 1.00188.59 C ATOM 542 CG ASP 72 39.057 66.930 27.298 1.00188.59 C ATOM 543 OD1 ASP 72 37.941 67.394 26.932 1.00188.59 O ATOM 544 OD2 ASP 72 40.107 67.614 27.390 1.00188.59 O ATOM 545 C ASP 72 38.530 65.986 29.966 1.00188.59 C ATOM 546 O ASP 72 38.427 67.211 29.947 1.00188.59 O ATOM 547 N CYS 73 38.967 65.329 31.058 1.00111.70 N ATOM 548 CA CYS 73 39.387 66.100 32.190 1.00111.70 C ATOM 549 CB CYS 73 38.431 66.023 33.393 1.00111.70 C ATOM 550 SG CYS 73 38.244 64.331 34.028 1.00111.70 S ATOM 551 C CYS 73 40.700 65.562 32.647 1.00111.70 C ATOM 552 O CYS 73 40.872 64.353 32.799 1.00111.70 O ATOM 553 N ARG 74 41.673 66.464 32.869 1.00289.82 N ATOM 554 CA ARG 74 42.955 66.060 33.361 1.00289.82 C ATOM 555 CB ARG 74 44.134 66.447 32.450 1.00289.82 C ATOM 556 CG ARG 74 44.284 65.570 31.204 1.00289.82 C ATOM 557 CD ARG 74 45.064 64.274 31.447 1.00289.82 C ATOM 558 NE ARG 74 44.103 63.263 31.969 1.00289.82 N ATOM 559 CZ ARG 74 44.172 61.969 31.537 1.00289.82 C ATOM 560 NH1 ARG 74 45.114 61.602 30.619 1.00289.82 N ATOM 561 NH2 ARG 74 43.295 61.042 32.022 1.00289.82 N ATOM 562 C ARG 74 43.142 66.803 34.640 1.00289.82 C ATOM 563 O ARG 74 42.596 67.889 34.816 1.00289.82 O ATOM 564 N CYS 75 43.898 66.220 35.588 1.00101.68 N ATOM 565 CA CYS 75 44.094 66.909 36.826 1.00101.68 C ATOM 566 CB CYS 75 43.450 66.203 38.031 1.00101.68 C ATOM 567 SG CYS 75 44.127 64.539 38.301 1.00101.68 S ATOM 568 C CYS 75 45.558 66.962 37.096 1.00101.68 C ATOM 569 O CYS 75 46.315 66.089 36.671 1.00101.68 O ATOM 570 N ASP 76 46.000 68.026 37.791 1.00141.83 N ATOM 571 CA ASP 76 47.377 68.120 38.160 1.00141.83 C ATOM 572 CB ASP 76 48.063 69.380 37.604 1.00141.83 C ATOM 573 CG ASP 76 49.567 69.170 37.682 1.00141.83 C ATOM 574 OD1 ASP 76 50.079 68.976 38.817 1.00141.83 O ATOM 575 OD2 ASP 76 50.226 69.202 36.609 1.00141.83 O ATOM 576 C ASP 76 47.382 68.192 39.653 1.00141.83 C ATOM 577 O ASP 76 47.543 69.260 40.242 1.00141.83 O ATOM 578 N ASN 77 47.183 67.027 40.298 1.00102.35 N ATOM 579 CA ASN 77 47.098 66.939 41.725 1.00102.35 C ATOM 580 CB ASN 77 46.796 65.502 42.193 1.00102.35 C ATOM 581 CG ASN 77 46.407 65.487 43.669 1.00102.35 C ATOM 582 OD1 ASN 77 45.302 65.069 44.008 1.00102.35 O ATOM 583 ND2 ASN 77 47.325 65.928 44.570 1.00102.35 N ATOM 584 C ASN 77 48.407 67.328 42.323 1.00102.35 C ATOM 585 O ASN 77 48.463 68.123 43.261 1.00102.35 O ATOM 586 N LEU 78 49.509 66.792 41.776 1.00232.30 N ATOM 587 CA LEU 78 50.776 67.021 42.399 1.00232.30 C ATOM 588 CB LEU 78 51.910 66.135 41.850 1.00232.30 C ATOM 589 CG LEU 78 51.660 64.621 42.010 1.00232.30 C ATOM 590 CD1 LEU 78 50.398 64.163 41.262 1.00232.30 C ATOM 591 CD2 LEU 78 52.903 63.807 41.614 1.00232.30 C ATOM 592 C LEU 78 51.173 68.446 42.235 1.00232.30 C ATOM 593 O LEU 78 51.058 69.026 41.156 1.00232.30 O ATOM 594 N CYS 79 51.643 69.047 43.344 1.00112.24 N ATOM 595 CA CYS 79 52.122 70.396 43.349 1.00112.24 C ATOM 596 CB CYS 79 51.206 71.372 44.109 1.00112.24 C ATOM 597 SG CYS 79 50.758 70.781 45.769 1.00112.24 S ATOM 598 C CYS 79 53.460 70.348 44.013 1.00112.24 C ATOM 599 O CYS 79 53.770 69.394 44.723 1.00112.24 O ATOM 600 N LYS 80 54.303 71.374 43.787 1.00275.87 N ATOM 601 CA LYS 80 55.632 71.313 44.323 1.00275.87 C ATOM 602 CB LYS 80 56.701 71.786 43.322 1.00275.87 C ATOM 603 CG LYS 80 58.132 71.694 43.851 1.00275.87 C ATOM 604 CD LYS 80 58.613 70.257 44.053 1.00275.87 C ATOM 605 CE LYS 80 60.048 70.161 44.571 1.00275.87 C ATOM 606 NZ LYS 80 60.429 68.741 44.740 1.00275.87 N ATOM 607 C LYS 80 55.730 72.194 45.525 1.00275.87 C ATOM 608 O LYS 80 55.135 73.269 45.576 1.00275.87 O ATOM 609 N SER 81 56.478 71.722 46.542 1.00195.69 N ATOM 610 CA SER 81 56.710 72.494 47.727 1.00195.69 C ATOM 611 CB SER 81 55.743 72.164 48.879 1.00195.69 C ATOM 612 OG SER 81 56.039 72.968 50.012 1.00195.69 O ATOM 613 C SER 81 58.080 72.133 48.206 1.00195.69 C ATOM 614 O SER 81 58.499 70.983 48.091 1.00195.69 O ATOM 615 N TYR 82 58.832 73.118 48.733 1.00312.24 N ATOM 616 CA TYR 82 60.129 72.797 49.254 1.00312.24 C ATOM 617 CB TYR 82 61.292 73.253 48.356 1.00312.24 C ATOM 618 CG TYR 82 62.563 72.830 49.011 1.00312.24 C ATOM 619 CD1 TYR 82 63.022 71.542 48.856 1.00312.24 C ATOM 620 CD2 TYR 82 63.297 73.708 49.775 1.00312.24 C ATOM 621 CE1 TYR 82 64.192 71.131 49.450 1.00312.24 C ATOM 622 CE2 TYR 82 64.468 73.304 50.372 1.00312.24 C ATOM 623 CZ TYR 82 64.917 72.015 50.211 1.00312.24 C ATOM 624 OH TYR 82 66.120 71.601 50.823 1.00312.24 O ATOM 625 C TYR 82 60.258 73.527 50.551 1.00312.24 C ATOM 626 O TYR 82 59.768 74.646 50.691 1.00312.24 O ATOM 627 N SER 83 60.910 72.900 51.548 1.00222.54 N ATOM 628 CA SER 83 61.092 73.562 52.806 1.00222.54 C ATOM 629 CB SER 83 60.235 72.980 53.943 1.00222.54 C ATOM 630 OG SER 83 60.472 73.690 55.150 1.00222.54 O ATOM 631 C SER 83 62.523 73.381 53.188 1.00222.54 C ATOM 632 O SER 83 63.149 72.385 52.829 1.00222.54 O ATOM 633 N SER 84 63.089 74.365 53.913 1.00195.74 N ATOM 634 CA SER 84 64.457 74.243 54.317 1.00195.74 C ATOM 635 CB SER 84 65.448 74.817 53.291 1.00195.74 C ATOM 636 OG SER 84 66.780 74.662 53.758 1.00195.74 O ATOM 637 C SER 84 64.616 75.025 55.578 1.00195.74 C ATOM 638 O SER 84 63.768 75.847 55.921 1.00195.74 O ATOM 639 N CYS 85 65.710 74.761 56.321 1.00 83.74 N ATOM 640 CA CYS 85 65.949 75.481 57.535 1.00 83.74 C ATOM 641 CB CYS 85 65.404 74.761 58.783 1.00 83.74 C ATOM 642 SG CYS 85 65.706 75.678 60.323 1.00 83.74 S ATOM 643 C CYS 85 67.430 75.609 57.696 1.00 83.74 C ATOM 644 O CYS 85 68.199 74.884 57.065 1.00 83.74 O ATOM 645 N CYS 86 67.868 76.573 58.528 1.00 81.94 N ATOM 646 CA CYS 86 69.269 76.749 58.779 1.00 81.94 C ATOM 647 CB CYS 86 69.867 77.994 58.101 1.00 81.94 C ATOM 648 SG CYS 86 71.644 78.189 58.437 1.00 81.94 S ATOM 649 C CYS 86 69.433 76.939 60.250 1.00 81.94 C ATOM 650 O CYS 86 68.539 77.450 60.922 1.00 81.94 O ATOM 651 N HIS 87 70.584 76.497 60.797 1.00229.64 N ATOM 652 CA HIS 87 70.831 76.699 62.194 1.00229.64 C ATOM 653 ND1 HIS 87 69.905 76.127 65.380 1.00229.64 N ATOM 654 CG HIS 87 70.840 75.625 64.503 1.00229.64 C ATOM 655 CB HIS 87 70.593 75.431 63.036 1.00229.64 C ATOM 656 NE2 HIS 87 71.731 75.697 66.574 1.00229.64 N ATOM 657 CD2 HIS 87 71.950 75.367 65.249 1.00229.64 C ATOM 658 CE1 HIS 87 70.490 76.148 66.606 1.00229.64 C ATOM 659 C HIS 87 72.276 77.058 62.318 1.00229.64 C ATOM 660 O HIS 87 73.149 76.254 61.992 1.00229.64 O ATOM 661 N ASP 88 72.579 78.286 62.782 1.00235.29 N ATOM 662 CA ASP 88 73.962 78.646 62.896 1.00235.29 C ATOM 663 CB ASP 88 74.392 79.823 61.999 1.00235.29 C ATOM 664 CG ASP 88 73.650 81.071 62.456 1.00235.29 C ATOM 665 OD1 ASP 88 72.417 80.979 62.698 1.00235.29 O ATOM 666 OD2 ASP 88 74.314 82.133 62.589 1.00235.29 O ATOM 667 C ASP 88 74.223 79.084 64.299 1.00235.29 C ATOM 668 O ASP 88 73.438 79.824 64.889 1.00235.29 O ATOM 669 N PHE 89 75.332 78.601 64.888 1.00252.53 N ATOM 670 CA PHE 89 75.701 79.071 66.188 1.00252.53 C ATOM 671 CB PHE 89 75.807 77.972 67.259 1.00252.53 C ATOM 672 CG PHE 89 76.197 78.664 68.518 1.00252.53 C ATOM 673 CD1 PHE 89 75.253 79.293 69.296 1.00252.53 C ATOM 674 CD2 PHE 89 77.514 78.694 68.918 1.00252.53 C ATOM 675 CE1 PHE 89 75.614 79.935 70.456 1.00252.53 C ATOM 676 CE2 PHE 89 77.882 79.335 70.077 1.00252.53 C ATOM 677 CZ PHE 89 76.931 79.957 70.849 1.00252.53 C ATOM 678 C PHE 89 77.062 79.665 66.043 1.00252.53 C ATOM 679 O PHE 89 77.964 79.037 65.488 1.00252.53 O ATOM 680 N ASP 90 77.242 80.911 66.516 1.00297.70 N ATOM 681 CA ASP 90 78.528 81.535 66.409 1.00297.70 C ATOM 682 CB ASP 90 78.704 82.392 65.144 1.00297.70 C ATOM 683 CG ASP 90 77.671 83.511 65.167 1.00297.70 C ATOM 684 OD1 ASP 90 76.505 83.234 65.554 1.00297.70 O ATOM 685 OD2 ASP 90 78.031 84.656 64.784 1.00297.70 O ATOM 686 C ASP 90 78.707 82.430 67.588 1.00297.70 C ATOM 687 O ASP 90 77.744 82.993 68.105 1.00297.70 O ATOM 688 N GLU 91 79.959 82.558 68.067 1.00298.12 N ATOM 689 CA GLU 91 80.202 83.422 69.182 1.00298.12 C ATOM 690 CB GLU 91 80.232 82.666 70.518 1.00298.12 C ATOM 691 CG GLU 91 81.329 81.602 70.593 1.00298.12 C ATOM 692 CD GLU 91 81.192 80.890 71.930 1.00298.12 C ATOM 693 OE1 GLU 91 80.071 80.922 72.504 1.00298.12 O ATOM 694 OE2 GLU 91 82.205 80.299 72.393 1.00298.12 O ATOM 695 C GLU 91 81.529 84.080 68.973 1.00298.12 C ATOM 696 O GLU 91 82.460 83.469 68.449 1.00298.12 O ATOM 697 N LEU 92 81.638 85.367 69.361 1.00312.02 N ATOM 698 CA LEU 92 82.880 86.070 69.206 1.00312.02 C ATOM 699 CB LEU 92 82.764 87.290 68.263 1.00312.02 C ATOM 700 CG LEU 92 84.057 88.107 68.014 1.00312.02 C ATOM 701 CD1 LEU 92 84.562 88.846 69.265 1.00312.02 C ATOM 702 CD2 LEU 92 85.138 87.237 67.352 1.00312.02 C ATOM 703 C LEU 92 83.248 86.567 70.566 1.00312.02 C ATOM 704 O LEU 92 82.389 87.017 71.322 1.00312.02 O ATOM 705 N CYS 93 84.543 86.474 70.926 1.00118.88 N ATOM 706 CA CYS 93 84.960 86.966 72.205 1.00118.88 C ATOM 707 CB CYS 93 85.017 85.867 73.279 1.00118.88 C ATOM 708 SG CYS 93 85.550 86.487 74.903 1.00118.88 S ATOM 709 C CYS 93 86.348 87.498 72.051 1.00118.88 C ATOM 710 O CYS 93 87.248 86.777 71.628 1.00118.88 O ATOM 711 N LEU 94 86.566 88.787 72.377 1.00303.62 N ATOM 712 CA LEU 94 87.900 89.298 72.265 1.00303.62 C ATOM 713 CB LEU 94 88.139 90.172 71.025 1.00303.62 C ATOM 714 CG LEU 94 89.581 90.705 70.933 1.00303.62 C ATOM 715 CD1 LEU 94 90.604 89.562 70.850 1.00303.62 C ATOM 716 CD2 LEU 94 89.724 91.724 69.792 1.00303.62 C ATOM 717 C LEU 94 88.198 90.150 73.452 1.00303.62 C ATOM 718 O LEU 94 87.423 91.040 73.798 1.00303.62 O ATOM 719 N LYS 95 89.336 89.880 74.123 1.00228.42 N ATOM 720 CA LYS 95 89.749 90.703 75.222 1.00228.42 C ATOM 721 CB LYS 95 89.313 90.166 76.596 1.00228.42 C ATOM 722 CG LYS 95 89.759 91.054 77.762 1.00228.42 C ATOM 723 CD LYS 95 89.081 90.728 79.098 1.00228.42 C ATOM 724 CE LYS 95 87.643 91.239 79.215 1.00228.42 C ATOM 725 NZ LYS 95 87.083 90.874 80.537 1.00228.42 N ATOM 726 C LYS 95 91.244 90.711 75.220 1.00228.42 C ATOM 727 O LYS 95 91.873 89.668 75.390 1.00228.42 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 94.46 29.5 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 97.33 25.0 56 100.0 56 ARMSMC BURIED . . . . . . . . 86.71 40.9 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 98.18 27.8 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 97.84 28.6 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 98.19 24.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 98.15 36.4 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 85.27 39.1 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 73.35 47.1 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 91.93 38.9 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 54.94 40.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 60.70 22.2 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 61.73 25.0 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 66.74 14.3 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 31.50 50.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 67.06 20.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 67.06 20.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 72.69 25.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 36.73 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 33.53 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 33.53 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.8383 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 34.12 29 100.0 29 CRMSCA BURIED . . . . . . . . 31.91 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 33.32 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 33.85 142 100.0 142 CRMSMC BURIED . . . . . . . . 31.91 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 34.50 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 34.60 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 35.49 103 100.0 103 CRMSSC BURIED . . . . . . . . 31.83 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 33.93 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 34.71 219 100.0 219 CRMSALL BURIED . . . . . . . . 31.79 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 167.187 0.730 0.771 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 177.263 0.737 0.775 29 100.0 29 ERRCA BURIED . . . . . . . . 140.621 0.712 0.761 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 168.624 0.734 0.774 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 179.527 0.743 0.779 142 100.0 142 ERRMC BURIED . . . . . . . . 140.474 0.710 0.759 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 197.993 0.756 0.788 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 197.516 0.753 0.786 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 206.933 0.760 0.790 103 100.0 103 ERRSC BURIED . . . . . . . . 174.972 0.746 0.785 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 181.789 0.743 0.780 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 191.297 0.749 0.783 219 100.0 219 ERRALL BURIED . . . . . . . . 157.001 0.728 0.772 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 2 9 40 40 DISTCA CA (P) 0.00 0.00 2.50 5.00 22.50 40 DISTCA CA (RMS) 0.00 0.00 2.12 3.15 7.12 DISTCA ALL (N) 0 0 2 11 58 303 303 DISTALL ALL (P) 0.00 0.00 0.66 3.63 19.14 303 DISTALL ALL (RMS) 0.00 0.00 2.23 3.75 7.46 DISTALL END of the results output