####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 59 ( 236), selected 44 , name T0543TS328_1_3-D4 # Molecule2: number of CA atoms 312 ( 2539), selected 44 , name T0543-D4.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS328_1_3-D4.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 548 - 567 4.41 17.43 LONGEST_CONTINUOUS_SEGMENT: 20 549 - 568 4.50 17.80 LONGEST_CONTINUOUS_SEGMENT: 20 550 - 569 4.79 18.60 LONGEST_CONTINUOUS_SEGMENT: 20 554 - 580 4.85 20.33 LONGEST_CONTINUOUS_SEGMENT: 20 555 - 581 4.78 20.49 LCS_AVERAGE: 5.71 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 558 - 567 1.97 21.38 LONGEST_CONTINUOUS_SEGMENT: 10 559 - 568 1.89 22.65 LONGEST_CONTINUOUS_SEGMENT: 10 560 - 569 1.88 23.41 LCS_AVERAGE: 2.31 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 544 - 549 0.52 37.04 LCS_AVERAGE: 1.34 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 44 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT P 541 P 541 3 4 13 0 3 3 4 4 4 4 5 5 7 8 9 11 12 12 12 12 12 13 14 LCS_GDT T 542 T 542 3 5 13 2 3 3 4 5 7 8 11 11 11 11 11 11 12 12 13 13 13 13 14 LCS_GDT M 543 M 543 3 7 13 0 3 3 5 6 7 9 11 11 11 11 12 12 12 12 13 13 13 14 15 LCS_GDT P 544 P 544 6 7 13 4 6 6 6 6 7 9 11 11 11 11 12 12 12 12 13 14 15 16 20 LCS_GDT D 545 D 545 6 7 13 4 6 6 6 6 7 9 11 11 11 11 12 12 12 12 13 14 15 16 18 LCS_GDT E 546 E 546 6 7 13 4 6 6 6 6 7 9 11 11 11 11 12 12 15 16 16 18 18 19 20 LCS_GDT V 547 V 547 6 7 13 4 6 6 6 6 7 8 11 11 11 11 12 12 12 12 13 14 18 19 20 LCS_GDT S 548 S 548 6 7 20 3 6 6 6 6 7 9 11 11 11 11 14 16 18 19 20 22 22 23 24 LCS_GDT R 549 R 549 6 7 20 3 6 6 6 6 7 9 11 12 15 18 18 19 19 19 20 22 22 23 25 LCS_GDT P 550 P 550 3 7 20 3 3 4 5 6 7 9 11 15 17 18 18 19 19 20 20 22 22 23 25 LCS_GDT N 551 N 551 3 7 20 3 3 5 6 11 12 15 16 16 17 18 18 19 19 20 20 22 22 23 25 LCS_GDT Y 552 Y 552 4 8 20 4 4 6 7 11 12 15 16 16 17 18 18 19 19 20 20 22 22 23 25 LCS_GDT P 553 P 553 4 8 20 4 4 6 7 11 12 15 16 16 17 18 18 19 19 20 20 22 22 23 25 LCS_GDT G 554 G 554 4 8 20 4 4 6 7 11 12 15 16 16 17 18 18 19 19 20 20 22 22 23 25 LCS_GDT I 555 I 555 4 8 20 0 3 5 7 11 12 15 16 16 17 18 18 19 19 20 20 22 22 23 25 LCS_GDT M 556 M 556 4 8 20 0 4 5 6 11 12 15 16 16 17 18 18 19 19 20 20 22 22 23 25 LCS_GDT Y 557 Y 557 4 8 20 0 4 5 6 8 11 15 16 16 17 18 18 19 19 20 20 22 22 23 25 LCS_GDT L 558 L 558 5 10 20 4 5 5 6 8 12 12 16 16 17 18 18 19 19 20 20 22 22 23 25 LCS_GDT Q 559 Q 559 5 10 20 4 5 5 6 8 12 15 16 16 17 18 18 19 19 20 20 22 22 23 25 LCS_GDT S 560 S 560 5 10 20 4 5 6 8 11 12 15 16 16 17 18 18 19 19 20 20 22 22 23 25 LCS_GDT E 561 E 561 5 10 20 4 5 6 8 11 12 15 16 16 17 18 18 19 19 20 20 22 22 23 25 LCS_GDT F 562 F 562 5 10 20 4 5 6 8 9 12 15 16 16 17 18 18 19 19 20 20 22 22 23 25 LCS_GDT D 563 D 563 5 10 20 3 4 5 8 11 12 15 16 16 17 18 18 19 19 20 20 22 22 23 25 LCS_GDT L 564 L 564 4 10 20 3 4 6 8 11 12 15 16 16 17 18 18 19 19 20 20 22 22 23 25 LCS_GDT G 565 G 565 4 10 20 4 4 6 8 11 12 15 16 16 17 18 18 19 19 20 20 22 22 23 25 LCS_GDT C 566 C 566 4 10 20 3 4 6 8 10 12 15 16 16 17 18 18 19 19 20 20 22 22 23 25 LCS_GDT T 567 T 567 4 10 20 3 4 5 6 9 12 12 14 15 16 17 17 18 19 20 20 21 22 23 25 LCS_GDT C 568 C 568 4 10 20 3 4 5 6 9 12 12 14 15 16 17 17 18 19 19 20 21 22 23 25 LCS_GDT D 569 D 569 4 10 20 3 3 5 6 8 12 12 14 15 15 16 17 18 18 19 20 20 21 22 23 LCS_GDT K 577 K 577 3 3 20 0 3 3 3 3 6 7 10 11 15 15 16 16 18 19 19 19 20 20 21 LCS_GDT L 578 L 578 3 4 20 3 3 6 8 8 11 12 14 15 15 16 17 18 18 19 19 20 20 21 23 LCS_GDT E 579 E 579 3 4 20 3 3 3 5 9 9 9 10 15 15 16 17 18 19 20 20 21 22 23 25 LCS_GDT E 580 E 580 3 6 20 3 3 4 5 9 11 12 14 15 15 17 17 18 19 20 20 21 22 23 25 LCS_GDT L 581 L 581 5 6 20 5 5 5 5 6 7 9 10 11 13 14 15 15 15 16 18 19 20 23 25 LCS_GDT N 582 N 582 5 6 18 5 5 5 5 6 7 9 10 11 13 14 15 15 16 19 20 22 22 23 25 LCS_GDT K 583 K 583 5 6 15 5 5 5 5 6 7 9 10 11 13 15 18 19 19 19 20 22 22 23 25 LCS_GDT R 584 R 584 5 6 15 5 5 5 5 6 7 9 10 11 13 14 15 15 15 17 18 21 22 23 24 LCS_GDT L 585 L 585 5 6 15 5 5 5 5 6 7 9 10 11 13 14 15 15 16 17 19 22 22 23 24 LCS_GDT H 586 H 586 3 6 15 3 3 4 5 6 7 9 10 11 12 12 15 15 15 16 16 18 18 21 22 LCS_GDT T 587 T 587 3 6 15 3 3 4 4 6 7 9 10 11 13 14 15 15 15 16 16 18 18 19 20 LCS_GDT K 588 K 588 3 5 15 3 3 3 3 4 7 9 10 11 13 14 15 15 15 16 16 18 18 19 20 LCS_GDT G 589 G 589 3 5 15 3 3 3 3 6 7 9 10 11 13 14 15 15 15 16 16 18 18 19 20 LCS_GDT S 590 S 590 3 5 15 3 3 3 3 6 7 9 10 11 13 14 15 15 15 16 16 18 18 19 20 LCS_GDT T 591 T 591 3 3 15 0 3 3 3 6 7 9 10 11 13 14 15 15 15 15 15 18 18 19 20 LCS_AVERAGE LCS_A: 3.12 ( 1.34 2.31 5.71 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 6 6 8 11 12 15 16 16 17 18 18 19 19 20 20 22 22 23 25 GDT PERCENT_AT 1.60 1.92 1.92 2.56 3.53 3.85 4.81 5.13 5.13 5.45 5.77 5.77 6.09 6.09 6.41 6.41 7.05 7.05 7.37 8.01 GDT RMS_LOCAL 0.29 0.52 0.52 1.34 1.89 2.06 2.51 2.71 2.71 2.99 3.35 3.35 3.86 3.86 4.26 4.26 5.31 5.06 5.67 6.02 GDT RMS_ALL_AT 24.33 37.04 37.04 20.34 17.85 17.87 17.72 17.75 17.75 17.60 17.40 17.40 17.23 17.23 17.97 17.97 16.87 17.38 16.77 17.69 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA P 541 P 541 44.033 3 0.652 0.652 46.635 0.000 0.000 LGA T 542 T 542 41.114 3 0.663 0.663 42.333 0.000 0.000 LGA M 543 M 543 35.130 4 0.111 0.111 37.555 0.000 0.000 LGA P 544 P 544 29.921 3 0.531 0.531 31.412 0.000 0.000 LGA D 545 D 545 26.841 4 0.110 0.110 28.177 0.000 0.000 LGA E 546 E 546 19.192 5 0.105 0.105 22.091 0.000 0.000 LGA V 547 V 547 17.440 3 0.031 0.031 17.446 0.000 0.000 LGA S 548 S 548 10.540 2 0.578 0.578 12.833 2.500 1.667 LGA R 549 R 549 7.728 7 0.631 0.631 8.894 14.643 5.325 LGA P 550 P 550 6.158 3 0.490 0.490 7.053 18.929 10.816 LGA N 551 N 551 2.605 4 0.711 0.711 2.666 61.071 30.536 LGA Y 552 Y 552 1.953 8 0.370 0.370 1.953 77.262 25.754 LGA P 553 P 553 1.175 3 0.080 0.080 1.491 81.429 46.531 LGA G 554 G 554 1.696 0 0.646 0.646 3.932 65.595 65.595 LGA I 555 I 555 2.311 4 0.276 0.276 3.587 61.429 30.714 LGA M 556 M 556 2.520 4 0.411 0.411 5.429 54.286 27.143 LGA Y 557 Y 557 3.565 8 0.200 0.200 3.565 55.595 18.532 LGA L 558 L 558 4.517 4 0.662 0.662 4.517 43.810 21.905 LGA Q 559 Q 559 3.682 5 0.135 0.135 4.228 60.952 27.090 LGA S 560 S 560 2.213 2 0.028 0.028 3.102 63.095 42.063 LGA E 561 E 561 2.024 5 0.031 0.031 4.409 60.595 26.931 LGA F 562 F 562 3.598 7 0.364 0.364 3.598 53.690 19.524 LGA D 563 D 563 2.361 4 0.331 0.331 2.865 60.952 30.476 LGA L 564 L 564 2.709 4 0.534 0.534 5.093 49.524 24.762 LGA G 565 G 565 1.517 0 0.075 0.075 1.842 77.143 77.143 LGA C 566 C 566 2.614 2 0.029 0.029 6.208 43.333 28.889 LGA T 567 T 567 8.670 3 0.118 0.118 9.641 6.310 3.605 LGA C 568 C 568 13.293 2 0.502 0.502 14.612 0.000 0.000 LGA D 569 D 569 17.679 4 0.556 0.556 20.708 0.000 0.000 LGA K 577 K 577 20.507 5 0.408 0.408 20.507 0.000 0.000 LGA L 578 L 578 16.257 4 0.627 0.627 17.736 0.000 0.000 LGA E 579 E 579 10.296 5 0.015 0.015 12.668 5.000 2.222 LGA E 580 E 580 8.734 5 0.441 0.441 9.780 3.333 1.481 LGA L 581 L 581 12.321 4 0.648 0.648 12.807 0.000 0.000 LGA N 582 N 582 12.085 4 0.185 0.185 12.085 0.000 0.000 LGA K 583 K 583 9.742 5 0.018 0.018 11.514 0.119 0.053 LGA R 584 R 584 14.723 7 0.067 0.067 17.072 0.000 0.000 LGA L 585 L 585 13.828 4 0.257 0.257 14.571 0.000 0.000 LGA H 586 H 586 17.135 6 0.053 0.053 20.278 0.000 0.000 LGA T 587 T 587 23.274 3 0.362 0.362 24.834 0.000 0.000 LGA K 588 K 588 26.844 5 0.461 0.461 29.028 0.000 0.000 LGA G 589 G 589 30.740 0 0.609 0.609 32.321 0.000 0.000 LGA S 590 S 590 29.599 2 0.517 0.517 29.677 0.000 0.000 LGA T 591 T 591 27.877 3 0.060 0.060 28.295 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 44 176 176 100.00 345 176 51.01 312 SUMMARY(RMSD_GDC): 15.225 15.077 15.077 3.271 1.823 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 59 312 4.0 16 2.71 4.006 3.768 0.570 LGA_LOCAL RMSD: 2.707 Number of atoms: 16 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 17.751 Number of assigned atoms: 44 Std_ASGN_ATOMS RMSD: 15.225 Standard rmsd on all 44 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.208959 * X + 0.881278 * Y + 0.423893 * Z + -15.379738 Y_new = -0.943420 * X + 0.067538 * Y + 0.324650 * Z + -7.347438 Z_new = 0.257478 * X + -0.467748 * Y + 0.845528 * Z + 40.851624 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.352824 -0.260412 -0.505298 [DEG: -77.5111 -14.9205 -28.9515 ] ZXZ: 2.224382 0.563244 2.638393 [DEG: 127.4477 32.2715 151.1688 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS328_1_3-D4 REMARK 2: T0543-D4.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS328_1_3-D4.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 59 312 4.0 16 2.71 3.768 15.23 REMARK ---------------------------------------------------------- MOLECULE T0543TS328_1_3-D4 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 3 REMARK PFRMAT TS REMARK TARGET T0543 REMARK PARENT 2o6r_A ATOM 2161 N PRO 541 -12.567 11.182 50.759 1.00 9.00 N ATOM 2162 CA PRO 541 -12.761 11.447 49.356 1.00 9.00 C ATOM 2163 C PRO 541 -13.682 12.661 49.220 1.00 9.00 C ATOM 2164 O PRO 541 -13.717 13.304 48.174 1.00 9.00 O ATOM 2165 N THR 542 -14.422 12.958 50.289 1.00 3.00 N ATOM 2166 CA THR 542 -15.397 14.059 50.334 1.00 3.00 C ATOM 2167 C THR 542 -14.910 15.467 49.976 1.00 3.00 C ATOM 2168 O THR 542 -15.705 16.316 49.537 1.00 3.00 O ATOM 2169 N MET 543 -13.626 15.727 50.181 1.00 3.00 N ATOM 2170 CA MET 543 -13.069 17.034 49.854 1.00 3.00 C ATOM 2171 C MET 543 -11.795 16.907 49.044 1.00 3.00 C ATOM 2172 O MET 543 -11.177 15.841 49.007 1.00 3.00 O ATOM 2173 N PRO 544 -11.419 17.985 48.364 1.00 3.00 N ATOM 2174 CA PRO 544 -10.161 18.017 47.628 1.00 3.00 C ATOM 2175 C PRO 544 -10.386 17.141 46.387 1.00 3.00 C ATOM 2176 O PRO 544 -9.488 16.438 45.938 1.00 3.00 O ATOM 2177 N ASP 545 -11.582 17.125 45.892 1.00 3.00 N ATOM 2178 CA ASP 545 -11.974 16.427 44.669 1.00 3.00 C ATOM 2179 C ASP 545 -11.961 17.395 43.486 1.00 3.00 C ATOM 2180 O ASP 545 -12.696 18.375 43.571 1.00 3.00 O ATOM 2181 N GLU 546 -11.142 17.202 42.460 1.00 3.00 N ATOM 2182 CA GLU 546 -11.048 18.053 41.275 1.00 3.00 C ATOM 2183 C GLU 546 -12.273 17.789 40.384 1.00 3.00 C ATOM 2184 O GLU 546 -12.389 16.660 39.876 1.00 3.00 O ATOM 2185 N VAL 547 -13.130 18.807 40.255 1.00 3.00 N ATOM 2186 CA VAL 547 -14.391 18.665 39.524 1.00 3.00 C ATOM 2187 C VAL 547 -14.287 19.142 38.076 1.00 3.00 C ATOM 2188 O VAL 547 -14.898 18.592 37.145 1.00 3.00 O ATOM 2189 N SER 548 -13.482 20.170 37.868 1.00 3.00 N ATOM 2190 CA SER 548 -13.315 20.791 36.564 1.00 3.00 C ATOM 2191 C SER 548 -12.373 20.160 35.561 1.00 3.00 C ATOM 2192 O SER 548 -11.922 20.880 34.632 1.00 3.00 O ATOM 2193 N ARG 549 -12.051 18.863 35.638 1.00 3.00 N ATOM 2194 CA ARG 549 -11.144 18.288 34.657 1.00 3.00 C ATOM 2195 C ARG 549 -11.972 17.178 33.990 1.00 3.00 C ATOM 2196 O ARG 549 -11.780 16.899 32.802 1.00 3.00 O ATOM 2197 N PRO 550 -12.909 16.586 34.740 1.00 3.00 N ATOM 2198 CA PRO 550 -13.751 15.487 34.248 1.00 3.00 C ATOM 2199 C PRO 550 -15.052 15.951 33.583 1.00 3.00 C ATOM 2200 O PRO 550 -16.140 15.455 33.879 1.00 3.00 O ATOM 2201 N ASN 551 -14.923 16.899 32.667 1.00 3.00 N ATOM 2202 CA ASN 551 -16.060 17.482 31.982 1.00 3.00 C ATOM 2203 C ASN 551 -16.979 16.521 31.192 1.00 3.00 C ATOM 2204 O ASN 551 -18.079 16.911 30.817 1.00 3.00 O ATOM 2205 N TYR 552 -16.564 15.280 30.943 1.00 3.00 N ATOM 2206 CA TYR 552 -17.434 14.372 30.178 1.00 3.00 C ATOM 2207 C TYR 552 -18.172 13.397 31.077 1.00 3.00 C ATOM 2208 O TYR 552 -18.926 12.537 30.621 1.00 3.00 O ATOM 2209 N PRO 553 -17.966 13.566 32.368 1.00 3.00 N ATOM 2210 CA PRO 553 -18.601 12.723 33.359 1.00 3.00 C ATOM 2211 C PRO 553 -20.131 12.707 33.195 1.00 3.00 C ATOM 2212 O PRO 553 -20.800 13.753 33.144 1.00 3.00 O ATOM 2213 N GLY 554 -20.674 11.504 33.088 1.00 3.00 N ATOM 2214 CA GLY 554 -22.104 11.307 32.955 1.00 3.00 C ATOM 2215 C GLY 554 -22.630 10.625 34.218 1.00 3.00 C ATOM 2216 O GLY 554 -23.807 10.767 34.591 1.00 3.00 O ATOM 2217 N ILE 555 -21.748 9.893 34.882 1.00 3.00 N ATOM 2218 CA ILE 555 -22.108 9.185 36.099 1.00 3.00 C ATOM 2219 C ILE 555 -21.075 9.410 37.212 1.00 3.00 C ATOM 2220 O ILE 555 -19.877 9.114 37.048 1.00 3.00 O ATOM 2221 N MET 556 -21.527 9.945 38.337 1.00 3.00 N ATOM 2222 CA MET 556 -20.641 10.166 39.483 1.00 3.00 C ATOM 2223 C MET 556 -20.416 10.589 40.922 1.00 3.00 C ATOM 2224 O MET 556 -19.305 10.984 41.284 1.00 3.00 O ATOM 2225 N TYR 557 -21.452 10.510 41.753 1.00 3.00 N ATOM 2226 CA TYR 557 -21.329 10.890 43.159 1.00 3.00 C ATOM 2227 C TYR 557 -20.807 9.714 43.967 1.00 3.00 C ATOM 2228 O TYR 557 -21.498 8.699 44.104 1.00 3.00 O ATOM 2229 N LEU 558 -19.611 9.832 44.531 1.00 3.00 N ATOM 2230 CA LEU 558 -19.043 8.728 45.303 1.00 3.00 C ATOM 2231 C LEU 558 -19.341 8.807 46.797 1.00 3.00 C ATOM 2232 O LEU 558 -18.946 7.923 47.566 1.00 3.00 O ATOM 2233 N GLN 559 -20.060 9.850 47.218 1.00 9.00 N ATOM 2234 CA GLN 559 -20.428 10.004 48.621 1.00 9.00 C ATOM 2235 C GLN 559 -21.368 8.872 49.051 1.00 9.00 C ATOM 2236 O GLN 559 -21.503 8.583 50.242 1.00 9.00 O ATOM 2237 N SER 560 -22.016 8.242 48.079 1.00 3.00 N ATOM 2238 CA SER 560 -22.942 7.145 48.345 1.00 3.00 C ATOM 2239 C SER 560 -22.242 5.932 48.947 1.00 3.00 C ATOM 2240 O SER 560 -22.895 5.048 49.508 1.00 3.00 O ATOM 2241 N GLU 561 -20.916 5.893 48.842 1.00 3.00 N ATOM 2242 CA GLU 561 -20.148 4.776 49.386 1.00 3.00 C ATOM 2243 C GLU 561 -19.479 5.096 50.720 1.00 3.00 C ATOM 2244 O GLU 561 -19.058 4.187 51.436 1.00 3.00 O ATOM 2245 N PHE 562 -19.386 6.384 51.055 1.00 3.00 N ATOM 2246 CA PHE 562 -18.729 6.791 52.298 1.00 3.00 C ATOM 2247 C PHE 562 -18.978 7.485 53.619 1.00 3.00 C ATOM 2248 O PHE 562 -19.981 7.177 54.282 1.00 3.00 O ATOM 2249 N ASP 563 -18.100 8.415 53.992 1.00 3.00 N ATOM 2250 CA ASP 563 -18.227 9.146 55.260 1.00 3.00 C ATOM 2251 C ASP 563 -18.120 10.675 55.063 1.00 3.00 C ATOM 2252 O ASP 563 -17.633 11.396 55.938 1.00 3.00 O ATOM 2253 N LEU 564 -18.567 11.167 53.915 1.00 3.00 N ATOM 2254 CA LEU 564 -18.480 12.584 53.635 1.00 3.00 C ATOM 2255 C LEU 564 -19.184 13.470 54.669 1.00 3.00 C ATOM 2256 O LEU 564 -20.379 13.298 54.959 1.00 3.00 O ATOM 2257 N GLY 565 -18.444 14.428 55.216 1.00 3.00 N ATOM 2258 CA GLY 565 -19.011 15.337 56.203 1.00 3.00 C ATOM 2259 C GLY 565 -19.300 16.699 55.600 1.00 3.00 C ATOM 2260 O GLY 565 -19.865 17.553 56.246 1.00 3.00 O ATOM 2261 N CYS 566 -18.906 16.909 54.356 1.00 3.00 N ATOM 2262 CA CYS 566 -19.181 18.179 53.704 1.00 3.00 C ATOM 2263 C CYS 566 -18.732 18.150 52.247 1.00 3.00 C ATOM 2264 O CYS 566 -17.961 17.292 51.840 1.00 3.00 O ATOM 2265 N THR 567 -19.222 19.092 51.461 1.00 3.00 N ATOM 2266 CA THR 567 -18.848 19.173 50.060 1.00 3.00 C ATOM 2267 C THR 567 -18.201 20.534 49.766 1.00 3.00 C ATOM 2268 O THR 567 -18.663 21.569 50.245 1.00 3.00 O ATOM 2269 N CYS 568 -17.116 20.548 48.981 1.00 3.00 N ATOM 2270 CA CYS 568 -16.449 21.821 48.656 1.00 3.00 C ATOM 2271 C CYS 568 -17.356 22.693 47.788 1.00 3.00 C ATOM 2272 O CYS 568 -18.133 22.182 46.979 1.00 3.00 O ATOM 2273 N ASP 569 -17.264 24.008 47.976 1.00 3.00 N ATOM 2274 CA ASP 569 -18.052 24.970 47.191 1.00 3.00 C ATOM 2275 C ASP 569 -17.894 24.662 45.718 1.00 3.00 C ATOM 2276 O ASP 569 -16.777 24.489 45.241 1.00 3.00 O ATOM 2277 N ASP 570 -19.007 24.611 44.997 1.00 3.00 N ATOM 2278 CA ASP 570 -18.958 24.331 43.573 1.00 3.00 C ATOM 2279 C ASP 570 -18.183 23.121 43.072 1.00 3.00 C ATOM 2280 O ASP 570 -17.723 23.145 41.939 1.00 3.00 O ATOM 2281 N LYS 571 -18.045 22.062 43.854 1.00 3.00 N ATOM 2282 CA LYS 571 -17.299 20.903 43.354 1.00 3.00 C ATOM 2283 C LYS 571 -17.863 20.236 42.136 1.00 3.00 C ATOM 2284 O LYS 571 -17.152 19.489 41.477 1.00 3.00 O ATOM 2285 N VAL 572 -19.136 20.465 41.855 1.00 3.00 N ATOM 2286 CA VAL 572 -19.779 19.845 40.693 1.00 3.00 C ATOM 2287 C VAL 572 -20.000 20.832 39.540 1.00 3.00 C ATOM 2288 O VAL 572 -20.603 20.472 38.523 1.00 3.00 O ATOM 2289 N GLU 573 -19.516 22.064 39.687 1.00 3.00 N ATOM 2290 CA GLU 573 -19.741 23.087 38.660 1.00 3.00 C ATOM 2291 C GLU 573 -19.328 22.807 37.216 1.00 3.00 C ATOM 2292 O GLU 573 -20.027 23.227 36.298 1.00 3.00 O ATOM 2293 N PRO 574 -18.235 22.098 36.982 1.00 3.00 N ATOM 2294 CA PRO 574 -17.839 21.871 35.595 1.00 3.00 C ATOM 2295 C PRO 574 -18.489 20.664 34.925 1.00 3.00 C ATOM 2296 O PRO 574 -18.189 20.366 33.763 1.00 3.00 O ATOM 2297 N LYS 575 -19.390 19.988 35.640 1.00 3.00 N ATOM 2298 CA LYS 575 -20.017 18.760 35.127 1.00 3.00 C ATOM 2299 C LYS 575 -21.338 18.932 34.386 1.00 3.00 C ATOM 2300 O LYS 575 -22.323 18.262 34.681 1.00 3.00 O ATOM 2301 N ASN 576 -21.344 19.808 33.392 1.00 3.00 N ATOM 2302 CA ASN 576 -22.542 20.074 32.638 1.00 3.00 C ATOM 2303 C ASN 576 -23.207 18.887 31.970 1.00 3.00 C ATOM 2304 O ASN 576 -24.329 19.031 31.521 1.00 3.00 O ATOM 2305 N LYS 577 -22.556 17.733 31.888 1.00 3.00 N ATOM 2306 CA LYS 577 -23.189 16.555 31.246 1.00 3.00 C ATOM 2307 C LYS 577 -23.613 15.483 32.232 1.00 3.00 C ATOM 2308 O LYS 577 -24.190 14.479 31.851 1.00 3.00 O ATOM 2309 N LEU 578 -23.312 15.684 33.507 1.00 3.00 N ATOM 2310 CA LEU 578 -23.653 14.708 34.536 1.00 3.00 C ATOM 2311 C LEU 578 -25.150 14.386 34.537 1.00 3.00 C ATOM 2312 O LEU 578 -25.987 15.295 34.611 1.00 3.00 O ATOM 2313 N GLU 579 -25.469 13.095 34.457 1.00 3.00 N ATOM 2314 CA GLU 579 -26.839 12.602 34.475 1.00 3.00 C ATOM 2315 C GLU 579 -27.183 11.996 35.824 1.00 3.00 C ATOM 2316 O GLU 579 -28.334 12.090 36.271 1.00 3.00 O ATOM 2317 N GLU 580 -26.198 11.329 36.434 1.00 3.00 N ATOM 2318 CA GLU 580 -26.367 10.678 37.745 1.00 3.00 C ATOM 2319 C GLU 580 -26.011 9.906 39.010 1.00 3.00 C ATOM 2320 O GLU 580 -26.755 9.013 39.414 1.00 3.00 O ATOM 2321 N LEU 581 -24.882 10.244 39.635 1.00 3.00 N ATOM 2322 CA LEU 581 -24.453 9.499 40.822 1.00 3.00 C ATOM 2323 C LEU 581 -24.906 9.999 42.190 1.00 3.00 C ATOM 2324 O LEU 581 -25.174 11.175 42.399 1.00 3.00 O ATOM 2325 N ASN 582 -25.007 9.054 43.127 1.00 3.00 N ATOM 2326 CA ASN 582 -25.420 9.310 44.504 1.00 3.00 C ATOM 2327 C ASN 582 -26.588 10.256 44.576 1.00 3.00 C ATOM 2328 O ASN 582 -26.536 11.246 45.291 1.00 3.00 O ATOM 2329 N LYS 583 -27.654 9.966 43.844 1.00 9.00 N ATOM 2330 CA LYS 583 -28.833 10.820 43.867 1.00 9.00 C ATOM 2331 C LYS 583 -29.390 10.969 45.293 1.00 9.00 C ATOM 2332 O LYS 583 -29.830 12.032 45.682 1.00 9.00 O ATOM 2333 N ARG 584 -29.342 9.905 46.078 1.00 9.00 N ATOM 2334 CA ARG 584 -29.846 9.975 47.434 1.00 9.00 C ATOM 2335 C ARG 584 -28.821 10.274 48.519 1.00 9.00 C ATOM 2336 O ARG 584 -28.981 9.857 49.660 1.00 9.00 O ATOM 2337 N LEU 585 -27.768 11.001 48.174 1.00 3.00 N ATOM 2338 CA LEU 585 -26.760 11.318 49.176 1.00 3.00 C ATOM 2339 C LEU 585 -25.657 10.288 49.204 1.00 3.00 C ATOM 2340 O LEU 585 -25.485 9.552 48.246 1.00 3.00 O ATOM 2341 N HIS 586 -24.905 10.229 50.292 1.00 3.00 N ATOM 2342 CA HIS 586 -23.845 9.252 50.340 1.00 3.00 C ATOM 2343 C HIS 586 -23.968 8.175 51.391 1.00 3.00 C ATOM 2344 O HIS 586 -22.988 7.513 51.709 1.00 3.00 O ATOM 2345 N THR 587 -25.174 7.996 51.901 1.00 3.00 N ATOM 2346 CA THR 587 -25.423 6.954 52.884 1.00 3.00 C ATOM 2347 C THR 587 -24.025 7.539 53.171 1.00 3.00 C ATOM 2348 O THR 587 -22.986 6.914 52.899 1.00 3.00 O ATOM 2349 N LYS 588 -24.014 8.752 53.705 1.00 3.00 N ATOM 2350 CA LYS 588 -22.777 9.436 54.049 1.00 3.00 C ATOM 2351 C LYS 588 -23.058 10.108 55.376 1.00 3.00 C ATOM 2352 O LYS 588 -23.983 9.694 56.091 1.00 3.00 O ATOM 2353 N GLY 589 -22.305 11.147 55.717 1.00 3.00 N ATOM 2354 CA GLY 589 -22.564 11.848 56.984 1.00 3.00 C ATOM 2355 C GLY 589 -22.764 13.336 56.728 1.00 3.00 C ATOM 2356 O GLY 589 -22.265 14.190 57.469 1.00 3.00 O ATOM 2357 N SER 590 -23.518 13.646 55.678 1.00 3.00 N ATOM 2358 CA SER 590 -23.755 15.036 55.314 1.00 3.00 C ATOM 2359 C SER 590 -24.865 15.688 56.112 1.00 3.00 C ATOM 2360 O SER 590 -25.967 15.151 56.223 1.00 3.00 O ATOM 2361 N THR 591 -24.559 16.857 56.667 1.00 3.00 N ATOM 2362 CA THR 591 -25.539 17.620 57.431 1.00 3.00 C ATOM 2363 C THR 591 -26.113 18.721 56.546 1.00 3.00 C ATOM 2364 O THR 591 -27.268 19.125 56.700 1.00 3.00 O ATOM 2365 N GLU 592 -25.312 19.183 55.601 1.00 3.00 N ATOM 2366 CA GLU 592 -25.729 20.260 54.710 1.00 3.00 C ATOM 2367 C GLU 592 -24.873 20.251 53.444 1.00 3.00 C ATOM 2368 O GLU 592 -23.904 19.499 53.343 1.00 3.00 O ATOM 2369 N ALA 593 -25.226 21.097 52.488 1.00 3.00 N ATOM 2370 CA ALA 593 -24.458 21.224 51.254 1.00 3.00 C ATOM 2371 C ALA 593 -24.319 22.714 51.003 1.00 3.00 C ATOM 2372 O ALA 593 -25.098 23.507 51.520 1.00 3.00 O ATOM 2373 N GLU 594 -23.288 23.127 50.252 1.00 3.00 N ATOM 2374 CA GLU 594 -23.135 24.570 49.975 1.00 3.00 C ATOM 2375 C GLU 594 -24.323 25.089 49.131 1.00 3.00 C ATOM 2376 O GLU 594 -24.897 24.345 48.336 1.00 3.00 O ATOM 2377 N THR 595 -24.690 26.352 49.300 1.00 3.00 N ATOM 2378 CA THR 595 -25.793 26.926 48.537 1.00 3.00 C ATOM 2379 C THR 595 -25.470 26.840 47.035 1.00 3.00 C ATOM 2380 O THR 595 -24.324 27.028 46.621 1.00 3.00 O ATOM 2381 N GLY 596 -26.485 26.550 46.224 1.00 3.00 N ATOM 2382 CA GLY 596 -26.303 26.458 44.780 1.00 3.00 C ATOM 2383 C GLY 596 -25.384 25.356 44.276 1.00 3.00 C ATOM 2384 O GLY 596 -24.884 25.418 43.158 1.00 3.00 O ATOM 2385 N LYS 597 -25.173 24.326 45.081 1.00 3.00 N ATOM 2386 CA LYS 597 -24.278 23.234 44.706 1.00 3.00 C ATOM 2387 C LYS 597 -24.703 22.409 43.479 1.00 3.00 C ATOM 2388 O LYS 597 -23.867 21.811 42.817 1.00 3.00 O ATOM 2389 N PHE 598 -25.993 22.375 43.175 1.00 3.00 N ATOM 2390 CA PHE 598 -26.464 21.596 42.039 1.00 3.00 C ATOM 2391 C PHE 598 -26.924 22.454 40.857 1.00 3.00 C ATOM 2392 O PHE 598 -27.297 21.915 39.815 1.00 3.00 O ATOM 2393 N ARG 599 -26.901 23.775 41.011 1.00 3.00 N ATOM 2394 CA ARG 599 -27.362 24.682 39.951 1.00 3.00 C ATOM 2395 C ARG 599 -26.799 24.506 38.538 1.00 3.00 C ATOM 2396 O ARG 599 -27.536 24.653 37.575 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 176 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 89.24 43.1 72 11.6 619 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 219 ARMSMC SURFACE . . . . . . . . 91.87 41.9 62 20.3 305 ARMSMC BURIED . . . . . . . . 70.82 50.0 10 3.2 314 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 269 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 251 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 95 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 138 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 131 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 153 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 120 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 52 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 78 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 75 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 46 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 37 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 17 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 8 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 3 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 15.23 (Number of atoms: 44) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 15.23 44 14.1 312 CRMSCA CRN = ALL/NP . . . . . 0.3460 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 111 CRMSCA SURFACE . . . . . . . . 16.12 36 23.2 155 CRMSCA BURIED . . . . . . . . 10.31 8 5.1 157 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 15.08 176 11.4 1547 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 552 CRMSMC SURFACE . . . . . . . . 15.92 144 18.7 769 CRMSMC BURIED . . . . . . . . 10.47 32 4.1 778 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 1291 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 1131 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 469 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 642 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 649 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 15.08 176 6.9 2539 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 913 CRMSALL SURFACE . . . . . . . . 15.92 144 11.4 1262 CRMSALL BURIED . . . . . . . . 10.47 32 2.5 1277 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.192 0.550 0.277 44 14.1 312 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 111 ERRCA SURFACE . . . . . . . . 10.951 0.560 0.282 36 23.2 155 ERRCA BURIED . . . . . . . . 6.773 0.504 0.252 8 5.1 157 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.064 0.547 0.274 176 11.4 1547 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 552 ERRMC SURFACE . . . . . . . . 10.756 0.555 0.278 144 18.7 769 ERRMC BURIED . . . . . . . . 6.950 0.512 0.256 32 4.1 778 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 1291 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 1131 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 469 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 642 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 649 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.064 0.547 0.274 176 6.9 2539 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 913 ERRALL SURFACE . . . . . . . . 10.756 0.555 0.278 144 11.4 1262 ERRALL BURIED . . . . . . . . 6.950 0.512 0.256 32 2.5 1277 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 0 19 44 312 DISTCA CA (P) 0.00 0.00 0.00 0.00 6.09 312 DISTCA CA (RMS) 0.00 0.00 0.00 0.00 7.94 DISTCA ALL (N) 0 0 0 1 78 176 2539 DISTALL ALL (P) 0.00 0.00 0.00 0.04 3.07 2539 DISTALL ALL (RMS) 0.00 0.00 0.00 4.92 7.88 DISTALL END of the results output