####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 63 ( 252), selected 49 , name T0543TS328_1_3 # Molecule2: number of CA atoms 784 ( 6318), selected 49 , name T0543.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS328_1_3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 548 - 567 4.40 23.33 LONGEST_CONTINUOUS_SEGMENT: 20 549 - 568 4.51 23.64 LONGEST_CONTINUOUS_SEGMENT: 20 550 - 569 4.88 24.27 LONGEST_CONTINUOUS_SEGMENT: 20 554 - 580 4.82 24.89 LONGEST_CONTINUOUS_SEGMENT: 20 555 - 581 4.78 24.89 LCS_AVERAGE: 2.27 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 558 - 567 1.95 25.39 LONGEST_CONTINUOUS_SEGMENT: 10 559 - 568 1.89 26.32 LONGEST_CONTINUOUS_SEGMENT: 10 560 - 569 1.92 27.11 LCS_AVERAGE: 0.88 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 544 - 549 0.50 35.76 LCS_AVERAGE: 0.52 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 49 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT N 537 N 537 3 4 13 0 3 3 4 4 6 7 8 8 8 10 10 10 10 12 13 13 15 16 16 LCS_GDT T 538 T 538 3 4 14 3 3 3 4 4 6 7 8 11 11 11 12 12 12 12 14 15 15 16 16 LCS_GDT F 539 F 539 3 4 14 3 3 3 4 4 6 7 9 11 11 11 12 12 14 14 14 15 15 16 16 LCS_GDT R 540 R 540 3 4 14 3 3 3 4 4 5 7 9 11 11 13 13 13 14 14 14 15 15 16 16 LCS_GDT P 541 P 541 3 4 14 0 3 3 4 4 6 7 9 11 11 13 13 13 14 14 14 15 15 16 16 LCS_GDT T 542 T 542 3 5 14 0 3 3 4 5 7 8 11 11 11 13 13 13 14 14 14 15 15 16 16 LCS_GDT M 543 M 543 3 7 14 0 3 3 5 6 7 9 11 11 11 13 13 13 14 14 14 15 15 16 16 LCS_GDT P 544 P 544 6 7 14 4 6 6 6 6 7 9 11 11 11 13 13 13 14 14 14 15 15 19 21 LCS_GDT D 545 D 545 6 7 14 4 6 6 6 6 7 9 11 11 11 13 13 13 14 14 14 15 15 16 21 LCS_GDT E 546 E 546 6 7 14 4 6 6 6 6 7 9 11 11 11 13 13 13 14 15 17 19 19 20 21 LCS_GDT V 547 V 547 6 7 14 4 6 6 6 6 7 8 11 11 11 13 13 13 14 14 14 15 16 20 21 LCS_GDT S 548 S 548 6 7 20 4 6 6 6 6 7 9 11 11 11 13 14 16 18 19 20 21 23 23 24 LCS_GDT R 549 R 549 6 7 20 3 6 6 6 6 7 9 11 13 15 18 18 19 19 20 20 21 23 23 25 LCS_GDT P 550 P 550 3 7 20 3 3 4 5 6 7 9 11 16 17 18 18 19 19 20 20 21 23 23 25 LCS_GDT N 551 N 551 3 7 20 3 3 5 6 11 12 15 15 16 17 18 18 19 19 20 20 21 23 23 25 LCS_GDT Y 552 Y 552 4 8 20 4 4 6 8 11 12 15 15 16 17 18 18 19 19 20 20 21 23 23 25 LCS_GDT P 553 P 553 4 8 20 4 4 6 8 11 12 15 15 16 17 18 18 19 19 20 20 21 23 23 25 LCS_GDT G 554 G 554 4 8 20 4 4 6 8 11 12 15 15 16 17 18 18 19 19 20 20 21 23 23 25 LCS_GDT I 555 I 555 4 8 20 0 3 5 8 11 12 15 15 16 17 18 18 19 19 20 20 21 23 23 25 LCS_GDT M 556 M 556 4 8 20 0 4 5 6 11 12 15 15 16 17 18 18 19 19 20 20 21 23 23 25 LCS_GDT Y 557 Y 557 4 8 20 0 4 5 6 8 11 15 15 16 17 18 18 19 19 20 20 21 23 23 25 LCS_GDT L 558 L 558 5 10 20 5 5 5 6 7 12 12 14 16 17 18 18 19 19 20 20 21 23 23 25 LCS_GDT Q 559 Q 559 5 10 20 5 5 5 6 8 12 15 15 16 17 18 18 19 19 20 20 21 23 23 25 LCS_GDT S 560 S 560 5 10 20 5 5 5 8 11 12 15 15 16 17 18 18 19 19 20 20 21 23 23 25 LCS_GDT E 561 E 561 5 10 20 5 5 6 8 11 12 15 15 16 17 18 18 19 19 20 20 21 23 23 25 LCS_GDT F 562 F 562 5 10 20 5 5 5 8 9 12 15 15 16 17 18 18 19 19 20 20 21 23 23 25 LCS_GDT D 563 D 563 5 10 20 3 4 5 8 11 12 15 15 16 17 18 18 19 19 20 20 21 23 23 25 LCS_GDT L 564 L 564 4 10 20 3 4 6 8 11 12 15 15 16 17 18 18 19 19 20 20 21 23 23 25 LCS_GDT G 565 G 565 4 10 20 4 4 6 8 11 12 15 15 16 17 18 18 19 19 20 20 21 23 23 25 LCS_GDT C 566 C 566 4 10 20 3 4 5 8 10 12 15 15 16 17 18 18 19 19 20 20 21 23 23 25 LCS_GDT T 567 T 567 4 10 20 3 4 5 6 8 12 12 13 14 16 17 17 18 19 20 20 21 22 23 25 LCS_GDT C 568 C 568 4 10 20 3 4 5 6 8 12 12 13 14 16 17 17 18 19 19 19 21 22 23 25 LCS_GDT D 569 D 569 4 10 20 3 3 5 6 8 12 12 13 14 15 16 17 18 18 19 19 20 20 22 23 LCS_GDT K 577 K 577 3 4 20 0 3 3 3 3 6 7 9 13 15 16 16 16 18 19 19 19 20 20 21 LCS_GDT L 578 L 578 3 4 20 3 3 3 8 8 10 12 13 14 15 16 17 18 18 19 19 20 20 21 23 LCS_GDT E 579 E 579 3 4 20 3 3 3 5 9 9 10 10 14 15 16 17 18 19 20 20 21 22 23 25 LCS_GDT E 580 E 580 3 6 20 3 3 4 5 9 10 12 13 14 15 17 17 18 19 20 20 21 22 23 25 LCS_GDT L 581 L 581 5 6 20 5 5 5 5 6 8 9 10 11 13 14 15 16 16 16 18 19 20 22 25 LCS_GDT N 582 N 582 5 6 18 5 5 5 5 6 8 9 10 11 13 14 15 16 16 20 20 21 23 23 25 LCS_GDT K 583 K 583 5 6 16 5 5 5 5 6 7 8 9 11 13 15 18 19 19 20 20 21 23 23 25 LCS_GDT R 584 R 584 5 6 16 5 5 5 5 6 7 8 9 11 13 14 15 16 17 18 19 21 23 23 24 LCS_GDT L 585 L 585 5 6 16 5 5 5 5 6 8 9 10 11 13 14 15 16 17 18 19 21 23 23 24 LCS_GDT H 586 H 586 4 6 16 3 3 4 4 6 7 9 10 11 12 12 15 16 16 16 17 19 20 22 22 LCS_GDT T 587 T 587 4 6 16 3 3 4 4 6 7 9 10 11 13 14 15 16 16 16 17 19 19 20 21 LCS_GDT K 588 K 588 3 5 16 3 3 3 3 4 7 9 10 11 13 14 15 16 16 16 17 19 19 20 21 LCS_GDT G 589 G 589 3 5 16 3 3 3 4 5 8 9 10 11 13 14 15 16 16 16 17 19 19 20 21 LCS_GDT S 590 S 590 3 5 16 3 3 3 4 6 8 9 10 11 13 14 15 16 16 16 17 19 19 20 21 LCS_GDT T 591 T 591 3 4 16 3 3 3 4 6 8 9 10 11 13 14 15 16 16 16 17 19 19 20 21 LCS_GDT E 592 E 592 3 4 16 3 3 3 4 4 4 5 7 8 12 13 15 16 16 16 16 19 19 20 21 LCS_AVERAGE LCS_A: 1.22 ( 0.52 0.88 2.27 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 6 6 8 11 12 15 15 16 17 18 18 19 19 20 20 21 23 23 25 GDT PERCENT_AT 0.64 0.77 0.77 1.02 1.40 1.53 1.91 1.91 2.04 2.17 2.30 2.30 2.42 2.42 2.55 2.55 2.68 2.93 2.93 3.19 GDT RMS_LOCAL 0.30 0.50 0.50 1.33 1.91 2.06 2.49 2.49 2.70 2.98 3.34 3.34 3.85 3.85 4.23 4.15 4.50 5.68 5.68 6.03 GDT RMS_ALL_AT 27.33 35.76 35.76 23.57 23.72 23.76 23.62 23.62 23.71 23.50 23.26 23.26 23.12 23.12 23.86 23.53 23.66 22.70 22.70 23.71 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA N 537 N 537 60.853 4 0.280 0.280 62.183 0.000 0.000 LGA T 538 T 538 60.628 3 0.298 0.298 60.628 0.000 0.000 LGA F 539 F 539 54.461 7 0.645 0.645 56.550 0.000 0.000 LGA R 540 R 540 49.762 7 0.600 0.600 51.665 0.000 0.000 LGA P 541 P 541 43.574 3 0.657 0.657 46.180 0.000 0.000 LGA T 542 T 542 40.822 3 0.693 0.693 41.938 0.000 0.000 LGA M 543 M 543 34.841 4 0.113 0.113 37.291 0.000 0.000 LGA P 544 P 544 29.580 3 0.512 0.512 31.090 0.000 0.000 LGA D 545 D 545 26.584 4 0.083 0.083 27.995 0.000 0.000 LGA E 546 E 546 18.918 5 0.098 0.098 21.828 0.000 0.000 LGA V 547 V 547 17.347 3 0.039 0.039 17.347 0.000 0.000 LGA S 548 S 548 10.598 2 0.565 0.565 12.791 2.500 1.667 LGA R 549 R 549 7.577 7 0.616 0.616 8.807 17.143 6.234 LGA P 550 P 550 5.900 3 0.483 0.483 6.845 20.833 11.905 LGA N 551 N 551 2.874 4 0.726 0.726 2.874 61.071 30.536 LGA Y 552 Y 552 1.750 8 0.406 0.406 1.750 81.786 27.262 LGA P 553 P 553 0.933 3 0.087 0.087 1.320 83.690 47.823 LGA G 554 G 554 1.503 0 0.649 0.649 3.670 67.619 67.619 LGA I 555 I 555 2.591 4 0.222 0.222 3.999 57.500 28.750 LGA M 556 M 556 2.591 4 0.403 0.403 5.660 53.095 26.548 LGA Y 557 Y 557 3.579 8 0.176 0.176 3.579 53.690 17.897 LGA L 558 L 558 5.054 4 0.681 0.681 5.054 37.619 18.810 LGA Q 559 Q 559 3.728 5 0.038 0.038 4.497 56.667 25.185 LGA S 560 S 560 2.154 2 0.009 0.009 2.659 67.024 44.683 LGA E 561 E 561 1.805 5 0.038 0.038 3.906 68.333 30.370 LGA F 562 F 562 3.538 7 0.346 0.346 3.538 53.690 19.524 LGA D 563 D 563 2.017 4 0.298 0.298 2.413 66.786 33.393 LGA L 564 L 564 2.233 4 0.556 0.556 4.770 56.548 28.274 LGA G 565 G 565 1.476 0 0.083 0.083 1.935 79.405 79.405 LGA C 566 C 566 2.584 2 0.042 0.042 6.137 43.333 28.889 LGA T 567 T 567 8.607 3 0.139 0.139 9.563 6.310 3.605 LGA C 568 C 568 13.350 2 0.591 0.591 14.731 0.000 0.000 LGA D 569 D 569 17.868 4 0.179 0.179 19.774 0.000 0.000 LGA K 577 K 577 20.311 5 0.387 0.387 20.311 0.000 0.000 LGA L 578 L 578 16.208 4 0.632 0.632 17.694 0.000 0.000 LGA E 579 E 579 10.410 5 0.051 0.051 12.729 5.000 2.222 LGA E 580 E 580 8.776 5 0.413 0.413 9.868 2.381 1.058 LGA L 581 L 581 12.755 4 0.643 0.643 13.197 0.000 0.000 LGA N 582 N 582 12.507 4 0.171 0.171 12.507 0.000 0.000 LGA K 583 K 583 9.897 5 0.028 0.028 11.451 0.119 0.053 LGA R 584 R 584 14.975 7 0.091 0.091 17.269 0.000 0.000 LGA L 585 L 585 14.013 4 0.233 0.233 14.792 0.000 0.000 LGA H 586 H 586 17.269 6 0.032 0.032 20.491 0.000 0.000 LGA T 587 T 587 23.415 3 0.378 0.378 24.944 0.000 0.000 LGA K 588 K 588 26.927 5 0.437 0.437 28.982 0.000 0.000 LGA G 589 G 589 30.768 0 0.608 0.608 32.460 0.000 0.000 LGA S 590 S 590 29.585 2 0.573 0.573 29.960 0.000 0.000 LGA T 591 T 591 27.861 3 0.050 0.050 28.217 0.000 0.000 LGA E 592 E 592 27.303 5 0.569 0.569 27.493 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 49 196 196 100.00 384 196 51.04 784 SUMMARY(RMSD_GDC): 18.630 18.517 18.517 1.329 0.742 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 63 784 4.0 15 2.49 1.562 1.483 0.579 LGA_LOCAL RMSD: 2.489 Number of atoms: 15 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 23.625 Number of assigned atoms: 49 Std_ASGN_ATOMS RMSD: 18.630 Standard rmsd on all 49 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.260317 * X + 0.875007 * Y + 0.408164 * Z + -14.106067 Y_new = -0.929834 * X + 0.113319 * Y + 0.350098 * Z + -6.955247 Z_new = 0.260085 * X + -0.470661 * Y + 0.843110 * Z + 40.899498 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.297824 -0.263110 -0.509151 [DEG: -74.3598 -15.0751 -29.1722 ] ZXZ: 2.279765 0.567756 2.636759 [DEG: 130.6209 32.5300 151.0752 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS328_1_3 REMARK 2: T0543.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS328_1_3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 63 784 4.0 15 2.49 1.483 18.63 REMARK ---------------------------------------------------------- MOLECULE T0543TS328_1_3 REMARK PARENT number 3 PFRMAT TS TARGET T0543 PARENT 2o6r_A ATOM 2145 N ASN 537 -15.724 3.610 50.582 1.00 3.00 ATOM 2146 CA ASN 537 -14.384 3.928 51.019 1.00 3.00 ATOM 2147 C ASN 537 -14.642 4.718 52.286 1.00 3.00 ATOM 2148 O ASN 537 -15.751 4.656 52.830 1.00 3.00 ATOM 2149 N THR 538 -13.650 5.454 52.765 1.00 3.00 ATOM 2150 CA THR 538 -13.853 6.269 53.963 1.00 3.00 ATOM 2151 C THR 538 -14.541 7.636 53.981 1.00 3.00 ATOM 2152 O THR 538 -15.750 7.707 54.168 1.00 3.00 ATOM 2153 N PHE 539 -13.788 8.713 53.784 1.00 3.00 ATOM 2154 CA PHE 539 -14.427 10.029 53.798 1.00 3.00 ATOM 2155 C PHE 539 -13.609 11.215 53.318 1.00 3.00 ATOM 2156 O PHE 539 -14.179 12.230 52.908 1.00 3.00 ATOM 2157 N ARG 540 -12.274 11.122 53.372 1.00 3.00 ATOM 2158 CA ARG 540 -11.463 12.255 52.950 1.00 3.00 ATOM 2159 C ARG 540 -11.571 12.584 51.478 1.00 3.00 ATOM 2160 O ARG 540 -11.044 13.599 51.006 1.00 3.00 ATOM 2161 N PRO 541 -12.269 11.734 50.735 1.00 9.00 ATOM 2162 CA PRO 541 -12.482 11.983 49.331 1.00 9.00 ATOM 2163 C PRO 541 -13.467 13.146 49.194 1.00 9.00 ATOM 2164 O PRO 541 -13.540 13.782 48.145 1.00 9.00 ATOM 2165 N THR 542 -14.219 13.406 50.264 1.00 3.00 ATOM 2166 CA THR 542 -15.252 14.453 50.308 1.00 3.00 ATOM 2167 C THR 542 -14.842 15.884 49.944 1.00 3.00 ATOM 2168 O THR 542 -15.683 16.687 49.504 1.00 3.00 ATOM 2169 N MET 543 -13.574 16.213 50.144 1.00 3.00 ATOM 2170 CA MET 543 -13.089 17.548 49.811 1.00 3.00 ATOM 2171 C MET 543 -11.813 17.487 48.998 1.00 3.00 ATOM 2172 O MET 543 -11.138 16.456 48.962 1.00 3.00 ATOM 2173 N PRO 544 -11.498 18.581 48.313 1.00 3.00 ATOM 2174 CA PRO 544 -10.245 18.678 47.572 1.00 3.00 ATOM 2175 C PRO 544 -10.425 17.787 46.335 1.00 3.00 ATOM 2176 O PRO 544 -9.492 17.132 45.886 1.00 3.00 ATOM 2177 N ASP 545 -11.620 17.704 45.845 1.00 3.00 ATOM 2178 CA ASP 545 -11.977 16.982 44.625 1.00 3.00 ATOM 2179 C ASP 545 -12.020 17.945 43.438 1.00 3.00 ATOM 2180 O ASP 545 -12.807 18.884 43.523 1.00 3.00 ATOM 2181 N GLU 546 -11.196 17.793 42.410 1.00 3.00 ATOM 2182 CA GLU 546 -11.150 18.643 41.223 1.00 3.00 ATOM 2183 C GLU 546 -12.362 18.310 40.336 1.00 3.00 ATOM 2184 O GLU 546 -12.419 17.175 39.833 1.00 3.00 ATOM 2185 N VAL 547 -13.273 19.280 40.206 1.00 3.00 ATOM 2186 CA VAL 547 -14.527 19.068 39.479 1.00 3.00 ATOM 2187 C VAL 547 -14.453 19.544 38.029 1.00 3.00 ATOM 2188 O VAL 547 -15.036 18.959 37.102 1.00 3.00 ATOM 2189 N SER 548 -13.705 20.613 37.815 1.00 3.00 ATOM 2190 CA SER 548 -13.575 21.238 36.508 1.00 3.00 ATOM 2191 C SER 548 -12.604 20.655 35.505 1.00 3.00 ATOM 2192 O SER 548 -12.195 21.395 34.572 1.00 3.00 ATOM 2193 N ARG 549 -12.212 19.377 35.586 1.00 3.00 ATOM 2194 CA ARG 549 -11.278 18.849 34.603 1.00 3.00 ATOM 2195 C ARG 549 -12.047 17.693 33.943 1.00 3.00 ATOM 2196 O ARG 549 -11.844 17.421 32.755 1.00 3.00 ATOM 2197 N PRO 550 -12.948 17.055 34.698 1.00 3.00 ATOM 2198 CA PRO 550 -13.731 15.909 34.213 1.00 3.00 ATOM 2199 C PRO 550 -15.057 16.300 33.550 1.00 3.00 ATOM 2200 O PRO 550 -16.116 15.747 33.851 1.00 3.00 ATOM 2201 N ASN 551 -14.982 17.250 32.631 1.00 3.00 ATOM 2202 CA ASN 551 -16.151 17.770 31.947 1.00 3.00 ATOM 2203 C ASN 551 -17.019 16.757 31.163 1.00 3.00 ATOM 2204 O ASN 551 -18.140 17.086 30.790 1.00 3.00 ATOM 2205 N TYR 552 -16.539 15.540 30.917 1.00 3.00 ATOM 2206 CA TYR 552 -17.360 14.583 30.158 1.00 3.00 ATOM 2207 C TYR 552 -18.042 13.573 31.062 1.00 3.00 ATOM 2208 O TYR 552 -18.750 12.672 30.611 1.00 3.00 ATOM 2209 N PRO 553 -17.841 13.758 32.351 1.00 3.00 ATOM 2210 CA PRO 553 -18.428 12.885 33.348 1.00 3.00 ATOM 2211 C PRO 553 -19.955 12.786 33.189 1.00 3.00 ATOM 2212 O PRO 553 -20.680 13.794 33.136 1.00 3.00 ATOM 2213 N GLY 554 -20.432 11.555 33.088 1.00 3.00 ATOM 2214 CA GLY 554 -21.850 11.280 32.960 1.00 3.00 ATOM 2215 C GLY 554 -22.335 10.576 34.226 1.00 3.00 ATOM 2216 O GLY 554 -23.517 10.656 34.602 1.00 3.00 ATOM 2217 N ILE 555 -21.412 9.895 34.890 1.00 3.00 ATOM 2218 CA ILE 555 -21.731 9.173 36.111 1.00 3.00 ATOM 2219 C ILE 555 -20.708 9.457 37.220 1.00 3.00 ATOM 2220 O ILE 555 -19.497 9.226 37.053 1.00 3.00 ATOM 2221 N MET 556 -21.185 9.971 38.344 1.00 3.00 ATOM 2222 CA MET 556 -20.309 10.243 39.487 1.00 3.00 ATOM 2223 C MET 556 -20.103 10.684 40.924 1.00 3.00 ATOM 2224 O MET 556 -19.014 11.139 41.281 1.00 3.00 ATOM 2225 N TYR 557 -21.131 10.552 41.758 1.00 3.00 ATOM 2226 CA TYR 557 -21.024 10.943 43.162 1.00 3.00 ATOM 2227 C TYR 557 -20.437 9.800 43.973 1.00 3.00 ATOM 2228 O TYR 557 -21.072 8.750 44.115 1.00 3.00 ATOM 2229 N LEU 558 -19.248 9.984 44.533 1.00 3.00 ATOM 2230 CA LEU 558 -18.619 8.915 45.307 1.00 3.00 ATOM 2231 C LEU 558 -18.917 8.984 46.801 1.00 3.00 ATOM 2232 O LEU 558 -18.472 8.125 47.572 1.00 3.00 ATOM 2233 N GLN 559 -19.690 9.987 47.221 1.00 9.00 ATOM 2234 CA GLN 559 -20.061 10.126 48.624 1.00 9.00 ATOM 2235 C GLN 559 -20.938 8.947 49.061 1.00 9.00 ATOM 2236 O GLN 559 -21.054 8.655 50.254 1.00 9.00 ATOM 2237 N SER 560 -21.553 8.279 48.093 1.00 3.00 ATOM 2238 CA SER 560 -22.418 7.134 48.366 1.00 3.00 ATOM 2239 C SER 560 -21.652 5.964 48.970 1.00 3.00 ATOM 2240 O SER 560 -22.255 5.048 49.536 1.00 3.00 ATOM 2241 N GLU 561 -20.326 5.996 48.861 1.00 3.00 ATOM 2242 CA GLU 561 -19.497 4.924 49.407 1.00 3.00 ATOM 2243 C GLU 561 -18.843 5.284 50.737 1.00 3.00 ATOM 2244 O GLU 561 -18.371 4.402 51.455 1.00 3.00 ATOM 2245 N PHE 562 -18.819 6.576 51.068 1.00 3.00 ATOM 2246 CA PHE 562 -18.181 7.023 52.307 1.00 3.00 ATOM 2247 C PHE 562 -18.463 7.707 53.626 1.00 3.00 ATOM 2248 O PHE 562 -19.446 7.348 54.294 1.00 3.00 ATOM 2249 N ASP 563 -17.636 8.685 53.994 1.00 3.00 ATOM 2250 CA ASP 563 -17.799 9.413 55.259 1.00 3.00 ATOM 2251 C ASP 563 -17.774 10.944 55.057 1.00 3.00 ATOM 2252 O ASP 563 -17.325 11.693 55.929 1.00 3.00 ATOM 2253 N LEU 564 -18.251 11.407 53.909 1.00 3.00 ATOM 2254 CA LEU 564 -18.241 12.826 53.623 1.00 3.00 ATOM 2255 C LEU 564 -18.989 13.676 54.657 1.00 3.00 ATOM 2256 O LEU 564 -20.172 13.441 54.951 1.00 3.00 ATOM 2257 N GLY 565 -18.300 14.674 55.198 1.00 3.00 ATOM 2258 CA GLY 565 -18.913 15.555 56.184 1.00 3.00 ATOM 2259 C GLY 565 -19.276 16.898 55.577 1.00 3.00 ATOM 2260 O GLY 565 -19.885 17.722 56.222 1.00 3.00 ATOM 2261 N CYS 566 -18.898 17.124 54.331 1.00 3.00 ATOM 2262 CA CYS 566 -19.243 18.375 53.676 1.00 3.00 ATOM 2263 C CYS 566 -18.798 18.365 52.218 1.00 3.00 ATOM 2264 O CYS 566 -17.983 17.548 51.811 1.00 3.00 ATOM 2265 N THR 567 -19.340 19.276 51.429 1.00 3.00 ATOM 2266 CA THR 567 -18.975 19.373 50.028 1.00 3.00 ATOM 2267 C THR 567 -18.403 20.765 49.726 1.00 3.00 ATOM 2268 O THR 567 -18.919 21.776 50.203 1.00 3.00 ATOM 2269 N CYS 568 -17.323 20.835 48.938 1.00 3.00 ATOM 2270 CA CYS 568 -16.726 22.141 48.607 1.00 3.00 ATOM 2271 C CYS 568 -17.681 22.960 47.738 1.00 3.00 ATOM 2272 O CYS 568 -18.432 22.404 46.933 1.00 3.00 ATOM 2273 N ASP 569 -17.660 24.279 47.922 1.00 3.00 ATOM 2274 CA ASP 569 -18.501 25.193 47.136 1.00 3.00 ATOM 2275 C ASP 569 -18.331 24.890 45.663 1.00 3.00 ATOM 2276 O ASP 569 -17.208 24.775 45.184 1.00 3.00 ATOM 2277 N ASP 570 -19.441 24.776 44.946 1.00 3.00 ATOM 2278 CA ASP 570 -19.381 24.494 43.523 1.00 3.00 ATOM 2279 C ASP 570 -18.543 23.326 43.024 1.00 3.00 ATOM 2280 O ASP 570 -18.088 23.370 41.889 1.00 3.00 ATOM 2281 N LYS 571 -18.346 22.278 43.809 1.00 3.00 ATOM 2282 CA LYS 571 -17.540 21.160 43.311 1.00 3.00 ATOM 2283 C LYS 571 -18.071 20.458 42.096 1.00 3.00 ATOM 2284 O LYS 571 -17.323 19.748 41.438 1.00 3.00 ATOM 2285 N VAL 572 -19.355 20.617 41.818 1.00 3.00 ATOM 2286 CA VAL 572 -19.967 19.959 40.661 1.00 3.00 ATOM 2287 C VAL 572 -20.244 20.929 39.505 1.00 3.00 ATOM 2288 O VAL 572 -20.830 20.533 38.492 1.00 3.00 ATOM 2289 N GLU 573 -19.828 22.186 39.646 1.00 3.00 ATOM 2290 CA GLU 573 -20.110 23.191 38.617 1.00 3.00 ATOM 2291 C GLU 573 -19.687 22.928 37.173 1.00 3.00 ATOM 2292 O GLU 573 -20.410 23.307 36.255 1.00 3.00 ATOM 2293 N PRO 574 -18.557 22.279 36.937 1.00 3.00 ATOM 2294 CA PRO 574 -18.154 22.069 35.550 1.00 3.00 ATOM 2295 C PRO 574 -18.740 20.826 34.886 1.00 3.00 ATOM 2296 O PRO 574 -18.427 20.541 33.724 1.00 3.00 ATOM 2297 N LYS 575 -19.601 20.105 35.606 1.00 3.00 ATOM 2298 CA LYS 575 -20.163 18.843 35.099 1.00 3.00 ATOM 2299 C LYS 575 -21.493 18.940 34.362 1.00 3.00 ATOM 2300 O LYS 575 -22.439 18.220 34.662 1.00 3.00 ATOM 2301 N ASN 576 -21.549 19.812 33.365 1.00 3.00 ATOM 2302 CA ASN 576 -22.761 20.010 32.614 1.00 3.00 ATOM 2303 C ASN 576 -23.364 18.787 31.951 1.00 3.00 ATOM 2304 O ASN 576 -24.493 18.868 31.506 1.00 3.00 ATOM 2305 N LYS 577 -22.652 17.669 31.871 1.00 3.00 ATOM 2306 CA LYS 577 -23.222 16.456 31.236 1.00 3.00 ATOM 2307 C LYS 577 -23.584 15.366 32.227 1.00 3.00 ATOM 2308 O LYS 577 -24.107 14.331 31.851 1.00 3.00 ATOM 2309 N LEU 578 -23.291 15.588 33.500 1.00 3.00 ATOM 2310 CA LEU 578 -23.576 14.598 34.533 1.00 3.00 ATOM 2311 C LEU 578 -25.053 14.196 34.540 1.00 3.00 ATOM 2312 O LEU 578 -25.938 15.059 34.613 1.00 3.00 ATOM 2313 N GLU 579 -25.303 12.890 34.465 1.00 3.00 ATOM 2314 CA GLU 579 -26.644 12.323 34.489 1.00 3.00 ATOM 2315 C GLU 579 -26.951 11.705 35.841 1.00 3.00 ATOM 2316 O GLU 579 -28.104 11.738 36.291 1.00 3.00 ATOM 2317 N GLU 580 -25.929 11.095 36.451 1.00 3.00 ATOM 2318 CA GLU 580 -26.059 10.439 37.764 1.00 3.00 ATOM 2319 C GLU 580 -25.658 9.693 39.031 1.00 3.00 ATOM 2320 O GLU 580 -26.352 8.762 39.440 1.00 3.00 ATOM 2321 N LEU 581 -24.547 10.093 39.652 1.00 3.00 ATOM 2322 CA LEU 581 -24.075 9.377 40.839 1.00 3.00 ATOM 2323 C LEU 581 -24.551 9.856 42.207 1.00 3.00 ATOM 2324 O LEU 581 -24.881 11.017 42.413 1.00 3.00 ATOM 2325 N ASN 582 -24.598 8.911 43.148 1.00 3.00 ATOM 2326 CA ASN 582 -25.021 9.149 44.525 1.00 3.00 ATOM 2327 C ASN 582 -26.238 10.031 44.597 1.00 3.00 ATOM 2328 O ASN 582 -26.238 11.025 45.309 1.00 3.00 ATOM 2329 N LYS 583 -27.288 9.681 43.870 1.00 9.00 ATOM 2330 CA LYS 583 -28.512 10.470 43.894 1.00 9.00 ATOM 2331 C LYS 583 -29.072 10.594 45.320 1.00 9.00 ATOM 2332 O LYS 583 -29.567 11.634 45.708 1.00 9.00 ATOM 2333 N ARG 584 -28.964 9.537 46.109 1.00 9.00 ATOM 2334 CA ARG 584 -29.468 9.584 47.466 1.00 9.00 ATOM 2335 C ARG 584 -28.457 9.943 48.547 1.00 9.00 ATOM 2336 O ARG 584 -28.591 9.522 49.691 1.00 9.00 ATOM 2337 N LEU 585 -27.446 10.725 48.196 1.00 3.00 ATOM 2338 CA LEU 585 -26.453 11.099 49.194 1.00 3.00 ATOM 2339 C LEU 585 -25.297 10.130 49.222 1.00 3.00 ATOM 2340 O LEU 585 -25.088 9.401 48.266 1.00 3.00 ATOM 2341 N HIS 586 -24.539 10.116 50.309 1.00 3.00 ATOM 2342 CA HIS 586 -23.428 9.197 50.356 1.00 3.00 ATOM 2343 C HIS 586 -23.490 8.119 51.411 1.00 3.00 ATOM 2344 O HIS 586 -22.475 7.512 51.728 1.00 3.00 ATOM 2345 N THR 587 -24.682 7.877 51.925 1.00 3.00 ATOM 2346 CA THR 587 -24.872 6.827 52.914 1.00 3.00 ATOM 2347 C THR 587 -23.507 7.488 53.194 1.00 3.00 ATOM 2348 O THR 587 -22.437 6.918 52.921 1.00 3.00 ATOM 2349 N LYS 588 -23.560 8.701 53.724 1.00 3.00 ATOM 2350 CA LYS 588 -22.361 9.451 54.062 1.00 3.00 ATOM 2351 C LYS 588 -22.674 10.113 55.387 1.00 3.00 ATOM 2352 O LYS 588 -23.573 9.652 56.106 1.00 3.00 ATOM 2353 N GLY 589 -21.977 11.191 55.722 1.00 3.00 ATOM 2354 CA GLY 589 -22.270 11.883 56.988 1.00 3.00 ATOM 2355 C GLY 589 -22.551 13.356 56.728 1.00 3.00 ATOM 2356 O GLY 589 -22.096 14.239 57.464 1.00 3.00 ATOM 2357 N SER 590 -23.323 13.622 55.678 1.00 3.00 ATOM 2358 CA SER 590 -23.636 14.995 55.310 1.00 3.00 ATOM 2359 C SER 590 -24.777 15.590 56.109 1.00 3.00 ATOM 2360 O SER 590 -25.849 14.994 56.226 1.00 3.00 ATOM 2361 N THR 591 -24.533 16.775 56.659 1.00 3.00 ATOM 2362 CA THR 591 -25.551 17.487 57.423 1.00 3.00 ATOM 2363 C THR 591 -26.186 18.552 56.536 1.00 3.00 ATOM 2364 O THR 591 -27.361 18.894 56.693 1.00 3.00 ATOM 2365 N GLU 592 -25.414 19.053 55.588 1.00 3.00 ATOM 2366 CA GLU 592 -25.891 20.104 54.695 1.00 3.00 ATOM 2367 C GLU 592 -25.040 20.135 53.426 1.00 3.00 ATOM 2368 O GLU 592 -24.031 19.436 53.324 1.00 3.00 ATOM 2369 N ALA 593 -25.440 20.958 52.468 1.00 3.00 ATOM 2370 CA ALA 593 -24.684 21.121 51.231 1.00 3.00 ATOM 2371 C ALA 593 -24.626 22.616 50.974 1.00 3.00 ATOM 2372 O ALA 593 -25.445 23.367 51.492 1.00 3.00 ATOM 2373 N GLU 594 -23.621 23.081 50.219 1.00 3.00 ATOM 2374 CA GLU 594 -23.546 24.530 49.937 1.00 3.00 ATOM 2375 C GLU 594 -24.763 24.981 49.094 1.00 3.00 ATOM 2376 O GLU 594 -25.299 24.204 48.304 1.00 3.00 ATOM 2377 N THR 595 -25.198 26.223 49.260 1.00 3.00 ATOM 2378 CA THR 595 -26.332 26.733 48.499 1.00 3.00 ATOM 2379 C THR 595 -26.010 26.659 46.996 1.00 3.00 ATOM 2380 O THR 595 -24.876 26.908 46.578 1.00 3.00 ATOM 2381 N GLY 596 -27.009 26.313 46.189 1.00 3.00 ATOM 2382 CA GLY 596 -26.827 26.225 44.745 1.00 3.00 ATOM 2383 C GLY 596 -25.852 25.173 44.242 1.00 3.00 ATOM 2384 O GLY 596 -25.359 25.258 43.122 1.00 3.00 ATOM 2385 N LYS 597 -25.583 24.159 45.050 1.00 3.00 ATOM 2386 CA LYS 597 -24.631 23.115 44.675 1.00 3.00 ATOM 2387 C LYS 597 -25.015 22.263 43.453 1.00 3.00 ATOM 2388 O LYS 597 -24.150 21.709 42.790 1.00 3.00 ATOM 2389 N PHE 598 -26.302 22.159 43.153 1.00 3.00 ATOM 2390 CA PHE 598 -26.733 21.352 42.021 1.00 3.00 ATOM 2391 C PHE 598 -27.242 22.179 40.837 1.00 3.00 ATOM 2392 O PHE 598 -27.588 21.618 39.798 1.00 3.00 ATOM 2393 N ARG 599 -27.290 23.500 40.987 1.00 3.00 ATOM 2394 CA ARG 599 -27.802 24.378 39.925 1.00 3.00 ATOM 2395 C ARG 599 -27.235 24.227 38.511 1.00 3.00 ATOM 2396 O ARG 599 -27.981 24.331 37.550 1.00 3.00 TER END ########################## # # # ACE results: # # # ########################## # WARNING! TARGET 6318 atoms, MODEL 6885 atoms, 6130 common with TARGET Number of atoms possible to evaluate: 196 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 87.60 40.0 65 4.2 1563 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 534 ARMSMC SURFACE . . . . . . . . 91.06 35.8 53 7.8 680 ARMSMC BURIED . . . . . . . . 70.35 58.3 12 1.4 883 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 670 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 624 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 233 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 296 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 374 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 444 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 343 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 159 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 203 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 241 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 138 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 115 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 52 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 74 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 64 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 49 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 49 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 17 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 29 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 18.63 (Number of atoms: 49) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 18.63 49 6.2 784 CRMSCA CRN = ALL/NP . . . . . 0.3802 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 268 CRMSCA SURFACE . . . . . . . . 19.46 39 11.4 341 CRMSCA BURIED . . . . . . . . 14.96 10 2.3 443 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 18.52 196 5.1 3872 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 1331 CRMSMC SURFACE . . . . . . . . 19.28 156 9.3 1686 CRMSMC BURIED . . . . . . . . 15.20 40 1.8 2186 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 3182 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 2746 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 1125 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 1379 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 1803 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 18.52 196 3.1 6318 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 2197 CRMSALL SURFACE . . . . . . . . 19.28 156 5.7 2743 CRMSALL BURIED . . . . . . . . 15.20 40 1.1 3575 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 13.321 0.615 0.307 49 6.2 784 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 268 ERRCA SURFACE . . . . . . . . 14.067 0.623 0.312 39 11.4 341 ERRCA BURIED . . . . . . . . 10.412 0.582 0.291 10 2.3 443 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 13.212 0.613 0.307 196 5.1 3872 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 1331 ERRMC SURFACE . . . . . . . . 13.860 0.619 0.310 156 9.3 1686 ERRMC BURIED . . . . . . . . 10.682 0.590 0.295 40 1.8 2186 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 3182 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 2746 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 1125 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 1379 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 1803 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 13.212 0.613 0.307 196 3.1 6318 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 2197 ERRALL SURFACE . . . . . . . . 13.860 0.619 0.310 156 5.7 2743 ERRALL BURIED . . . . . . . . 10.682 0.590 0.295 40 1.1 3575 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 0 7 49 784 DISTCA CA (P) 0.00 0.00 0.00 0.00 0.89 784 DISTCA CA (RMS) 0.00 0.00 0.00 0.00 7.69 DISTCA ALL (N) 0 0 0 4 32 196 6318 DISTALL ALL (P) 0.00 0.00 0.00 0.06 0.51 6318 DISTALL ALL (RMS) 0.00 0.00 0.00 4.66 8.03 DISTALL END of the results output