####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 24 ( 96), selected 24 , name T0543TS328_1_1-D3 # Molecule2: number of CA atoms 386 ( 3136), selected 24 , name T0543-D3.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS328_1_1-D3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 146 - 164 4.91 9.03 LCS_AVERAGE: 4.75 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 149 - 158 1.80 9.60 LCS_AVERAGE: 1.98 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 150 - 154 0.39 10.08 LONGEST_CONTINUOUS_SEGMENT: 5 153 - 157 0.84 13.23 LCS_AVERAGE: 0.99 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 24 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 141 S 141 3 4 15 3 3 3 3 4 4 4 4 4 4 5 5 12 14 15 15 17 17 18 19 LCS_GDT H 142 H 142 3 4 16 3 3 3 3 4 4 7 9 9 10 12 12 13 14 16 16 17 17 18 19 LCS_GDT W 143 W 143 3 4 16 3 3 3 3 4 4 4 4 4 4 5 6 13 14 16 16 17 17 18 19 LCS_GDT V 144 V 144 0 4 16 0 0 0 3 4 6 8 9 9 11 12 12 14 14 16 16 17 18 19 20 LCS_GDT D 145 D 145 3 4 16 0 3 3 4 4 6 8 9 9 11 12 14 14 14 16 16 17 18 19 20 LCS_GDT D 146 D 146 3 5 19 0 3 3 4 5 5 9 13 13 13 13 14 15 15 16 17 19 19 19 20 LCS_GDT D 147 D 147 4 5 19 3 4 4 6 10 11 12 13 13 14 15 16 16 17 18 18 19 19 19 20 LCS_GDT C 148 C 148 4 5 19 3 4 4 4 5 8 12 13 13 14 17 17 17 17 18 18 19 19 19 20 LCS_GDT E 149 E 149 4 10 19 3 4 7 8 10 11 12 13 13 14 17 17 17 17 18 18 19 19 19 20 LCS_GDT E 150 E 150 5 10 19 5 5 7 8 10 11 12 13 13 14 17 17 17 17 18 18 19 19 19 20 LCS_GDT I 151 I 151 5 10 19 5 5 7 8 10 11 12 13 13 14 17 17 17 17 18 18 19 19 19 20 LCS_GDT K 152 K 152 5 10 19 5 5 7 8 10 11 12 13 13 14 17 17 17 17 18 18 19 19 19 20 LCS_GDT V 153 V 153 5 10 19 5 5 7 8 10 11 12 13 13 14 17 17 17 17 18 18 19 19 19 20 LCS_GDT P 154 P 154 5 10 19 5 5 7 8 10 11 12 13 13 14 17 17 17 17 18 18 19 19 19 20 LCS_GDT E 155 E 155 5 10 19 3 4 5 8 10 11 12 13 13 14 17 17 17 17 18 18 19 19 19 20 LCS_GDT C 156 C 156 5 10 19 3 4 7 8 10 11 12 13 13 14 17 17 17 17 18 18 19 19 19 20 LCS_GDT P 157 P 157 5 10 19 3 4 5 8 10 11 12 13 13 14 17 17 17 17 18 18 19 19 19 20 LCS_GDT A 158 A 158 3 10 19 3 3 6 8 10 11 12 13 13 14 17 17 17 17 18 18 19 19 19 20 LCS_GDT G 159 G 159 4 8 19 4 4 6 7 8 10 10 11 13 14 17 17 17 17 18 18 19 19 19 20 LCS_GDT F 160 F 160 4 8 19 3 4 4 4 5 7 9 11 13 14 17 17 17 17 18 18 19 19 19 20 LCS_GDT V 161 V 161 4 8 19 3 4 4 5 8 9 9 11 12 14 17 17 17 17 18 18 19 19 19 19 LCS_GDT R 162 R 162 4 8 19 3 4 5 5 6 7 9 10 12 14 17 17 17 17 18 18 19 19 19 20 LCS_GDT P 163 P 163 3 8 19 2 3 5 5 6 7 8 10 13 14 17 17 17 17 18 18 19 19 19 20 LCS_GDT P 164 P 164 3 8 19 4 4 6 7 9 10 10 11 13 14 17 17 17 17 18 18 19 19 19 20 LCS_AVERAGE LCS_A: 2.57 ( 0.99 1.98 4.75 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 5 7 8 10 11 12 13 13 14 17 17 17 17 18 18 19 19 19 20 GDT PERCENT_AT 1.30 1.30 1.81 2.07 2.59 2.85 3.11 3.37 3.37 3.63 4.40 4.40 4.40 4.40 4.66 4.66 4.92 4.92 4.92 5.18 GDT RMS_LOCAL 0.39 0.39 1.28 1.48 1.80 1.94 2.20 2.48 2.48 3.24 3.97 3.97 3.97 3.97 4.38 4.38 4.91 4.91 4.91 5.92 GDT RMS_ALL_AT 10.08 10.08 9.55 9.64 9.60 9.37 9.10 9.51 9.51 8.90 9.61 9.61 9.61 9.61 9.19 9.19 9.03 9.03 9.03 8.20 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 141 S 141 18.289 2 0.557 0.557 18.289 0.000 0.000 LGA H 142 H 142 16.010 6 0.173 0.173 17.141 0.000 0.000 LGA W 143 W 143 14.581 10 0.122 0.122 14.799 0.000 0.000 LGA V 144 V 144 12.421 3 0.677 0.677 12.421 0.000 0.000 LGA D 145 D 145 9.208 4 0.530 0.530 10.089 2.262 1.131 LGA D 146 D 146 4.229 4 0.652 0.652 5.612 39.643 19.821 LGA D 147 D 147 2.259 4 0.702 0.702 2.832 62.857 31.429 LGA C 148 C 148 4.032 2 0.395 0.395 4.167 45.595 30.397 LGA E 149 E 149 2.467 5 0.709 0.709 3.764 65.833 29.259 LGA E 150 E 150 1.926 5 0.671 0.671 3.403 67.262 29.894 LGA I 151 I 151 1.920 4 0.204 0.204 2.604 68.929 34.464 LGA K 152 K 152 2.239 5 0.033 0.033 2.814 67.024 29.788 LGA V 153 V 153 1.300 3 0.145 0.145 1.816 77.143 44.082 LGA P 154 P 154 2.778 3 0.062 0.062 2.778 65.119 37.211 LGA E 155 E 155 1.333 5 0.114 0.114 2.867 77.619 34.497 LGA C 156 C 156 2.599 2 0.588 0.588 3.497 63.214 42.143 LGA P 157 P 157 1.442 3 0.066 0.066 2.727 82.262 47.007 LGA A 158 A 158 1.480 1 0.459 0.459 4.440 60.833 48.667 LGA G 159 G 159 7.931 0 0.701 0.701 8.870 8.571 8.571 LGA F 160 F 160 11.155 7 0.289 0.289 14.588 0.119 0.043 LGA V 161 V 161 15.430 3 0.729 0.729 16.393 0.000 0.000 LGA R 162 R 162 17.081 7 0.687 0.687 17.081 0.000 0.000 LGA P 163 P 163 14.323 3 0.071 0.071 15.560 0.000 0.000 LGA P 164 P 164 11.212 3 0.101 0.101 11.499 0.119 0.068 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 24 96 96 100.00 190 96 50.53 386 SUMMARY(RMSD_GDC): 7.782 7.667 7.667 2.213 1.214 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 24 386 4.0 13 2.48 2.850 2.791 0.504 LGA_LOCAL RMSD: 2.480 Number of atoms: 13 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.510 Number of assigned atoms: 24 Std_ASGN_ATOMS RMSD: 7.782 Standard rmsd on all 24 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.944076 * X + -0.246041 * Y + 0.219509 * Z + -27.775379 Y_new = -0.320566 * X + -0.840728 * Y + 0.436364 * Z + 100.365677 Z_new = 0.077184 * X + -0.482328 * Y + -0.872584 * Z + -68.707062 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.327340 -0.077261 -2.636634 [DEG: -18.7552 -4.4267 -151.0680 ] ZXZ: 2.675515 2.631263 2.982914 [DEG: 153.2957 150.7603 170.9084 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS328_1_1-D3 REMARK 2: T0543-D3.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS328_1_1-D3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 24 386 4.0 13 2.48 2.791 7.78 REMARK ---------------------------------------------------------- MOLECULE T0543TS328_1_1-D3 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 1 REMARK PFRMAT TS REMARK TARGET T0543 REMARK PARENT 3bz5_A ATOM 561 N SER 141 7.265 69.605 -7.212 1.00 3.00 N ATOM 562 CA SER 141 8.179 70.689 -6.653 1.00 3.00 C ATOM 563 C SER 141 7.411 71.658 -5.717 1.00 3.00 C ATOM 564 O SER 141 7.675 72.879 -5.681 1.00 3.00 O ATOM 565 N HIS 142 6.496 71.081 -4.928 1.00 3.00 N ATOM 566 CA HIS 142 5.675 71.834 -4.000 1.00 3.00 C ATOM 567 C HIS 142 6.496 72.376 -2.776 1.00 3.00 C ATOM 568 O HIS 142 6.963 71.604 -1.938 1.00 3.00 O ATOM 569 N TRP 143 6.679 73.697 -2.706 1.00 3.00 N ATOM 570 CA TRP 143 7.314 74.330 -1.531 1.00 3.00 C ATOM 571 C TRP 143 6.355 74.364 -0.313 1.00 3.00 C ATOM 572 O TRP 143 6.826 74.433 0.825 1.00 3.00 O ATOM 573 N VAL 144 1.776 73.457 0.892 1.00 3.00 N ATOM 574 CA VAL 144 0.466 72.876 0.543 1.00 3.00 C ATOM 575 C VAL 144 -0.475 72.968 1.724 1.00 3.00 C ATOM 576 O VAL 144 -0.032 72.844 2.866 1.00 3.00 O ATOM 577 N ASP 145 -1.763 73.151 1.445 1.00 3.00 N ATOM 578 CA ASP 145 -2.790 73.275 2.466 1.00 3.00 C ATOM 579 C ASP 145 -3.802 72.145 2.274 1.00 3.00 C ATOM 580 O ASP 145 -4.618 72.195 1.362 1.00 3.00 O ATOM 581 N ASP 146 -5.681 71.302 4.974 1.00 3.00 N ATOM 582 CA ASP 146 -6.638 71.484 6.106 1.00 3.00 C ATOM 583 C ASP 146 -8.159 71.400 5.713 1.00 3.00 C ATOM 584 O ASP 146 -8.956 70.896 6.511 1.00 3.00 O ATOM 585 N ASP 147 -8.548 71.897 4.509 1.00 3.00 N ATOM 586 CA ASP 147 -9.963 71.734 4.107 1.00 3.00 C ATOM 587 C ASP 147 -10.402 70.337 3.723 1.00 3.00 C ATOM 588 O ASP 147 -11.585 70.096 3.660 1.00 3.00 O ATOM 589 N CYS 148 -9.464 69.444 3.433 1.00 3.00 N ATOM 590 CA CYS 148 -9.760 68.141 2.884 1.00 3.00 C ATOM 591 C CYS 148 -10.051 67.141 4.040 1.00 3.00 C ATOM 592 O CYS 148 -9.348 66.141 4.197 1.00 3.00 O ATOM 593 N GLU 149 -11.152 67.382 4.768 1.00 3.00 N ATOM 594 CA GLU 149 -11.535 66.588 5.965 1.00 3.00 C ATOM 595 C GLU 149 -11.898 65.097 5.735 1.00 3.00 C ATOM 596 O GLU 149 -11.904 64.325 6.722 1.00 3.00 O ATOM 597 N GLU 150 -12.236 64.711 4.488 1.00 3.00 N ATOM 598 CA GLU 150 -12.510 63.308 4.176 1.00 3.00 C ATOM 599 C GLU 150 -11.266 62.466 3.835 1.00 3.00 C ATOM 600 O GLU 150 -11.425 61.249 3.637 1.00 3.00 O ATOM 601 N ILE 151 -10.040 63.029 3.808 1.00 3.00 N ATOM 602 CA ILE 151 -8.898 62.247 3.290 1.00 3.00 C ATOM 603 C ILE 151 -8.637 61.028 4.155 1.00 3.00 C ATOM 604 O ILE 151 -8.650 61.158 5.366 1.00 3.00 O ATOM 605 N LYS 152 -8.486 59.855 3.520 1.00 3.00 N ATOM 606 CA LYS 152 -8.019 58.601 4.191 1.00 3.00 C ATOM 607 C LYS 152 -6.584 58.192 3.789 1.00 3.00 C ATOM 608 O LYS 152 -5.915 57.491 4.534 1.00 3.00 O ATOM 609 N VAL 153 -6.159 58.561 2.588 1.00 3.00 N ATOM 610 CA VAL 153 -4.821 58.327 2.089 1.00 3.00 C ATOM 611 C VAL 153 -4.284 59.645 1.565 1.00 3.00 C ATOM 612 O VAL 153 -4.888 60.225 0.644 1.00 3.00 O ATOM 613 N PRO 154 -3.139 60.072 2.114 1.00 3.00 N ATOM 614 CA PRO 154 -2.415 61.285 1.683 1.00 3.00 C ATOM 615 C PRO 154 -0.963 60.988 1.459 1.00 3.00 C ATOM 616 O PRO 154 -0.298 60.503 2.388 1.00 3.00 O ATOM 617 N GLU 155 -0.454 61.283 0.260 1.00 3.00 N ATOM 618 CA GLU 155 0.986 61.071 -0.083 1.00 3.00 C ATOM 619 C GLU 155 1.584 62.340 -0.737 1.00 3.00 C ATOM 620 O GLU 155 1.260 62.652 -1.894 1.00 3.00 O ATOM 621 N CYS 156 2.450 63.050 0.001 1.00 3.00 N ATOM 622 CA CYS 156 3.179 64.235 -0.518 1.00 3.00 C ATOM 623 C CYS 156 4.693 64.040 -0.557 1.00 3.00 C ATOM 624 O CYS 156 5.469 65.006 -0.517 1.00 3.00 O ATOM 625 N PRO 157 5.119 62.803 -0.746 1.00 3.00 N ATOM 626 CA PRO 157 6.541 62.468 -0.703 1.00 3.00 C ATOM 627 C PRO 157 7.329 63.085 -1.856 1.00 3.00 C ATOM 628 O PRO 157 6.774 63.455 -2.863 1.00 3.00 O ATOM 629 N ALA 158 8.636 63.177 -1.706 1.00 3.00 N ATOM 630 CA ALA 158 9.535 63.785 -2.754 1.00 3.00 C ATOM 631 C ALA 158 9.040 65.204 -3.249 1.00 3.00 C ATOM 632 O ALA 158 8.897 65.486 -4.425 1.00 3.00 O ATOM 633 N GLY 159 8.691 66.033 -2.275 1.00 3.00 N ATOM 634 CA GLY 159 8.434 67.471 -2.450 1.00 3.00 C ATOM 635 C GLY 159 9.289 68.206 -1.419 1.00 3.00 C ATOM 636 O GLY 159 9.611 67.613 -0.355 1.00 3.00 O ATOM 637 N PHE 160 9.711 69.457 -1.716 1.00 3.00 N ATOM 638 CA PHE 160 10.462 70.254 -0.735 1.00 3.00 C ATOM 639 C PHE 160 9.534 71.060 0.208 1.00 3.00 C ATOM 640 O PHE 160 9.717 72.253 0.404 1.00 3.00 O ATOM 641 N VAL 161 8.541 70.388 0.786 1.00 3.00 N ATOM 642 CA VAL 161 7.652 70.979 1.775 1.00 3.00 C ATOM 643 C VAL 161 8.455 71.054 3.093 1.00 3.00 C ATOM 644 O VAL 161 9.241 70.149 3.393 1.00 3.00 O ATOM 645 N ARG 162 8.285 72.150 3.835 1.00 3.00 N ATOM 646 CA ARG 162 8.948 72.387 5.128 1.00 3.00 C ATOM 647 C ARG 162 7.990 72.423 6.304 1.00 3.00 C ATOM 648 O ARG 162 8.414 72.506 7.437 1.00 3.00 O ATOM 649 N PRO 163 6.697 72.347 6.035 1.00 3.00 N ATOM 650 CA PRO 163 5.647 72.409 7.043 1.00 3.00 C ATOM 651 C PRO 163 4.396 71.710 6.466 1.00 3.00 C ATOM 652 O PRO 163 4.057 71.930 5.281 1.00 3.00 O ATOM 653 N PRO 164 3.794 70.807 7.252 1.00 3.00 N ATOM 654 CA PRO 164 2.570 70.057 6.850 1.00 3.00 C ATOM 655 C PRO 164 1.634 69.955 8.025 1.00 3.00 C ATOM 656 O PRO 164 2.065 69.559 9.098 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 96 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 92.42 37.0 46 6.0 767 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 306 ARMSMC SURFACE . . . . . . . . 99.78 37.8 37 10.7 347 ARMSMC BURIED . . . . . . . . 52.27 33.3 9 2.1 420 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 334 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 310 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 132 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 159 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 175 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 247 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 183 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 100 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 118 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 129 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 71 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 61 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 32 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 44 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 27 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 32 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 32 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 15 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.78 (Number of atoms: 24) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.78 24 6.2 386 CRMSCA CRN = ALL/NP . . . . . 0.3242 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 153 CRMSCA SURFACE . . . . . . . . 7.71 19 10.8 176 CRMSCA BURIED . . . . . . . . 8.04 5 2.4 210 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.67 96 5.0 1902 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 758 CRMSMC SURFACE . . . . . . . . 7.46 76 8.7 872 CRMSMC BURIED . . . . . . . . 8.41 20 1.9 1030 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 1592 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 1352 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 633 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 764 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 828 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 7.67 96 3.1 3136 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 1245 CRMSALL SURFACE . . . . . . . . 7.46 76 5.2 1468 CRMSALL BURIED . . . . . . . . 8.41 20 1.2 1668 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.119 0.347 0.176 24 6.2 386 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 153 ERRCA SURFACE . . . . . . . . 3.950 0.327 0.166 19 10.8 176 ERRCA BURIED . . . . . . . . 4.761 0.421 0.210 5 2.4 210 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.014 0.342 0.173 96 5.0 1902 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 758 ERRMC SURFACE . . . . . . . . 3.759 0.321 0.163 76 8.7 872 ERRMC BURIED . . . . . . . . 4.983 0.421 0.211 20 1.9 1030 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 1592 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 1352 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 633 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 764 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 828 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.014 0.342 0.173 96 3.1 3136 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 1245 ERRALL SURFACE . . . . . . . . 3.759 0.321 0.163 76 5.2 1468 ERRALL BURIED . . . . . . . . 4.983 0.421 0.211 20 1.2 1668 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 4 9 19 24 386 DISTCA CA (P) 0.00 0.00 1.04 2.33 4.92 386 DISTCA CA (RMS) 0.00 0.00 2.51 3.63 6.09 DISTCA ALL (N) 0 0 11 39 75 96 3136 DISTALL ALL (P) 0.00 0.00 0.35 1.24 2.39 3136 DISTALL ALL (RMS) 0.00 0.00 2.44 3.76 5.92 DISTALL END of the results output