####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 45 ( 180), selected 45 , name T0543TS328_1_1-D2 # Molecule2: number of CA atoms 45 ( 345), selected 45 , name T0543-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS328_1_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 29 96 - 124 4.96 8.90 LONGEST_CONTINUOUS_SEGMENT: 29 97 - 125 4.99 8.90 LCS_AVERAGE: 56.64 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 100 - 108 2.00 9.08 LONGEST_CONTINUOUS_SEGMENT: 9 107 - 115 1.98 8.58 LCS_AVERAGE: 15.60 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 4 101 - 104 0.88 14.71 LONGEST_CONTINUOUS_SEGMENT: 4 105 - 108 0.54 21.86 LONGEST_CONTINUOUS_SEGMENT: 4 110 - 113 0.58 15.08 LONGEST_CONTINUOUS_SEGMENT: 4 113 - 116 0.52 10.82 LONGEST_CONTINUOUS_SEGMENT: 4 118 - 121 0.32 14.04 LONGEST_CONTINUOUS_SEGMENT: 4 124 - 127 1.00 12.60 LONGEST_CONTINUOUS_SEGMENT: 4 127 - 130 0.87 15.86 LCS_AVERAGE: 7.95 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 45 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT T 96 T 96 3 3 29 3 3 3 5 7 7 11 23 23 24 27 28 30 31 32 35 38 41 43 44 LCS_GDT A 97 A 97 3 5 29 3 3 8 10 14 16 19 23 23 24 27 28 30 31 32 35 38 41 43 44 LCS_GDT R 98 R 98 3 5 29 3 3 5 6 7 10 11 16 19 19 27 28 30 31 32 35 38 41 43 44 LCS_GDT G 99 G 99 3 6 29 4 7 8 10 14 16 19 23 23 24 27 28 30 31 32 35 38 41 43 44 LCS_GDT W 100 W 100 3 9 29 3 4 4 7 8 15 19 23 23 24 27 28 30 31 32 35 38 41 43 44 LCS_GDT E 101 E 101 4 9 29 3 7 8 10 14 16 19 23 23 24 27 28 30 31 32 35 38 41 43 44 LCS_GDT C 102 C 102 4 9 29 3 5 8 10 14 16 19 23 23 24 27 28 30 31 32 35 38 41 43 44 LCS_GDT T 103 T 103 4 9 29 3 4 5 8 11 16 19 23 23 24 27 28 30 31 32 35 38 41 43 44 LCS_GDT K 104 K 104 4 9 29 3 4 4 7 11 13 19 23 23 24 27 28 30 31 32 35 38 41 43 44 LCS_GDT D 105 D 105 4 9 29 3 4 4 7 11 13 19 23 23 24 27 28 30 31 32 35 38 41 43 44 LCS_GDT R 106 R 106 4 9 29 3 4 4 4 5 8 9 12 16 20 24 26 28 30 32 34 36 39 43 44 LCS_GDT C 107 C 107 4 9 29 3 5 7 10 14 16 19 23 23 24 27 28 30 31 32 35 38 41 43 44 LCS_GDT G 108 G 108 4 9 29 3 4 7 10 14 16 19 23 23 24 27 28 30 31 32 35 38 41 43 44 LCS_GDT E 109 E 109 3 9 29 3 3 5 8 14 16 19 23 23 24 27 28 30 31 32 35 38 41 43 44 LCS_GDT V 110 V 110 4 9 29 3 4 5 7 10 16 19 23 23 24 27 28 30 31 32 35 38 41 43 44 LCS_GDT R 111 R 111 4 9 29 3 5 8 10 14 16 19 23 23 24 27 28 30 31 32 35 38 41 43 44 LCS_GDT N 112 N 112 4 9 29 3 4 5 9 14 16 19 23 23 24 27 28 30 31 32 35 38 41 43 44 LCS_GDT E 113 E 113 4 9 29 4 7 8 10 14 16 19 23 23 24 27 28 30 31 32 35 38 41 43 44 LCS_GDT E 114 E 114 4 9 29 4 7 8 10 14 16 19 23 23 24 27 28 30 31 32 35 38 41 43 44 LCS_GDT N 115 N 115 4 9 29 4 7 8 10 14 16 19 23 23 24 27 28 30 31 32 35 38 41 43 44 LCS_GDT A 116 A 116 4 7 29 3 4 8 9 14 16 19 23 23 24 27 28 30 31 32 35 38 41 43 44 LCS_GDT C 117 C 117 3 7 29 3 3 5 9 14 16 19 23 23 24 27 28 30 31 32 35 38 41 43 44 LCS_GDT H 118 H 118 4 6 29 4 4 4 5 6 9 11 16 21 22 22 24 28 29 32 34 37 41 43 44 LCS_GDT C 119 C 119 4 6 29 4 4 4 7 10 16 19 23 23 24 27 28 30 31 32 35 38 41 43 44 LCS_GDT S 120 S 120 4 6 29 4 4 4 5 6 10 11 13 15 18 21 24 25 26 30 35 38 41 43 44 LCS_GDT E 121 E 121 4 6 29 4 4 4 5 6 10 11 13 14 20 21 22 25 26 28 35 38 41 43 44 LCS_GDT D 122 D 122 3 6 29 3 3 4 5 6 10 11 13 14 17 20 21 23 26 28 32 37 41 43 44 LCS_GDT C 123 C 123 3 5 29 3 3 3 4 4 5 7 8 11 15 19 20 25 28 30 33 36 40 43 44 LCS_GDT L 124 L 124 4 5 29 3 7 8 9 10 13 14 16 17 18 21 26 29 31 32 35 38 41 43 44 LCS_GDT S 125 S 125 4 5 29 3 7 8 9 10 13 14 16 17 19 24 27 30 31 32 35 38 41 43 44 LCS_GDT R 126 R 126 4 8 20 3 3 4 9 10 13 14 16 17 19 24 27 30 31 32 35 38 41 43 44 LCS_GDT G 127 G 127 4 8 20 3 3 4 6 7 10 12 16 17 20 27 28 30 31 32 35 38 41 43 44 LCS_GDT D 128 D 128 4 8 20 3 3 4 6 8 9 12 16 19 23 27 28 30 31 32 35 38 41 43 44 LCS_GDT C 129 C 129 4 8 20 3 3 4 6 8 9 11 13 18 24 27 28 30 31 32 35 38 41 43 44 LCS_GDT C 130 C 130 4 8 20 3 3 4 6 7 9 11 12 12 13 15 17 20 26 27 33 38 41 43 44 LCS_GDT T 131 T 131 3 8 20 3 3 4 5 8 9 11 12 13 17 20 21 22 26 29 35 38 41 43 44 LCS_GDT N 132 N 132 3 8 20 1 3 3 6 8 9 11 12 14 17 20 21 23 26 29 35 38 41 43 44 LCS_GDT Y 133 Y 133 3 8 20 3 3 3 5 8 9 11 12 12 13 16 20 22 26 28 30 34 41 43 44 LCS_GDT Q 134 Q 134 3 5 20 3 3 3 4 8 9 11 12 12 13 14 16 18 18 24 28 31 34 37 44 LCS_GDT V 135 V 135 3 5 20 3 3 3 4 7 7 11 12 13 16 17 20 24 26 31 35 38 41 43 44 LCS_GDT V 136 V 136 3 4 20 3 3 3 4 5 6 9 12 13 17 20 21 24 29 32 35 38 41 43 44 LCS_GDT C 137 C 137 3 4 20 3 3 3 4 6 7 10 14 17 24 27 28 30 31 32 35 38 41 43 44 LCS_GDT K 138 K 138 3 4 20 3 3 3 6 7 10 13 23 23 24 27 28 30 31 32 35 38 41 43 44 LCS_GDT G 139 G 139 3 4 12 3 3 3 4 8 10 15 23 23 24 27 28 30 31 32 35 38 41 43 44 LCS_GDT E 140 E 140 3 4 5 3 3 3 4 4 4 4 11 13 13 14 17 24 30 30 34 34 35 36 40 LCS_AVERAGE LCS_A: 26.73 ( 7.95 15.60 56.64 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 7 8 10 14 16 19 23 23 24 27 28 30 31 32 35 38 41 43 44 GDT PERCENT_AT 8.89 15.56 17.78 22.22 31.11 35.56 42.22 51.11 51.11 53.33 60.00 62.22 66.67 68.89 71.11 77.78 84.44 91.11 95.56 97.78 GDT RMS_LOCAL 0.26 0.67 0.77 1.27 1.78 2.24 2.60 3.11 3.11 3.33 3.91 4.01 4.48 4.64 4.74 5.65 6.14 6.48 6.64 6.82 GDT RMS_ALL_AT 8.51 10.41 10.48 8.57 8.84 8.53 8.39 8.07 8.07 7.92 7.59 7.55 7.42 7.43 7.60 7.08 6.97 6.95 6.95 6.95 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA T 96 T 96 4.219 3 0.108 0.108 4.330 40.357 23.061 LGA A 97 A 97 2.380 1 0.052 0.052 4.760 49.524 39.619 LGA R 98 R 98 7.263 7 0.180 0.180 7.263 16.905 6.147 LGA G 99 G 99 2.264 0 0.238 0.238 3.594 65.833 65.833 LGA W 100 W 100 3.515 10 0.588 0.588 3.515 54.048 15.442 LGA E 101 E 101 2.424 5 0.158 0.158 2.675 59.048 26.243 LGA C 102 C 102 3.187 2 0.557 0.557 4.018 52.262 34.841 LGA T 103 T 103 2.373 3 0.049 0.049 3.581 63.571 36.327 LGA K 104 K 104 2.815 5 0.490 0.490 4.799 48.929 21.746 LGA D 105 D 105 3.424 4 0.673 0.673 6.207 37.143 18.571 LGA R 106 R 106 6.649 7 0.221 0.221 6.649 20.714 7.532 LGA C 107 C 107 3.615 2 0.067 0.067 3.615 62.143 41.429 LGA G 108 G 108 3.141 0 0.131 0.131 3.967 61.905 61.905 LGA E 109 E 109 1.989 5 0.094 0.094 3.270 69.524 30.899 LGA V 110 V 110 3.212 3 0.142 0.142 3.212 63.214 36.122 LGA R 111 R 111 1.954 7 0.101 0.101 3.827 61.429 22.338 LGA N 112 N 112 3.100 4 0.499 0.499 3.100 61.190 30.595 LGA E 113 E 113 1.337 5 0.792 0.792 2.136 77.262 34.339 LGA E 114 E 114 2.639 5 0.039 0.039 2.841 60.952 27.090 LGA N 115 N 115 1.670 4 0.057 0.057 2.677 66.905 33.452 LGA A 116 A 116 3.537 1 0.618 0.618 3.592 52.143 41.714 LGA C 117 C 117 3.587 2 0.045 0.045 4.203 43.690 29.127 LGA H 118 H 118 6.803 6 0.211 0.211 6.803 21.786 8.714 LGA C 119 C 119 3.741 2 0.039 0.039 5.253 34.524 23.016 LGA S 120 S 120 9.368 2 0.022 0.022 10.311 2.143 1.429 LGA E 121 E 121 11.639 5 0.374 0.374 13.925 0.000 0.000 LGA D 122 D 122 13.225 4 0.718 0.718 14.352 0.000 0.000 LGA C 123 C 123 12.784 2 0.382 0.382 14.281 0.000 0.000 LGA L 124 L 124 11.270 4 0.617 0.617 12.301 0.000 0.000 LGA S 125 S 125 11.885 2 0.049 0.049 12.200 0.000 0.000 LGA R 126 R 126 11.243 7 0.683 0.683 12.772 0.000 0.000 LGA G 127 G 127 9.494 0 0.348 0.348 9.579 1.548 1.548 LGA D 128 D 128 8.108 4 0.441 0.441 8.231 9.048 4.524 LGA C 129 C 129 7.034 2 0.614 0.614 9.179 6.548 4.365 LGA C 130 C 130 13.602 2 0.448 0.448 13.853 0.000 0.000 LGA T 131 T 131 14.575 3 0.693 0.693 14.723 0.000 0.000 LGA N 132 N 132 14.219 4 0.656 0.656 16.414 0.000 0.000 LGA Y 133 Y 133 12.515 8 0.307 0.307 14.727 0.000 0.000 LGA Q 134 Q 134 14.208 5 0.586 0.586 14.208 0.000 0.000 LGA V 135 V 135 13.188 3 0.694 0.694 14.331 0.000 0.000 LGA V 136 V 136 11.736 3 0.624 0.624 12.678 0.000 0.000 LGA C 137 C 137 6.477 2 0.255 0.255 6.995 17.262 11.508 LGA K 138 K 138 4.394 5 0.637 0.637 5.161 34.524 15.344 LGA G 139 G 139 4.328 0 0.313 0.313 7.821 26.190 26.190 LGA E 140 E 140 9.702 5 0.096 0.096 11.642 2.619 1.164 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 45 180 180 100.00 345 180 52.17 45 SUMMARY(RMSD_GDC): 6.940 6.985 6.985 29.886 17.382 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 45 45 4.0 23 3.11 41.667 35.812 0.717 LGA_LOCAL RMSD: 3.106 Number of atoms: 23 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 8.073 Number of assigned atoms: 45 Std_ASGN_ATOMS RMSD: 6.940 Standard rmsd on all 45 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.757103 * X + -0.593652 * Y + 0.272714 * Z + 54.284603 Y_new = 0.023917 * X + 0.391977 * Y + 0.919664 * Z + 142.058365 Z_new = -0.652858 * X + 0.702803 * Y + -0.282568 * Z + 19.667715 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 3.110013 0.711351 1.953077 [DEG: 178.1906 40.7574 111.9031 ] ZXZ: 2.853317 1.857267 -0.748573 [DEG: 163.4830 106.4136 -42.8901 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS328_1_1-D2 REMARK 2: T0543-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS328_1_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 45 45 4.0 23 3.11 35.812 6.94 REMARK ---------------------------------------------------------- MOLECULE T0543TS328_1_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 1 REMARK PFRMAT TS REMARK TARGET T0543 REMARK PARENT 3bz5_A ATOM 381 N THR 96 20.330 86.695 19.939 1.00 3.00 N ATOM 382 CA THR 96 19.407 86.008 20.882 1.00 3.00 C ATOM 383 C THR 96 18.003 85.701 20.331 1.00 3.00 C ATOM 384 O THR 96 17.122 85.198 21.067 1.00 3.00 O ATOM 385 N ALA 97 17.798 85.945 19.041 1.00 3.00 N ATOM 386 CA ALA 97 16.468 85.861 18.459 1.00 3.00 C ATOM 387 C ALA 97 15.995 84.412 18.431 1.00 3.00 C ATOM 388 O ALA 97 16.717 83.545 17.994 1.00 3.00 O ATOM 389 N ARG 98 14.835 84.169 19.033 1.00 3.00 N ATOM 390 CA ARG 98 14.204 82.872 19.081 1.00 3.00 C ATOM 391 C ARG 98 12.944 82.818 18.216 1.00 3.00 C ATOM 392 O ARG 98 12.630 81.754 17.720 1.00 3.00 O ATOM 393 N GLY 99 12.195 83.926 18.113 1.00 3.00 N ATOM 394 CA GLY 99 10.991 84.041 17.262 1.00 3.00 C ATOM 395 C GLY 99 11.106 85.226 16.306 1.00 3.00 C ATOM 396 O GLY 99 11.460 86.294 16.749 1.00 3.00 O ATOM 397 N TRP 100 10.843 85.035 15.006 1.00 3.00 N ATOM 398 CA TRP 100 10.795 86.141 14.006 1.00 3.00 C ATOM 399 C TRP 100 9.528 86.045 13.197 1.00 3.00 C ATOM 400 O TRP 100 9.249 84.982 12.669 1.00 3.00 O ATOM 401 N GLU 101 8.744 87.128 13.132 1.00 3.00 N ATOM 402 CA GLU 101 7.568 87.191 12.245 1.00 3.00 C ATOM 403 C GLU 101 7.683 88.438 11.390 1.00 3.00 C ATOM 404 O GLU 101 7.392 89.519 11.836 1.00 3.00 O ATOM 405 N CYS 102 8.084 88.290 10.158 1.00 3.00 N ATOM 406 CA CYS 102 8.171 89.475 9.257 1.00 3.00 C ATOM 407 C CYS 102 7.246 89.283 8.053 1.00 3.00 C ATOM 408 O CYS 102 7.513 89.799 6.982 1.00 3.00 O ATOM 409 N THR 103 6.108 88.614 8.292 1.00 3.00 N ATOM 410 CA THR 103 5.163 88.264 7.219 1.00 3.00 C ATOM 411 C THR 103 4.414 89.466 6.650 1.00 3.00 C ATOM 412 O THR 103 4.320 90.519 7.291 1.00 3.00 O ATOM 413 N LYS 104 3.956 89.314 5.410 1.00 3.00 N ATOM 414 CA LYS 104 3.178 90.347 4.695 1.00 3.00 C ATOM 415 C LYS 104 3.934 91.684 4.629 1.00 3.00 C ATOM 416 O LYS 104 3.477 92.716 5.180 1.00 3.00 O ATOM 417 N ASP 105 5.130 91.622 4.033 1.00 3.00 N ATOM 418 CA ASP 105 5.939 92.799 3.677 1.00 3.00 C ATOM 419 C ASP 105 6.445 92.628 2.225 1.00 3.00 C ATOM 420 O ASP 105 5.898 91.800 1.527 1.00 3.00 O ATOM 421 N ARG 106 7.381 93.455 1.753 1.00 3.00 N ATOM 422 CA ARG 106 8.062 93.254 0.462 1.00 3.00 C ATOM 423 C ARG 106 9.548 92.871 0.700 1.00 3.00 C ATOM 424 O ARG 106 10.427 93.267 -0.062 1.00 3.00 O ATOM 425 N CYS 107 9.858 92.095 1.736 1.00 3.00 N ATOM 426 CA CYS 107 11.290 91.762 2.014 1.00 3.00 C ATOM 427 C CYS 107 11.826 90.900 0.839 1.00 3.00 C ATOM 428 O CYS 107 11.098 90.026 0.366 1.00 3.00 O ATOM 429 N GLY 108 13.016 91.231 0.315 1.00 3.00 N ATOM 430 CA GLY 108 13.661 90.440 -0.802 1.00 3.00 C ATOM 431 C GLY 108 14.884 89.584 -0.377 1.00 3.00 C ATOM 432 O GLY 108 15.234 88.641 -1.097 1.00 3.00 O ATOM 433 N GLU 109 15.491 89.889 0.777 1.00 3.00 N ATOM 434 CA GLU 109 16.637 89.154 1.324 1.00 3.00 C ATOM 435 C GLU 109 16.472 89.021 2.810 1.00 3.00 C ATOM 436 O GLU 109 16.200 90.041 3.485 1.00 3.00 O ATOM 437 N VAL 110 16.694 87.811 3.335 1.00 3.00 N ATOM 438 CA VAL 110 16.657 87.555 4.789 1.00 3.00 C ATOM 439 C VAL 110 17.883 86.716 5.194 1.00 3.00 C ATOM 440 O VAL 110 18.002 85.553 4.866 1.00 3.00 O ATOM 441 N ARG 111 18.794 87.367 5.896 1.00 3.00 N ATOM 442 CA ARG 111 19.991 86.773 6.398 1.00 3.00 C ATOM 443 C ARG 111 19.734 86.412 7.868 1.00 3.00 C ATOM 444 O ARG 111 19.739 87.290 8.754 1.00 3.00 O ATOM 445 N ASN 112 19.487 85.128 8.106 1.00 3.00 N ATOM 446 CA ASN 112 19.229 84.625 9.481 1.00 3.00 C ATOM 447 C ASN 112 20.383 83.729 9.991 1.00 3.00 C ATOM 448 O ASN 112 20.183 82.895 10.908 1.00 3.00 O ATOM 449 N GLU 113 21.597 83.939 9.443 1.00 3.00 N ATOM 450 CA GLU 113 22.740 83.048 9.785 1.00 3.00 C ATOM 451 C GLU 113 22.365 83.569 11.171 1.00 3.00 C ATOM 452 O GLU 113 22.498 84.783 11.384 1.00 3.00 O ATOM 453 N GLU 114 21.890 82.716 12.088 1.00 3.00 N ATOM 454 CA GLU 114 21.487 83.145 13.416 1.00 3.00 C ATOM 455 C GLU 114 20.018 83.459 13.592 1.00 3.00 C ATOM 456 O GLU 114 19.603 83.787 14.711 1.00 3.00 O ATOM 457 N ASN 115 19.189 83.495 12.540 1.00 3.00 N ATOM 458 CA ASN 115 17.824 84.006 12.660 1.00 3.00 C ATOM 459 C ASN 115 16.771 83.256 11.825 1.00 3.00 C ATOM 460 O ASN 115 17.073 82.905 10.672 1.00 3.00 O ATOM 461 N ALA 116 15.559 83.104 12.346 1.00 3.00 N ATOM 462 CA ALA 116 14.491 82.488 11.544 1.00 3.00 C ATOM 463 C ALA 116 13.144 83.117 11.948 1.00 3.00 C ATOM 464 O ALA 116 12.917 83.273 13.160 1.00 3.00 O ATOM 465 N CYS 117 12.261 83.364 10.967 1.00 3.00 N ATOM 466 CA CYS 117 10.928 83.846 11.389 1.00 3.00 C ATOM 467 C CYS 117 9.904 83.419 10.344 1.00 3.00 C ATOM 468 O CYS 117 10.329 83.004 9.253 1.00 3.00 O ATOM 469 N HIS 118 8.614 83.563 10.676 1.00 3.00 N ATOM 470 CA HIS 118 7.585 83.204 9.710 1.00 3.00 C ATOM 471 C HIS 118 8.020 84.373 8.885 1.00 3.00 C ATOM 472 O HIS 118 8.100 85.483 9.378 1.00 3.00 O ATOM 473 N CYS 119 8.343 84.115 7.640 1.00 3.00 N ATOM 474 CA CYS 119 8.723 85.166 6.715 1.00 3.00 C ATOM 475 C CYS 119 7.844 85.106 5.486 1.00 3.00 C ATOM 476 O CYS 119 8.264 85.621 4.429 1.00 3.00 O ATOM 477 N SER 120 6.607 84.564 5.642 1.00 3.00 N ATOM 478 CA SER 120 5.708 84.349 4.515 1.00 3.00 C ATOM 479 C SER 120 5.151 85.655 3.943 1.00 3.00 C ATOM 480 O SER 120 5.123 86.679 4.618 1.00 3.00 O ATOM 481 N GLU 121 4.739 85.595 2.682 1.00 3.00 N ATOM 482 CA GLU 121 4.132 86.722 1.978 1.00 3.00 C ATOM 483 C GLU 121 5.131 87.870 1.909 1.00 3.00 C ATOM 484 O GLU 121 4.924 88.915 2.442 1.00 3.00 O ATOM 485 N ASP 122 6.243 87.577 1.242 1.00 3.00 N ATOM 486 CA ASP 122 7.342 88.497 0.934 1.00 3.00 C ATOM 487 C ASP 122 7.864 88.207 -0.505 1.00 3.00 C ATOM 488 O ASP 122 7.183 87.489 -1.257 1.00 3.00 O ATOM 489 N CYS 123 9.006 88.778 -0.895 1.00 3.00 N ATOM 490 CA CYS 123 9.601 88.547 -2.237 1.00 3.00 C ATOM 491 C CYS 123 11.004 87.917 -2.136 1.00 3.00 C ATOM 492 O CYS 123 11.932 88.280 -2.903 1.00 3.00 O ATOM 493 N LEU 124 11.115 86.933 -1.226 1.00 3.00 N ATOM 494 CA LEU 124 12.385 86.267 -0.885 1.00 3.00 C ATOM 495 C LEU 124 12.668 85.195 -1.986 1.00 3.00 C ATOM 496 O LEU 124 11.796 84.373 -2.304 1.00 3.00 O ATOM 497 N SER 125 13.841 85.291 -2.627 1.00 3.00 N ATOM 498 CA SER 125 14.257 84.408 -3.735 1.00 3.00 C ATOM 499 C SER 125 15.227 83.294 -3.298 1.00 3.00 C ATOM 500 O SER 125 15.312 82.225 -3.966 1.00 3.00 O ATOM 501 N ARG 126 15.974 83.575 -2.223 1.00 3.00 N ATOM 502 CA ARG 126 16.933 82.677 -1.608 1.00 3.00 C ATOM 503 C ARG 126 16.724 82.708 -0.090 1.00 3.00 C ATOM 504 O ARG 126 16.451 83.760 0.456 1.00 3.00 O ATOM 505 N GLY 127 16.804 81.569 0.583 1.00 3.00 N ATOM 506 CA GLY 127 16.719 81.521 2.052 1.00 3.00 C ATOM 507 C GLY 127 17.671 80.431 2.574 1.00 3.00 C ATOM 508 O GLY 127 17.381 79.212 2.512 1.00 3.00 O ATOM 509 N ASP 128 18.814 80.887 3.072 1.00 3.00 N ATOM 510 CA ASP 128 19.831 80.009 3.631 1.00 3.00 C ATOM 511 C ASP 128 19.519 79.759 5.107 1.00 3.00 C ATOM 512 O ASP 128 19.748 80.631 5.903 1.00 3.00 O ATOM 513 N CYS 129 19.027 78.569 5.441 1.00 3.00 N ATOM 514 CA CYS 129 18.716 78.189 6.840 1.00 3.00 C ATOM 515 C CYS 129 19.711 77.196 7.481 1.00 3.00 C ATOM 516 O CYS 129 19.415 76.629 8.537 1.00 3.00 O ATOM 517 N CYS 130 20.905 77.064 6.897 1.00 3.00 N ATOM 518 CA CYS 130 21.918 76.097 7.382 1.00 3.00 C ATOM 519 C CYS 130 21.144 75.146 8.265 1.00 3.00 C ATOM 520 O CYS 130 20.718 74.099 7.785 1.00 3.00 O ATOM 521 N THR 131 21.001 75.432 9.551 1.00 3.00 N ATOM 522 CA THR 131 20.252 74.540 10.435 1.00 3.00 C ATOM 523 C THR 131 18.868 75.147 10.629 1.00 3.00 C ATOM 524 O THR 131 18.721 76.367 10.531 1.00 3.00 O ATOM 525 N ASN 132 17.854 74.321 10.935 1.00 3.00 N ATOM 526 CA ASN 132 16.496 74.842 11.104 1.00 3.00 C ATOM 527 C ASN 132 16.169 75.449 12.460 1.00 3.00 C ATOM 528 O ASN 132 16.872 75.190 13.442 1.00 3.00 O ATOM 529 N TYR 133 15.091 76.242 12.522 1.00 3.00 N ATOM 530 CA TYR 133 14.672 76.950 13.748 1.00 3.00 C ATOM 531 C TYR 133 13.171 76.838 14.202 1.00 3.00 C ATOM 532 O TYR 133 12.646 75.726 14.338 1.00 3.00 O ATOM 533 N GLN 134 12.525 77.970 14.488 1.00 3.00 N ATOM 534 CA GLN 134 11.128 78.021 14.957 1.00 3.00 C ATOM 535 C GLN 134 10.044 77.642 13.935 1.00 3.00 C ATOM 536 O GLN 134 9.657 78.464 13.089 1.00 3.00 O ATOM 537 N VAL 135 9.459 76.469 14.111 1.00 3.00 N ATOM 538 CA VAL 135 8.427 75.992 13.198 1.00 3.00 C ATOM 539 C VAL 135 8.973 76.857 12.066 1.00 3.00 C ATOM 540 O VAL 135 9.611 77.885 12.327 1.00 3.00 O ATOM 541 N VAL 136 8.675 76.485 10.819 1.00 3.00 N ATOM 542 CA VAL 136 9.116 77.234 9.627 1.00 3.00 C ATOM 543 C VAL 136 7.967 77.492 8.658 1.00 3.00 C ATOM 544 O VAL 136 7.323 76.544 8.205 1.00 3.00 O ATOM 545 N CYS 137 7.815 79.716 5.155 1.00 3.00 N ATOM 546 CA CYS 137 8.354 80.545 4.069 1.00 3.00 C ATOM 547 C CYS 137 7.428 80.505 2.857 1.00 3.00 C ATOM 548 O CYS 137 7.876 80.629 1.724 1.00 3.00 O ATOM 549 N LYS 138 6.117 80.393 3.109 1.00 3.00 N ATOM 550 CA LYS 138 5.122 80.297 2.054 1.00 3.00 C ATOM 551 C LYS 138 4.910 81.642 1.369 1.00 3.00 C ATOM 552 O LYS 138 5.262 82.680 1.897 1.00 3.00 O ATOM 553 N GLY 139 4.348 81.606 0.173 1.00 3.00 N ATOM 554 CA GLY 139 4.094 82.832 -0.633 1.00 3.00 C ATOM 555 C GLY 139 5.318 83.696 -0.730 1.00 3.00 C ATOM 556 O GLY 139 5.318 84.846 -0.303 1.00 3.00 O ATOM 557 N GLU 140 6.385 83.094 -1.242 1.00 3.00 N ATOM 558 CA GLU 140 7.670 83.809 -1.545 1.00 3.00 C ATOM 559 C GLU 140 8.105 83.472 -2.999 1.00 3.00 C ATOM 560 O GLU 140 7.238 83.016 -3.753 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 180 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 87.68 36.4 88 100.0 88 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 96.09 32.3 62 100.0 62 ARMSMC BURIED . . . . . . . . 63.25 46.2 26 100.0 26 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 39 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 36 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 26 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 18 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.94 (Number of atoms: 45) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.94 45 100.0 45 CRMSCA CRN = ALL/NP . . . . . 0.1542 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 6.61 32 100.0 32 CRMSCA BURIED . . . . . . . . 7.69 13 100.0 13 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.99 180 81.4 221 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 6.70 128 82.1 156 CRMSMC BURIED . . . . . . . . 7.65 52 80.0 65 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 165 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 145 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 112 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 53 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 6.99 180 52.2 345 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 6.70 128 53.3 240 CRMSALL BURIED . . . . . . . . 7.65 52 49.5 105 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.593 0.341 0.172 45 100.0 45 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 3.289 0.323 0.163 32 100.0 32 ERRCA BURIED . . . . . . . . 4.341 0.386 0.193 13 100.0 13 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.580 0.335 0.168 180 81.4 221 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 3.296 0.316 0.159 128 82.1 156 ERRMC BURIED . . . . . . . . 4.279 0.382 0.191 52 80.0 65 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 165 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 145 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 112 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 53 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.580 0.335 0.168 180 52.2 345 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 3.296 0.316 0.159 128 53.3 240 ERRALL BURIED . . . . . . . . 4.279 0.382 0.191 52 49.5 105 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 3 13 41 45 45 DISTCA CA (P) 0.00 0.00 6.67 28.89 91.11 45 DISTCA CA (RMS) 0.00 0.00 2.37 3.92 6.43 DISTCA ALL (N) 0 0 12 54 160 180 345 DISTALL ALL (P) 0.00 0.00 3.48 15.65 46.38 345 DISTALL ALL (RMS) 0.00 0.00 2.54 3.83 6.28 DISTALL END of the results output