####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 160), selected 40 , name T0543TS328_1_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS328_1_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 76 - 95 4.82 11.55 LCS_AVERAGE: 48.44 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 63 - 71 1.87 14.95 LCS_AVERAGE: 17.69 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 86 - 90 0.56 13.64 LONGEST_CONTINUOUS_SEGMENT: 5 91 - 95 0.87 17.80 LCS_AVERAGE: 10.06 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 3 5 19 3 3 4 5 6 6 8 12 15 17 18 19 19 20 20 21 22 23 25 26 LCS_GDT S 57 S 57 4 5 19 3 3 4 5 6 8 9 12 15 17 18 19 19 20 20 21 22 23 25 26 LCS_GDT C 58 C 58 4 5 19 3 3 4 5 6 8 9 12 15 17 18 19 19 20 20 21 22 23 25 26 LCS_GDT K 59 K 59 4 5 19 3 3 4 5 6 8 10 12 15 17 18 19 19 20 20 21 22 23 25 26 LCS_GDT G 60 G 60 4 7 19 3 3 5 6 6 8 10 12 15 17 18 19 19 20 20 21 22 23 25 26 LCS_GDT R 61 R 61 3 7 19 3 3 3 5 6 8 10 12 15 17 18 19 19 20 20 21 22 23 25 26 LCS_GDT C 62 C 62 3 7 19 3 3 4 5 6 11 11 12 15 17 18 19 19 20 20 21 22 23 25 26 LCS_GDT F 63 F 63 3 9 19 3 4 6 8 8 11 11 12 15 17 18 19 19 20 20 21 22 23 25 26 LCS_GDT E 64 E 64 3 9 19 3 3 6 8 8 11 11 12 15 17 18 19 19 20 20 21 22 23 24 26 LCS_GDT L 65 L 65 3 9 19 3 3 4 6 8 11 11 12 15 17 18 19 19 20 20 21 22 23 25 26 LCS_GDT Q 66 Q 66 4 9 19 3 4 6 8 8 11 11 12 15 17 18 19 19 20 20 21 22 23 24 25 LCS_GDT E 67 E 67 4 9 19 3 4 5 8 8 11 11 12 15 17 18 19 19 20 20 21 22 23 25 26 LCS_GDT V 68 V 68 4 9 19 3 4 6 8 8 11 11 12 15 17 18 19 19 20 20 21 22 23 26 27 LCS_GDT G 69 G 69 4 9 19 3 4 6 8 8 11 11 12 15 17 18 19 19 20 20 21 22 23 26 27 LCS_GDT P 70 P 70 4 9 19 2 4 6 8 8 11 11 11 15 17 18 19 19 20 20 21 22 23 25 27 LCS_GDT P 71 P 71 4 9 19 3 3 5 6 8 11 11 12 15 17 18 19 19 20 20 21 22 23 25 26 LCS_GDT D 72 D 72 4 8 19 4 4 5 5 8 9 9 12 15 17 18 19 19 20 20 21 22 23 26 27 LCS_GDT C 73 C 73 4 8 19 4 4 4 5 8 9 9 12 15 17 18 19 19 20 20 21 22 23 26 27 LCS_GDT R 74 R 74 4 8 19 4 4 4 5 8 9 9 9 10 10 11 11 14 14 16 19 22 22 26 27 LCS_GDT C 75 C 75 4 8 14 4 4 5 5 8 9 9 9 10 10 11 12 14 14 16 17 20 21 26 27 LCS_GDT D 76 D 76 3 8 20 3 3 5 5 8 9 9 9 10 10 11 13 15 17 19 20 22 22 26 27 LCS_GDT N 77 N 77 3 8 20 3 3 4 5 8 9 9 10 11 14 18 19 19 20 20 21 22 22 26 27 LCS_GDT L 78 L 78 3 6 20 0 3 4 5 7 9 10 10 11 14 18 19 19 20 20 21 22 22 26 27 LCS_GDT C 79 C 79 4 5 20 0 4 5 8 8 11 11 12 16 17 18 19 19 20 20 21 22 23 26 27 LCS_GDT K 80 K 80 4 6 20 3 4 4 4 7 9 10 12 16 17 18 19 19 20 20 21 22 23 26 27 LCS_GDT S 81 S 81 4 7 20 3 4 5 6 7 9 10 12 16 17 18 19 19 20 20 21 22 23 26 27 LCS_GDT Y 82 Y 82 4 7 20 3 4 5 6 7 9 10 12 16 17 18 19 19 20 20 21 22 23 26 27 LCS_GDT S 83 S 83 4 7 20 3 4 5 6 7 9 10 12 16 17 18 19 19 20 20 21 22 23 26 27 LCS_GDT S 84 S 84 4 7 20 3 4 5 6 7 9 10 12 16 17 18 19 19 20 20 21 22 23 26 27 LCS_GDT C 85 C 85 4 7 20 3 3 5 6 7 9 10 12 16 17 18 19 19 20 20 21 22 23 26 27 LCS_GDT C 86 C 86 5 7 20 4 5 5 6 6 9 10 12 16 17 17 19 19 20 20 21 22 23 26 27 LCS_GDT H 87 H 87 5 7 20 4 5 5 6 7 9 10 12 16 17 18 19 19 20 20 21 22 22 26 27 LCS_GDT D 88 D 88 5 6 20 4 5 5 6 6 9 10 12 16 17 18 19 19 20 20 21 22 22 26 27 LCS_GDT F 89 F 89 5 5 20 4 5 5 6 7 9 10 12 16 17 18 19 19 20 20 21 22 22 26 27 LCS_GDT D 90 D 90 5 6 20 3 5 5 6 6 7 10 12 16 17 18 19 19 20 20 21 22 22 26 27 LCS_GDT E 91 E 91 5 6 20 4 4 5 5 5 9 10 12 16 17 18 19 19 20 20 21 22 22 26 27 LCS_GDT L 92 L 92 5 6 20 4 4 5 5 5 7 9 12 16 17 18 19 19 20 20 21 22 22 26 27 LCS_GDT C 93 C 93 5 6 20 4 4 5 5 5 5 6 8 11 17 18 19 19 20 20 21 22 22 26 27 LCS_GDT L 94 L 94 5 6 20 4 4 5 5 5 5 7 10 16 17 18 19 19 20 20 21 22 22 26 27 LCS_GDT K 95 K 95 5 6 20 3 3 5 5 5 5 7 12 16 17 18 19 19 20 20 21 22 22 26 27 LCS_AVERAGE LCS_A: 25.40 ( 10.06 17.69 48.44 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 6 8 8 11 11 12 16 17 18 19 19 20 20 21 22 23 26 27 GDT PERCENT_AT 10.00 12.50 15.00 20.00 20.00 27.50 27.50 30.00 40.00 42.50 45.00 47.50 47.50 50.00 50.00 52.50 55.00 57.50 65.00 67.50 GDT RMS_LOCAL 0.33 0.56 1.02 1.40 1.40 2.28 2.28 2.68 3.41 3.50 3.63 3.85 3.85 4.42 4.14 4.69 5.49 6.07 6.97 7.17 GDT RMS_ALL_AT 17.66 13.64 16.00 15.10 15.10 14.07 14.07 13.31 12.39 12.17 12.14 12.24 12.24 11.78 12.40 12.56 12.82 12.59 11.73 11.87 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 25.592 0 0.252 0.252 25.778 0.000 0.000 LGA S 57 S 57 21.980 2 0.150 0.150 23.224 0.000 0.000 LGA C 58 C 58 15.368 2 0.596 0.596 17.435 0.000 0.000 LGA K 59 K 59 18.565 5 0.165 0.165 19.290 0.000 0.000 LGA G 60 G 60 16.880 0 0.171 0.171 17.049 0.000 0.000 LGA R 61 R 61 16.271 7 0.696 0.696 16.478 0.000 0.000 LGA C 62 C 62 15.764 2 0.414 0.414 15.999 0.000 0.000 LGA F 63 F 63 11.002 7 0.685 0.685 12.840 0.000 0.000 LGA E 64 E 64 11.660 5 0.464 0.464 11.660 0.833 0.370 LGA L 65 L 65 9.359 4 0.670 0.670 10.969 0.476 0.238 LGA Q 66 Q 66 10.297 5 0.679 0.679 10.297 0.595 0.265 LGA E 67 E 67 9.327 5 0.227 0.227 9.716 1.190 0.529 LGA V 68 V 68 10.820 3 0.317 0.317 13.841 0.119 0.068 LGA G 69 G 69 15.928 0 0.364 0.364 18.240 0.000 0.000 LGA P 70 P 70 21.174 3 0.616 0.616 25.067 0.000 0.000 LGA P 71 P 71 23.092 3 0.218 0.218 23.710 0.000 0.000 LGA D 72 D 72 23.007 4 0.196 0.196 23.007 0.000 0.000 LGA C 73 C 73 20.521 2 0.050 0.050 21.592 0.000 0.000 LGA R 74 R 74 20.952 7 0.069 0.069 20.952 0.000 0.000 LGA C 75 C 75 19.747 2 0.566 0.566 20.356 0.000 0.000 LGA D 76 D 76 17.627 4 0.611 0.611 18.400 0.000 0.000 LGA N 77 N 77 12.818 4 0.652 0.652 14.478 0.119 0.060 LGA L 78 L 78 10.962 4 0.566 0.566 12.028 0.000 0.000 LGA C 79 C 79 5.566 2 0.335 0.335 6.515 28.810 19.206 LGA K 80 K 80 3.005 5 0.601 0.601 3.878 54.048 24.021 LGA S 81 S 81 1.393 2 0.348 0.348 2.249 77.381 51.587 LGA Y 82 Y 82 2.528 8 0.071 0.071 3.586 61.667 20.556 LGA S 83 S 83 2.530 2 0.525 0.525 2.530 73.333 48.889 LGA S 84 S 84 1.451 2 0.226 0.226 2.304 72.976 48.651 LGA C 85 C 85 2.183 2 0.516 0.516 2.183 77.619 51.746 LGA C 86 C 86 3.866 2 0.679 0.679 3.866 57.500 38.333 LGA H 87 H 87 0.641 6 0.141 0.141 2.819 73.333 29.333 LGA D 88 D 88 2.918 4 0.000 0.000 2.918 64.881 32.440 LGA F 89 F 89 1.636 7 0.553 0.553 4.070 68.690 24.978 LGA D 90 D 90 4.314 4 0.659 0.659 4.314 50.357 25.179 LGA E 91 E 91 3.251 5 0.453 0.453 4.014 46.905 20.847 LGA L 92 L 92 6.470 4 0.086 0.086 8.426 15.833 7.917 LGA C 93 C 93 8.304 2 0.120 0.120 8.316 6.667 4.444 LGA L 94 L 94 5.986 4 0.119 0.119 6.622 23.095 11.548 LGA K 95 K 95 6.153 5 0.691 0.691 7.091 16.429 7.302 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 160 52.81 40 SUMMARY(RMSD_GDC): 10.216 10.184 10.184 21.821 11.713 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 12 2.68 28.750 27.624 0.431 LGA_LOCAL RMSD: 2.683 Number of atoms: 12 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 13.307 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 10.216 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.392807 * X + -0.669732 * Y + 0.630208 * Z + 41.182415 Y_new = -0.518269 * X + -0.727317 * Y + -0.449896 * Z + 70.991089 Z_new = 0.759670 * X + -0.149895 * Y + -0.632797 * Z + -38.426342 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.922245 -0.862806 -2.909003 [DEG: -52.8408 -49.4352 -166.6736 ] ZXZ: 0.950812 2.255957 1.765610 [DEG: 54.4775 129.2568 101.1620 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS328_1_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS328_1_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 12 2.68 27.624 10.22 REMARK ---------------------------------------------------------- MOLECULE T0543TS328_1_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 1 REMARK PFRMAT TS REMARK TARGET T0543 REMARK PARENT 3bz5_A ATOM 221 N GLY 56 9.771 76.927 16.782 1.00 3.00 N ATOM 222 CA GLY 56 9.522 77.925 17.839 1.00 3.00 C ATOM 223 C GLY 56 9.817 77.406 19.272 1.00 3.00 C ATOM 224 O GLY 56 10.108 78.231 20.168 1.00 3.00 O ATOM 225 N SER 57 9.691 76.079 19.491 1.00 3.00 N ATOM 226 CA SER 57 9.999 75.418 20.768 1.00 3.00 C ATOM 227 C SER 57 10.925 74.214 20.543 1.00 3.00 C ATOM 228 O SER 57 10.479 73.155 20.129 1.00 3.00 O ATOM 229 N CYS 58 12.211 74.390 20.833 1.00 3.00 N ATOM 230 CA CYS 58 13.188 73.308 20.819 1.00 3.00 C ATOM 231 C CYS 58 13.521 72.969 22.258 1.00 3.00 C ATOM 232 O CYS 58 13.910 73.846 22.997 1.00 3.00 O ATOM 233 N LYS 59 13.328 71.711 22.644 1.00 3.00 N ATOM 234 CA LYS 59 13.735 71.198 23.932 1.00 3.00 C ATOM 235 C LYS 59 14.528 69.873 23.746 1.00 3.00 C ATOM 236 O LYS 59 13.952 68.779 23.632 1.00 3.00 O ATOM 237 N GLY 60 15.853 70.001 23.735 1.00 3.00 N ATOM 238 CA GLY 60 16.746 68.858 23.783 1.00 3.00 C ATOM 239 C GLY 60 17.426 68.787 25.148 1.00 3.00 C ATOM 240 O GLY 60 18.614 68.453 25.245 1.00 3.00 O ATOM 241 N ARG 61 16.663 69.024 26.215 1.00 3.00 N ATOM 242 CA ARG 61 17.195 68.882 27.545 1.00 3.00 C ATOM 243 C ARG 61 17.550 67.419 27.807 1.00 3.00 C ATOM 244 O ARG 61 17.175 66.524 27.043 1.00 3.00 O ATOM 245 N CYS 62 18.326 67.216 28.870 1.00 3.00 N ATOM 246 CA CYS 62 18.757 65.894 29.353 1.00 3.00 C ATOM 247 C CYS 62 19.161 64.841 28.282 1.00 3.00 C ATOM 248 O CYS 62 18.751 63.694 28.322 1.00 3.00 O ATOM 249 N PHE 63 19.986 65.291 27.343 1.00 3.00 N ATOM 250 CA PHE 63 20.672 64.439 26.369 1.00 3.00 C ATOM 251 C PHE 63 22.174 64.426 26.677 1.00 3.00 C ATOM 252 O PHE 63 22.547 64.786 27.788 1.00 3.00 O ATOM 253 N GLU 64 23.009 63.910 25.776 1.00 3.00 N ATOM 254 CA GLU 64 24.466 63.925 25.968 1.00 3.00 C ATOM 255 C GLU 64 25.092 64.682 24.778 1.00 3.00 C ATOM 256 O GLU 64 26.060 64.224 24.185 1.00 3.00 O ATOM 257 N LEU 65 24.521 65.861 24.473 1.00 3.00 N ATOM 258 CA LEU 65 25.002 66.751 23.392 1.00 3.00 C ATOM 259 C LEU 65 26.247 67.532 23.834 1.00 3.00 C ATOM 260 O LEU 65 26.421 67.774 25.042 1.00 3.00 O ATOM 261 N GLN 66 27.115 67.878 22.862 1.00 3.00 N ATOM 262 CA GLN 66 28.320 68.723 23.077 1.00 3.00 C ATOM 263 C GLN 66 28.196 70.101 22.420 1.00 3.00 C ATOM 264 O GLN 66 28.960 71.002 22.743 1.00 3.00 O ATOM 265 N GLU 67 27.296 70.236 21.454 1.00 3.00 N ATOM 266 CA GLU 67 26.965 71.518 20.826 1.00 3.00 C ATOM 267 C GLU 67 25.471 71.519 20.369 1.00 3.00 C ATOM 268 O GLU 67 24.810 70.456 20.412 1.00 3.00 O ATOM 269 N VAL 68 24.914 72.695 20.022 1.00 3.00 N ATOM 270 CA VAL 68 23.552 72.756 19.404 1.00 3.00 C ATOM 271 C VAL 68 23.423 73.932 18.453 1.00 3.00 C ATOM 272 O VAL 68 23.184 75.073 18.869 1.00 3.00 O ATOM 273 N GLY 69 23.566 73.641 17.164 1.00 3.00 N ATOM 274 CA GLY 69 23.460 74.663 16.167 1.00 3.00 C ATOM 275 C GLY 69 21.963 74.998 15.897 1.00 3.00 C ATOM 276 O GLY 69 21.231 74.209 15.270 1.00 3.00 O ATOM 277 N PRO 70 21.561 76.176 16.397 1.00 3.00 N ATOM 278 CA PRO 70 20.261 76.813 16.115 1.00 3.00 C ATOM 279 C PRO 70 20.387 78.038 15.143 1.00 3.00 C ATOM 280 O PRO 70 19.434 78.804 14.996 1.00 3.00 O ATOM 281 N PRO 71 21.529 78.182 14.449 1.00 3.00 N ATOM 282 CA PRO 71 21.745 79.322 13.553 1.00 3.00 C ATOM 283 C PRO 71 20.453 79.864 12.945 1.00 3.00 C ATOM 284 O PRO 71 20.501 81.009 12.489 1.00 3.00 O ATOM 285 N ASP 72 19.380 79.082 12.941 1.00 3.00 N ATOM 286 CA ASP 72 18.072 79.536 12.467 1.00 3.00 C ATOM 287 C ASP 72 17.065 79.230 13.583 1.00 3.00 C ATOM 288 O ASP 72 16.834 78.052 13.873 1.00 3.00 O ATOM 289 N CYS 73 16.480 80.241 14.219 1.00 3.00 N ATOM 290 CA CYS 73 15.549 80.032 15.313 1.00 3.00 C ATOM 291 C CYS 73 14.157 80.562 15.049 1.00 3.00 C ATOM 292 O CYS 73 14.027 81.686 14.591 1.00 3.00 O ATOM 293 N ARG 74 13.132 79.761 15.338 1.00 3.00 N ATOM 294 CA ARG 74 11.761 80.177 15.080 1.00 3.00 C ATOM 295 C ARG 74 11.080 80.552 16.385 1.00 3.00 C ATOM 296 O ARG 74 11.260 79.872 17.417 1.00 3.00 O ATOM 297 N CYS 75 10.245 81.582 16.317 1.00 3.00 N ATOM 298 CA CYS 75 9.387 82.023 17.415 1.00 3.00 C ATOM 299 C CYS 75 10.210 82.299 18.659 1.00 3.00 C ATOM 300 O CYS 75 11.015 83.214 18.796 1.00 3.00 O ATOM 301 N ASP 76 10.147 81.589 19.752 1.00 3.00 N ATOM 302 CA ASP 76 10.932 81.705 20.977 1.00 3.00 C ATOM 303 C ASP 76 11.398 81.101 22.299 1.00 3.00 C ATOM 304 O ASP 76 11.609 81.828 23.259 1.00 3.00 O ATOM 305 N ASN 77 11.502 79.777 22.358 1.00 3.00 N ATOM 306 CA ASN 77 12.002 79.083 23.548 1.00 3.00 C ATOM 307 C ASN 77 13.006 78.037 23.218 1.00 3.00 C ATOM 308 O ASN 77 12.702 77.148 22.418 1.00 3.00 O ATOM 309 N LEU 78 14.159 78.090 23.890 1.00 3.00 N ATOM 310 CA LEU 78 15.218 77.068 23.750 1.00 3.00 C ATOM 311 C LEU 78 15.587 76.502 25.117 1.00 3.00 C ATOM 312 O LEU 78 15.952 77.267 26.019 1.00 3.00 O ATOM 313 N CYS 79 18.132 73.648 26.367 1.00 3.00 N ATOM 314 CA CYS 79 19.210 72.641 26.165 1.00 3.00 C ATOM 315 C CYS 79 19.902 72.357 27.477 1.00 3.00 C ATOM 316 O CYS 79 21.096 72.055 27.491 1.00 3.00 O ATOM 317 N LYS 80 19.130 72.400 28.576 1.00 3.00 N ATOM 318 CA LYS 80 19.668 72.240 29.900 1.00 3.00 C ATOM 319 C LYS 80 19.963 70.769 30.198 1.00 3.00 C ATOM 320 O LYS 80 19.319 69.865 29.671 1.00 3.00 O ATOM 321 N SER 81 20.948 70.568 31.064 1.00 3.00 N ATOM 322 CA SER 81 21.399 69.241 31.528 1.00 3.00 C ATOM 323 C SER 81 21.981 68.295 30.441 1.00 3.00 C ATOM 324 O SER 81 21.936 67.075 30.589 1.00 3.00 O ATOM 325 N TYR 82 22.544 68.878 29.386 1.00 3.00 N ATOM 326 CA TYR 82 23.377 68.126 28.419 1.00 3.00 C ATOM 327 C TYR 82 24.803 67.912 28.948 1.00 3.00 C ATOM 328 O TYR 82 25.522 67.033 28.482 1.00 3.00 O ATOM 329 N SER 83 25.212 68.792 29.862 1.00 3.00 N ATOM 330 CA SER 83 26.486 68.755 30.607 1.00 3.00 C ATOM 331 C SER 83 27.729 69.212 29.830 1.00 3.00 C ATOM 332 O SER 83 28.550 69.883 30.437 1.00 3.00 O ATOM 333 N SER 84 27.840 68.906 28.530 1.00 3.00 N ATOM 334 CA SER 84 29.076 69.136 27.747 1.00 3.00 C ATOM 335 C SER 84 29.614 70.000 26.604 1.00 3.00 C ATOM 336 O SER 84 30.814 69.978 26.325 1.00 3.00 O ATOM 337 N CYS 85 28.743 70.767 25.957 1.00 3.00 N ATOM 338 CA CYS 85 29.168 71.644 24.862 1.00 3.00 C ATOM 339 C CYS 85 28.625 73.063 25.015 1.00 3.00 C ATOM 340 O CYS 85 28.099 73.657 24.067 1.00 3.00 O ATOM 341 N CYS 86 28.769 73.650 26.216 1.00 3.00 N ATOM 342 CA CYS 86 28.276 75.007 26.469 1.00 3.00 C ATOM 343 C CYS 86 28.860 76.098 25.578 1.00 3.00 C ATOM 344 O CYS 86 28.211 77.119 25.337 1.00 3.00 O ATOM 345 N HIS 87 30.082 75.881 25.082 1.00 9.00 N ATOM 346 CA HIS 87 30.728 76.872 24.224 1.00 9.00 C ATOM 347 C HIS 87 30.145 76.897 22.815 1.00 9.00 C ATOM 348 O HIS 87 30.530 77.740 22.006 1.00 9.00 O ATOM 349 N ASP 88 29.225 75.986 22.529 1.00 3.00 N ATOM 350 CA ASP 88 28.608 75.940 21.200 1.00 3.00 C ATOM 351 C ASP 88 27.229 76.588 21.161 1.00 3.00 C ATOM 352 O ASP 88 26.436 76.343 20.247 1.00 3.00 O ATOM 353 N PHE 89 26.947 77.428 22.151 1.00 3.00 N ATOM 354 CA PHE 89 25.672 78.128 22.223 1.00 3.00 C ATOM 355 C PHE 89 25.850 79.498 21.585 1.00 3.00 C ATOM 356 O PHE 89 26.727 80.261 21.969 1.00 3.00 O ATOM 357 N ASP 90 25.005 79.821 20.612 1.00 3.00 N ATOM 358 CA ASP 90 25.112 81.109 19.953 1.00 3.00 C ATOM 359 C ASP 90 23.642 81.296 19.711 1.00 3.00 C ATOM 360 O ASP 90 23.074 80.510 18.990 1.00 3.00 O ATOM 361 N GLU 91 23.034 82.304 20.349 1.00 3.00 N ATOM 362 CA GLU 91 21.613 82.716 20.071 1.00 3.00 C ATOM 363 C GLU 91 21.514 84.168 19.497 1.00 3.00 C ATOM 364 O GLU 91 20.456 84.806 19.598 1.00 3.00 O ATOM 365 N LEU 92 22.592 84.674 18.884 1.00 3.00 N ATOM 366 CA LEU 92 22.575 86.008 18.305 1.00 3.00 C ATOM 367 C LEU 92 21.553 86.133 17.149 1.00 3.00 C ATOM 368 O LEU 92 20.987 87.223 16.976 1.00 3.00 O ATOM 369 N CYS 93 21.335 85.056 16.343 1.00 3.00 N ATOM 370 CA CYS 93 20.257 85.165 15.335 1.00 3.00 C ATOM 371 C CYS 93 18.812 84.988 15.857 1.00 3.00 C ATOM 372 O CYS 93 17.896 85.309 15.130 1.00 3.00 O ATOM 373 N LEU 94 18.609 84.523 17.086 1.00 3.00 N ATOM 374 CA LEU 94 17.257 84.242 17.594 1.00 3.00 C ATOM 375 C LEU 94 16.624 85.481 18.215 1.00 3.00 C ATOM 376 O LEU 94 16.337 85.533 19.401 1.00 3.00 O ATOM 377 N LYS 95 16.288 86.427 17.351 1.00 3.00 N ATOM 378 CA LYS 95 15.717 87.727 17.767 1.00 3.00 C ATOM 379 C LYS 95 14.354 87.652 18.443 1.00 3.00 C ATOM 380 O LYS 95 13.971 88.625 19.078 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 160 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 91.58 30.8 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 90.05 28.6 56 100.0 56 ARMSMC BURIED . . . . . . . . 95.35 36.4 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 25 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 18 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 10.22 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 10.22 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.2554 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 10.08 29 100.0 29 CRMSCA BURIED . . . . . . . . 10.56 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 10.19 160 81.2 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 10.13 116 81.7 142 CRMSMC BURIED . . . . . . . . 10.34 44 80.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 143 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 103 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.19 160 52.8 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 10.13 116 53.0 219 CRMSALL BURIED . . . . . . . . 10.34 44 52.4 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.800 0.507 0.254 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 6.722 0.510 0.255 29 100.0 29 ERRCA BURIED . . . . . . . . 7.008 0.501 0.251 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.802 0.510 0.255 160 81.2 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 6.759 0.511 0.255 116 81.7 142 ERRMC BURIED . . . . . . . . 6.916 0.507 0.254 44 80.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 143 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 103 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.802 0.510 0.255 160 52.8 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 6.759 0.511 0.255 116 53.0 219 ERRALL BURIED . . . . . . . . 6.916 0.507 0.254 44 52.4 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 0 17 40 40 DISTCA CA (P) 0.00 0.00 0.00 0.00 42.50 40 DISTCA CA (RMS) 0.00 0.00 0.00 0.00 7.86 DISTCA ALL (N) 0 0 0 1 68 160 303 DISTALL ALL (P) 0.00 0.00 0.00 0.33 22.44 303 DISTALL ALL (RMS) 0.00 0.00 0.00 4.97 7.96 DISTALL END of the results output