####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS324_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS324_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 69 - 88 4.96 12.28 LCS_AVERAGE: 45.38 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 88 - 95 1.82 11.95 LCS_AVERAGE: 16.69 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 90 - 95 0.98 12.37 LCS_AVERAGE: 11.44 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 3 7 16 2 3 4 5 5 8 10 11 13 16 19 22 23 25 28 31 31 33 35 37 LCS_GDT S 57 S 57 3 7 16 3 3 4 6 6 8 10 11 14 17 19 22 24 25 29 31 31 33 35 37 LCS_GDT C 58 C 58 5 7 16 3 5 5 6 6 8 10 11 14 17 19 23 24 25 29 31 31 33 35 37 LCS_GDT K 59 K 59 5 7 16 3 5 5 6 6 7 7 9 12 16 18 23 24 25 29 31 31 33 35 37 LCS_GDT G 60 G 60 5 7 16 3 5 5 6 6 7 11 15 17 18 18 23 24 25 29 31 31 33 35 37 LCS_GDT R 61 R 61 5 7 16 3 5 5 6 7 10 12 15 17 18 19 23 24 25 29 31 31 33 35 37 LCS_GDT C 62 C 62 5 7 16 3 5 5 6 7 10 12 15 17 18 19 23 24 25 29 31 31 33 35 37 LCS_GDT F 63 F 63 4 6 16 3 6 6 8 10 10 12 15 17 18 19 23 24 25 29 31 31 33 35 37 LCS_GDT E 64 E 64 4 6 17 3 4 4 5 10 10 10 12 14 15 18 20 23 25 29 31 31 33 35 37 LCS_GDT L 65 L 65 4 6 17 3 4 4 5 7 7 8 11 12 13 14 15 16 21 22 26 30 32 33 33 LCS_GDT Q 66 Q 66 4 6 17 3 4 4 8 10 10 10 12 14 15 16 19 22 25 29 31 31 33 35 37 LCS_GDT E 67 E 67 4 6 17 3 3 4 6 7 10 12 15 17 18 19 23 24 25 29 31 31 33 35 37 LCS_GDT V 68 V 68 4 4 17 3 3 5 6 7 10 12 15 17 18 19 23 24 25 29 31 31 33 35 37 LCS_GDT G 69 G 69 4 6 20 3 3 5 6 7 10 12 15 17 18 19 23 24 25 29 31 31 33 35 37 LCS_GDT P 70 P 70 4 6 20 2 3 5 6 7 9 11 12 14 17 19 23 24 25 28 31 31 33 35 37 LCS_GDT P 71 P 71 4 6 20 0 4 5 6 7 9 9 11 12 13 17 18 19 21 24 28 29 32 35 37 LCS_GDT D 72 D 72 4 6 20 3 4 5 6 7 9 9 11 12 13 14 16 18 21 24 28 29 32 35 37 LCS_GDT C 73 C 73 4 6 20 3 4 5 6 7 9 9 11 12 13 14 15 18 20 23 28 29 32 35 37 LCS_GDT R 74 R 74 4 7 20 3 4 5 5 7 9 9 11 12 13 14 15 18 20 20 22 24 28 32 37 LCS_GDT C 75 C 75 4 7 20 3 4 5 6 6 9 9 11 12 14 15 16 18 20 20 22 25 31 32 37 LCS_GDT D 76 D 76 5 7 20 4 5 5 6 7 9 10 11 13 14 15 16 18 20 20 24 30 31 35 37 LCS_GDT N 77 N 77 5 7 20 4 5 5 6 7 9 11 12 13 14 15 16 19 25 29 31 31 33 35 37 LCS_GDT L 78 L 78 5 7 20 4 5 5 6 6 9 11 12 13 14 15 16 19 25 29 31 31 33 35 37 LCS_GDT C 79 C 79 5 7 20 5 5 5 6 6 7 9 11 13 14 15 16 18 23 29 31 31 33 35 37 LCS_GDT K 80 K 80 5 7 20 5 5 5 6 7 9 11 12 13 14 15 18 23 25 29 31 31 33 35 37 LCS_GDT S 81 S 81 5 5 20 5 5 5 6 6 8 11 12 13 14 15 20 23 25 29 31 31 33 35 37 LCS_GDT Y 82 Y 82 5 6 20 5 5 5 6 7 10 12 14 15 17 19 23 24 25 29 31 31 33 35 37 LCS_GDT S 83 S 83 5 6 20 5 5 5 6 7 10 12 15 17 18 19 23 24 25 29 31 31 33 35 37 LCS_GDT S 84 S 84 3 6 20 3 3 4 5 7 10 12 15 17 18 19 23 24 25 29 31 31 33 35 37 LCS_GDT C 85 C 85 4 6 20 3 3 4 6 7 10 12 15 17 18 19 23 24 25 29 31 31 33 35 37 LCS_GDT C 86 C 86 4 6 20 3 3 5 6 7 9 11 15 17 18 18 23 24 25 29 31 31 33 35 37 LCS_GDT H 87 H 87 4 6 20 3 4 4 6 7 9 11 15 17 18 18 23 24 25 29 31 31 33 35 37 LCS_GDT D 88 D 88 4 8 20 3 4 4 6 7 9 11 15 16 17 17 19 21 24 29 30 31 33 35 37 LCS_GDT F 89 F 89 5 8 17 4 5 6 8 10 10 11 15 17 18 19 23 24 25 29 31 31 33 35 37 LCS_GDT D 90 D 90 6 8 16 4 5 6 8 10 10 11 15 17 18 19 23 24 25 29 31 31 33 35 37 LCS_GDT E 91 E 91 6 8 16 4 6 6 8 10 10 11 15 17 18 19 23 24 25 29 31 31 33 35 37 LCS_GDT L 92 L 92 6 8 16 4 6 6 8 10 10 12 15 17 18 19 23 24 25 29 31 31 33 35 37 LCS_GDT C 93 C 93 6 8 16 3 6 6 8 10 10 12 15 17 18 19 23 24 25 29 31 31 33 35 37 LCS_GDT L 94 L 94 6 8 16 3 6 6 8 10 10 10 15 16 18 18 23 24 25 27 29 29 33 35 36 LCS_GDT K 95 K 95 6 8 16 3 6 6 8 10 10 10 12 14 17 17 23 24 25 27 31 31 33 35 37 LCS_AVERAGE LCS_A: 24.50 ( 11.44 16.69 45.38 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 6 6 8 10 10 12 15 17 18 19 23 24 25 29 31 31 33 35 37 GDT PERCENT_AT 12.50 15.00 15.00 20.00 25.00 25.00 30.00 37.50 42.50 45.00 47.50 57.50 60.00 62.50 72.50 77.50 77.50 82.50 87.50 92.50 GDT RMS_LOCAL 0.15 0.67 0.67 1.36 1.62 1.62 2.50 3.03 3.29 3.52 3.92 4.38 4.51 4.76 5.66 5.89 5.89 6.12 6.50 6.89 GDT RMS_ALL_AT 22.00 14.47 14.47 12.75 13.19 13.19 8.11 10.19 8.60 8.72 8.20 8.33 8.26 8.05 7.79 7.46 7.46 7.48 7.33 7.27 # Checking swapping # possible swapping detected: F 63 F 63 # possible swapping detected: E 64 E 64 # possible swapping detected: D 76 D 76 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 15.027 0 0.245 0.245 15.364 0.000 0.000 LGA S 57 S 57 12.149 0 0.601 0.747 13.278 1.190 0.794 LGA C 58 C 58 8.958 0 0.192 0.792 10.940 7.500 5.000 LGA K 59 K 59 8.050 0 0.616 0.810 11.651 13.095 6.138 LGA G 60 G 60 3.682 0 0.200 0.200 5.494 36.071 36.071 LGA R 61 R 61 4.321 0 0.300 1.146 15.021 42.262 17.229 LGA C 62 C 62 2.968 0 0.611 1.045 7.743 49.405 39.365 LGA F 63 F 63 3.725 0 0.606 0.466 8.642 38.929 21.775 LGA E 64 E 64 7.504 0 0.086 1.298 8.454 13.214 10.000 LGA L 65 L 65 10.791 0 0.054 1.446 17.132 0.357 0.179 LGA Q 66 Q 66 9.449 0 0.614 1.258 14.468 8.095 3.598 LGA E 67 E 67 3.374 0 0.605 0.786 8.545 48.333 32.381 LGA V 68 V 68 2.650 0 0.575 0.649 5.021 51.548 53.061 LGA G 69 G 69 3.759 0 0.242 0.242 3.848 50.238 50.238 LGA P 70 P 70 7.204 0 0.067 0.231 9.449 19.048 12.721 LGA P 71 P 71 8.940 0 0.206 0.292 12.762 2.024 1.156 LGA D 72 D 72 11.531 3 0.638 0.617 11.622 0.119 0.060 LGA C 73 C 73 11.859 0 0.150 0.149 12.271 0.000 0.000 LGA R 74 R 74 13.481 0 0.216 1.397 19.687 0.000 0.000 LGA C 75 C 75 14.585 0 0.583 0.541 18.493 0.000 0.000 LGA D 76 D 76 17.463 0 0.231 0.928 18.063 0.000 0.000 LGA N 77 N 77 18.455 0 0.078 0.906 23.418 0.000 0.000 LGA L 78 L 78 19.404 0 0.223 1.297 23.330 0.000 0.000 LGA C 79 C 79 16.573 0 0.625 0.852 17.697 0.000 0.000 LGA K 80 K 80 17.388 0 0.031 1.028 21.863 0.000 0.000 LGA S 81 S 81 19.641 0 0.041 0.044 23.757 0.000 0.000 LGA Y 82 Y 82 13.120 0 0.215 1.292 15.410 0.000 0.317 LGA S 83 S 83 9.858 0 0.452 0.387 11.612 2.619 1.746 LGA S 84 S 84 9.336 0 0.185 0.590 12.859 4.762 3.175 LGA C 85 C 85 6.733 0 0.644 0.658 11.105 22.262 15.635 LGA C 86 C 86 1.470 0 0.117 0.226 5.263 61.905 52.857 LGA H 87 H 87 2.404 0 0.075 0.995 5.814 72.976 45.619 LGA D 88 D 88 4.071 0 0.036 1.206 9.027 42.857 25.536 LGA F 89 F 89 3.563 0 0.558 1.460 12.630 63.452 26.494 LGA D 90 D 90 1.214 0 0.042 0.806 2.629 71.071 66.964 LGA E 91 E 91 2.804 0 0.147 0.610 6.459 66.905 42.963 LGA L 92 L 92 1.106 0 0.188 1.074 2.640 79.286 74.286 LGA C 93 C 93 2.326 0 0.049 0.688 4.069 56.190 60.397 LGA L 94 L 94 3.987 0 0.341 0.360 6.859 35.000 38.631 LGA K 95 K 95 5.137 0 0.671 0.825 8.719 18.333 38.148 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 7.252 7.138 8.280 24.476 19.563 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 15 3.03 37.500 31.222 0.479 LGA_LOCAL RMSD: 3.031 Number of atoms: 15 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.186 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 7.252 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.248556 * X + 0.535665 * Y + 0.807021 * Z + 25.097494 Y_new = -0.654941 * X + -0.520897 * Y + 0.547465 * Z + 46.492279 Z_new = 0.713633 * X + -0.664627 * Y + 0.221357 * Z + 11.412348 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.208079 -0.794671 -1.249297 [DEG: -69.2178 -45.5313 -71.5794 ] ZXZ: 2.166863 1.347591 2.320653 [DEG: 124.1521 77.2113 132.9636 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS324_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS324_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 15 3.03 31.222 7.25 REMARK ---------------------------------------------------------- MOLECULE T0543TS324_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT N/A ATOM 422 N GLY 56 23.965 66.956 8.827 1.00 47.85 N ATOM 423 CA GLY 56 25.185 67.696 8.683 1.00 47.85 C ATOM 424 C GLY 56 25.005 69.079 9.241 1.00 47.85 C ATOM 425 O GLY 56 25.986 69.725 9.610 1.00 47.85 O ATOM 426 N SER 57 23.778 69.633 9.133 1.00122.41 N ATOM 427 CA SER 57 23.439 70.920 9.687 1.00122.41 C ATOM 428 CB SER 57 22.249 71.578 8.981 1.00122.41 C ATOM 429 OG SER 57 22.590 71.859 7.637 1.00122.41 O ATOM 430 C SER 57 23.031 70.823 11.124 1.00122.41 C ATOM 431 O SER 57 23.393 71.666 11.946 1.00122.41 O ATOM 432 N CYS 58 22.247 69.779 11.452 1.00100.54 N ATOM 433 CA CYS 58 21.655 69.656 12.753 1.00100.54 C ATOM 434 CB CYS 58 20.678 68.474 12.892 1.00100.54 C ATOM 435 SG CYS 58 21.480 66.846 12.869 1.00100.54 S ATOM 436 C CYS 58 22.733 69.495 13.768 1.00100.54 C ATOM 437 O CYS 58 22.582 69.896 14.920 1.00100.54 O ATOM 438 N LYS 59 23.860 68.890 13.364 1.00 91.29 N ATOM 439 CA LYS 59 24.913 68.678 14.304 1.00 91.29 C ATOM 440 CB LYS 59 26.135 67.962 13.698 1.00 91.29 C ATOM 441 CG LYS 59 26.859 68.747 12.606 1.00 91.29 C ATOM 442 CD LYS 59 28.231 68.163 12.263 1.00 91.29 C ATOM 443 CE LYS 59 28.972 68.930 11.169 1.00 91.29 C ATOM 444 NZ LYS 59 30.368 68.451 11.080 1.00 91.29 N ATOM 445 C LYS 59 25.340 70.010 14.835 1.00 91.29 C ATOM 446 O LYS 59 25.721 70.100 15.995 1.00 91.29 O ATOM 447 N GLY 60 25.410 71.042 13.968 1.00 75.08 N ATOM 448 CA GLY 60 25.700 72.403 14.342 1.00 75.08 C ATOM 449 C GLY 60 24.513 73.151 14.900 1.00 75.08 C ATOM 450 O GLY 60 24.667 74.038 15.738 1.00 75.08 O ATOM 451 N ARG 61 23.310 72.937 14.329 1.00106.94 N ATOM 452 CA ARG 61 22.173 73.707 14.760 1.00106.94 C ATOM 453 CB ARG 61 20.994 73.600 13.777 1.00106.94 C ATOM 454 CG ARG 61 21.208 74.356 12.464 1.00106.94 C ATOM 455 CD ARG 61 20.080 74.156 11.452 1.00106.94 C ATOM 456 NE ARG 61 20.264 75.158 10.366 1.00106.94 N ATOM 457 CZ ARG 61 19.546 76.320 10.391 1.00106.94 C ATOM 458 NH1 ARG 61 18.640 76.535 11.389 1.00106.94 N ATOM 459 NH2 ARG 61 19.727 77.262 9.420 1.00106.94 N ATOM 460 C ARG 61 21.651 73.307 16.109 1.00106.94 C ATOM 461 O ARG 61 21.501 74.131 17.007 1.00106.94 O ATOM 462 N CYS 62 21.246 72.030 16.216 1.00145.40 N ATOM 463 CA CYS 62 20.644 71.451 17.386 1.00145.40 C ATOM 464 CB CYS 62 19.692 70.318 16.973 1.00145.40 C ATOM 465 SG CYS 62 18.872 69.514 18.372 1.00145.40 S ATOM 466 C CYS 62 21.601 70.881 18.401 1.00145.40 C ATOM 467 O CYS 62 21.421 71.051 19.607 1.00145.40 O ATOM 468 N PHE 63 22.652 70.176 17.934 1.00 86.25 N ATOM 469 CA PHE 63 23.459 69.380 18.822 1.00 86.25 C ATOM 470 CB PHE 63 23.785 67.980 18.258 1.00 86.25 C ATOM 471 CG PHE 63 22.534 67.181 18.072 1.00 86.25 C ATOM 472 CD1 PHE 63 21.797 67.293 16.915 1.00 86.25 C ATOM 473 CD2 PHE 63 22.101 66.306 19.043 1.00 86.25 C ATOM 474 CE1 PHE 63 20.650 66.557 16.733 1.00 86.25 C ATOM 475 CE2 PHE 63 20.955 65.565 18.866 1.00 86.25 C ATOM 476 CZ PHE 63 20.225 65.690 17.709 1.00 86.25 C ATOM 477 C PHE 63 24.778 70.030 19.083 1.00 86.25 C ATOM 478 O PHE 63 25.231 70.891 18.333 1.00 86.25 O ATOM 479 N GLU 64 25.401 69.654 20.221 1.00 96.92 N ATOM 480 CA GLU 64 26.723 70.099 20.543 1.00 96.92 C ATOM 481 CB GLU 64 26.935 70.330 22.049 1.00 96.92 C ATOM 482 CG GLU 64 25.998 71.396 22.626 1.00 96.92 C ATOM 483 CD GLU 64 26.214 72.702 21.870 1.00 96.92 C ATOM 484 OE1 GLU 64 27.394 73.127 21.745 1.00 96.92 O ATOM 485 OE2 GLU 64 25.202 73.291 21.404 1.00 96.92 O ATOM 486 C GLU 64 27.659 69.018 20.082 1.00 96.92 C ATOM 487 O GLU 64 27.239 67.896 19.802 1.00 96.92 O ATOM 488 N LEU 65 28.964 69.332 19.998 1.00 52.57 N ATOM 489 CA LEU 65 29.960 68.410 19.528 1.00 52.57 C ATOM 490 CB LEU 65 31.367 69.028 19.473 1.00 52.57 C ATOM 491 CG LEU 65 32.454 68.059 18.971 1.00 52.57 C ATOM 492 CD1 LEU 65 32.184 67.604 17.529 1.00 52.57 C ATOM 493 CD2 LEU 65 33.858 68.658 19.153 1.00 52.57 C ATOM 494 C LEU 65 30.004 67.243 20.462 1.00 52.57 C ATOM 495 O LEU 65 30.315 66.124 20.061 1.00 52.57 O ATOM 496 N GLN 66 29.723 67.481 21.755 1.00 41.63 N ATOM 497 CA GLN 66 29.736 66.411 22.709 1.00 41.63 C ATOM 498 CB GLN 66 29.409 66.897 24.132 1.00 41.63 C ATOM 499 CG GLN 66 30.460 67.855 24.698 1.00 41.63 C ATOM 500 CD GLN 66 29.999 68.321 26.071 1.00 41.63 C ATOM 501 OE1 GLN 66 28.873 68.055 26.489 1.00 41.63 O ATOM 502 NE2 GLN 66 30.894 69.045 26.794 1.00 41.63 N ATOM 503 C GLN 66 28.683 65.425 22.308 1.00 41.63 C ATOM 504 O GLN 66 28.880 64.215 22.411 1.00 41.63 O ATOM 505 N GLU 67 27.518 65.930 21.861 1.00 63.80 N ATOM 506 CA GLU 67 26.413 65.118 21.437 1.00 63.80 C ATOM 507 CB GLU 67 25.113 65.927 21.311 1.00 63.80 C ATOM 508 CG GLU 67 24.604 66.387 22.680 1.00 63.80 C ATOM 509 CD GLU 67 23.415 67.312 22.483 1.00 63.80 C ATOM 510 OE1 GLU 67 23.576 68.337 21.767 1.00 63.80 O ATOM 511 OE2 GLU 67 22.333 67.009 23.050 1.00 63.80 O ATOM 512 C GLU 67 26.719 64.449 20.129 1.00 63.80 C ATOM 513 O GLU 67 26.185 63.381 19.833 1.00 63.80 O ATOM 514 N VAL 68 27.536 65.098 19.280 1.00 38.32 N ATOM 515 CA VAL 68 27.902 64.543 18.004 1.00 38.32 C ATOM 516 CB VAL 68 28.726 65.484 17.177 1.00 38.32 C ATOM 517 CG1 VAL 68 29.169 64.754 15.897 1.00 38.32 C ATOM 518 CG2 VAL 68 27.899 66.753 16.914 1.00 38.32 C ATOM 519 C VAL 68 28.719 63.301 18.208 1.00 38.32 C ATOM 520 O VAL 68 28.516 62.301 17.523 1.00 38.32 O ATOM 521 N GLY 69 29.675 63.336 19.160 1.00 32.19 N ATOM 522 CA GLY 69 30.531 62.199 19.381 1.00 32.19 C ATOM 523 C GLY 69 29.724 61.092 19.983 1.00 32.19 C ATOM 524 O GLY 69 28.870 61.313 20.839 1.00 32.19 O ATOM 525 N PRO 70 30.026 59.888 19.574 1.00 70.10 N ATOM 526 CA PRO 70 29.303 58.741 20.052 1.00 70.10 C ATOM 527 CD PRO 70 30.564 59.674 18.240 1.00 70.10 C ATOM 528 CB PRO 70 29.697 57.588 19.136 1.00 70.10 C ATOM 529 CG PRO 70 30.063 58.284 17.813 1.00 70.10 C ATOM 530 C PRO 70 29.608 58.479 21.490 1.00 70.10 C ATOM 531 O PRO 70 30.668 58.882 21.958 1.00 70.10 O ATOM 532 N PRO 71 28.711 57.840 22.185 1.00 67.21 N ATOM 533 CA PRO 71 28.864 57.516 23.578 1.00 67.21 C ATOM 534 CD PRO 71 27.580 57.167 21.569 1.00 67.21 C ATOM 535 CB PRO 71 27.555 56.830 23.969 1.00 67.21 C ATOM 536 CG PRO 71 27.068 56.201 22.650 1.00 67.21 C ATOM 537 C PRO 71 30.043 56.611 23.759 1.00 67.21 C ATOM 538 O PRO 71 30.524 56.479 24.883 1.00 67.21 O ATOM 539 N ASP 72 30.505 55.963 22.675 1.00 32.83 N ATOM 540 CA ASP 72 31.602 55.043 22.749 1.00 32.83 C ATOM 541 CB ASP 72 31.924 54.385 21.393 1.00 32.83 C ATOM 542 CG ASP 72 30.793 53.426 21.037 1.00 32.83 C ATOM 543 OD1 ASP 72 29.936 53.170 21.924 1.00 32.83 O ATOM 544 OD2 ASP 72 30.774 52.934 19.878 1.00 32.83 O ATOM 545 C ASP 72 32.822 55.789 23.189 1.00 32.83 C ATOM 546 O ASP 72 33.644 55.253 23.929 1.00 32.83 O ATOM 547 N CYS 73 32.963 57.056 22.754 1.00 92.49 N ATOM 548 CA CYS 73 34.142 57.814 23.062 1.00 92.49 C ATOM 549 CB CYS 73 34.225 59.168 22.333 1.00 92.49 C ATOM 550 SG CYS 73 32.950 60.354 22.853 1.00 92.49 S ATOM 551 C CYS 73 34.206 58.067 24.535 1.00 92.49 C ATOM 552 O CYS 73 33.193 58.061 25.233 1.00 92.49 O ATOM 553 N ARG 74 35.432 58.282 25.054 1.00159.58 N ATOM 554 CA ARG 74 35.582 58.476 26.464 1.00159.58 C ATOM 555 CB ARG 74 36.937 57.978 27.000 1.00159.58 C ATOM 556 CG ARG 74 38.150 58.638 26.346 1.00159.58 C ATOM 557 CD ARG 74 39.441 57.847 26.568 1.00159.58 C ATOM 558 NE ARG 74 39.227 56.503 25.959 1.00159.58 N ATOM 559 CZ ARG 74 40.281 55.670 25.718 1.00159.58 C ATOM 560 NH1 ARG 74 41.549 56.060 26.038 1.00159.58 N ATOM 561 NH2 ARG 74 40.065 54.447 25.151 1.00159.58 N ATOM 562 C ARG 74 35.429 59.929 26.762 1.00159.58 C ATOM 563 O ARG 74 36.324 60.742 26.527 1.00159.58 O ATOM 564 N CYS 75 34.246 60.280 27.298 1.00 40.54 N ATOM 565 CA CYS 75 33.948 61.635 27.633 1.00 40.54 C ATOM 566 CB CYS 75 32.443 61.883 27.821 1.00 40.54 C ATOM 567 SG CYS 75 31.498 61.545 26.305 1.00 40.54 S ATOM 568 C CYS 75 34.634 61.941 28.923 1.00 40.54 C ATOM 569 O CYS 75 34.746 61.080 29.794 1.00 40.54 O ATOM 570 N ASP 76 35.141 63.183 29.060 1.00 58.27 N ATOM 571 CA ASP 76 35.798 63.574 30.274 1.00 58.27 C ATOM 572 CB ASP 76 37.330 63.467 30.186 1.00 58.27 C ATOM 573 CG ASP 76 37.913 63.626 31.583 1.00 58.27 C ATOM 574 OD1 ASP 76 37.146 63.476 32.570 1.00 58.27 O ATOM 575 OD2 ASP 76 39.140 63.902 31.679 1.00 58.27 O ATOM 576 C ASP 76 35.467 65.017 30.510 1.00 58.27 C ATOM 577 O ASP 76 35.939 65.895 29.791 1.00 58.27 O ATOM 578 N ASN 77 34.648 65.304 31.539 1.00 92.87 N ATOM 579 CA ASN 77 34.260 66.657 31.828 1.00 92.87 C ATOM 580 CB ASN 77 33.192 66.763 32.929 1.00 92.87 C ATOM 581 CG ASN 77 33.732 66.069 34.164 1.00 92.87 C ATOM 582 OD1 ASN 77 34.072 64.889 34.092 1.00 92.87 O ATOM 583 ND2 ASN 77 33.817 66.800 35.307 1.00 92.87 N ATOM 584 C ASN 77 35.469 67.437 32.241 1.00 92.87 C ATOM 585 O ASN 77 35.560 68.639 31.994 1.00 92.87 O ATOM 586 N LEU 78 36.429 66.772 32.902 1.00 45.48 N ATOM 587 CA LEU 78 37.611 67.431 33.374 1.00 45.48 C ATOM 588 CB LEU 78 38.514 66.503 34.203 1.00 45.48 C ATOM 589 CG LEU 78 37.851 66.018 35.505 1.00 45.48 C ATOM 590 CD1 LEU 78 38.790 65.104 36.309 1.00 45.48 C ATOM 591 CD2 LEU 78 37.312 67.198 36.327 1.00 45.48 C ATOM 592 C LEU 78 38.417 67.933 32.214 1.00 45.48 C ATOM 593 O LEU 78 39.025 68.998 32.304 1.00 45.48 O ATOM 594 N CYS 79 38.446 67.174 31.099 1.00 41.34 N ATOM 595 CA CYS 79 39.274 67.499 29.968 1.00 41.34 C ATOM 596 CB CYS 79 39.365 66.342 28.958 1.00 41.34 C ATOM 597 SG CYS 79 40.409 66.729 27.523 1.00 41.34 S ATOM 598 C CYS 79 38.753 68.710 29.250 1.00 41.34 C ATOM 599 O CYS 79 37.565 68.822 28.949 1.00 41.34 O ATOM 600 N LYS 80 39.666 69.663 28.964 1.00 34.40 N ATOM 601 CA LYS 80 39.352 70.888 28.280 1.00 34.40 C ATOM 602 CB LYS 80 40.525 71.882 28.230 1.00 34.40 C ATOM 603 CG LYS 80 40.865 72.511 29.582 1.00 34.40 C ATOM 604 CD LYS 80 42.158 73.329 29.565 1.00 34.40 C ATOM 605 CE LYS 80 42.455 74.037 30.888 1.00 34.40 C ATOM 606 NZ LYS 80 43.708 74.817 30.774 1.00 34.40 N ATOM 607 C LYS 80 38.969 70.598 26.864 1.00 34.40 C ATOM 608 O LYS 80 38.063 71.228 26.320 1.00 34.40 O ATOM 609 N SER 81 39.657 69.634 26.225 1.00 29.32 N ATOM 610 CA SER 81 39.398 69.343 24.844 1.00 29.32 C ATOM 611 CB SER 81 40.300 68.230 24.288 1.00 29.32 C ATOM 612 OG SER 81 41.659 68.644 24.327 1.00 29.32 O ATOM 613 C SER 81 37.981 68.884 24.721 1.00 29.32 C ATOM 614 O SER 81 37.298 69.194 23.746 1.00 29.32 O ATOM 615 N TYR 82 37.512 68.119 25.717 1.00 67.56 N ATOM 616 CA TYR 82 36.171 67.612 25.755 1.00 67.56 C ATOM 617 CB TYR 82 35.988 66.690 26.976 1.00 67.56 C ATOM 618 CG TYR 82 34.567 66.277 27.154 1.00 67.56 C ATOM 619 CD1 TYR 82 34.008 65.297 26.367 1.00 67.56 C ATOM 620 CD2 TYR 82 33.801 66.856 28.142 1.00 67.56 C ATOM 621 CE1 TYR 82 32.699 64.915 26.553 1.00 67.56 C ATOM 622 CE2 TYR 82 32.494 66.478 28.333 1.00 67.56 C ATOM 623 CZ TYR 82 31.942 65.506 27.536 1.00 67.56 C ATOM 624 OH TYR 82 30.601 65.112 27.729 1.00 67.56 O ATOM 625 C TYR 82 35.216 68.762 25.876 1.00 67.56 C ATOM 626 O TYR 82 34.219 68.838 25.159 1.00 67.56 O ATOM 627 N SER 83 35.527 69.706 26.780 1.00 82.40 N ATOM 628 CA SER 83 34.674 70.820 27.085 1.00 82.40 C ATOM 629 CB SER 83 35.225 71.673 28.237 1.00 82.40 C ATOM 630 OG SER 83 35.384 70.872 29.397 1.00 82.40 O ATOM 631 C SER 83 34.579 71.721 25.898 1.00 82.40 C ATOM 632 O SER 83 33.591 72.431 25.721 1.00 82.40 O ATOM 633 N SER 84 35.614 71.697 25.046 1.00 84.50 N ATOM 634 CA SER 84 35.715 72.556 23.905 1.00 84.50 C ATOM 635 CB SER 84 37.015 72.300 23.132 1.00 84.50 C ATOM 636 OG SER 84 37.035 73.086 21.955 1.00 84.50 O ATOM 637 C SER 84 34.584 72.268 22.972 1.00 84.50 C ATOM 638 O SER 84 34.211 73.109 22.156 1.00 84.50 O ATOM 639 N CYS 85 34.004 71.063 23.088 1.00 50.09 N ATOM 640 CA CYS 85 32.955 70.598 22.231 1.00 50.09 C ATOM 641 CB CYS 85 32.538 69.154 22.557 1.00 50.09 C ATOM 642 SG CYS 85 33.892 67.967 22.304 1.00 50.09 S ATOM 643 C CYS 85 31.744 71.462 22.391 1.00 50.09 C ATOM 644 O CYS 85 30.969 71.618 21.447 1.00 50.09 O ATOM 645 N CYS 86 31.523 72.005 23.606 1.00 98.68 N ATOM 646 CA CYS 86 30.382 72.847 23.834 1.00 98.68 C ATOM 647 CB CYS 86 29.936 72.941 25.302 1.00 98.68 C ATOM 648 SG CYS 86 28.895 71.561 25.841 1.00 98.68 S ATOM 649 C CYS 86 30.697 74.254 23.429 1.00 98.68 C ATOM 650 O CYS 86 31.671 74.850 23.884 1.00 98.68 O ATOM 651 N HIS 87 29.858 74.809 22.535 1.00 56.13 N ATOM 652 CA HIS 87 29.975 76.161 22.064 1.00 56.13 C ATOM 653 ND1 HIS 87 29.061 74.438 19.375 1.00 56.13 N ATOM 654 CG HIS 87 29.359 75.759 19.626 1.00 56.13 C ATOM 655 CB HIS 87 29.019 76.473 20.899 1.00 56.13 C ATOM 656 NE2 HIS 87 30.087 75.215 17.560 1.00 56.13 N ATOM 657 CD2 HIS 87 29.985 76.218 18.508 1.00 56.13 C ATOM 658 CE1 HIS 87 29.518 74.165 18.126 1.00 56.13 C ATOM 659 C HIS 87 29.623 77.113 23.166 1.00 56.13 C ATOM 660 O HIS 87 30.280 78.136 23.350 1.00 56.13 O ATOM 661 N ASP 88 28.573 76.783 23.941 1.00 68.94 N ATOM 662 CA ASP 88 28.086 77.643 24.980 1.00 68.94 C ATOM 663 CB ASP 88 29.195 78.059 25.962 1.00 68.94 C ATOM 664 CG ASP 88 29.642 76.818 26.723 1.00 68.94 C ATOM 665 OD1 ASP 88 28.755 76.053 27.190 1.00 68.94 O ATOM 666 OD2 ASP 88 30.879 76.611 26.835 1.00 68.94 O ATOM 667 C ASP 88 27.502 78.889 24.371 1.00 68.94 C ATOM 668 O ASP 88 27.419 79.922 25.033 1.00 68.94 O ATOM 669 N PHE 89 27.073 78.826 23.090 1.00 63.97 N ATOM 670 CA PHE 89 26.415 79.954 22.480 1.00 63.97 C ATOM 671 CB PHE 89 27.132 80.491 21.229 1.00 63.97 C ATOM 672 CG PHE 89 28.449 81.037 21.650 1.00 63.97 C ATOM 673 CD1 PHE 89 29.553 80.219 21.715 1.00 63.97 C ATOM 674 CD2 PHE 89 28.582 82.366 21.982 1.00 63.97 C ATOM 675 CE1 PHE 89 30.773 80.720 22.104 1.00 63.97 C ATOM 676 CE2 PHE 89 29.799 82.873 22.371 1.00 63.97 C ATOM 677 CZ PHE 89 30.897 82.049 22.431 1.00 63.97 C ATOM 678 C PHE 89 25.073 79.478 22.009 1.00 63.97 C ATOM 679 O PHE 89 24.966 78.820 20.974 1.00 63.97 O ATOM 680 N ASP 90 24.002 79.837 22.742 1.00 39.20 N ATOM 681 CA ASP 90 22.685 79.370 22.410 1.00 39.20 C ATOM 682 CB ASP 90 21.637 79.802 23.450 1.00 39.20 C ATOM 683 CG ASP 90 21.921 79.041 24.737 1.00 39.20 C ATOM 684 OD1 ASP 90 22.578 77.968 24.652 1.00 39.20 O ATOM 685 OD2 ASP 90 21.488 79.518 25.820 1.00 39.20 O ATOM 686 C ASP 90 22.262 79.916 21.082 1.00 39.20 C ATOM 687 O ASP 90 21.760 79.184 20.229 1.00 39.20 O ATOM 688 N GLU 91 22.467 81.227 20.868 1.00 47.18 N ATOM 689 CA GLU 91 22.035 81.864 19.658 1.00 47.18 C ATOM 690 CB GLU 91 22.171 83.398 19.703 1.00 47.18 C ATOM 691 CG GLU 91 21.188 84.046 20.685 1.00 47.18 C ATOM 692 CD GLU 91 21.387 85.555 20.667 1.00 47.18 C ATOM 693 OE1 GLU 91 22.467 86.020 21.122 1.00 47.18 O ATOM 694 OE2 GLU 91 20.455 86.265 20.202 1.00 47.18 O ATOM 695 C GLU 91 22.824 81.347 18.501 1.00 47.18 C ATOM 696 O GLU 91 22.279 81.143 17.419 1.00 47.18 O ATOM 697 N LEU 92 24.125 81.084 18.701 1.00100.25 N ATOM 698 CA LEU 92 24.958 80.684 17.606 1.00100.25 C ATOM 699 CB LEU 92 26.403 80.423 18.090 1.00100.25 C ATOM 700 CG LEU 92 27.465 80.086 17.019 1.00100.25 C ATOM 701 CD1 LEU 92 28.852 79.981 17.671 1.00100.25 C ATOM 702 CD2 LEU 92 27.144 78.810 16.226 1.00100.25 C ATOM 703 C LEU 92 24.386 79.434 17.009 1.00100.25 C ATOM 704 O LEU 92 24.225 79.341 15.793 1.00100.25 O ATOM 705 N CYS 93 24.038 78.442 17.846 1.00 90.27 N ATOM 706 CA CYS 93 23.526 77.219 17.297 1.00 90.27 C ATOM 707 CB CYS 93 23.441 76.063 18.315 1.00 90.27 C ATOM 708 SG CYS 93 22.529 76.452 19.836 1.00 90.27 S ATOM 709 C CYS 93 22.196 77.443 16.640 1.00 90.27 C ATOM 710 O CYS 93 21.933 76.904 15.566 1.00 90.27 O ATOM 711 N LEU 94 21.327 78.267 17.253 1.00 61.53 N ATOM 712 CA LEU 94 20.012 78.522 16.729 1.00 61.53 C ATOM 713 CB LEU 94 19.168 79.417 17.654 1.00 61.53 C ATOM 714 CG LEU 94 18.915 78.806 19.047 1.00 61.53 C ATOM 715 CD1 LEU 94 18.062 79.741 19.921 1.00 61.53 C ATOM 716 CD2 LEU 94 18.337 77.386 18.941 1.00 61.53 C ATOM 717 C LEU 94 20.137 79.232 15.414 1.00 61.53 C ATOM 718 O LEU 94 19.267 79.125 14.548 1.00 61.53 O ATOM 719 N LYS 95 21.174 80.079 15.302 1.00161.46 N ATOM 720 CA LYS 95 21.497 80.873 14.147 1.00161.46 C ATOM 721 CB LYS 95 22.405 82.071 14.484 1.00161.46 C ATOM 722 CG LYS 95 21.793 83.039 15.503 1.00161.46 C ATOM 723 CD LYS 95 20.471 83.679 15.075 1.00161.46 C ATOM 724 CE LYS 95 19.782 84.446 16.208 1.00161.46 C ATOM 725 NZ LYS 95 20.598 85.614 16.610 1.00161.46 N ATOM 726 C LYS 95 22.180 80.077 13.070 1.00161.46 C ATOM 727 O LYS 95 22.129 80.472 11.908 1.00161.46 O TER 7142 ILE 887 END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 79.78 44.9 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 79.41 46.4 56 100.0 56 ARMSMC BURIED . . . . . . . . 80.70 40.9 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 88.28 44.4 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 89.50 42.9 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 79.33 52.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 105.85 27.3 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 72.56 47.8 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 54.20 52.9 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 75.52 50.0 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 60.72 40.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 58.00 44.4 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 57.02 50.0 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 64.66 28.6 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 22.41 100.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 72.49 60.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 72.49 60.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 80.85 50.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 11.14 100.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.25 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.25 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.1813 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 6.87 29 100.0 29 CRMSCA BURIED . . . . . . . . 8.18 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.39 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 7.07 142 100.0 142 CRMSMC BURIED . . . . . . . . 8.14 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 9.45 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 9.35 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 9.42 103 100.0 103 CRMSSC BURIED . . . . . . . . 9.52 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.31 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 8.15 219 100.0 219 CRMSALL BURIED . . . . . . . . 8.72 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 66.614 0.801 0.823 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 65.296 0.806 0.828 29 100.0 29 ERRCA BURIED . . . . . . . . 70.089 0.788 0.812 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 66.858 0.801 0.823 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 65.551 0.804 0.825 142 100.0 142 ERRMC BURIED . . . . . . . . 70.233 0.792 0.816 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 68.506 0.762 0.793 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 70.993 0.768 0.798 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 65.503 0.755 0.788 103 100.0 103 ERRSC BURIED . . . . . . . . 76.237 0.779 0.804 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 67.580 0.785 0.811 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 65.423 0.784 0.810 219 100.0 219 ERRALL BURIED . . . . . . . . 73.204 0.788 0.812 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 2 9 36 40 40 DISTCA CA (P) 0.00 2.50 5.00 22.50 90.00 40 DISTCA CA (RMS) 0.00 1.03 1.79 3.65 6.69 DISTCA ALL (N) 1 4 13 62 229 303 303 DISTALL ALL (P) 0.33 1.32 4.29 20.46 75.58 303 DISTALL ALL (RMS) 0.93 1.34 2.30 3.87 6.76 DISTALL END of the results output