####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS307_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS307_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 74 - 95 4.93 13.94 LCS_AVERAGE: 52.06 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 64 - 70 1.60 16.33 LCS_AVERAGE: 13.50 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 71 - 76 0.83 16.59 LCS_AVERAGE: 9.69 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 3 4 17 2 3 3 3 4 5 5 8 10 12 14 15 16 16 17 17 18 19 21 21 LCS_GDT S 57 S 57 3 4 17 3 3 4 4 4 5 7 8 10 11 14 15 16 16 17 17 19 20 24 25 LCS_GDT C 58 C 58 3 4 17 3 3 4 4 4 5 7 7 8 11 12 15 16 16 17 17 18 21 24 26 LCS_GDT K 59 K 59 4 5 17 3 4 4 5 5 6 7 9 11 12 14 15 17 20 20 23 24 28 30 32 LCS_GDT G 60 G 60 4 5 17 3 4 5 5 7 10 10 10 11 12 14 15 17 20 20 23 24 28 30 32 LCS_GDT R 61 R 61 4 5 17 3 4 5 5 7 10 10 10 11 12 14 15 17 20 21 23 25 30 31 32 LCS_GDT C 62 C 62 4 5 17 3 4 5 5 5 6 7 8 10 12 14 15 17 21 22 24 27 30 31 32 LCS_GDT F 63 F 63 3 5 20 3 3 5 5 6 10 10 10 11 12 14 15 17 21 23 24 27 30 31 32 LCS_GDT E 64 E 64 3 7 21 3 3 6 6 8 10 11 13 15 17 18 19 20 22 23 24 27 30 31 32 LCS_GDT L 65 L 65 3 7 21 3 3 6 6 7 10 10 13 15 17 18 19 20 22 23 24 27 30 31 32 LCS_GDT Q 66 Q 66 4 7 21 4 4 4 6 7 10 11 12 14 16 18 19 20 22 23 24 27 30 31 32 LCS_GDT E 67 E 67 4 7 21 4 4 6 6 7 10 11 13 15 17 18 19 20 22 23 24 27 30 31 32 LCS_GDT V 68 V 68 4 7 21 4 4 6 7 9 10 11 13 15 17 18 19 20 22 23 24 27 30 31 32 LCS_GDT G 69 G 69 4 7 21 4 4 6 7 9 10 11 13 15 17 18 19 20 22 23 24 27 30 31 32 LCS_GDT P 70 P 70 4 7 21 3 3 6 6 9 10 11 13 15 17 18 19 20 22 23 24 27 30 31 32 LCS_GDT P 71 P 71 6 6 21 3 5 6 6 7 8 10 11 14 17 18 19 20 22 23 24 27 30 31 32 LCS_GDT D 72 D 72 6 6 21 4 5 6 7 9 10 11 13 15 17 18 19 20 22 23 24 27 30 31 32 LCS_GDT C 73 C 73 6 6 21 4 5 6 6 7 9 11 13 15 17 18 19 20 22 23 24 27 30 31 32 LCS_GDT R 74 R 74 6 6 22 4 5 6 6 7 8 11 12 14 16 17 18 19 21 23 24 27 30 31 32 LCS_GDT C 75 C 75 6 6 22 4 5 6 6 7 8 11 12 14 16 17 18 18 20 20 23 25 29 29 31 LCS_GDT D 76 D 76 6 6 22 3 4 6 6 7 8 10 12 14 16 18 18 19 20 20 22 23 24 27 29 LCS_GDT N 77 N 77 3 6 22 3 3 4 6 6 8 11 12 14 16 18 18 19 20 20 22 23 24 26 29 LCS_GDT L 78 L 78 3 6 22 3 3 3 5 7 8 11 12 14 16 18 18 19 20 20 21 22 22 24 25 LCS_GDT C 79 C 79 3 6 22 3 3 4 5 7 8 11 12 14 16 18 18 19 20 20 23 26 29 31 32 LCS_GDT K 80 K 80 3 4 22 3 3 4 4 7 8 10 11 14 16 18 18 19 21 22 24 27 30 31 32 LCS_GDT S 81 S 81 3 5 22 3 3 4 4 7 8 10 11 14 16 18 18 19 21 22 24 26 30 31 32 LCS_GDT Y 82 Y 82 4 5 22 4 4 4 5 7 9 11 13 15 17 18 19 20 22 23 24 27 30 31 32 LCS_GDT S 83 S 83 4 5 22 4 4 5 7 9 10 11 13 15 17 18 19 20 22 23 24 27 30 31 32 LCS_GDT S 84 S 84 4 5 22 4 4 5 7 7 8 10 11 14 16 18 19 20 22 23 24 27 30 31 32 LCS_GDT C 85 C 85 4 5 22 4 4 4 4 6 7 9 11 14 16 18 18 19 22 23 24 27 30 31 32 LCS_GDT C 86 C 86 3 5 22 3 3 5 7 7 8 10 11 14 16 18 18 20 22 23 24 27 30 31 32 LCS_GDT H 87 H 87 3 5 22 3 3 3 6 8 10 11 13 15 17 18 19 20 22 23 24 27 30 31 32 LCS_GDT D 88 D 88 3 5 22 3 3 3 5 5 6 7 8 11 13 15 17 19 22 23 24 27 30 31 32 LCS_GDT F 89 F 89 3 5 22 3 3 4 7 9 10 11 13 15 17 18 19 20 22 23 24 27 30 31 32 LCS_GDT D 90 D 90 4 5 22 3 4 4 7 9 10 11 13 15 17 18 19 20 22 23 24 27 30 31 32 LCS_GDT E 91 E 91 4 5 22 3 4 4 7 9 10 11 13 15 17 18 19 20 22 23 24 27 30 31 32 LCS_GDT L 92 L 92 4 5 22 3 4 5 7 9 10 11 13 15 17 18 19 20 22 23 24 27 30 31 32 LCS_GDT C 93 C 93 4 5 22 3 4 5 7 7 8 11 13 15 17 18 19 20 22 23 24 27 30 31 32 LCS_GDT L 94 L 94 3 4 22 3 3 5 5 7 8 10 11 14 16 18 18 19 20 20 24 27 30 31 32 LCS_GDT K 95 K 95 3 3 22 3 3 3 5 7 8 10 11 14 16 18 18 19 20 20 21 25 30 31 32 LCS_AVERAGE LCS_A: 25.08 ( 9.69 13.50 52.06 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 6 7 9 10 11 13 15 17 18 19 20 22 23 24 27 30 31 32 GDT PERCENT_AT 10.00 12.50 15.00 17.50 22.50 25.00 27.50 32.50 37.50 42.50 45.00 47.50 50.00 55.00 57.50 60.00 67.50 75.00 77.50 80.00 GDT RMS_LOCAL 0.32 0.68 0.83 1.39 1.91 2.08 2.40 2.72 3.06 3.38 3.58 3.79 4.00 4.37 4.57 4.83 5.50 6.19 6.38 6.85 GDT RMS_ALL_AT 16.44 16.41 16.59 13.02 9.92 10.04 10.19 10.13 10.26 10.14 10.23 10.21 10.30 10.37 10.37 10.28 10.07 9.75 9.72 9.43 # Checking swapping # possible swapping detected: F 63 F 63 # possible swapping detected: E 67 E 67 # possible swapping detected: D 76 D 76 # possible swapping detected: D 88 D 88 # possible swapping detected: D 90 D 90 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 21.477 0 0.321 0.321 22.637 0.000 0.000 LGA S 57 S 57 20.677 0 0.173 0.638 22.320 0.000 0.000 LGA C 58 C 58 16.641 0 0.025 0.073 18.367 0.000 0.000 LGA K 59 K 59 15.218 0 0.497 0.740 17.867 0.000 0.000 LGA G 60 G 60 16.137 0 0.077 0.077 16.137 0.000 0.000 LGA R 61 R 61 11.455 0 0.064 1.393 17.445 0.833 0.303 LGA C 62 C 62 8.519 0 0.355 0.579 11.881 6.667 4.444 LGA F 63 F 63 7.797 0 0.601 1.239 16.405 13.214 4.848 LGA E 64 E 64 3.118 0 0.666 0.611 9.395 36.548 23.122 LGA L 65 L 65 5.340 0 0.613 0.664 6.679 29.762 25.179 LGA Q 66 Q 66 7.274 0 0.249 1.068 11.098 14.405 8.730 LGA E 67 E 67 4.979 0 0.261 0.797 8.970 32.262 19.841 LGA V 68 V 68 1.557 0 0.079 0.253 2.540 66.905 75.850 LGA G 69 G 69 3.079 0 0.382 0.382 4.554 50.833 50.833 LGA P 70 P 70 2.950 0 0.255 0.427 6.481 42.619 48.912 LGA P 71 P 71 5.418 0 0.181 0.297 6.755 28.929 23.333 LGA D 72 D 72 2.158 3 0.699 0.684 5.046 51.310 32.798 LGA C 73 C 73 4.044 0 0.228 0.839 5.982 36.190 34.603 LGA R 74 R 74 8.243 0 0.100 0.801 18.011 5.000 1.948 LGA C 75 C 75 12.627 0 0.401 0.875 15.129 0.000 0.000 LGA D 76 D 76 16.234 0 0.714 1.351 19.863 0.000 0.000 LGA N 77 N 77 16.150 0 0.238 0.758 16.446 0.000 0.000 LGA L 78 L 78 18.086 0 0.224 1.335 24.123 0.000 0.000 LGA C 79 C 79 12.603 0 0.097 0.721 14.463 0.000 0.000 LGA K 80 K 80 9.687 0 0.346 0.980 10.861 0.833 1.587 LGA S 81 S 81 12.004 0 0.599 0.523 16.336 0.476 0.317 LGA Y 82 Y 82 5.905 0 0.309 1.268 8.153 28.333 25.317 LGA S 83 S 83 3.199 0 0.574 0.755 4.403 41.905 44.683 LGA S 84 S 84 7.559 0 0.667 0.839 10.269 7.262 5.635 LGA C 85 C 85 8.674 0 0.645 0.693 10.693 7.619 5.159 LGA C 86 C 86 8.001 0 0.089 0.865 10.584 13.810 9.286 LGA H 87 H 87 2.530 0 0.393 1.201 7.877 39.762 30.286 LGA D 88 D 88 6.929 0 0.497 1.129 12.307 21.786 10.952 LGA F 89 F 89 2.120 0 0.097 1.100 5.913 63.571 51.818 LGA D 90 D 90 1.270 0 0.357 0.747 3.429 79.881 65.833 LGA E 91 E 91 2.850 0 0.096 0.605 6.870 61.190 40.688 LGA L 92 L 92 1.138 0 0.560 0.539 4.884 65.119 68.333 LGA C 93 C 93 3.545 0 0.689 1.114 4.820 44.167 49.762 LGA L 94 L 94 8.755 0 0.228 0.342 13.895 4.167 2.083 LGA K 95 K 95 10.908 0 0.188 1.262 13.106 1.071 0.476 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 9.267 9.070 9.917 22.411 19.174 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 13 2.72 30.625 27.300 0.461 LGA_LOCAL RMSD: 2.718 Number of atoms: 13 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.130 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 9.267 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.936234 * X + 0.082923 * Y + -0.341452 * Z + -37.060467 Y_new = -0.217555 * X + -0.626295 * Y + -0.748615 * Z + 54.991467 Z_new = -0.275927 * X + 0.775163 * Y + -0.568319 * Z + 6.352743 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.228320 0.279554 2.203433 [DEG: -13.0818 16.0173 126.2474 ] ZXZ: -0.427925 2.175257 -0.341975 [DEG: -24.5183 124.6331 -19.5937 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS307_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS307_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 13 2.72 27.300 9.27 REMARK ---------------------------------------------------------- MOLECULE T0543TS307_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT 2gsn_A ATOM 422 N GLY 56 16.511 64.196 21.141 1.00 0.00 N ATOM 423 CA GLY 56 15.227 63.574 21.072 1.00 0.00 C ATOM 424 C GLY 56 14.069 64.499 20.553 1.00 0.00 C ATOM 425 O GLY 56 13.239 63.964 19.817 1.00 0.00 O ATOM 426 N SER 57 13.946 65.776 20.974 1.00 0.00 N ATOM 427 CA SER 57 12.943 66.681 20.435 1.00 0.00 C ATOM 428 C SER 57 13.368 67.382 19.096 1.00 0.00 C ATOM 429 O SER 57 14.133 68.355 19.080 1.00 0.00 O ATOM 430 CB SER 57 12.553 67.715 21.451 1.00 0.00 C ATOM 431 OG SER 57 12.187 67.322 22.721 1.00 0.00 O ATOM 432 N CYS 58 12.735 66.890 18.006 1.00 0.00 N ATOM 433 CA CYS 58 12.948 67.277 16.595 1.00 0.00 C ATOM 434 C CYS 58 14.402 67.044 16.062 1.00 0.00 C ATOM 435 O CYS 58 14.658 67.460 14.930 1.00 0.00 O ATOM 436 CB CYS 58 12.620 68.728 16.304 1.00 0.00 C ATOM 437 SG CYS 58 10.897 69.028 16.547 1.00 0.00 S ATOM 438 N LYS 59 15.409 66.795 16.885 1.00 0.00 N ATOM 439 CA LYS 59 16.757 66.506 16.386 1.00 0.00 C ATOM 440 C LYS 59 16.763 65.041 15.945 1.00 0.00 C ATOM 441 O LYS 59 16.732 64.672 14.731 1.00 0.00 O ATOM 442 CB LYS 59 17.812 66.670 17.494 1.00 0.00 C ATOM 443 CG LYS 59 17.855 68.192 17.870 1.00 0.00 C ATOM 444 CD LYS 59 18.948 68.524 18.932 1.00 0.00 C ATOM 445 CE LYS 59 20.329 68.359 18.313 1.00 0.00 C ATOM 446 NZ LYS 59 21.348 68.801 19.261 1.00 0.00 N ATOM 447 N GLY 60 16.485 64.242 16.999 1.00 0.00 N ATOM 448 CA GLY 60 16.341 62.819 17.033 1.00 0.00 C ATOM 449 C GLY 60 17.676 61.978 16.904 1.00 0.00 C ATOM 450 O GLY 60 17.549 60.768 17.027 1.00 0.00 O ATOM 451 N ARG 61 18.888 62.502 16.555 1.00 0.00 N ATOM 452 CA ARG 61 20.010 61.632 16.398 1.00 0.00 C ATOM 453 C ARG 61 21.279 62.410 16.640 1.00 0.00 C ATOM 454 O ARG 61 22.330 61.852 16.423 1.00 0.00 O ATOM 455 CB ARG 61 19.919 61.102 14.994 1.00 0.00 C ATOM 456 CG ARG 61 21.032 60.070 14.745 1.00 0.00 C ATOM 457 CD ARG 61 20.330 58.906 15.312 1.00 0.00 C ATOM 458 NE ARG 61 21.064 57.652 15.381 1.00 0.00 N ATOM 459 CZ ARG 61 20.463 56.629 16.058 1.00 0.00 C ATOM 460 NH1 ARG 61 19.234 56.714 16.641 1.00 0.00 H ATOM 461 NH2 ARG 61 21.133 55.490 16.239 1.00 0.00 H ATOM 462 N CYS 62 21.262 63.624 17.251 1.00 0.00 N ATOM 463 CA CYS 62 22.448 64.437 17.365 1.00 0.00 C ATOM 464 C CYS 62 23.109 64.518 16.028 1.00 0.00 C ATOM 465 O CYS 62 22.366 64.844 15.072 1.00 0.00 O ATOM 466 CB CYS 62 23.294 64.350 18.612 1.00 0.00 C ATOM 467 SG CYS 62 22.344 64.444 20.093 1.00 0.00 S ATOM 468 N PHE 63 24.433 64.236 15.876 1.00 0.00 N ATOM 469 CA PHE 63 24.965 64.238 14.520 1.00 0.00 C ATOM 470 C PHE 63 24.646 65.588 13.881 1.00 0.00 C ATOM 471 O PHE 63 25.430 66.524 14.174 1.00 0.00 O ATOM 472 CB PHE 63 24.469 62.985 13.742 1.00 0.00 C ATOM 473 CG PHE 63 24.936 63.065 12.288 1.00 0.00 C ATOM 474 CD1 PHE 63 24.123 63.587 11.250 1.00 0.00 C ATOM 475 CD2 PHE 63 26.218 62.624 11.992 1.00 0.00 C ATOM 476 CE1 PHE 63 24.625 63.639 9.958 1.00 0.00 C ATOM 477 CE2 PHE 63 26.706 62.627 10.683 1.00 0.00 C ATOM 478 CZ PHE 63 25.881 63.186 9.661 1.00 0.00 C ATOM 479 N GLU 64 23.788 65.667 12.865 1.00 0.00 N ATOM 480 CA GLU 64 23.427 66.915 12.135 1.00 0.00 C ATOM 481 C GLU 64 23.290 68.154 13.056 1.00 0.00 C ATOM 482 O GLU 64 23.625 69.233 12.586 1.00 0.00 O ATOM 483 CB GLU 64 22.150 66.641 11.421 1.00 0.00 C ATOM 484 CG GLU 64 20.955 67.393 11.011 1.00 0.00 C ATOM 485 CD GLU 64 19.703 66.512 11.005 1.00 0.00 C ATOM 486 OE1 GLU 64 19.272 65.964 10.019 1.00 0.00 O ATOM 487 OE2 GLU 64 19.205 66.420 12.223 1.00 0.00 O ATOM 488 N LEU 65 22.810 67.971 14.260 1.00 0.00 N ATOM 489 CA LEU 65 22.564 68.995 15.238 1.00 0.00 C ATOM 490 C LEU 65 23.539 68.674 16.315 1.00 0.00 C ATOM 491 O LEU 65 23.292 67.769 17.136 1.00 0.00 O ATOM 492 CB LEU 65 21.167 68.764 15.547 1.00 0.00 C ATOM 493 CG LEU 65 20.020 68.729 14.685 1.00 0.00 C ATOM 494 CD1 LEU 65 18.681 68.443 15.336 1.00 0.00 C ATOM 495 CD2 LEU 65 19.907 70.021 13.897 1.00 0.00 C ATOM 496 N GLN 66 24.407 69.625 16.526 1.00 0.00 N ATOM 497 CA GLN 66 25.501 69.361 17.362 1.00 0.00 C ATOM 498 C GLN 66 25.157 69.146 18.817 1.00 0.00 C ATOM 499 O GLN 66 25.086 70.083 19.608 1.00 0.00 O ATOM 500 CB GLN 66 26.629 70.420 17.256 1.00 0.00 C ATOM 501 CG GLN 66 27.894 70.106 18.110 1.00 0.00 C ATOM 502 CD GLN 66 28.738 71.376 18.227 1.00 0.00 C ATOM 503 OE1 GLN 66 28.200 72.349 18.687 1.00 0.00 O ATOM 504 NE2 GLN 66 29.924 71.433 17.599 1.00 0.00 N ATOM 505 N GLU 67 25.483 67.901 19.108 1.00 0.00 N ATOM 506 CA GLU 67 25.396 67.317 20.399 1.00 0.00 C ATOM 507 C GLU 67 26.074 65.901 20.383 1.00 0.00 C ATOM 508 O GLU 67 25.389 64.931 20.642 1.00 0.00 O ATOM 509 CB GLU 67 23.997 67.320 20.991 1.00 0.00 C ATOM 510 CG GLU 67 23.492 68.627 21.474 1.00 0.00 C ATOM 511 CD GLU 67 22.406 68.697 22.440 1.00 0.00 C ATOM 512 OE1 GLU 67 22.213 69.517 23.401 1.00 0.00 O ATOM 513 OE2 GLU 67 21.426 67.947 22.157 1.00 0.00 O ATOM 514 N VAL 68 27.376 65.882 20.479 1.00 0.00 N ATOM 515 CA VAL 68 28.094 64.627 20.533 1.00 0.00 C ATOM 516 C VAL 68 28.115 64.016 21.972 1.00 0.00 C ATOM 517 O VAL 68 27.320 64.456 22.822 1.00 0.00 O ATOM 518 CB VAL 68 29.457 64.841 19.877 1.00 0.00 C ATOM 519 CG1 VAL 68 30.386 63.603 20.153 1.00 0.00 C ATOM 520 CG2 VAL 68 29.365 65.116 18.361 1.00 0.00 C ATOM 521 N GLY 69 28.668 62.790 22.121 1.00 0.00 N ATOM 522 CA GLY 69 28.676 62.067 23.423 1.00 0.00 C ATOM 523 C GLY 69 28.997 63.114 24.486 1.00 0.00 C ATOM 524 O GLY 69 28.096 63.353 25.315 1.00 0.00 O ATOM 525 N PRO 70 30.270 63.415 24.816 1.00 0.00 N ATOM 526 CA PRO 70 30.417 64.568 25.714 1.00 0.00 C ATOM 527 C PRO 70 30.426 65.828 24.778 1.00 0.00 C ATOM 528 O PRO 70 29.775 65.735 23.728 1.00 0.00 O ATOM 529 CB PRO 70 31.643 64.503 26.530 1.00 0.00 C ATOM 530 CG PRO 70 32.043 62.973 26.447 1.00 0.00 C ATOM 531 CD PRO 70 31.468 62.475 25.114 1.00 0.00 C ATOM 532 N PRO 71 30.722 67.071 25.271 1.00 0.00 N ATOM 533 CA PRO 71 30.553 68.172 24.388 1.00 0.00 C ATOM 534 C PRO 71 31.255 68.026 22.975 1.00 0.00 C ATOM 535 O PRO 71 30.936 68.890 22.142 1.00 0.00 O ATOM 536 CB PRO 71 30.975 69.498 25.070 1.00 0.00 C ATOM 537 CG PRO 71 32.038 68.924 26.081 1.00 0.00 C ATOM 538 CD PRO 71 31.585 67.509 26.420 1.00 0.00 C ATOM 539 N ASP 72 32.197 67.107 22.630 1.00 0.00 N ATOM 540 CA ASP 72 32.686 67.124 21.243 1.00 0.00 C ATOM 541 C ASP 72 33.769 68.222 20.884 1.00 0.00 C ATOM 542 O ASP 72 34.602 67.906 20.024 1.00 0.00 O ATOM 543 CB ASP 72 31.514 67.091 20.339 1.00 0.00 C ATOM 544 CG ASP 72 31.690 66.655 18.950 1.00 0.00 C ATOM 545 OD1 ASP 72 31.999 65.484 18.755 1.00 0.00 O ATOM 546 OD2 ASP 72 31.534 67.463 18.045 1.00 0.00 O ATOM 547 N CYS 73 33.589 69.486 21.243 1.00 0.00 N ATOM 548 CA CYS 73 34.513 70.584 21.047 1.00 0.00 C ATOM 549 C CYS 73 34.617 71.111 19.567 1.00 0.00 C ATOM 550 O CYS 73 35.578 70.766 18.859 1.00 0.00 O ATOM 551 CB CYS 73 35.912 70.230 21.677 1.00 0.00 C ATOM 552 SG CYS 73 35.899 70.008 23.523 1.00 0.00 S ATOM 553 N ARG 74 33.577 71.808 19.124 1.00 0.00 N ATOM 554 CA ARG 74 33.535 72.460 17.827 1.00 0.00 C ATOM 555 C ARG 74 34.690 73.479 17.705 1.00 0.00 C ATOM 556 O ARG 74 34.913 74.291 18.622 1.00 0.00 O ATOM 557 CB ARG 74 32.238 73.202 17.597 1.00 0.00 C ATOM 558 CG ARG 74 32.146 73.946 16.262 1.00 0.00 C ATOM 559 CD ARG 74 30.754 74.400 15.983 1.00 0.00 C ATOM 560 NE ARG 74 30.552 74.954 14.644 1.00 0.00 N ATOM 561 CZ ARG 74 30.217 76.226 14.415 1.00 0.00 C ATOM 562 NH1 ARG 74 29.977 77.071 15.413 1.00 0.00 H ATOM 563 NH2 ARG 74 30.141 76.661 13.150 1.00 0.00 H ATOM 564 N CYS 75 35.491 73.400 16.640 1.00 0.00 N ATOM 565 CA CYS 75 36.598 74.272 16.334 1.00 0.00 C ATOM 566 C CYS 75 36.116 75.731 16.607 1.00 0.00 C ATOM 567 O CYS 75 36.739 76.376 17.442 1.00 0.00 O ATOM 568 CB CYS 75 37.113 74.046 14.893 1.00 0.00 C ATOM 569 SG CYS 75 38.258 75.398 14.478 1.00 0.00 S ATOM 570 N ASP 76 35.011 76.241 15.988 1.00 0.00 N ATOM 571 CA ASP 76 34.579 77.619 16.139 1.00 0.00 C ATOM 572 C ASP 76 33.449 77.828 17.235 1.00 0.00 C ATOM 573 O ASP 76 33.136 78.999 17.481 1.00 0.00 O ATOM 574 CB ASP 76 34.034 78.012 14.766 1.00 0.00 C ATOM 575 CG ASP 76 35.061 78.058 13.617 1.00 0.00 C ATOM 576 OD1 ASP 76 34.836 77.413 12.572 1.00 0.00 O ATOM 577 OD2 ASP 76 36.107 78.692 13.781 1.00 0.00 O ATOM 578 N ASN 77 32.942 76.797 17.965 1.00 0.00 N ATOM 579 CA ASN 77 31.869 76.981 18.987 1.00 0.00 C ATOM 580 C ASN 77 32.386 77.117 20.450 1.00 0.00 C ATOM 581 O ASN 77 31.574 77.011 21.381 1.00 0.00 O ATOM 582 CB ASN 77 30.807 75.922 18.866 1.00 0.00 C ATOM 583 CG ASN 77 29.453 76.379 19.470 1.00 0.00 C ATOM 584 OD1 ASN 77 28.948 77.458 19.130 1.00 0.00 O ATOM 585 ND2 ASN 77 28.917 75.550 20.313 1.00 0.00 N ATOM 586 N LEU 78 33.657 77.420 20.671 1.00 0.00 N ATOM 587 CA LEU 78 34.277 77.681 21.955 1.00 0.00 C ATOM 588 C LEU 78 34.199 76.551 23.042 1.00 0.00 C ATOM 589 O LEU 78 33.779 76.861 24.156 1.00 0.00 O ATOM 590 CB LEU 78 33.697 79.029 22.436 1.00 0.00 C ATOM 591 CG LEU 78 33.729 80.211 21.457 1.00 0.00 C ATOM 592 CD1 LEU 78 32.859 81.341 22.036 1.00 0.00 C ATOM 593 CD2 LEU 78 35.143 80.754 21.159 1.00 0.00 C ATOM 594 N CYS 79 34.545 75.262 22.755 1.00 0.00 N ATOM 595 CA CYS 79 34.609 74.137 23.733 1.00 0.00 C ATOM 596 C CYS 79 33.252 73.478 24.141 1.00 0.00 C ATOM 597 O CYS 79 33.197 72.252 24.021 1.00 0.00 O ATOM 598 CB CYS 79 35.365 74.581 25.017 1.00 0.00 C ATOM 599 SG CYS 79 36.118 73.171 25.901 1.00 0.00 S ATOM 600 N LYS 80 32.242 74.204 24.549 1.00 0.00 N ATOM 601 CA LYS 80 30.959 73.592 24.979 1.00 0.00 C ATOM 602 C LYS 80 31.113 72.800 26.347 1.00 0.00 C ATOM 603 O LYS 80 30.311 71.879 26.550 1.00 0.00 O ATOM 604 CB LYS 80 30.392 72.784 23.794 1.00 0.00 C ATOM 605 CG LYS 80 28.960 72.344 24.144 1.00 0.00 C ATOM 606 CD LYS 80 28.477 71.083 23.432 1.00 0.00 C ATOM 607 CE LYS 80 27.022 70.807 23.819 1.00 0.00 C ATOM 608 NZ LYS 80 26.396 69.662 23.159 1.00 0.00 N ATOM 609 N SER 81 31.717 73.383 27.379 1.00 0.00 N ATOM 610 CA SER 81 31.831 72.771 28.641 1.00 0.00 C ATOM 611 C SER 81 30.397 72.370 29.125 1.00 0.00 C ATOM 612 O SER 81 29.556 73.216 29.442 1.00 0.00 O ATOM 613 CB SER 81 32.816 73.485 29.626 1.00 0.00 C ATOM 614 OG SER 81 34.144 72.853 29.725 1.00 0.00 O ATOM 615 N TYR 82 30.340 71.090 29.489 1.00 0.00 N ATOM 616 CA TYR 82 29.196 70.373 29.881 1.00 0.00 C ATOM 617 C TYR 82 28.303 71.111 30.858 1.00 0.00 C ATOM 618 O TYR 82 27.183 71.420 30.431 1.00 0.00 O ATOM 619 CB TYR 82 29.602 68.953 30.345 1.00 0.00 C ATOM 620 CG TYR 82 28.388 68.141 30.827 1.00 0.00 C ATOM 621 CD1 TYR 82 27.569 67.498 29.918 1.00 0.00 C ATOM 622 CD2 TYR 82 28.070 68.068 32.186 1.00 0.00 C ATOM 623 CE1 TYR 82 26.460 66.763 30.328 1.00 0.00 C ATOM 624 CE2 TYR 82 26.965 67.345 32.622 1.00 0.00 C ATOM 625 CZ TYR 82 26.175 66.694 31.684 1.00 0.00 C ATOM 626 OH TYR 82 25.066 65.971 32.037 1.00 0.00 H ATOM 627 N SER 83 28.646 71.253 32.159 1.00 0.00 N ATOM 628 CA SER 83 27.786 72.062 32.974 1.00 0.00 C ATOM 629 C SER 83 28.081 73.540 32.640 1.00 0.00 C ATOM 630 O SER 83 27.362 74.045 31.750 1.00 0.00 O ATOM 631 CB SER 83 27.957 71.658 34.438 1.00 0.00 C ATOM 632 OG SER 83 27.386 72.443 35.431 1.00 0.00 O ATOM 633 N SER 84 29.298 74.043 33.021 1.00 0.00 N ATOM 634 CA SER 84 29.710 75.372 32.754 1.00 0.00 C ATOM 635 C SER 84 28.401 76.212 32.757 1.00 0.00 C ATOM 636 O SER 84 27.660 76.120 33.737 1.00 0.00 O ATOM 637 CB SER 84 30.431 75.305 31.460 1.00 0.00 C ATOM 638 OG SER 84 31.248 76.235 30.851 1.00 0.00 O ATOM 639 N CYS 85 28.306 77.095 31.816 1.00 0.00 N ATOM 640 CA CYS 85 27.102 77.925 31.481 1.00 0.00 C ATOM 641 C CYS 85 27.377 78.342 30.011 1.00 0.00 C ATOM 642 O CYS 85 26.381 78.532 29.313 1.00 0.00 O ATOM 643 CB CYS 85 26.878 79.118 32.451 1.00 0.00 C ATOM 644 SG CYS 85 26.277 78.578 34.026 1.00 0.00 S ATOM 645 N CYS 86 28.404 79.160 29.943 1.00 0.00 N ATOM 646 CA CYS 86 28.936 79.522 28.688 1.00 0.00 C ATOM 647 C CYS 86 29.371 78.121 28.104 1.00 0.00 C ATOM 648 O CYS 86 29.984 77.336 28.855 1.00 0.00 O ATOM 649 CB CYS 86 30.085 80.562 28.901 1.00 0.00 C ATOM 650 SG CYS 86 30.997 80.624 27.289 1.00 0.00 S ATOM 651 N HIS 87 29.489 77.977 26.821 1.00 0.00 N ATOM 652 CA HIS 87 29.718 76.619 26.283 1.00 0.00 C ATOM 653 C HIS 87 28.537 75.591 26.554 1.00 0.00 C ATOM 654 O HIS 87 28.736 74.457 26.999 1.00 0.00 O ATOM 655 CB HIS 87 31.025 76.093 26.760 1.00 0.00 C ATOM 656 CG HIS 87 32.180 76.947 26.997 1.00 0.00 C ATOM 657 ND1 HIS 87 32.587 76.868 28.312 1.00 0.00 N ATOM 658 CD2 HIS 87 32.842 77.978 26.418 1.00 0.00 C ATOM 659 CE1 HIS 87 33.483 77.828 28.525 1.00 0.00 C ATOM 660 NE2 HIS 87 33.663 78.498 27.382 1.00 0.00 N ATOM 661 N ASP 88 27.415 76.189 26.704 1.00 0.00 N ATOM 662 CA ASP 88 26.119 75.663 26.777 1.00 0.00 C ATOM 663 C ASP 88 25.579 76.278 25.530 1.00 0.00 C ATOM 664 O ASP 88 25.308 77.474 25.604 1.00 0.00 O ATOM 665 CB ASP 88 25.364 76.002 28.077 1.00 0.00 C ATOM 666 CG ASP 88 26.002 75.295 29.284 1.00 0.00 C ATOM 667 OD1 ASP 88 26.821 74.393 29.129 1.00 0.00 O ATOM 668 OD2 ASP 88 25.698 75.754 30.397 1.00 0.00 O ATOM 669 N PHE 89 24.939 75.563 24.677 1.00 0.00 N ATOM 670 CA PHE 89 24.494 75.928 23.302 1.00 0.00 C ATOM 671 C PHE 89 24.758 77.429 22.856 1.00 0.00 C ATOM 672 O PHE 89 25.436 77.589 21.839 1.00 0.00 O ATOM 673 CB PHE 89 23.057 75.569 23.239 1.00 0.00 C ATOM 674 CG PHE 89 21.944 76.436 23.904 1.00 0.00 C ATOM 675 CD1 PHE 89 21.497 77.621 23.318 1.00 0.00 C ATOM 676 CD2 PHE 89 21.469 76.056 25.144 1.00 0.00 C ATOM 677 CE1 PHE 89 20.588 78.437 23.978 1.00 0.00 C ATOM 678 CE2 PHE 89 20.565 76.876 25.787 1.00 0.00 C ATOM 679 CZ PHE 89 20.121 78.063 25.227 1.00 0.00 C ATOM 680 N ASP 90 24.170 78.461 23.485 1.00 0.00 N ATOM 681 CA ASP 90 24.405 79.887 23.196 1.00 0.00 C ATOM 682 C ASP 90 24.047 80.331 21.747 1.00 0.00 C ATOM 683 O ASP 90 24.680 81.245 21.209 1.00 0.00 O ATOM 684 CB ASP 90 25.895 80.132 23.455 1.00 0.00 C ATOM 685 CG ASP 90 26.428 80.044 24.858 1.00 0.00 C ATOM 686 OD1 ASP 90 25.585 80.156 25.838 1.00 0.00 O ATOM 687 OD2 ASP 90 27.590 79.848 25.087 1.00 0.00 O ATOM 688 N GLU 91 22.811 79.945 21.344 1.00 0.00 N ATOM 689 CA GLU 91 22.182 80.316 20.056 1.00 0.00 C ATOM 690 C GLU 91 22.801 79.540 18.858 1.00 0.00 C ATOM 691 O GLU 91 22.004 78.975 18.104 1.00 0.00 O ATOM 692 CB GLU 91 22.179 81.860 19.863 1.00 0.00 C ATOM 693 CG GLU 91 21.265 82.271 18.732 1.00 0.00 C ATOM 694 CD GLU 91 21.743 83.586 18.137 1.00 0.00 C ATOM 695 OE1 GLU 91 22.915 83.904 17.964 1.00 0.00 O ATOM 696 OE2 GLU 91 20.750 84.337 17.774 1.00 0.00 O ATOM 697 N LEU 92 24.120 79.611 18.608 1.00 0.00 N ATOM 698 CA LEU 92 24.786 78.826 17.566 1.00 0.00 C ATOM 699 C LEU 92 25.170 77.432 18.097 1.00 0.00 C ATOM 700 O LEU 92 26.213 77.251 18.737 1.00 0.00 O ATOM 701 CB LEU 92 26.003 79.595 17.073 1.00 0.00 C ATOM 702 CG LEU 92 25.838 81.075 16.783 1.00 0.00 C ATOM 703 CD1 LEU 92 27.087 81.722 16.361 1.00 0.00 C ATOM 704 CD2 LEU 92 24.794 81.269 15.702 1.00 0.00 C ATOM 705 N CYS 93 24.126 76.648 18.199 1.00 0.00 N ATOM 706 CA CYS 93 24.132 75.245 18.573 1.00 0.00 C ATOM 707 C CYS 93 23.311 74.614 17.490 1.00 0.00 C ATOM 708 O CYS 93 22.170 75.111 17.227 1.00 0.00 O ATOM 709 CB CYS 93 23.546 75.146 19.989 1.00 0.00 C ATOM 710 SG CYS 93 21.787 74.991 20.222 1.00 0.00 S ATOM 711 N LEU 94 23.741 73.548 16.902 1.00 0.00 N ATOM 712 CA LEU 94 22.990 73.097 15.799 1.00 0.00 C ATOM 713 C LEU 94 21.705 72.344 16.184 1.00 0.00 C ATOM 714 O LEU 94 21.003 71.986 15.250 1.00 0.00 O ATOM 715 CB LEU 94 23.725 72.229 14.901 1.00 0.00 C ATOM 716 CG LEU 94 24.950 72.542 14.207 1.00 0.00 C ATOM 717 CD1 LEU 94 25.360 71.306 13.409 1.00 0.00 C ATOM 718 CD2 LEU 94 24.758 73.718 13.291 1.00 0.00 C ATOM 719 N LYS 95 21.274 72.291 17.471 1.00 0.00 N ATOM 720 CA LYS 95 20.045 71.545 17.813 1.00 0.00 C ATOM 721 C LYS 95 18.857 72.483 17.393 1.00 0.00 C ATOM 722 O LYS 95 18.448 73.338 18.200 1.00 0.00 O ATOM 723 CB LYS 95 19.908 71.264 19.326 1.00 0.00 C ATOM 724 CG LYS 95 20.295 72.449 20.174 1.00 0.00 C ATOM 725 CD LYS 95 20.375 72.011 21.622 1.00 0.00 C ATOM 726 CE LYS 95 20.350 73.217 22.521 1.00 0.00 C ATOM 727 NZ LYS 95 20.321 72.703 23.938 1.00 0.00 N TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 90.49 33.3 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 92.24 25.0 56 100.0 56 ARMSMC BURIED . . . . . . . . 85.88 54.5 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 93.94 33.3 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 95.21 31.4 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 85.19 40.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 111.31 18.2 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 68.60 56.5 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 56.31 52.9 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 76.70 50.0 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 21.70 80.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 81.70 33.3 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 86.66 25.0 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 70.59 42.9 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 112.23 0.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 40.42 40.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 40.42 40.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 29.56 50.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 68.37 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.27 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.27 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.2317 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 9.10 29 100.0 29 CRMSCA BURIED . . . . . . . . 9.69 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.20 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 9.00 142 100.0 142 CRMSMC BURIED . . . . . . . . 9.71 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.90 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 10.56 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 10.72 103 100.0 103 CRMSSC BURIED . . . . . . . . 11.35 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.98 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 9.80 219 100.0 219 CRMSALL BURIED . . . . . . . . 10.44 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.285 1.000 0.500 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 8.085 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 8.811 1.000 0.500 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.292 1.000 0.500 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 8.091 1.000 0.500 142 100.0 142 ERRMC BURIED . . . . . . . . 8.813 1.000 0.500 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.851 1.000 0.500 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 9.521 1.000 0.500 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 9.773 1.000 0.500 103 100.0 103 ERRSC BURIED . . . . . . . . 10.050 1.000 0.500 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.967 1.000 0.500 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 8.815 1.000 0.500 219 100.0 219 ERRALL BURIED . . . . . . . . 9.362 1.000 0.500 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 2 4 9 29 40 40 DISTCA CA (P) 0.00 5.00 10.00 22.50 72.50 40 DISTCA CA (RMS) 0.00 1.67 2.37 3.35 6.76 DISTCA ALL (N) 2 13 29 59 198 303 303 DISTALL ALL (P) 0.66 4.29 9.57 19.47 65.35 303 DISTALL ALL (RMS) 0.97 1.60 2.20 3.34 6.88 DISTALL END of the results output