####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS304_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS304_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 62 - 71 4.33 48.82 LONGEST_CONTINUOUS_SEGMENT: 10 63 - 72 4.15 45.54 LONGEST_CONTINUOUS_SEGMENT: 10 64 - 73 4.73 42.87 LCS_AVERAGE: 22.81 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 65 - 71 1.52 43.66 LCS_AVERAGE: 13.12 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 65 - 69 0.83 49.32 LONGEST_CONTINUOUS_SEGMENT: 5 72 - 76 0.91 37.95 LCS_AVERAGE: 9.31 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 4 5 8 3 4 4 5 5 5 5 5 6 6 8 8 8 8 8 10 10 10 10 10 LCS_GDT S 57 S 57 4 5 9 3 4 4 5 5 5 5 5 6 6 8 8 8 9 9 10 10 10 10 10 LCS_GDT C 58 C 58 4 5 9 3 4 4 5 5 5 5 5 6 6 8 8 8 9 9 10 10 10 10 10 LCS_GDT K 59 K 59 4 5 9 3 4 4 5 5 5 5 7 7 7 8 8 9 9 9 10 10 10 11 12 LCS_GDT G 60 G 60 3 5 9 3 3 4 5 5 5 6 7 7 7 8 8 9 9 9 10 11 11 12 12 LCS_GDT R 61 R 61 3 5 9 3 3 4 4 5 5 6 7 7 7 8 8 9 9 9 10 11 11 12 12 LCS_GDT C 62 C 62 4 5 10 3 4 4 5 5 5 6 7 7 7 8 9 10 10 10 10 11 11 12 12 LCS_GDT F 63 F 63 4 5 10 3 4 4 5 5 5 6 7 7 8 9 9 10 10 10 10 11 11 12 12 LCS_GDT E 64 E 64 4 5 10 3 4 4 5 5 5 7 8 8 8 9 9 10 10 10 10 11 11 12 12 LCS_GDT L 65 L 65 5 7 10 3 4 6 6 7 7 7 8 8 8 9 9 10 10 10 10 11 11 12 12 LCS_GDT Q 66 Q 66 5 7 10 3 4 6 6 7 7 7 8 8 8 9 9 10 10 10 10 11 11 12 12 LCS_GDT E 67 E 67 5 7 10 3 4 6 6 7 7 7 8 8 8 9 9 10 10 10 10 11 11 12 12 LCS_GDT V 68 V 68 5 7 10 3 4 6 6 7 7 7 8 8 8 9 9 10 10 10 10 11 11 12 12 LCS_GDT G 69 G 69 5 7 10 3 4 6 6 7 7 7 8 8 8 9 9 10 10 10 10 11 11 12 12 LCS_GDT P 70 P 70 4 7 10 3 3 6 6 7 7 7 8 8 8 9 9 10 10 10 10 11 11 12 12 LCS_GDT P 71 P 71 4 7 10 3 3 5 6 7 7 7 8 8 8 9 9 10 10 10 10 10 11 12 12 LCS_GDT D 72 D 72 5 6 10 3 4 5 5 6 6 7 7 8 8 8 8 9 9 9 10 10 10 10 11 LCS_GDT C 73 C 73 5 6 10 3 4 5 5 6 6 7 7 7 7 8 8 8 9 9 9 9 10 10 10 LCS_GDT R 74 R 74 5 6 9 3 4 5 5 6 6 7 7 7 7 8 8 8 9 9 9 9 10 10 10 LCS_GDT C 75 C 75 5 6 9 3 4 5 5 6 6 7 7 7 7 8 8 8 9 9 9 9 10 10 10 LCS_GDT D 76 D 76 5 6 9 3 4 5 5 6 6 7 7 7 7 8 8 8 9 9 9 9 10 10 10 LCS_GDT N 77 N 77 3 6 9 3 3 5 5 6 6 7 7 7 7 8 8 8 9 9 9 9 10 10 10 LCS_GDT L 78 L 78 3 4 9 3 3 3 4 4 4 6 6 7 7 7 8 8 8 8 9 9 10 10 10 LCS_GDT C 79 C 79 3 4 9 3 3 3 4 4 4 5 6 6 7 7 7 8 8 8 9 9 10 10 10 LCS_GDT K 80 K 80 3 4 9 0 3 3 4 4 4 5 6 6 7 7 7 8 8 8 9 9 10 10 10 LCS_GDT S 81 S 81 3 4 9 0 3 3 4 4 5 6 7 7 8 8 8 8 8 8 9 9 10 10 11 LCS_GDT Y 82 Y 82 3 6 9 0 3 3 5 5 6 7 7 7 8 8 8 8 8 8 10 10 11 11 11 LCS_GDT S 83 S 83 3 6 9 0 3 4 5 5 6 7 7 7 8 8 8 8 8 9 10 10 11 11 11 LCS_GDT S 84 S 84 3 6 9 3 3 4 5 5 6 7 7 7 8 8 8 8 9 9 10 10 11 11 11 LCS_GDT C 85 C 85 3 6 9 3 3 4 5 5 6 7 7 7 8 8 8 8 9 9 10 10 11 11 11 LCS_GDT C 86 C 86 3 6 9 3 3 4 5 5 6 7 7 7 8 8 8 8 9 9 10 10 11 11 11 LCS_GDT H 87 H 87 3 6 9 3 3 4 4 5 6 7 7 7 8 8 8 8 9 9 10 10 11 11 11 LCS_GDT D 88 D 88 3 5 9 0 3 3 4 5 6 7 7 7 8 8 8 8 9 9 10 10 11 11 11 LCS_GDT F 89 F 89 3 4 9 0 3 3 4 4 4 4 5 6 6 8 8 8 9 9 10 10 11 11 11 LCS_GDT D 90 D 90 3 4 9 3 3 3 4 4 4 4 5 6 6 8 8 8 9 9 10 10 11 11 11 LCS_GDT E 91 E 91 3 3 8 3 3 3 3 3 4 4 5 6 6 8 8 8 9 9 10 10 11 11 11 LCS_GDT L 92 L 92 3 3 8 3 3 3 3 3 4 4 4 6 6 7 7 8 9 9 10 10 11 11 11 LCS_GDT C 93 C 93 3 3 8 3 3 3 3 3 4 4 4 5 5 7 7 8 9 9 9 9 10 10 10 LCS_GDT L 94 L 94 3 3 8 3 3 3 3 3 4 4 4 5 5 5 7 8 9 9 9 9 10 10 10 LCS_GDT K 95 K 95 3 3 7 0 3 3 3 3 4 4 4 5 5 5 6 7 9 9 9 9 10 10 10 LCS_AVERAGE LCS_A: 15.08 ( 9.31 13.12 22.81 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 4 6 6 7 7 7 8 8 8 9 9 10 10 10 10 11 11 12 12 GDT PERCENT_AT 7.50 10.00 15.00 15.00 17.50 17.50 17.50 20.00 20.00 20.00 22.50 22.50 25.00 25.00 25.00 25.00 27.50 27.50 30.00 30.00 GDT RMS_LOCAL 0.00 0.59 1.11 1.11 1.52 1.52 1.52 2.44 2.44 2.44 3.33 3.33 4.33 4.33 4.33 4.15 5.79 5.39 6.06 6.06 GDT RMS_ALL_AT 37.69 50.83 46.96 46.96 43.66 43.66 43.66 45.56 45.56 45.56 46.40 46.40 48.82 48.82 48.82 45.54 53.47 50.02 51.55 51.55 # Checking swapping # possible swapping detected: F 63 F 63 # possible swapping detected: E 64 E 64 # possible swapping detected: D 76 D 76 # possible swapping detected: Y 82 Y 82 # possible swapping detected: F 89 F 89 # possible swapping detected: E 91 E 91 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 39.891 0 0.614 0.614 40.545 0.000 0.000 LGA S 57 S 57 33.499 0 0.137 0.161 35.453 0.000 0.000 LGA C 58 C 58 28.074 0 0.638 0.771 30.210 0.000 0.000 LGA K 59 K 59 22.722 0 0.047 1.038 24.913 0.000 0.000 LGA G 60 G 60 18.025 0 0.632 0.632 19.405 0.000 0.000 LGA R 61 R 61 15.580 0 0.692 1.516 22.803 0.000 0.000 LGA C 62 C 62 12.413 0 0.058 0.747 13.949 0.000 0.000 LGA F 63 F 63 8.507 0 0.608 1.148 13.808 12.976 5.195 LGA E 64 E 64 4.601 0 0.066 1.352 10.025 29.524 15.608 LGA L 65 L 65 2.280 0 0.676 0.613 7.395 63.571 42.619 LGA Q 66 Q 66 2.010 0 0.081 1.006 9.669 79.643 43.333 LGA E 67 E 67 2.278 0 0.189 1.294 10.287 67.262 35.079 LGA V 68 V 68 2.049 0 0.085 0.176 6.610 73.452 51.429 LGA G 69 G 69 0.800 0 0.238 0.238 3.724 69.881 69.881 LGA P 70 P 70 1.450 0 0.057 0.131 3.160 72.976 67.415 LGA P 71 P 71 2.284 0 0.608 0.643 5.856 45.595 48.844 LGA D 72 D 72 8.228 3 0.165 0.237 10.101 6.667 3.690 LGA C 73 C 73 13.406 0 0.126 0.692 17.407 0.000 0.000 LGA R 74 R 74 20.318 0 0.077 0.983 26.148 0.000 0.000 LGA C 75 C 75 26.583 0 0.577 0.967 30.827 0.000 0.000 LGA D 76 D 76 32.237 0 0.138 1.265 33.629 0.000 0.000 LGA N 77 N 77 37.360 0 0.672 1.077 39.174 0.000 0.000 LGA L 78 L 78 38.533 0 0.645 1.128 39.961 0.000 0.000 LGA C 79 C 79 38.074 0 0.642 0.824 39.051 0.000 0.000 LGA K 80 K 80 41.902 0 0.625 1.013 45.473 0.000 0.000 LGA S 81 S 81 45.266 0 0.621 0.780 48.517 0.000 0.000 LGA Y 82 Y 82 45.551 0 0.691 1.435 54.676 0.000 0.000 LGA S 83 S 83 46.622 0 0.393 0.396 47.175 0.000 0.000 LGA S 84 S 84 49.452 0 0.669 0.873 50.794 0.000 0.000 LGA C 85 C 85 54.258 0 0.109 0.140 55.660 0.000 0.000 LGA C 86 C 86 55.993 0 0.000 0.063 57.256 0.000 0.000 LGA H 87 H 87 57.725 0 0.672 1.029 61.189 0.000 0.000 LGA D 88 D 88 63.523 0 0.552 1.079 66.692 0.000 0.000 LGA F 89 F 89 69.513 0 0.544 1.374 76.730 0.000 0.000 LGA D 90 D 90 73.001 0 0.616 1.232 75.093 0.000 0.000 LGA E 91 E 91 76.259 0 0.540 0.992 80.061 0.000 0.000 LGA L 92 L 92 81.435 0 0.716 0.918 84.460 0.000 0.000 LGA C 93 C 93 87.190 0 0.656 0.887 90.612 0.000 0.000 LGA L 94 L 94 90.741 0 0.489 0.978 93.326 0.000 0.000 LGA K 95 K 95 95.017 0 0.000 1.104 98.640 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 33.348 33.229 33.592 13.039 9.577 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 8 2.44 17.500 17.185 0.315 LGA_LOCAL RMSD: 2.443 Number of atoms: 8 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 45.556 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 33.348 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.078170 * X + 0.158954 * Y + -0.984187 * Z + 184.736130 Y_new = -0.953595 * X + -0.276009 * Y + -0.120318 * Z + 582.031860 Z_new = -0.290769 * X + 0.947920 * Y + 0.130002 * Z + 323.220581 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.489005 0.295031 1.434502 [DEG: -85.3137 16.9040 82.1909 ] ZXZ: -1.449149 1.440425 -0.297633 [DEG: -83.0301 82.5303 -17.0531 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS304_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS304_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 8 2.44 17.185 33.35 REMARK ---------------------------------------------------------- MOLECULE T0543TS304_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT 1g8tA ATOM 422 N GLY 56 3.166 81.102 -5.395 1.00117.16 N ATOM 423 CA GLY 56 3.163 80.469 -4.110 1.00117.16 C ATOM 424 C GLY 56 4.084 79.297 -4.182 1.00117.16 C ATOM 425 O GLY 56 4.299 78.727 -5.250 1.00117.16 O ATOM 426 N SER 57 4.658 78.906 -3.027 1.00184.81 N ATOM 427 CA SER 57 5.540 77.777 -3.004 1.00184.81 C ATOM 428 CB SER 57 7.008 78.136 -3.284 1.00184.81 C ATOM 429 OG SER 57 7.812 76.966 -3.244 1.00184.81 O ATOM 430 C SER 57 5.484 77.199 -1.629 1.00184.81 C ATOM 431 O SER 57 5.068 77.862 -0.682 1.00184.81 O ATOM 432 N CYS 58 5.889 75.921 -1.492 1.00104.94 N ATOM 433 CA CYS 58 5.896 75.305 -0.200 1.00104.94 C ATOM 434 CB CYS 58 4.958 74.090 -0.089 1.00104.94 C ATOM 435 SG CYS 58 4.992 73.330 1.562 1.00104.94 S ATOM 436 C CYS 58 7.286 74.812 0.041 1.00104.94 C ATOM 437 O CYS 58 7.918 74.253 -0.855 1.00104.94 O ATOM 438 N LYS 59 7.808 75.029 1.262 1.00318.49 N ATOM 439 CA LYS 59 9.133 74.572 1.556 1.00318.49 C ATOM 440 CB LYS 59 10.187 75.694 1.439 1.00318.49 C ATOM 441 CG LYS 59 11.644 75.248 1.604 1.00318.49 C ATOM 442 CD LYS 59 12.004 74.751 3.005 1.00318.49 C ATOM 443 CE LYS 59 12.027 75.856 4.062 1.00318.49 C ATOM 444 NZ LYS 59 13.130 76.802 3.783 1.00318.49 N ATOM 445 C LYS 59 9.132 74.079 2.966 1.00318.49 C ATOM 446 O LYS 59 8.495 74.667 3.838 1.00318.49 O ATOM 447 N GLY 60 9.835 72.958 3.222 1.00140.16 N ATOM 448 CA GLY 60 9.922 72.463 4.563 1.00140.16 C ATOM 449 C GLY 60 10.762 71.230 4.540 1.00140.16 C ATOM 450 O GLY 60 10.649 70.405 3.634 1.00140.16 O ATOM 451 N ARG 61 11.638 71.076 5.551 1.00288.88 N ATOM 452 CA ARG 61 12.461 69.907 5.625 1.00288.88 C ATOM 453 CB ARG 61 13.777 70.026 4.837 1.00288.88 C ATOM 454 CG ARG 61 14.653 68.775 4.919 1.00288.88 C ATOM 455 CD ARG 61 15.963 68.889 4.136 1.00288.88 C ATOM 456 NE ARG 61 15.614 68.997 2.693 1.00288.88 N ATOM 457 CZ ARG 61 15.479 67.867 1.937 1.00288.88 C ATOM 458 NH1 ARG 61 15.667 66.641 2.506 1.00288.88 H ATOM 459 NH2 ARG 61 15.157 67.965 0.615 1.00288.88 H ATOM 460 C ARG 61 12.823 69.709 7.061 1.00288.88 C ATOM 461 O ARG 61 12.823 70.656 7.845 1.00288.88 O ATOM 462 N CYS 62 13.121 68.456 7.449 1.00118.55 N ATOM 463 CA CYS 62 13.511 68.199 8.803 1.00118.55 C ATOM 464 CB CYS 62 12.503 67.339 9.584 1.00118.55 C ATOM 465 SG CYS 62 13.026 67.036 11.298 1.00118.55 S ATOM 466 C CYS 62 14.796 67.442 8.757 1.00118.55 C ATOM 467 O CYS 62 14.962 66.534 7.944 1.00118.55 O ATOM 468 N PHE 63 15.757 67.816 9.624 1.00286.25 N ATOM 469 CA PHE 63 17.006 67.115 9.642 1.00286.25 C ATOM 470 CB PHE 63 18.095 67.826 8.819 1.00286.25 C ATOM 471 CG PHE 63 19.333 67.002 8.879 1.00286.25 C ATOM 472 CD1 PHE 63 19.471 65.895 8.074 1.00286.25 C ATOM 473 CD2 PHE 63 20.357 67.345 9.728 1.00286.25 C ATOM 474 CE1 PHE 63 20.614 65.132 8.121 1.00286.25 C ATOM 475 CE2 PHE 63 21.502 66.586 9.778 1.00286.25 C ATOM 476 CZ PHE 63 21.633 65.478 8.976 1.00286.25 C ATOM 477 C PHE 63 17.459 67.066 11.068 1.00286.25 C ATOM 478 O PHE 63 17.137 67.953 11.856 1.00286.25 O ATOM 479 N GLU 64 18.203 66.006 11.448 1.00359.14 N ATOM 480 CA GLU 64 18.653 65.925 12.807 1.00359.14 C ATOM 481 CB GLU 64 17.736 65.070 13.702 1.00359.14 C ATOM 482 CG GLU 64 17.573 63.621 13.231 1.00359.14 C ATOM 483 CD GLU 64 18.754 62.803 13.738 1.00359.14 C ATOM 484 OE1 GLU 64 19.485 63.308 14.632 1.00359.14 O ATOM 485 OE2 GLU 64 18.938 61.661 13.240 1.00359.14 O ATOM 486 C GLU 64 20.015 65.310 12.831 1.00359.14 C ATOM 487 O GLU 64 20.335 64.442 12.019 1.00359.14 O ATOM 488 N LEU 65 20.867 65.776 13.768 1.00264.61 N ATOM 489 CA LEU 65 22.183 65.227 13.930 1.00264.61 C ATOM 490 CB LEU 65 23.322 66.178 13.521 1.00264.61 C ATOM 491 CG LEU 65 23.430 66.399 12.002 1.00264.61 C ATOM 492 CD1 LEU 65 24.581 67.354 11.657 1.00264.61 C ATOM 493 CD2 LEU 65 23.538 65.056 11.261 1.00264.61 C ATOM 494 C LEU 65 22.373 64.935 15.384 1.00264.61 C ATOM 495 O LEU 65 21.861 65.651 16.241 1.00264.61 O ATOM 496 N GLN 66 23.103 63.848 15.694 1.00275.88 N ATOM 497 CA GLN 66 23.363 63.527 17.066 1.00275.88 C ATOM 498 CB GLN 66 22.677 62.234 17.538 1.00275.88 C ATOM 499 CG GLN 66 22.953 61.895 19.004 1.00275.88 C ATOM 500 CD GLN 66 22.215 60.606 19.333 1.00275.88 C ATOM 501 OE1 GLN 66 22.266 60.116 20.461 1.00275.88 O ATOM 502 NE2 GLN 66 21.511 60.033 18.320 1.00275.88 N ATOM 503 C GLN 66 24.837 63.315 17.196 1.00275.88 C ATOM 504 O GLN 66 25.463 62.698 16.337 1.00275.88 O ATOM 505 N GLU 67 25.439 63.849 18.278 1.00288.81 N ATOM 506 CA GLU 67 26.846 63.662 18.474 1.00288.81 C ATOM 507 CB GLU 67 27.689 64.894 18.103 1.00288.81 C ATOM 508 CG GLU 67 27.348 66.136 18.931 1.00288.81 C ATOM 509 CD GLU 67 28.248 67.271 18.465 1.00288.81 C ATOM 510 OE1 GLU 67 29.073 67.033 17.542 1.00288.81 O ATOM 511 OE2 GLU 67 28.125 68.392 19.026 1.00288.81 O ATOM 512 C GLU 67 27.068 63.400 19.928 1.00288.81 C ATOM 513 O GLU 67 26.364 63.938 20.780 1.00288.81 O ATOM 514 N VAL 68 28.052 62.536 20.247 1.00 61.78 N ATOM 515 CA VAL 68 28.341 62.259 21.622 1.00 61.78 C ATOM 516 CB VAL 68 27.649 61.029 22.136 1.00 61.78 C ATOM 517 CG1 VAL 68 28.088 60.779 23.589 1.00 61.78 C ATOM 518 CG2 VAL 68 26.133 61.218 21.968 1.00 61.78 C ATOM 519 C VAL 68 29.814 62.016 21.727 1.00 61.78 C ATOM 520 O VAL 68 30.457 61.622 20.757 1.00 61.78 O ATOM 521 N GLY 69 30.392 62.273 22.918 1.00 81.85 N ATOM 522 CA GLY 69 31.789 62.016 23.111 1.00 81.85 C ATOM 523 C GLY 69 32.119 62.365 24.525 1.00 81.85 C ATOM 524 O GLY 69 31.696 63.395 25.048 1.00 81.85 O ATOM 525 N PRO 70 32.865 61.504 25.159 1.00 73.31 N ATOM 526 CA PRO 70 33.272 61.762 26.512 1.00 73.31 C ATOM 527 CD PRO 70 32.732 60.081 24.898 1.00 73.31 C ATOM 528 CB PRO 70 33.555 60.398 27.148 1.00 73.31 C ATOM 529 CG PRO 70 33.622 59.421 25.960 1.00 73.31 C ATOM 530 C PRO 70 34.439 62.693 26.542 1.00 73.31 C ATOM 531 O PRO 70 35.207 62.721 25.581 1.00 73.31 O ATOM 532 N PRO 71 34.568 63.453 27.592 1.00153.91 N ATOM 533 CA PRO 71 35.706 64.325 27.693 1.00153.91 C ATOM 534 CD PRO 71 33.380 64.049 28.184 1.00153.91 C ATOM 535 CB PRO 71 35.314 65.424 28.678 1.00153.91 C ATOM 536 CG PRO 71 33.781 65.481 28.568 1.00153.91 C ATOM 537 C PRO 71 36.906 63.548 28.128 1.00153.91 C ATOM 538 O PRO 71 36.740 62.503 28.755 1.00153.91 O ATOM 539 N ASP 72 38.120 64.028 27.794 1.00172.51 N ATOM 540 CA ASP 72 39.311 63.355 28.226 1.00172.51 C ATOM 541 CB ASP 72 40.120 62.737 27.073 1.00172.51 C ATOM 542 CG ASP 72 41.252 61.912 27.668 1.00172.51 C ATOM 543 OD1 ASP 72 41.409 61.931 28.918 1.00172.51 O ATOM 544 OD2 ASP 72 41.974 61.246 26.879 1.00172.51 O ATOM 545 C ASP 72 40.179 64.384 28.875 1.00172.51 C ATOM 546 O ASP 72 40.549 65.375 28.248 1.00172.51 O ATOM 547 N CYS 73 40.514 64.190 30.166 1.00106.93 N ATOM 548 CA CYS 73 41.351 65.155 30.816 1.00106.93 C ATOM 549 CB CYS 73 40.608 66.019 31.849 1.00106.93 C ATOM 550 SG CYS 73 41.695 67.233 32.654 1.00106.93 S ATOM 551 C CYS 73 42.429 64.424 31.549 1.00106.93 C ATOM 552 O CYS 73 42.214 63.326 32.061 1.00106.93 O ATOM 553 N ARG 74 43.637 65.021 31.594 1.00266.68 N ATOM 554 CA ARG 74 44.727 64.428 32.314 1.00266.68 C ATOM 555 CB ARG 74 45.690 63.622 31.426 1.00266.68 C ATOM 556 CG ARG 74 46.346 64.452 30.321 1.00266.68 C ATOM 557 CD ARG 74 47.302 63.645 29.440 1.00266.68 C ATOM 558 NE ARG 74 47.861 64.571 28.416 1.00266.68 N ATOM 559 CZ ARG 74 48.896 64.167 27.624 1.00266.68 C ATOM 560 NH1 ARG 74 49.419 62.914 27.770 1.00266.68 H ATOM 561 NH2 ARG 74 49.408 65.015 26.685 1.00266.68 H ATOM 562 C ARG 74 45.509 65.549 32.917 1.00266.68 C ATOM 563 O ARG 74 45.534 66.655 32.381 1.00266.68 O ATOM 564 N CYS 75 46.156 65.300 34.074 1.00112.70 N ATOM 565 CA CYS 75 46.928 66.342 34.685 1.00112.70 C ATOM 566 CB CYS 75 46.281 66.924 35.954 1.00112.70 C ATOM 567 SG CYS 75 46.116 65.690 37.278 1.00112.70 S ATOM 568 C CYS 75 48.249 65.771 35.088 1.00112.70 C ATOM 569 O CYS 75 48.337 64.623 35.519 1.00112.70 O ATOM 570 N ASP 76 49.324 66.570 34.932 1.00158.17 N ATOM 571 CA ASP 76 50.632 66.134 35.325 1.00158.17 C ATOM 572 CB ASP 76 51.598 65.940 34.143 1.00158.17 C ATOM 573 CG ASP 76 51.127 64.733 33.345 1.00158.17 C ATOM 574 OD1 ASP 76 50.191 64.037 33.820 1.00158.17 O ATOM 575 OD2 ASP 76 51.700 64.488 32.250 1.00158.17 O ATOM 576 C ASP 76 51.208 67.203 36.196 1.00158.17 C ATOM 577 O ASP 76 51.131 68.386 35.868 1.00158.17 O ATOM 578 N ASN 77 51.786 66.818 37.351 1.00207.13 N ATOM 579 CA ASN 77 52.361 67.809 38.212 1.00207.13 C ATOM 580 CB ASN 77 51.674 67.903 39.585 1.00207.13 C ATOM 581 CG ASN 77 50.264 68.436 39.369 1.00207.13 C ATOM 582 OD1 ASN 77 49.280 67.779 39.706 1.00207.13 O ATOM 583 ND2 ASN 77 50.161 69.662 38.792 1.00207.13 N ATOM 584 C ASN 77 53.786 67.434 38.462 1.00207.13 C ATOM 585 O ASN 77 54.104 66.264 38.674 1.00207.13 O ATOM 586 N LEU 78 54.693 68.431 38.416 1.00264.67 N ATOM 587 CA LEU 78 56.079 68.173 38.678 1.00264.67 C ATOM 588 CB LEU 78 56.977 68.313 37.436 1.00264.67 C ATOM 589 CG LEU 78 56.664 67.284 36.333 1.00264.67 C ATOM 590 CD1 LEU 78 55.246 67.479 35.773 1.00264.67 C ATOM 591 CD2 LEU 78 57.744 67.295 35.238 1.00264.67 C ATOM 592 C LEU 78 56.542 69.188 39.672 1.00264.67 C ATOM 593 O LEU 78 56.101 70.337 39.647 1.00264.67 O ATOM 594 N CYS 79 57.434 68.783 40.598 1.00 72.27 N ATOM 595 CA CYS 79 57.931 69.719 41.563 1.00 72.27 C ATOM 596 CB CYS 79 57.434 69.450 42.994 1.00 72.27 C ATOM 597 SG CYS 79 55.634 69.652 43.154 1.00 72.27 S ATOM 598 C CYS 79 59.422 69.598 41.588 1.00 72.27 C ATOM 599 O CYS 79 59.968 68.506 41.443 1.00 72.27 O ATOM 600 N LYS 80 60.123 70.738 41.752 1.00251.25 N ATOM 601 CA LYS 80 61.555 70.706 41.817 1.00251.25 C ATOM 602 CB LYS 80 62.219 70.998 40.456 1.00251.25 C ATOM 603 CG LYS 80 63.741 70.814 40.420 1.00251.25 C ATOM 604 CD LYS 80 64.520 71.804 41.287 1.00251.25 C ATOM 605 CE LYS 80 64.528 73.229 40.731 1.00251.25 C ATOM 606 NZ LYS 80 65.302 74.118 41.628 1.00251.25 N ATOM 607 C LYS 80 61.975 71.773 42.779 1.00251.25 C ATOM 608 O LYS 80 61.403 72.862 42.795 1.00251.25 O ATOM 609 N SER 81 62.979 71.478 43.630 1.00181.86 N ATOM 610 CA SER 81 63.439 72.475 44.552 1.00181.86 C ATOM 611 CB SER 81 62.985 72.232 46.001 1.00181.86 C ATOM 612 OG SER 81 63.480 73.260 46.847 1.00181.86 O ATOM 613 C SER 81 64.936 72.443 44.551 1.00181.86 C ATOM 614 O SER 81 65.543 71.382 44.413 1.00181.86 O ATOM 615 N TYR 82 65.568 73.626 44.684 1.00303.86 N ATOM 616 CA TYR 82 67.000 73.691 44.723 1.00303.86 C ATOM 617 CB TYR 82 67.615 74.230 43.419 1.00303.86 C ATOM 618 CG TYR 82 69.095 74.248 43.578 1.00303.86 C ATOM 619 CD1 TYR 82 69.830 73.098 43.411 1.00303.86 C ATOM 620 CD2 TYR 82 69.749 75.419 43.887 1.00303.86 C ATOM 621 CE1 TYR 82 71.198 73.111 43.554 1.00303.86 C ATOM 622 CE2 TYR 82 71.116 75.439 44.032 1.00303.86 C ATOM 623 CZ TYR 82 71.842 74.284 43.866 1.00303.86 C ATOM 624 OH TYR 82 73.246 74.302 44.014 1.00303.86 H ATOM 625 C TYR 82 67.373 74.635 45.821 1.00303.86 C ATOM 626 O TYR 82 66.652 75.594 46.092 1.00303.86 O ATOM 627 N SER 83 68.506 74.377 46.507 1.00232.62 N ATOM 628 CA SER 83 68.911 75.269 47.555 1.00232.62 C ATOM 629 CB SER 83 68.384 74.867 48.943 1.00232.62 C ATOM 630 OG SER 83 66.966 74.932 48.965 1.00232.62 O ATOM 631 C SER 83 70.405 75.253 47.632 1.00232.62 C ATOM 632 O SER 83 71.048 74.290 47.217 1.00232.62 O ATOM 633 N SER 84 70.997 76.349 48.152 1.00202.19 N ATOM 634 CA SER 84 72.422 76.411 48.309 1.00202.19 C ATOM 635 CB SER 84 73.162 76.947 47.072 1.00202.19 C ATOM 636 OG SER 84 73.009 76.048 45.984 1.00202.19 O ATOM 637 C SER 84 72.709 77.358 49.431 1.00202.19 C ATOM 638 O SER 84 71.882 78.202 49.767 1.00202.19 O ATOM 639 N CYS 85 73.895 77.220 50.060 1.00 43.29 N ATOM 640 CA CYS 85 74.255 78.111 51.124 1.00 43.29 C ATOM 641 CB CYS 85 73.972 77.543 52.525 1.00 43.29 C ATOM 642 SG CYS 85 72.198 77.284 52.825 1.00 43.29 S ATOM 643 C CYS 85 75.730 78.347 51.037 1.00 43.29 C ATOM 644 O CYS 85 76.476 77.493 50.561 1.00 43.29 O ATOM 645 N CYS 86 76.188 79.536 51.478 1.00 52.96 N ATOM 646 CA CYS 86 77.594 79.820 51.455 1.00 52.96 C ATOM 647 CB CYS 86 78.047 80.585 50.200 1.00 52.96 C ATOM 648 SG CYS 86 77.826 79.617 48.676 1.00 52.96 S ATOM 649 C CYS 86 77.902 80.689 52.632 1.00 52.96 C ATOM 650 O CYS 86 77.039 81.418 53.120 1.00 52.96 O ATOM 651 N HIS 87 79.151 80.613 53.139 1.00287.90 N ATOM 652 CA HIS 87 79.532 81.443 54.246 1.00287.90 C ATOM 653 ND1 HIS 87 78.995 82.429 57.410 1.00287.90 N ATOM 654 CG HIS 87 79.874 81.598 56.752 1.00287.90 C ATOM 655 CB HIS 87 79.495 80.715 55.601 1.00287.90 C ATOM 656 NE2 HIS 87 80.973 82.691 58.393 1.00287.90 N ATOM 657 CD2 HIS 87 81.077 81.771 57.365 1.00287.90 C ATOM 658 CE1 HIS 87 79.704 83.059 58.381 1.00287.90 C ATOM 659 C HIS 87 80.946 81.875 54.018 1.00287.90 C ATOM 660 O HIS 87 81.779 81.090 53.569 1.00287.90 O ATOM 661 N ASP 88 81.248 83.158 54.306 1.00197.77 N ATOM 662 CA ASP 88 82.587 83.646 54.128 1.00197.77 C ATOM 663 CB ASP 88 82.730 84.639 52.962 1.00197.77 C ATOM 664 CG ASP 88 82.538 83.876 51.659 1.00197.77 C ATOM 665 OD1 ASP 88 82.571 82.617 51.700 1.00197.77 O ATOM 666 OD2 ASP 88 82.355 84.542 50.605 1.00197.77 O ATOM 667 C ASP 88 82.979 84.379 55.372 1.00197.77 C ATOM 668 O ASP 88 82.217 85.197 55.885 1.00197.77 O ATOM 669 N PHE 89 84.180 84.084 55.909 1.00291.37 N ATOM 670 CA PHE 89 84.630 84.785 57.078 1.00291.37 C ATOM 671 CB PHE 89 84.684 83.905 58.339 1.00291.37 C ATOM 672 CG PHE 89 85.161 84.761 59.462 1.00291.37 C ATOM 673 CD1 PHE 89 84.282 85.556 60.157 1.00291.37 C ATOM 674 CD2 PHE 89 86.491 84.765 59.820 1.00291.37 C ATOM 675 CE1 PHE 89 84.720 86.346 61.195 1.00291.37 C ATOM 676 CE2 PHE 89 86.935 85.553 60.855 1.00291.37 C ATOM 677 CZ PHE 89 86.049 86.345 61.545 1.00291.37 C ATOM 678 C PHE 89 86.023 85.260 56.813 1.00291.37 C ATOM 679 O PHE 89 86.822 84.552 56.201 1.00291.37 O ATOM 680 N ASP 90 86.345 86.493 57.253 1.00230.74 N ATOM 681 CA ASP 90 87.671 87.007 57.056 1.00230.74 C ATOM 682 CB ASP 90 87.781 87.976 55.865 1.00230.74 C ATOM 683 CG ASP 90 89.252 88.307 55.646 1.00230.74 C ATOM 684 OD1 ASP 90 90.095 87.829 56.452 1.00230.74 O ATOM 685 OD2 ASP 90 89.550 89.043 54.669 1.00230.74 O ATOM 686 C ASP 90 88.052 87.772 58.284 1.00230.74 C ATOM 687 O ASP 90 87.317 88.656 58.724 1.00230.74 O ATOM 688 N GLU 91 89.210 87.438 58.890 1.00299.69 N ATOM 689 CA GLU 91 89.637 88.167 60.050 1.00299.69 C ATOM 690 CB GLU 91 89.510 87.370 61.359 1.00299.69 C ATOM 691 CG GLU 91 89.963 88.151 62.595 1.00299.69 C ATOM 692 CD GLU 91 88.902 89.198 62.903 1.00299.69 C ATOM 693 OE1 GLU 91 87.893 89.256 62.150 1.00299.69 O ATOM 694 OE2 GLU 91 89.087 89.953 63.894 1.00299.69 O ATOM 695 C GLU 91 91.086 88.498 59.876 1.00299.69 C ATOM 696 O GLU 91 91.870 87.666 59.423 1.00299.69 O ATOM 697 N LEU 92 91.476 89.745 60.213 1.00319.16 N ATOM 698 CA LEU 92 92.854 90.126 60.104 1.00319.16 C ATOM 699 CB LEU 92 93.148 90.981 58.851 1.00319.16 C ATOM 700 CG LEU 92 94.621 91.407 58.659 1.00319.16 C ATOM 701 CD1 LEU 92 95.069 92.477 59.669 1.00319.16 C ATOM 702 CD2 LEU 92 95.549 90.182 58.638 1.00319.16 C ATOM 703 C LEU 92 93.185 90.936 61.317 1.00319.16 C ATOM 704 O LEU 92 92.357 91.704 61.804 1.00319.16 O ATOM 705 N CYS 93 94.410 90.768 61.855 1.00114.60 N ATOM 706 CA CYS 93 94.807 91.545 62.995 1.00114.60 C ATOM 707 CB CYS 93 94.750 90.769 64.321 1.00114.60 C ATOM 708 SG CYS 93 95.256 91.783 65.743 1.00114.60 S ATOM 709 C CYS 93 96.230 91.961 62.789 1.00114.60 C ATOM 710 O CYS 93 97.041 91.188 62.282 1.00114.60 O ATOM 711 N LEU 94 96.565 93.214 63.159 1.00245.74 N ATOM 712 CA LEU 94 97.917 93.671 63.012 1.00245.74 C ATOM 713 CB LEU 94 98.090 94.618 61.802 1.00245.74 C ATOM 714 CG LEU 94 99.535 95.014 61.416 1.00245.74 C ATOM 715 CD1 LEU 94 99.522 95.955 60.199 1.00245.74 C ATOM 716 CD2 LEU 94 100.337 95.623 62.580 1.00245.74 C ATOM 717 C LEU 94 98.253 94.420 64.264 1.00245.74 C ATOM 718 O LEU 94 97.452 95.215 64.752 1.00245.74 O ATOM 719 N LYS 95 99.450 94.168 64.833 1.00298.90 N ATOM 720 CA LYS 95 99.849 94.886 66.010 1.00298.90 C ATOM 721 CB LYS 95 99.702 94.074 67.307 1.00298.90 C ATOM 722 CG LYS 95 100.126 94.844 68.560 1.00298.90 C ATOM 723 CD LYS 95 99.687 94.180 69.867 1.00298.90 C ATOM 724 CE LYS 95 100.111 94.953 71.117 1.00298.90 C ATOM 725 NZ LYS 95 99.647 94.243 72.331 1.00298.90 N ATOM 726 C LYS 95 101.298 95.227 65.866 1.00298.90 C ATOM 727 O LYS 95 102.077 94.443 65.326 1.00298.90 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 97.52 25.6 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 101.21 23.2 56 100.0 56 ARMSMC BURIED . . . . . . . . 87.42 31.8 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 94.63 33.3 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 95.94 31.4 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 92.32 32.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 99.68 36.4 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 74.88 43.5 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 65.05 47.1 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 77.35 38.9 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 65.22 60.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 85.73 33.3 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 79.73 37.5 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 82.27 42.9 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 96.84 0.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 63.73 40.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 63.73 40.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 71.19 25.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 6.02 100.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 33.35 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 33.35 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.8337 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 33.87 29 100.0 29 CRMSCA BURIED . . . . . . . . 31.94 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 33.17 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 33.62 142 100.0 142 CRMSMC BURIED . . . . . . . . 31.99 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 34.20 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 34.08 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 35.15 103 100.0 103 CRMSSC BURIED . . . . . . . . 31.61 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 33.69 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 34.42 219 100.0 219 CRMSALL BURIED . . . . . . . . 31.71 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 171.756 0.712 0.748 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 185.379 0.732 0.764 29 100.0 29 ERRCA BURIED . . . . . . . . 135.840 0.660 0.705 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 173.261 0.716 0.750 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 187.775 0.738 0.768 142 100.0 142 ERRMC BURIED . . . . . . . . 135.789 0.659 0.704 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 208.758 0.755 0.782 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 207.875 0.755 0.781 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 220.420 0.769 0.793 103 100.0 103 ERRSC BURIED . . . . . . . . 178.727 0.722 0.755 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 189.292 0.733 0.765 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 201.933 0.750 0.778 219 100.0 219 ERRALL BURIED . . . . . . . . 156.334 0.690 0.730 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 0 7 40 40 DISTCA CA (P) 0.00 0.00 0.00 0.00 17.50 40 DISTCA CA (RMS) 0.00 0.00 0.00 0.00 8.02 DISTCA ALL (N) 0 0 0 1 51 303 303 DISTALL ALL (P) 0.00 0.00 0.00 0.33 16.83 303 DISTALL ALL (RMS) 0.00 0.00 0.00 4.57 8.01 DISTALL END of the results output