####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 45 ( 221), selected 45 , name T0543TS302_1-D2 # Molecule2: number of CA atoms 45 ( 345), selected 45 , name T0543-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS302_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 29 112 - 140 4.90 8.96 LCS_AVERAGE: 55.01 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 126 - 138 1.96 11.09 LCS_AVERAGE: 21.33 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 122 - 129 0.87 12.07 LCS_AVERAGE: 12.59 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 45 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT T 96 T 96 3 5 15 3 3 3 4 7 8 8 8 9 14 15 16 17 21 22 23 24 29 33 34 LCS_GDT A 97 A 97 3 5 15 3 3 3 4 5 5 9 12 12 12 13 14 16 20 26 27 27 28 30 34 LCS_GDT R 98 R 98 3 5 15 3 3 3 4 8 11 12 16 16 17 21 26 29 30 33 34 35 35 36 37 LCS_GDT G 99 G 99 3 5 15 3 4 4 5 7 12 15 18 19 22 25 28 29 31 33 34 35 35 36 37 LCS_GDT W 100 W 100 3 5 15 3 4 4 5 7 11 15 16 19 22 24 28 29 31 33 34 35 35 36 37 LCS_GDT E 101 E 101 3 8 18 3 4 7 9 12 14 21 23 23 24 25 28 29 31 33 34 35 35 36 37 LCS_GDT C 102 C 102 6 8 18 4 6 10 14 15 17 21 23 23 24 25 28 29 31 33 34 35 35 36 37 LCS_GDT T 103 T 103 6 8 18 4 6 10 14 15 17 21 23 23 24 25 28 29 31 33 34 35 35 36 37 LCS_GDT K 104 K 104 6 8 18 4 6 10 14 15 17 21 23 23 24 25 26 28 28 30 33 35 35 36 37 LCS_GDT D 105 D 105 6 8 18 4 6 10 14 15 17 21 23 23 24 25 26 28 28 30 33 35 35 36 37 LCS_GDT R 106 R 106 6 8 18 4 6 7 8 10 11 12 23 23 24 25 26 28 28 30 33 35 35 36 37 LCS_GDT C 107 C 107 6 8 18 4 6 7 9 10 13 16 18 23 24 25 26 28 28 28 30 32 34 36 37 LCS_GDT G 108 G 108 3 8 18 3 3 5 8 10 11 12 13 14 17 24 24 25 26 27 28 29 30 31 32 LCS_GDT E 109 E 109 4 5 18 3 4 4 7 7 9 12 23 23 24 25 26 28 28 30 31 32 35 36 37 LCS_GDT V 110 V 110 4 5 18 3 4 4 7 12 15 21 23 23 24 25 26 28 29 31 33 35 35 36 37 LCS_GDT R 111 R 111 4 6 18 3 4 4 5 6 10 15 16 20 23 25 28 29 31 33 34 35 35 36 37 LCS_GDT N 112 N 112 4 6 29 3 4 4 5 6 9 10 14 18 21 25 28 29 31 33 34 35 35 36 37 LCS_GDT E 113 E 113 3 8 29 3 3 4 6 7 9 11 16 20 21 22 26 28 31 33 34 35 35 35 36 LCS_GDT E 114 E 114 6 8 29 4 5 6 7 10 13 16 18 20 21 24 25 28 30 33 34 35 35 35 36 LCS_GDT N 115 N 115 6 8 29 4 5 6 7 10 13 15 18 20 21 24 25 28 29 33 34 35 35 35 36 LCS_GDT A 116 A 116 6 8 29 4 5 6 7 9 9 11 12 14 17 19 22 22 27 28 31 32 34 34 36 LCS_GDT C 117 C 117 6 8 29 4 4 6 7 9 9 12 16 17 17 20 24 27 29 32 33 35 35 35 36 LCS_GDT H 118 H 118 6 8 29 3 5 8 9 12 14 18 19 20 22 25 28 29 31 33 34 35 35 36 37 LCS_GDT C 119 C 119 6 12 29 5 6 8 11 11 16 21 23 23 24 25 28 29 31 33 34 35 35 36 37 LCS_GDT S 120 S 120 5 12 29 5 6 8 12 15 17 21 23 23 24 25 28 29 31 33 34 35 35 36 37 LCS_GDT E 121 E 121 5 12 29 5 6 8 14 15 17 21 23 23 24 25 28 29 31 33 34 35 35 36 37 LCS_GDT D 122 D 122 8 12 29 5 7 10 14 15 17 21 23 23 24 25 28 29 31 33 34 35 35 36 37 LCS_GDT C 123 C 123 8 12 29 5 7 10 14 15 17 21 23 23 24 25 28 29 31 33 34 35 35 36 37 LCS_GDT L 124 L 124 8 12 29 5 6 10 14 15 17 21 23 23 24 25 28 29 31 33 34 35 35 36 37 LCS_GDT S 125 S 125 8 12 29 5 7 10 14 15 17 21 23 23 24 25 28 29 31 33 34 35 35 36 37 LCS_GDT R 126 R 126 8 13 29 5 7 10 14 15 17 21 23 23 24 25 28 29 31 33 34 35 35 36 37 LCS_GDT G 127 G 127 8 13 29 3 7 8 14 15 17 21 23 23 24 25 27 28 31 33 34 35 35 36 37 LCS_GDT D 128 D 128 8 13 29 5 7 10 14 15 17 21 23 23 24 25 27 28 31 33 34 35 35 36 37 LCS_GDT C 129 C 129 8 13 29 5 7 9 14 15 17 21 23 23 24 25 28 29 31 33 34 35 35 36 37 LCS_GDT C 130 C 130 6 13 29 5 6 9 14 15 17 21 23 23 24 25 28 29 31 33 34 35 35 36 37 LCS_GDT T 131 T 131 6 13 29 5 6 9 10 12 16 21 23 23 24 25 28 29 31 33 34 35 35 36 37 LCS_GDT N 132 N 132 7 13 29 5 6 9 10 15 17 21 23 23 24 25 28 29 31 33 34 35 35 36 37 LCS_GDT Y 133 Y 133 7 13 29 5 6 8 10 12 17 21 23 23 24 25 28 29 31 33 34 35 35 36 37 LCS_GDT Q 134 Q 134 7 13 29 4 5 9 10 12 14 18 20 22 23 25 28 29 31 33 34 35 35 36 37 LCS_GDT V 135 V 135 7 13 29 4 6 9 10 12 14 18 20 22 24 25 28 29 31 33 34 35 35 36 37 LCS_GDT V 136 V 136 7 13 29 4 6 9 10 12 14 18 19 22 23 25 28 29 31 33 34 35 35 36 37 LCS_GDT C 137 C 137 7 13 29 4 6 9 10 12 14 18 19 20 22 25 28 29 31 33 34 35 35 36 37 LCS_GDT K 138 K 138 7 13 29 4 6 9 10 12 14 18 19 20 22 25 28 29 31 33 34 35 35 36 37 LCS_GDT G 139 G 139 4 12 29 3 4 4 9 12 14 18 19 20 22 25 28 29 31 33 34 35 35 36 37 LCS_GDT E 140 E 140 4 8 29 3 3 4 5 6 6 8 10 19 22 24 28 29 31 33 34 35 35 36 37 LCS_AVERAGE LCS_A: 29.65 ( 12.59 21.33 55.01 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 7 10 14 15 17 21 23 23 24 25 28 29 31 33 34 35 35 36 37 GDT PERCENT_AT 11.11 15.56 22.22 31.11 33.33 37.78 46.67 51.11 51.11 53.33 55.56 62.22 64.44 68.89 73.33 75.56 77.78 77.78 80.00 82.22 GDT RMS_LOCAL 0.23 0.81 1.16 1.43 1.52 2.04 2.46 2.71 2.71 2.86 3.14 3.98 4.11 4.45 4.75 4.89 5.06 5.06 5.46 5.64 GDT RMS_ALL_AT 10.78 11.93 11.49 11.30 11.15 10.73 10.14 10.38 10.38 10.56 10.35 7.84 7.83 7.89 7.93 8.01 8.08 8.08 8.47 8.31 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA T 96 T 96 21.626 2 0.646 0.579 23.853 0.000 0.000 LGA A 97 A 97 19.562 0 0.079 0.081 20.496 0.000 0.000 LGA R 98 R 98 13.929 6 0.606 0.560 16.262 0.000 0.000 LGA G 99 G 99 11.222 0 0.664 0.664 12.335 0.000 0.000 LGA W 100 W 100 9.970 9 0.621 0.587 11.609 2.619 0.748 LGA E 101 E 101 3.227 4 0.028 0.061 5.320 42.619 27.989 LGA C 102 C 102 1.315 1 0.677 0.617 3.736 67.619 55.873 LGA T 103 T 103 1.617 2 0.132 0.176 2.036 79.286 54.558 LGA K 104 K 104 2.956 4 0.028 0.033 4.182 59.167 30.423 LGA D 105 D 105 0.926 3 0.149 0.160 2.897 73.452 46.905 LGA R 106 R 106 4.490 6 0.022 0.023 6.456 34.405 14.892 LGA C 107 C 107 5.517 1 0.620 0.560 6.931 22.262 19.206 LGA G 108 G 108 8.432 0 0.686 0.686 8.432 12.262 12.262 LGA E 109 E 109 3.963 4 0.109 0.125 5.539 42.976 22.593 LGA V 110 V 110 3.938 2 0.060 0.086 6.747 33.810 21.769 LGA R 111 R 111 8.365 6 0.183 0.271 10.883 5.476 2.121 LGA N 112 N 112 14.440 3 0.627 0.581 17.902 0.000 0.000 LGA E 113 E 113 19.864 4 0.669 0.605 20.884 0.000 0.000 LGA E 114 E 114 22.530 4 0.592 0.535 24.195 0.000 0.000 LGA N 115 N 115 18.998 3 0.016 0.016 19.629 0.000 0.000 LGA A 116 A 116 20.935 0 0.039 0.044 22.498 0.000 0.000 LGA C 117 C 117 14.437 1 0.079 0.118 16.818 0.000 0.000 LGA H 118 H 118 8.437 5 0.642 0.611 10.301 14.405 5.905 LGA C 119 C 119 3.608 1 0.488 0.466 5.787 40.714 30.714 LGA S 120 S 120 1.862 1 0.032 0.036 2.263 70.833 59.365 LGA E 121 E 121 2.280 4 0.107 0.122 2.990 64.881 36.032 LGA D 122 D 122 2.277 3 0.218 0.228 2.586 68.810 41.548 LGA C 123 C 123 1.657 1 0.040 0.046 1.997 79.405 65.079 LGA L 124 L 124 0.761 3 0.076 0.073 1.531 85.952 52.083 LGA S 125 S 125 0.710 1 0.141 0.153 1.201 88.214 73.889 LGA R 126 R 126 1.388 6 0.035 0.039 2.396 77.381 35.541 LGA G 127 G 127 2.751 0 0.125 0.125 3.326 59.286 59.286 LGA D 128 D 128 2.977 3 0.457 0.438 3.805 51.905 33.095 LGA C 129 C 129 2.693 1 0.118 0.205 2.865 69.405 55.794 LGA C 130 C 130 2.189 1 0.055 0.056 3.130 77.619 60.079 LGA T 131 T 131 3.571 2 0.162 0.178 5.394 48.810 31.633 LGA N 132 N 132 2.738 3 0.248 0.261 3.846 53.690 34.940 LGA Y 133 Y 133 3.442 7 0.193 0.204 6.863 40.595 17.698 LGA Q 134 Q 134 8.370 4 0.039 0.048 10.602 6.190 2.804 LGA V 135 V 135 7.777 2 0.014 0.020 9.908 5.595 5.646 LGA V 136 V 136 8.523 2 0.022 0.031 12.302 3.214 2.857 LGA C 137 C 137 12.179 1 0.103 0.120 15.466 0.000 0.000 LGA K 138 K 138 14.876 4 0.474 0.453 15.016 0.000 0.000 LGA G 139 G 139 15.676 0 0.603 0.603 16.817 0.000 0.000 LGA E 140 E 140 15.225 4 0.664 0.632 16.636 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 45 180 180 100.00 345 221 64.06 45 SUMMARY(RMSD_GDC): 7.802 7.761 7.823 32.952 22.518 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 45 45 4.0 23 2.71 43.333 38.228 0.818 LGA_LOCAL RMSD: 2.710 Number of atoms: 23 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.382 Number of assigned atoms: 45 Std_ASGN_ATOMS RMSD: 7.802 Standard rmsd on all 45 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.752098 * X + -0.468750 * Y + 0.463273 * Z + -14.533869 Y_new = 0.652534 * X + -0.431023 * Y + 0.623233 * Z + 96.314110 Z_new = -0.092459 * X + 0.771033 * Y + 0.630047 * Z + 8.959126 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.426959 0.092591 0.885688 [DEG: 139.0545 5.3051 50.7462 ] ZXZ: 2.502368 0.889183 -0.119345 [DEG: 143.3751 50.9464 -6.8380 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS302_1-D2 REMARK 2: T0543-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS302_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 45 45 4.0 23 2.71 38.228 7.80 REMARK ---------------------------------------------------------- MOLECULE T0543TS302_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT N/A ATOM 476 N THR 96 -1.426 90.733 5.404 1.00 0.00 N ATOM 477 CA THR 96 -0.797 90.600 6.712 1.00 0.00 C ATOM 478 C THR 96 -0.605 91.959 7.373 1.00 0.00 C ATOM 479 O THR 96 -0.022 92.870 6.784 1.00 0.00 O ATOM 480 CB THR 96 0.535 89.876 6.589 1.00 0.00 C ATOM 481 N ALA 97 -1.100 92.091 8.598 1.00 0.00 N ATOM 482 CA ALA 97 -0.989 93.342 9.339 1.00 0.00 C ATOM 483 C ALA 97 0.468 93.755 9.507 1.00 0.00 C ATOM 484 O ALA 97 1.345 92.911 9.691 1.00 0.00 O ATOM 485 CB ALA 97 -1.666 93.217 10.696 1.00 0.00 C ATOM 486 N ARG 98 0.719 95.058 9.441 1.00 0.00 N ATOM 487 CA ARG 98 2.059 95.592 9.656 1.00 0.00 C ATOM 488 C ARG 98 2.611 95.165 11.010 1.00 0.00 C ATOM 489 O ARG 98 1.912 95.220 12.021 1.00 0.00 O ATOM 490 CB ARG 98 2.050 97.108 9.539 1.00 0.00 C ATOM 491 N GLY 99 3.870 94.741 11.022 1.00 0.00 N ATOM 492 CA GLY 99 4.534 94.348 12.259 1.00 0.00 C ATOM 493 C GLY 99 4.274 92.882 12.583 1.00 0.00 C ATOM 494 O GLY 99 4.720 92.374 13.612 1.00 0.00 O ATOM 496 N TRP 100 3.551 92.205 11.697 1.00 0.00 N ATOM 497 CA TRP 100 3.255 90.788 11.873 1.00 0.00 C ATOM 498 C TRP 100 4.415 89.921 11.401 1.00 0.00 C ATOM 499 O TRP 100 5.079 90.239 10.415 1.00 0.00 O ATOM 500 CB TRP 100 1.979 90.417 11.132 1.00 0.00 C ATOM 501 N GLU 101 4.654 88.824 12.112 1.00 0.00 N ATOM 502 CA GLU 101 5.717 87.894 11.751 1.00 0.00 C ATOM 503 C GLU 101 5.535 87.373 10.331 1.00 0.00 C ATOM 504 O GLU 101 4.411 87.168 9.874 1.00 0.00 O ATOM 505 CB GLU 101 5.770 86.739 12.739 1.00 0.00 C ATOM 506 N CYS 102 6.648 87.160 9.637 1.00 0.00 N ATOM 507 CA CYS 102 6.614 86.637 8.276 1.00 0.00 C ATOM 508 C CYS 102 6.581 87.765 7.253 1.00 0.00 C ATOM 509 O CYS 102 6.871 87.556 6.075 1.00 0.00 O ATOM 510 CB CYS 102 5.418 85.716 8.092 1.00 0.00 C ATOM 511 N THR 103 6.226 88.961 7.710 1.00 0.00 N ATOM 512 CA THR 103 6.147 90.124 6.834 1.00 0.00 C ATOM 513 C THR 103 7.477 90.379 6.136 1.00 0.00 C ATOM 514 O THR 103 8.520 90.473 6.784 1.00 0.00 O ATOM 515 CB THR 103 5.713 91.352 7.619 1.00 0.00 C ATOM 516 N LYS 104 7.434 90.492 4.813 1.00 0.00 N ATOM 517 CA LYS 104 8.635 90.746 4.026 1.00 0.00 C ATOM 518 C LYS 104 9.422 91.923 4.587 1.00 0.00 C ATOM 519 O LYS 104 10.644 91.855 4.727 1.00 0.00 O ATOM 520 CB LYS 104 8.272 90.992 2.570 1.00 0.00 C ATOM 521 N ASP 105 8.716 93.003 4.905 1.00 0.00 N ATOM 522 CA ASP 105 9.346 94.191 5.466 1.00 0.00 C ATOM 523 C ASP 105 10.007 93.886 6.804 1.00 0.00 C ATOM 524 O ASP 105 11.135 94.309 7.061 1.00 0.00 O ATOM 525 CB ASP 105 8.325 95.310 5.620 1.00 0.00 C ATOM 526 N ARG 106 9.300 93.149 7.653 1.00 0.00 N ATOM 527 CA ARG 106 9.818 92.783 8.966 1.00 0.00 C ATOM 528 C ARG 106 10.777 91.604 8.870 1.00 0.00 C ATOM 529 O ARG 106 11.389 91.207 9.862 1.00 0.00 O ATOM 530 CB ARG 106 8.676 92.465 9.917 1.00 0.00 C ATOM 531 N CYS 107 10.903 91.045 7.671 1.00 0.00 N ATOM 532 CA CYS 107 11.788 89.909 7.443 1.00 0.00 C ATOM 533 C CYS 107 13.236 90.358 7.302 1.00 0.00 C ATOM 534 O CYS 107 14.149 89.534 7.247 1.00 0.00 O ATOM 535 CB CYS 107 11.348 89.134 6.211 1.00 0.00 C ATOM 536 N GLY 108 13.440 91.670 7.245 1.00 0.00 N ATOM 537 CA GLY 108 14.779 92.232 7.109 1.00 0.00 C ATOM 538 C GLY 108 15.200 92.307 5.647 1.00 0.00 C ATOM 539 O GLY 108 14.358 92.351 4.750 1.00 0.00 O ATOM 541 N GLU 109 16.508 92.321 5.413 1.00 0.00 N ATOM 542 CA GLU 109 17.043 92.391 4.059 1.00 0.00 C ATOM 543 C GLU 109 16.719 91.127 3.272 1.00 0.00 C ATOM 544 O GLU 109 16.980 90.015 3.731 1.00 0.00 O ATOM 545 CB GLU 109 18.546 92.626 4.094 1.00 0.00 C ATOM 546 N VAL 110 16.148 91.305 2.086 1.00 0.00 N ATOM 547 CA VAL 110 15.788 90.179 1.233 1.00 0.00 C ATOM 548 C VAL 110 16.467 90.279 -0.127 1.00 0.00 C ATOM 549 O VAL 110 16.813 91.369 -0.581 1.00 0.00 O ATOM 550 CB VAL 110 14.278 90.101 1.069 1.00 0.00 C ATOM 551 N ARG 111 16.655 89.133 -0.774 1.00 0.00 N ATOM 552 CA ARG 111 17.294 89.088 -2.084 1.00 0.00 C ATOM 553 C ARG 111 16.958 90.329 -2.903 1.00 0.00 C ATOM 554 O ARG 111 16.110 91.130 -2.513 1.00 0.00 O ATOM 555 CB ARG 111 16.882 87.830 -2.832 1.00 0.00 C ATOM 556 N ASN 112 17.630 90.481 -4.038 1.00 0.00 N ATOM 557 CA ASN 112 17.404 91.624 -4.915 1.00 0.00 C ATOM 558 C ASN 112 16.135 91.445 -5.738 1.00 0.00 C ATOM 559 O ASN 112 15.413 92.407 -5.999 1.00 0.00 O ATOM 560 CB ASN 112 18.602 91.838 -5.826 1.00 0.00 C ATOM 561 N GLU 113 15.867 90.209 -6.143 1.00 0.00 N ATOM 562 CA GLU 113 14.684 89.902 -6.937 1.00 0.00 C ATOM 563 C GLU 113 13.441 89.809 -6.060 1.00 0.00 C ATOM 564 O GLU 113 13.466 89.194 -4.994 1.00 0.00 O ATOM 565 CB GLU 113 14.885 88.609 -7.711 1.00 0.00 C ATOM 566 N GLU 114 12.355 90.424 -6.516 1.00 0.00 N ATOM 567 CA GLU 114 11.099 90.412 -5.774 1.00 0.00 C ATOM 568 C GLU 114 10.491 89.015 -5.742 1.00 0.00 C ATOM 569 O GLU 114 10.159 88.449 -6.784 1.00 0.00 O ATOM 570 CB GLU 114 10.119 91.406 -6.376 1.00 0.00 C ATOM 571 N ASN 115 10.349 88.465 -4.541 1.00 0.00 N ATOM 572 CA ASN 115 9.780 87.133 -4.372 1.00 0.00 C ATOM 573 C ASN 115 8.395 87.202 -3.743 1.00 0.00 C ATOM 574 O ASN 115 8.107 88.096 -2.947 1.00 0.00 O ATOM 575 CB ASN 115 10.705 86.265 -3.531 1.00 0.00 C ATOM 576 N ALA 116 7.539 86.252 -4.103 1.00 0.00 N ATOM 577 CA ALA 116 6.181 86.203 -3.575 1.00 0.00 C ATOM 578 C ALA 116 6.162 85.648 -2.156 1.00 0.00 C ATOM 579 O ALA 116 5.653 86.286 -1.236 1.00 0.00 O ATOM 580 CB ALA 116 5.287 85.372 -4.483 1.00 0.00 C ATOM 581 N CYS 117 6.721 84.454 -1.985 1.00 0.00 N ATOM 582 CA CYS 117 6.769 83.811 -0.678 1.00 0.00 C ATOM 583 C CYS 117 7.692 84.562 0.272 1.00 0.00 C ATOM 584 O CYS 117 8.645 85.212 -0.157 1.00 0.00 O ATOM 585 CB CYS 117 7.213 82.362 -0.816 1.00 0.00 C ATOM 586 N HIS 118 7.404 84.469 1.565 1.00 0.00 N ATOM 587 CA HIS 118 8.208 85.141 2.580 1.00 0.00 C ATOM 588 C HIS 118 9.347 84.250 3.058 1.00 0.00 C ATOM 589 O HIS 118 10.410 84.738 3.443 1.00 0.00 O ATOM 590 CB HIS 118 7.337 85.567 3.751 1.00 0.00 C ATOM 591 N CYS 119 9.118 82.942 3.034 1.00 0.00 N ATOM 592 CA CYS 119 10.125 81.979 3.465 1.00 0.00 C ATOM 593 C CYS 119 11.410 82.128 2.660 1.00 0.00 C ATOM 594 O CYS 119 11.387 82.119 1.429 1.00 0.00 O ATOM 595 CB CYS 119 9.587 80.562 3.351 1.00 0.00 C ATOM 596 N SER 120 12.529 82.265 3.362 1.00 0.00 N ATOM 597 CA SER 120 13.827 82.416 2.714 1.00 0.00 C ATOM 598 C SER 120 14.236 81.136 1.998 1.00 0.00 C ATOM 599 O SER 120 13.866 80.036 2.409 1.00 0.00 O ATOM 600 CB SER 120 14.884 82.818 3.730 1.00 0.00 C ATOM 601 N GLU 121 15.004 81.284 0.924 1.00 0.00 N ATOM 602 CA GLU 121 15.466 80.139 0.148 1.00 0.00 C ATOM 603 C GLU 121 16.452 79.295 0.945 1.00 0.00 C ATOM 604 O GLU 121 16.506 78.075 0.790 1.00 0.00 O ATOM 605 CB GLU 121 16.096 80.602 -1.158 1.00 0.00 C ATOM 606 N ASP 122 17.231 79.952 1.797 1.00 0.00 N ATOM 607 CA ASP 122 18.217 79.263 2.622 1.00 0.00 C ATOM 608 C ASP 122 17.544 78.354 3.642 1.00 0.00 C ATOM 609 O ASP 122 18.010 77.244 3.900 1.00 0.00 O ATOM 610 CB ASP 122 19.121 80.268 3.319 1.00 0.00 C ATOM 611 N CYS 123 16.446 78.829 4.218 1.00 0.00 N ATOM 612 CA CYS 123 15.706 78.061 5.211 1.00 0.00 C ATOM 613 C CYS 123 14.973 76.892 4.567 1.00 0.00 C ATOM 614 O CYS 123 14.923 75.794 5.125 1.00 0.00 O ATOM 615 CB CYS 123 14.730 78.956 5.956 1.00 0.00 C ATOM 616 N LEU 124 14.404 77.132 3.391 1.00 0.00 N ATOM 617 CA LEU 124 13.671 76.098 2.668 1.00 0.00 C ATOM 618 C LEU 124 14.614 75.033 2.126 1.00 0.00 C ATOM 619 O LEU 124 14.258 73.856 2.049 1.00 0.00 O ATOM 620 CB LEU 124 12.859 76.716 1.541 1.00 0.00 C ATOM 621 N SER 125 15.818 75.449 1.751 1.00 0.00 N ATOM 622 CA SER 125 16.815 74.530 1.214 1.00 0.00 C ATOM 623 C SER 125 17.164 73.445 2.224 1.00 0.00 C ATOM 624 O SER 125 17.323 72.278 1.867 1.00 0.00 O ATOM 625 CB SER 125 18.065 75.289 0.795 1.00 0.00 C ATOM 626 N ARG 126 17.283 73.838 3.489 1.00 0.00 N ATOM 627 CA ARG 126 17.614 72.899 4.554 1.00 0.00 C ATOM 628 C ARG 126 16.384 72.122 5.005 1.00 0.00 C ATOM 629 O ARG 126 16.485 71.192 5.806 1.00 0.00 O ATOM 630 CB ARG 126 18.242 73.632 5.730 1.00 0.00 C ATOM 631 N GLY 127 15.224 72.509 4.487 1.00 0.00 N ATOM 632 CA GLY 127 13.971 71.848 4.836 1.00 0.00 C ATOM 633 C GLY 127 13.254 72.585 5.960 1.00 0.00 C ATOM 634 O GLY 127 12.301 72.070 6.543 1.00 0.00 O ATOM 636 N ASP 128 13.720 73.793 6.260 1.00 0.00 N ATOM 637 CA ASP 128 13.124 74.604 7.315 1.00 0.00 C ATOM 638 C ASP 128 12.479 75.861 6.747 1.00 0.00 C ATOM 639 O ASP 128 13.168 76.760 6.266 1.00 0.00 O ATOM 640 CB ASP 128 14.170 74.967 8.358 1.00 0.00 C ATOM 641 N CYS 129 11.153 75.917 6.804 1.00 0.00 N ATOM 642 CA CYS 129 10.411 77.064 6.294 1.00 0.00 C ATOM 643 C CYS 129 10.359 78.187 7.323 1.00 0.00 C ATOM 644 O CYS 129 10.810 78.025 8.456 1.00 0.00 O ATOM 645 CB CYS 129 9.006 76.650 5.888 1.00 0.00 C ATOM 646 N CYS 130 9.807 79.326 6.920 1.00 0.00 N ATOM 647 CA CYS 130 9.694 80.479 7.805 1.00 0.00 C ATOM 648 C CYS 130 8.923 80.127 9.072 1.00 0.00 C ATOM 649 O CYS 130 8.025 79.286 9.049 1.00 0.00 O ATOM 650 CB CYS 130 9.030 81.640 7.083 1.00 0.00 C ATOM 651 N THR 131 9.279 80.776 10.175 1.00 0.00 N ATOM 652 CA THR 131 8.621 80.534 11.454 1.00 0.00 C ATOM 653 C THR 131 7.124 80.804 11.362 1.00 0.00 C ATOM 654 O THR 131 6.309 79.974 11.763 1.00 0.00 O ATOM 655 CB THR 131 9.250 81.387 12.544 1.00 0.00 C ATOM 656 N ASN 132 6.770 81.970 10.831 1.00 0.00 N ATOM 657 CA ASN 132 5.370 82.351 10.686 1.00 0.00 C ATOM 658 C ASN 132 4.623 81.375 9.787 1.00 0.00 C ATOM 659 O ASN 132 3.486 80.999 10.071 1.00 0.00 O ATOM 660 CB ASN 132 5.260 83.767 10.143 1.00 0.00 C ATOM 661 N TYR 133 5.269 80.966 8.700 1.00 0.00 N ATOM 662 CA TYR 133 4.667 80.032 7.756 1.00 0.00 C ATOM 663 C TYR 133 4.185 78.771 8.461 1.00 0.00 C ATOM 664 O TYR 133 3.347 78.037 7.937 1.00 0.00 O ATOM 665 CB TYR 133 5.655 79.682 6.654 1.00 0.00 C ATOM 666 N GLN 134 4.720 78.524 9.652 1.00 0.00 N ATOM 667 CA GLN 134 4.345 77.350 10.432 1.00 0.00 C ATOM 668 C GLN 134 2.839 77.292 10.651 1.00 0.00 C ATOM 669 O GLN 134 2.247 76.214 10.679 1.00 0.00 O ATOM 670 CB GLN 134 5.078 77.342 11.764 1.00 0.00 C ATOM 671 N VAL 135 2.223 78.460 10.805 1.00 0.00 N ATOM 672 CA VAL 135 0.784 78.544 11.023 1.00 0.00 C ATOM 673 C VAL 135 0.014 78.128 9.777 1.00 0.00 C ATOM 674 O VAL 135 -0.921 77.328 9.851 1.00 0.00 O ATOM 675 CB VAL 135 0.393 79.952 11.443 1.00 0.00 C ATOM 676 N VAL 136 0.410 78.672 8.632 1.00 0.00 N ATOM 677 CA VAL 136 -0.242 78.357 7.367 1.00 0.00 C ATOM 678 C VAL 136 0.089 76.941 6.912 1.00 0.00 C ATOM 679 O VAL 136 -0.760 76.241 6.363 1.00 0.00 O ATOM 680 CB VAL 136 0.155 79.365 6.299 1.00 0.00 C ATOM 681 N CYS 137 1.330 76.526 7.146 1.00 0.00 N ATOM 682 CA CYS 137 1.777 75.193 6.761 1.00 0.00 C ATOM 683 C CYS 137 1.223 74.133 7.704 1.00 0.00 C ATOM 684 O CYS 137 0.865 73.035 7.277 1.00 0.00 O ATOM 685 CB CYS 137 3.296 75.133 6.726 1.00 0.00 C ATOM 686 N LYS 138 1.154 74.468 8.988 1.00 0.00 N ATOM 687 CA LYS 138 0.643 73.545 9.994 1.00 0.00 C ATOM 688 C LYS 138 -0.878 73.489 9.968 1.00 0.00 C ATOM 689 O LYS 138 -1.551 74.462 10.307 1.00 0.00 O ATOM 690 CB LYS 138 1.138 73.941 11.377 1.00 0.00 C ATOM 691 N GLY 139 -1.416 72.343 9.563 1.00 0.00 N ATOM 692 CA GLY 139 -2.860 72.158 9.492 1.00 0.00 C ATOM 693 C GLY 139 -3.385 71.438 10.728 1.00 0.00 C ATOM 694 O GLY 139 -2.927 70.346 11.064 1.00 0.00 O ATOM 696 N GLU 140 -4.349 72.057 11.402 1.00 0.00 N ATOM 697 CA GLU 140 -4.937 71.476 12.603 1.00 0.00 C ATOM 698 C GLU 140 -6.077 70.527 12.254 1.00 0.00 C ATOM 699 O GLU 140 -6.436 69.657 13.047 1.00 0.00 O ATOM 700 CB GLU 140 -5.426 72.574 13.537 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 221 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 68.36 58.0 88 100.0 88 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 69.01 59.7 62 100.0 62 ARMSMC BURIED . . . . . . . . 66.79 53.8 26 100.0 26 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 39 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 36 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 26 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 18 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.80 (Number of atoms: 45) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.80 45 100.0 45 CRMSCA CRN = ALL/NP . . . . . 0.1734 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 8.10 32 100.0 32 CRMSCA BURIED . . . . . . . . 7.01 13 100.0 13 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.82 221 100.0 221 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 8.18 156 100.0 156 CRMSMC BURIED . . . . . . . . 6.90 65 100.0 65 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 8.08 41 24.8 165 CRMSSC RELIABLE SIDE CHAINS . 8.08 41 28.3 145 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 8.57 28 25.0 112 CRMSSC BURIED . . . . . . . . 6.93 13 24.5 53 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 7.82 221 64.1 345 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 8.18 156 65.0 240 CRMSALL BURIED . . . . . . . . 6.90 65 61.9 105 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.567 1.000 0.500 45 100.0 45 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 6.937 1.000 0.500 32 100.0 32 ERRCA BURIED . . . . . . . . 5.655 1.000 0.500 13 100.0 13 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.626 1.000 0.500 221 100.0 221 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 7.065 1.000 0.500 156 100.0 156 ERRMC BURIED . . . . . . . . 5.574 1.000 0.500 65 100.0 65 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.962 1.000 0.500 41 24.8 165 ERRSC RELIABLE SIDE CHAINS . 6.962 1.000 0.500 41 28.3 145 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 7.490 1.000 0.500 28 25.0 112 ERRSC BURIED . . . . . . . . 5.827 1.000 0.500 13 24.5 53 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.626 1.000 0.500 221 64.1 345 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 7.065 1.000 0.500 156 65.0 240 ERRALL BURIED . . . . . . . . 5.574 1.000 0.500 65 61.9 105 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 5 12 21 33 45 45 DISTCA CA (P) 0.00 11.11 26.67 46.67 73.33 45 DISTCA CA (RMS) 0.00 1.35 2.14 3.32 4.84 DISTCA ALL (N) 4 30 47 98 169 221 345 DISTALL ALL (P) 1.16 8.70 13.62 28.41 48.99 345 DISTALL ALL (RMS) 0.83 1.46 1.89 3.25 5.28 DISTALL END of the results output